xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision a5b7ff6b211d69bb2e6523989771c5d3a0ae7db2)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
13a30f8f8cSSatish Balay {
14f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
15dfbe8321SBarry Smith   PetscErrorCode ierr;
16a30f8f8cSSatish Balay 
17a30f8f8cSSatish Balay   PetscFunctionBegin;
18a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
20a30f8f8cSSatish Balay   PetscFunctionReturn(0);
21a30f8f8cSSatish Balay }
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
36d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
37a30f8f8cSSatish Balay   { \
38a30f8f8cSSatish Balay  \
39a30f8f8cSSatish Balay     brow = row/bs;  \
40a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
41a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
42a30f8f8cSSatish Balay     bcol = col/bs; \
43a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
44a30f8f8cSSatish Balay     low  = 0; high = nrow; \
45a30f8f8cSSatish Balay     while (high-low > 3) { \
46a30f8f8cSSatish Balay       t = (low+high)/2; \
47a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
48a30f8f8cSSatish Balay       else              low  = t; \
49a30f8f8cSSatish Balay     } \
50a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
51a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
52a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
53a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
54a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
55a30f8f8cSSatish Balay         else                    *bap  = value;  \
56a30f8f8cSSatish Balay         goto a_noinsert; \
57a30f8f8cSSatish Balay       } \
58a30f8f8cSSatish Balay     } \
59a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
60d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
61fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
62a30f8f8cSSatish Balay     N = nrow++ - 1;  \
63a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
64a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
65a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
66a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
67a30f8f8cSSatish Balay     } \
68a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
69a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
70a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
71e56f5c9eSBarry Smith     A->nonzerostate++;\
72a30f8f8cSSatish Balay a_noinsert:; \
73a30f8f8cSSatish Balay     ailen[brow] = nrow; \
74a30f8f8cSSatish Balay   }
75e5e170daSBarry Smith 
76d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
77a30f8f8cSSatish Balay   { \
78a30f8f8cSSatish Balay     brow = row/bs;  \
79a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
80a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
81a30f8f8cSSatish Balay     bcol = col/bs; \
82a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
83a30f8f8cSSatish Balay     low  = 0; high = nrow; \
84a30f8f8cSSatish Balay     while (high-low > 3) { \
85a30f8f8cSSatish Balay       t = (low+high)/2; \
86a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
87a30f8f8cSSatish Balay       else              low  = t; \
88a30f8f8cSSatish Balay     } \
89a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
90a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
91a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
92a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
93a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
94a30f8f8cSSatish Balay         else                    *bap  = value;  \
95a30f8f8cSSatish Balay         goto b_noinsert; \
96a30f8f8cSSatish Balay       } \
97a30f8f8cSSatish Balay     } \
98a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
99d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
100fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
101a30f8f8cSSatish Balay     N = nrow++ - 1;  \
102a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
103a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
104a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
105a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
106a30f8f8cSSatish Balay     } \
107a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
108a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
109a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
110e56f5c9eSBarry Smith     B->nonzerostate++;\
111a30f8f8cSSatish Balay b_noinsert:; \
112a30f8f8cSSatish Balay     bilen[brow] = nrow; \
113a30f8f8cSSatish Balay   }
114a30f8f8cSSatish Balay 
115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
116a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
117a30f8f8cSSatish Balay */
1184a2ae208SSatish Balay #undef __FUNCT__
119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
121a30f8f8cSSatish Balay {
122a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
123a30f8f8cSSatish Balay   MatScalar      value;
124ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
125dfbe8321SBarry Smith   PetscErrorCode ierr;
1261302d50aSBarry Smith   PetscInt       i,j,row,col;
127d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
128d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
129d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   /* Some Variables required in the macro */
132a30f8f8cSSatish Balay   Mat          A     = baij->A;
133a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1341302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
135a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
136a30f8f8cSSatish Balay 
137a30f8f8cSSatish Balay   Mat         B     = baij->B;
138a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1391302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
140a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
141a30f8f8cSSatish Balay 
1421302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1431302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
144a30f8f8cSSatish Balay   MatScalar *ap,*bap;
145a30f8f8cSSatish Balay 
146a30f8f8cSSatish Balay   /* for stash */
1470298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1480298fd71SBarry Smith   MatScalar *v_loc = NULL;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   PetscFunctionBegin;
151a30f8f8cSSatish Balay   if (!baij->donotstash) {
15259ffdab8SBarry Smith     if (n > baij->n_loc) {
15359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
155785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
156785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15726fbe8dcSKarl Rupp 
15859ffdab8SBarry Smith       baij->n_loc = n;
15959ffdab8SBarry Smith     }
16059ffdab8SBarry Smith     in_loc = baij->in_loc;
16159ffdab8SBarry Smith     v_loc  = baij->v_loc;
162a30f8f8cSSatish Balay   }
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
165a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
167e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
168a30f8f8cSSatish Balay #endif
169a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
170a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
171a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
17201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17301b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17526fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17601b2bd88SHong Zhang         }
177a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
178a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
179a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
180a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
181db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
182db4deed7SKarl Rupp           else             value = v[i+j*m];
183d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
184a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
185a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
187cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
188a30f8f8cSSatish Balay #endif
189a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
190a30f8f8cSSatish Balay           if (mat->was_assembled) {
191a30f8f8cSSatish Balay             if (!baij->colmap) {
192ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
193a30f8f8cSSatish Balay             }
194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
195a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19671730473SSatish Balay             col  = col - 1;
197a30f8f8cSSatish Balay #else
19871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
199a30f8f8cSSatish Balay #endif
200a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
201ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
202a30f8f8cSSatish Balay               col  =  in[j];
203a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
204a30f8f8cSSatish Balay               B    = baij->B;
205a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
206a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
207a30f8f8cSSatish Balay               ba   = b->a;
20871730473SSatish Balay             } else col += in[j]%bs;
209a30f8f8cSSatish Balay           } else col = in[j];
210db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
211db4deed7SKarl Rupp           else             value = v[i+j*m];
212d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
213a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
214a30f8f8cSSatish Balay         }
215a30f8f8cSSatish Balay       }
216a30f8f8cSSatish Balay     } else {  /* off processor entry */
2174cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
218a30f8f8cSSatish Balay       if (!baij->donotstash) {
2195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
220a30f8f8cSSatish Balay         n_loc          = 0;
221a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
222f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
223a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
224a30f8f8cSSatish Balay           if (roworiented) {
225a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
226a30f8f8cSSatish Balay           } else {
227a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
228a30f8f8cSSatish Balay           }
229a30f8f8cSSatish Balay           n_loc++;
230a30f8f8cSSatish Balay         }
231b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     }
234a30f8f8cSSatish Balay   }
235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
236a30f8f8cSSatish Balay }
237a30f8f8cSSatish Balay 
2384a2ae208SSatish Balay #undef __FUNCT__
23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined"
24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
24136bd2089SBarry Smith {
24236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
24336bd2089SBarry Smith   PetscErrorCode    ierr;
24436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
24536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
24636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
24736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
24836bd2089SBarry Smith   const PetscScalar *value     = v;
24936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
25036bd2089SBarry Smith 
25136bd2089SBarry Smith   PetscFunctionBegin;
25236bd2089SBarry Smith   if (col < row) {
25336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
25436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
25536bd2089SBarry Smith   }
25636bd2089SBarry Smith   rp   = aj + ai[row];
25736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
25836bd2089SBarry Smith   rmax = imax[row];
25936bd2089SBarry Smith   nrow = ailen[row];
26036bd2089SBarry Smith   value = v;
26136bd2089SBarry Smith   low   = 0;
26236bd2089SBarry Smith   high  = nrow;
26336bd2089SBarry Smith 
26436bd2089SBarry Smith   while (high-low > 7) {
26536bd2089SBarry Smith     t = (low+high)/2;
26636bd2089SBarry Smith     if (rp[t] > col) high = t;
26736bd2089SBarry Smith     else             low  = t;
26836bd2089SBarry Smith   }
26936bd2089SBarry Smith   for (i=low; i<high; i++) {
27036bd2089SBarry Smith     if (rp[i] > col) break;
27136bd2089SBarry Smith     if (rp[i] == col) {
27236bd2089SBarry Smith       bap = ap +  bs2*i;
27336bd2089SBarry Smith       if (roworiented) {
27436bd2089SBarry Smith         if (is == ADD_VALUES) {
27536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
27636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
27736bd2089SBarry Smith               bap[jj] += *value++;
27836bd2089SBarry Smith             }
27936bd2089SBarry Smith           }
28036bd2089SBarry Smith         } else {
28136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
28236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
28336bd2089SBarry Smith               bap[jj] = *value++;
28436bd2089SBarry Smith             }
28536bd2089SBarry Smith           }
28636bd2089SBarry Smith         }
28736bd2089SBarry Smith       } else {
28836bd2089SBarry Smith         if (is == ADD_VALUES) {
28936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29136bd2089SBarry Smith               *bap++ += *value++;
29236bd2089SBarry Smith             }
29336bd2089SBarry Smith           }
29436bd2089SBarry Smith         } else {
29536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29736bd2089SBarry Smith               *bap++  = *value++;
29836bd2089SBarry Smith             }
29936bd2089SBarry Smith           }
30036bd2089SBarry Smith         }
30136bd2089SBarry Smith       }
30236bd2089SBarry Smith       goto noinsert2;
30336bd2089SBarry Smith     }
30436bd2089SBarry Smith   }
30536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
30636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
30736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
30836bd2089SBarry Smith   N = nrow++ - 1; high++;
30936bd2089SBarry Smith   /* shift up all the later entries in this row */
31036bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
31136bd2089SBarry Smith     rp[ii+1] = rp[ii];
31236bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
31336bd2089SBarry Smith   }
31436bd2089SBarry Smith   if (N >= i) {
31536bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
31636bd2089SBarry Smith   }
31736bd2089SBarry Smith   rp[i] = col;
31836bd2089SBarry Smith   bap   = ap +  bs2*i;
31936bd2089SBarry Smith   if (roworiented) {
32036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32136bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
32236bd2089SBarry Smith         bap[jj] = *value++;
32336bd2089SBarry Smith       }
32436bd2089SBarry Smith     }
32536bd2089SBarry Smith   } else {
32636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32736bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
32836bd2089SBarry Smith         *bap++ = *value++;
32936bd2089SBarry Smith       }
33036bd2089SBarry Smith     }
33136bd2089SBarry Smith   }
33236bd2089SBarry Smith   noinsert2:;
33336bd2089SBarry Smith   ailen[row] = nrow;
33436bd2089SBarry Smith   PetscFunctionReturn(0);
33536bd2089SBarry Smith }
33636bd2089SBarry Smith 
33736bd2089SBarry Smith #undef __FUNCT__
33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined"
33936bd2089SBarry Smith /*
34036bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
34136bd2089SBarry Smith */
34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34336bd2089SBarry Smith {
34436bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
34536bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34636bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
34736bd2089SBarry Smith   PetscErrorCode    ierr;
34836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
35036bd2089SBarry Smith   const PetscScalar *value     = v;
35136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35236bd2089SBarry Smith 
35336bd2089SBarry Smith   PetscFunctionBegin;
35436bd2089SBarry Smith   rp   = aj + ai[row];
35536bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35636bd2089SBarry Smith   rmax = imax[row];
35736bd2089SBarry Smith   nrow = ailen[row];
35836bd2089SBarry Smith   low  = 0;
35936bd2089SBarry Smith   high = nrow;
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   while (high-low > 7) {
36236bd2089SBarry Smith     t = (low+high)/2;
36336bd2089SBarry Smith     if (rp[t] > col) high = t;
36436bd2089SBarry Smith     else             low  = t;
36536bd2089SBarry Smith   }
36636bd2089SBarry Smith   for (i=low; i<high; i++) {
36736bd2089SBarry Smith     if (rp[i] > col) break;
36836bd2089SBarry Smith     if (rp[i] == col) {
36936bd2089SBarry Smith       bap = ap +  bs2*i;
37036bd2089SBarry Smith       if (roworiented) {
37136bd2089SBarry Smith         if (is == ADD_VALUES) {
37236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37436bd2089SBarry Smith               bap[jj] += *value++;
37536bd2089SBarry Smith             }
37636bd2089SBarry Smith           }
37736bd2089SBarry Smith         } else {
37836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38036bd2089SBarry Smith               bap[jj] = *value++;
38136bd2089SBarry Smith             }
38236bd2089SBarry Smith           }
38336bd2089SBarry Smith         }
38436bd2089SBarry Smith       } else {
38536bd2089SBarry Smith         if (is == ADD_VALUES) {
38636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
38736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38836bd2089SBarry Smith               bap[jj] += value[jj];
38936bd2089SBarry Smith             }
39036bd2089SBarry Smith             bap += bs;
39136bd2089SBarry Smith           }
39236bd2089SBarry Smith         } else {
39336bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
39436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39536bd2089SBarry Smith               bap[jj]  = value[jj];
39636bd2089SBarry Smith             }
39736bd2089SBarry Smith             bap += bs;
39836bd2089SBarry Smith           }
39936bd2089SBarry Smith         }
40036bd2089SBarry Smith       }
40136bd2089SBarry Smith       goto noinsert2;
40236bd2089SBarry Smith     }
40336bd2089SBarry Smith   }
40436bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40536bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
40636bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40736bd2089SBarry Smith   N = nrow++ - 1; high++;
40836bd2089SBarry Smith   /* shift up all the later entries in this row */
40936bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
41036bd2089SBarry Smith     rp[ii+1] = rp[ii];
41136bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
41236bd2089SBarry Smith   }
41336bd2089SBarry Smith   if (N >= i) {
41436bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
41536bd2089SBarry Smith   }
41636bd2089SBarry Smith   rp[i] = col;
41736bd2089SBarry Smith   bap   = ap +  bs2*i;
41836bd2089SBarry Smith   if (roworiented) {
41936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
42136bd2089SBarry Smith         bap[jj] = *value++;
42236bd2089SBarry Smith       }
42336bd2089SBarry Smith     }
42436bd2089SBarry Smith   } else {
42536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42736bd2089SBarry Smith         *bap++ = *value++;
42836bd2089SBarry Smith       }
42936bd2089SBarry Smith     }
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   noinsert2:;
43236bd2089SBarry Smith   ailen[row] = nrow;
43336bd2089SBarry Smith   PetscFunctionReturn(0);
43436bd2089SBarry Smith }
43536bd2089SBarry Smith 
43636bd2089SBarry Smith #undef __FUNCT__
437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
43836bd2089SBarry Smith /*
43936bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
44036bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
44136bd2089SBarry Smith */
442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
443a30f8f8cSSatish Balay {
4440880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
445f15d580aSBarry Smith   const MatScalar *value;
446f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
447ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
448dfbe8321SBarry Smith   PetscErrorCode  ierr;
449899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
450899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
451d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
4520880e062SHong Zhang 
453a30f8f8cSSatish Balay   PetscFunctionBegin;
4540880e062SHong Zhang   if (!barray) {
455785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
4560880e062SHong Zhang     baij->barray = barray;
4570880e062SHong Zhang   }
4580880e062SHong Zhang 
4590880e062SHong Zhang   if (roworiented) {
4600880e062SHong Zhang     stepval = (n-1)*bs;
4610880e062SHong Zhang   } else {
4620880e062SHong Zhang     stepval = (m-1)*bs;
4630880e062SHong Zhang   }
4640880e062SHong Zhang   for (i=0; i<m; i++) {
4650880e062SHong Zhang     if (im[i] < 0) continue;
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
4680880e062SHong Zhang #endif
4690880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4700880e062SHong Zhang       row = im[i] - rstart;
4710880e062SHong Zhang       for (j=0; j<n; j++) {
472f3f98c53SJed Brown         if (im[i] > in[j]) {
473f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
474e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
475f3f98c53SJed Brown         }
4760880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4770880e062SHong Zhang         if ((roworiented) && (n == 1)) {
478f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4790880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
480f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4810880e062SHong Zhang         } else { /* Here a copy is required */
4820880e062SHong Zhang           if (roworiented) {
4830880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4840880e062SHong Zhang           } else {
4850880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4860880e062SHong Zhang           }
4870880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4880880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4890880e062SHong Zhang               *barray++ = *value++;
4900880e062SHong Zhang             }
4910880e062SHong Zhang           }
4920880e062SHong Zhang           barray -=bs2;
4930880e062SHong Zhang         }
4940880e062SHong Zhang 
4950880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
4960880e062SHong Zhang           col  = in[j] - cstart;
49736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
49826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
500bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5010880e062SHong Zhang #endif
5020880e062SHong Zhang         else {
5030880e062SHong Zhang           if (mat->was_assembled) {
5040880e062SHong Zhang             if (!baij->colmap) {
505ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5060880e062SHong Zhang             }
5070880e062SHong Zhang 
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5101302d50aSBarry Smith             { PetscInt data;
5110880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
512e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5130880e062SHong Zhang             }
5140880e062SHong Zhang #else
515e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5160880e062SHong Zhang #endif
5170880e062SHong Zhang #endif
5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5190880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5200880e062SHong Zhang             col  = (col - 1)/bs;
5210880e062SHong Zhang #else
5220880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5230880e062SHong Zhang #endif
5240880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
525ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5260880e062SHong Zhang               col  = in[j];
5270880e062SHong Zhang             }
52826fbe8dcSKarl Rupp           } else col = in[j];
52936bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5300880e062SHong Zhang         }
5310880e062SHong Zhang       }
5320880e062SHong Zhang     } else {
533bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
5340880e062SHong Zhang       if (!baij->donotstash) {
5350880e062SHong Zhang         if (roworiented) {
5360880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5370880e062SHong Zhang         } else {
5380880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5390880e062SHong Zhang         }
5400880e062SHong Zhang       }
5410880e062SHong Zhang     }
5420880e062SHong Zhang   }
5430880e062SHong Zhang   PetscFunctionReturn(0);
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
553d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
558e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
563e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
565a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data--;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
587a30f8f8cSSatish Balay }
588a30f8f8cSSatish Balay 
5894a2ae208SSatish Balay #undef __FUNCT__
5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
592a30f8f8cSSatish Balay {
593a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
594dfbe8321SBarry Smith   PetscErrorCode ierr;
595a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
596a30f8f8cSSatish Balay 
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay   if (baij->size == 1) {
599a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   } else {
601a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
602785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
603a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
604a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
605a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
607b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6088f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
609a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6100b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6110b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6120b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6130b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
614899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
615d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6160b8dc8d2SHong Zhang       MatScalar    *v;
6170b8dc8d2SHong Zhang 
618dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
619d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6200b8dc8d2SHong Zhang       /* Amat */
6210b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6220b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6230b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6240b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6250b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6260b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6270b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6280b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6290b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6300b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6310b8dc8d2SHong Zhang               /* non-diagonal block */
6320b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6330b8dc8d2SHong Zhang             }
6340b8dc8d2SHong Zhang           }
6350b8dc8d2SHong Zhang         }
63651f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
6370b8dc8d2SHong Zhang       }
6380b8dc8d2SHong Zhang       /* Bmat */
6390b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
6400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6420b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
6430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6440b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
6450b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6460b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6470b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6490b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6500b8dc8d2SHong Zhang             }
6510b8dc8d2SHong Zhang           }
6520b8dc8d2SHong Zhang         }
65351f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
6540b8dc8d2SHong Zhang       }
655b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6560b8dc8d2SHong Zhang       *norm = 0.0;
657d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
6580b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6590b8dc8d2SHong Zhang       }
66074ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
661f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
662a30f8f8cSSatish Balay   }
663a30f8f8cSSatish Balay   PetscFunctionReturn(0);
664a30f8f8cSSatish Balay }
665a30f8f8cSSatish Balay 
6664a2ae208SSatish Balay #undef __FUNCT__
6674a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
668dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
669a30f8f8cSSatish Balay {
670a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
671dfbe8321SBarry Smith   PetscErrorCode ierr;
6721302d50aSBarry Smith   PetscInt       nstash,reallocs;
673a30f8f8cSSatish Balay 
674a30f8f8cSSatish Balay   PetscFunctionBegin;
67526fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
676a30f8f8cSSatish Balay 
677d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
6781e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
679a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6801e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
681a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6821e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
683a30f8f8cSSatish Balay   PetscFunctionReturn(0);
684a30f8f8cSSatish Balay }
685a30f8f8cSSatish Balay 
6864a2ae208SSatish Balay #undef __FUNCT__
6874a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
688dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
689a30f8f8cSSatish Balay {
690a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
691a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
6926849ba73SBarry Smith   PetscErrorCode ierr;
69313f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
694e44c0bd4SBarry Smith   PetscInt       *row,*col;
695ace3abfcSBarry Smith   PetscBool      other_disassembled;
69613f74950SBarry Smith   PetscMPIInt    n;
697ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
698a30f8f8cSSatish Balay   MatScalar      *val;
699a30f8f8cSSatish Balay 
70091c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
701a30f8f8cSSatish Balay   PetscFunctionBegin;
7024cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
703a30f8f8cSSatish Balay     while (1) {
704a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
705a30f8f8cSSatish Balay       if (!flg) break;
706a30f8f8cSSatish Balay 
707a30f8f8cSSatish Balay       for (i=0; i<n;) {
708a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
70926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
71026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
71126fbe8dcSKarl Rupp         }
712a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
713a30f8f8cSSatish Balay         else       ncols = n-i;
714a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7154b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
716a30f8f8cSSatish Balay         i    = j;
717a30f8f8cSSatish Balay       }
718a30f8f8cSSatish Balay     }
719a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
721a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
722a30f8f8cSSatish Balay        restore the original flags */
723a30f8f8cSSatish Balay     r1 = baij->roworiented;
724a30f8f8cSSatish Balay     r2 = a->roworiented;
72591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
72626fbe8dcSKarl Rupp 
727a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
728a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
72926fbe8dcSKarl Rupp 
73091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
731a30f8f8cSSatish Balay     while (1) {
732a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
733a30f8f8cSSatish Balay       if (!flg) break;
734a30f8f8cSSatish Balay 
735a30f8f8cSSatish Balay       for (i=0; i<n;) {
736a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
73726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
73826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
73926fbe8dcSKarl Rupp         }
740a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
741a30f8f8cSSatish Balay         else       ncols = n-i;
7424b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
743a30f8f8cSSatish Balay         i    = j;
744a30f8f8cSSatish Balay       }
745a30f8f8cSSatish Balay     }
746a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
74726fbe8dcSKarl Rupp 
748a30f8f8cSSatish Balay     baij->roworiented = r1;
749a30f8f8cSSatish Balay     a->roworiented    = r2;
75026fbe8dcSKarl Rupp 
75191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
752a30f8f8cSSatish Balay   }
753a30f8f8cSSatish Balay 
754a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
756a30f8f8cSSatish Balay 
757a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
758a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
759a30f8f8cSSatish Balay   /*
760a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
761a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
762a30f8f8cSSatish Balay   */
763a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
764b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
765a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
766ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
767a30f8f8cSSatish Balay     }
768a30f8f8cSSatish Balay   }
769a30f8f8cSSatish Balay 
770a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
77140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
772a30f8f8cSSatish Balay   }
773a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
774a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
775a30f8f8cSSatish Balay 
77674ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77726fbe8dcSKarl Rupp 
778a30f8f8cSSatish Balay   baij->rowvalues = 0;
7794f9cfa9eSBarry Smith 
7804f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
7814f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
782e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
783b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
784e56f5c9eSBarry Smith   }
785a30f8f8cSSatish Balay   PetscFunctionReturn(0);
786a30f8f8cSSatish Balay }
787a30f8f8cSSatish Balay 
788383922c3SLisandro Dalcin extern PetscErrorCode MatView_SeqSBAIJ(Mat,PetscViewer);
789dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
7909804daf3SBarry Smith #include <petscdraw.h>
7914a2ae208SSatish Balay #undef __FUNCT__
7924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
794a30f8f8cSSatish Balay {
795a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
796dfbe8321SBarry Smith   PetscErrorCode    ierr;
797d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
7987da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
799ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
800b0a32e0cSBarry Smith   PetscViewer       sviewer;
801f3ef73ceSBarry Smith   PetscViewerFormat format;
802a30f8f8cSSatish Balay 
803a30f8f8cSSatish Balay   PetscFunctionBegin;
804251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
805251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
80632077d6dSBarry Smith   if (iascii) {
807b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
808456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
809a30f8f8cSSatish Balay       MatInfo info;
810ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
811a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8121575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
8137b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
814a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
815e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
816a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
817e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
818b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8191575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
82007d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
821a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
822a30f8f8cSSatish Balay       PetscFunctionReturn(0);
823fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
82477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
825a30f8f8cSSatish Balay       PetscFunctionReturn(0);
826c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
827c1490034SHong Zhang       PetscFunctionReturn(0);
828a30f8f8cSSatish Balay     }
829a30f8f8cSSatish Balay   }
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   if (isdraw) {
832b0a32e0cSBarry Smith     PetscDraw draw;
833ace3abfcSBarry Smith     PetscBool isnull;
834b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
83545f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
83645f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
837a30f8f8cSSatish Balay   }
838a30f8f8cSSatish Balay 
8397da1fb6eSBarry Smith   {
840a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
841a30f8f8cSSatish Balay     Mat          A;
84265d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84365d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
844d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
845a30f8f8cSSatish Balay     MatScalar    *a;
8463e219373SBarry Smith     const char   *matname;
847a30f8f8cSSatish Balay 
848f204ca49SKris Buschelman     /* Should this be the same type as mat? */
849ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
850a30f8f8cSSatish Balay     if (!rank) {
851f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
852a30f8f8cSSatish Balay     } else {
853f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
854a30f8f8cSSatish Balay     }
855f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
8560298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
8572b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
8583bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
859a30f8f8cSSatish Balay 
860a30f8f8cSSatish Balay     /* copy over the A part */
86165d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
862a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
863785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
864a30f8f8cSSatish Balay 
865a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
866e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
86726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
868a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
869e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
870a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
871dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
87226fbe8dcSKarl Rupp           col++;
87326fbe8dcSKarl Rupp           a += bs;
874a30f8f8cSSatish Balay         }
875a30f8f8cSSatish Balay       }
876a30f8f8cSSatish Balay     }
877a30f8f8cSSatish Balay     /* copy over the B part */
87865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
87965d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
880a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
881e9f7bc9eSHong Zhang 
882e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
88326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
884a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
885a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
886a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
887799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
88826fbe8dcSKarl Rupp           col++;
88926fbe8dcSKarl Rupp           a += bs;
890a30f8f8cSSatish Balay         }
891a30f8f8cSSatish Balay       }
892a30f8f8cSSatish Balay     }
893a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
894a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
895a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
896a30f8f8cSSatish Balay     /*
897a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
898b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
899a30f8f8cSSatish Balay     */
9003f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
901ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9023e219373SBarry Smith     if (!rank) {
903ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
904383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
905a30f8f8cSSatish Balay     }
9063f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9071575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9086bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
909a30f8f8cSSatish Balay   }
910a30f8f8cSSatish Balay   PetscFunctionReturn(0);
911a30f8f8cSSatish Balay }
912a30f8f8cSSatish Balay 
9134a2ae208SSatish Balay #undef __FUNCT__
9144a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
915dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
916a30f8f8cSSatish Balay {
917dfbe8321SBarry Smith   PetscErrorCode ierr;
918ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
919a30f8f8cSSatish Balay 
920a30f8f8cSSatish Balay   PetscFunctionBegin;
921251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
922251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
923251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
924251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
92532077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
926a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
927a30f8f8cSSatish Balay   }
928a30f8f8cSSatish Balay   PetscFunctionReturn(0);
929a30f8f8cSSatish Balay }
930a30f8f8cSSatish Balay 
9314a2ae208SSatish Balay #undef __FUNCT__
9324a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
933dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
934a30f8f8cSSatish Balay {
935a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
936dfbe8321SBarry Smith   PetscErrorCode ierr;
937a30f8f8cSSatish Balay 
938a30f8f8cSSatish Balay   PetscFunctionBegin;
939a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
940d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
941a30f8f8cSSatish Balay #endif
942a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
943a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
9446bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
9456bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
946a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
9476bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
948a30f8f8cSSatish Balay #else
94905b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
950a30f8f8cSSatish Balay #endif
95105b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
9526bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
9536bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
9546bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
9556bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
9566bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
9576bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
9586bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
9596bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
9605755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
96105b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
96205b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
9636bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
9646bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
9656bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
966ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
96705b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
968a30f8f8cSSatish Balay #endif
96959ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
97059ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
971899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
972bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
973901853e0SKris Buschelman 
974dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
975bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
976bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
977bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
978bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
979bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
9806214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
9816214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
9826214f412SHong Zhang #endif
983a30f8f8cSSatish Balay   PetscFunctionReturn(0);
984a30f8f8cSSatish Balay }
985a30f8f8cSSatish Balay 
9864a2ae208SSatish Balay #undef __FUNCT__
987547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
988547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
989547795f9SHong Zhang {
990547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
991547795f9SHong Zhang   PetscErrorCode    ierr;
992547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
9936de40e93SBarry Smith   PetscScalar       *from;
9946de40e93SBarry Smith   const PetscScalar *x;
995547795f9SHong Zhang 
996547795f9SHong Zhang   PetscFunctionBegin;
997547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
998e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
999547795f9SHong Zhang 
1000547795f9SHong Zhang   /* diagonal part */
1001547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1002547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1003547795f9SHong Zhang 
1004547795f9SHong Zhang   /* subdiagonal part */
1005547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1006547795f9SHong Zhang 
1007547795f9SHong Zhang   /* copy x into the vec slvec0 */
1008547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10096de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1010547795f9SHong Zhang 
1011547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1012547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
10136de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1014547795f9SHong Zhang 
1015547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1016547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1017547795f9SHong Zhang   /* supperdiagonal part */
1018547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1019547795f9SHong Zhang   PetscFunctionReturn(0);
1020547795f9SHong Zhang }
1021547795f9SHong Zhang 
1022547795f9SHong Zhang #undef __FUNCT__
1023a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
1024dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1025a9d4b620SHong Zhang {
1026a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1027dfbe8321SBarry Smith   PetscErrorCode    ierr;
1028d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1029d9ca1df4SBarry Smith   PetscScalar       *from;
1030d9ca1df4SBarry Smith   const PetscScalar *x;
1031a9d4b620SHong Zhang 
1032a9d4b620SHong Zhang   PetscFunctionBegin;
1033a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1034e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1035a9d4b620SHong Zhang 
1036a9d4b620SHong Zhang   /* diagonal part */
1037a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1038fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1039a9d4b620SHong Zhang 
1040a9d4b620SHong Zhang   /* subdiagonal part */
1041a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1042fc165ae2SBarry Smith 
1043a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10441ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1045d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1046a9d4b620SHong Zhang 
1047fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1048fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1049d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1050fc165ae2SBarry Smith 
1051fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1052ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1053a9d4b620SHong Zhang   /* supperdiagonal part */
1054a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1055a9d4b620SHong Zhang   PetscFunctionReturn(0);
1056a9d4b620SHong Zhang }
1057a9d4b620SHong Zhang 
1058a9d4b620SHong Zhang #undef __FUNCT__
105940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
1060dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1061a30f8f8cSSatish Balay {
1062a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1063dfbe8321SBarry Smith   PetscErrorCode ierr;
10641302d50aSBarry Smith   PetscInt       nt;
1065a30f8f8cSSatish Balay 
1066a30f8f8cSSatish Balay   PetscFunctionBegin;
1067a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1068e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1069e7e72b3dSBarry Smith 
1070a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1071e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
107265d70643SHong Zhang 
1073ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1074b941877fSHong Zhang   /* do diagonal part */
1075b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1076b941877fSHong Zhang   /* do supperdiagonal part */
1077ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1078b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1079b941877fSHong Zhang   /* do subdiagonal part */
1080b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1081ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1082ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1083a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1084a30f8f8cSSatish Balay }
1085a30f8f8cSSatish Balay 
10864a2ae208SSatish Balay #undef __FUNCT__
10874a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1088dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1089a30f8f8cSSatish Balay {
1090de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1091dfbe8321SBarry Smith   PetscErrorCode    ierr;
1092d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1093d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1094d9ca1df4SBarry Smith   const PetscScalar *x;
1095a9d4b620SHong Zhang 
1096a9d4b620SHong Zhang   PetscFunctionBegin;
1097a9d4b620SHong Zhang   /*
1098ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
10990ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1100a9d4b620SHong Zhang   */
1101a9d4b620SHong Zhang   /* diagonal part */
1102a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11032dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1104a9d4b620SHong Zhang 
1105a9d4b620SHong Zhang   /* subdiagonal part */
1106a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1107a9d4b620SHong Zhang 
1108a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11091ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1110d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1111a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
11121ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1113a9d4b620SHong Zhang 
1114ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1115d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1116ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1117a9d4b620SHong Zhang 
1118a9d4b620SHong Zhang   /* supperdiagonal part */
1119a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1120a9d4b620SHong Zhang   PetscFunctionReturn(0);
1121a9d4b620SHong Zhang }
1122a9d4b620SHong Zhang 
1123a9d4b620SHong Zhang #undef __FUNCT__
1124a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1125dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1126a9d4b620SHong Zhang {
1127a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1128dfbe8321SBarry Smith   PetscErrorCode ierr;
1129a30f8f8cSSatish Balay 
1130a30f8f8cSSatish Balay   PetscFunctionBegin;
1131ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1132b941877fSHong Zhang   /* do diagonal part */
1133b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1134b941877fSHong Zhang   /* do supperdiagonal part */
1135ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1136de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1137de8b6608SHong Zhang 
1138b941877fSHong Zhang   /* do subdiagonal part */
1139a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1140ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1141ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1142a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1143a30f8f8cSSatish Balay }
1144a30f8f8cSSatish Balay 
1145a30f8f8cSSatish Balay /*
1146a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1147a30f8f8cSSatish Balay    diagonal block
1148a30f8f8cSSatish Balay */
11494a2ae208SSatish Balay #undef __FUNCT__
11504a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1151dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1152a30f8f8cSSatish Balay {
1153a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1154dfbe8321SBarry Smith   PetscErrorCode ierr;
1155a30f8f8cSSatish Balay 
1156a30f8f8cSSatish Balay   PetscFunctionBegin;
1157e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1158a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1159a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1160a30f8f8cSSatish Balay }
1161a30f8f8cSSatish Balay 
11624a2ae208SSatish Balay #undef __FUNCT__
11634a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1164f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1165a30f8f8cSSatish Balay {
1166a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1167dfbe8321SBarry Smith   PetscErrorCode ierr;
1168a30f8f8cSSatish Balay 
1169a30f8f8cSSatish Balay   PetscFunctionBegin;
1170f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1171f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1172a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1173a30f8f8cSSatish Balay }
1174a30f8f8cSSatish Balay 
11754a2ae208SSatish Balay #undef __FUNCT__
11764a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11771302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1178a30f8f8cSSatish Balay {
1179d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1180d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1181d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1182d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1183d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1184899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1185d0d4cfc2SHong Zhang 
1186a30f8f8cSSatish Balay   PetscFunctionBegin;
1187e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1188d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1189d0d4cfc2SHong Zhang 
1190d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1191d0d4cfc2SHong Zhang     /*
1192d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1193d0d4cfc2SHong Zhang     */
1194d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1195d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1196d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1197d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1198d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
119926fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1200d0d4cfc2SHong Zhang     }
1201dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1202d0d4cfc2SHong Zhang   }
1203d0d4cfc2SHong Zhang 
1204e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1205d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1206d0d4cfc2SHong Zhang 
1207d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1208d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1209d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1210d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1211d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1212d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1213d0d4cfc2SHong Zhang 
1214d0d4cfc2SHong Zhang   cmap = mat->garray;
1215d0d4cfc2SHong Zhang   if (v  || idx) {
1216d0d4cfc2SHong Zhang     if (nztot) {
1217d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1218d0d4cfc2SHong Zhang       PetscInt imark = -1;
1219d0d4cfc2SHong Zhang       if (v) {
1220d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1221d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1222d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1223d0d4cfc2SHong Zhang           else break;
1224d0d4cfc2SHong Zhang         }
1225d0d4cfc2SHong Zhang         imark = i;
1226d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1227d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1228d0d4cfc2SHong Zhang       }
1229d0d4cfc2SHong Zhang       if (idx) {
1230d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1231d0d4cfc2SHong Zhang         if (imark > -1) {
1232d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1233d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1234d0d4cfc2SHong Zhang           }
1235d0d4cfc2SHong Zhang         } else {
1236d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
123726fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1238d0d4cfc2SHong Zhang             else break;
1239d0d4cfc2SHong Zhang           }
1240d0d4cfc2SHong Zhang           imark = i;
1241d0d4cfc2SHong Zhang         }
1242d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1243d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1244d0d4cfc2SHong Zhang       }
1245d0d4cfc2SHong Zhang     } else {
1246d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1247d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1248d0d4cfc2SHong Zhang     }
1249d0d4cfc2SHong Zhang   }
1250d0d4cfc2SHong Zhang   *nz  = nztot;
1251d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1252d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1254a30f8f8cSSatish Balay }
1255a30f8f8cSSatish Balay 
12564a2ae208SSatish Balay #undef __FUNCT__
12574a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12581302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1259a30f8f8cSSatish Balay {
1260a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1261a30f8f8cSSatish Balay 
1262a30f8f8cSSatish Balay   PetscFunctionBegin;
1263e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1264a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1265a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1266a30f8f8cSSatish Balay }
1267a30f8f8cSSatish Balay 
12684a2ae208SSatish Balay #undef __FUNCT__
1269d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1270d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1271d0d4cfc2SHong Zhang {
1272d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1273d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1274d0d4cfc2SHong Zhang 
1275d0d4cfc2SHong Zhang   PetscFunctionBegin;
1276d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1277d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1278d0d4cfc2SHong Zhang }
1279d0d4cfc2SHong Zhang #undef __FUNCT__
1280d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1281d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1282d0d4cfc2SHong Zhang {
1283d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1284d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1285d0d4cfc2SHong Zhang 
1286d0d4cfc2SHong Zhang   PetscFunctionBegin;
1287d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1288d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1289d0d4cfc2SHong Zhang }
1290d0d4cfc2SHong Zhang 
1291d0d4cfc2SHong Zhang #undef __FUNCT__
129299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
129399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
129499cafbc1SBarry Smith {
129599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
129699cafbc1SBarry Smith   PetscErrorCode ierr;
129799cafbc1SBarry Smith 
129899cafbc1SBarry Smith   PetscFunctionBegin;
129999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
130099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
130199cafbc1SBarry Smith   PetscFunctionReturn(0);
130299cafbc1SBarry Smith }
130399cafbc1SBarry Smith 
130499cafbc1SBarry Smith #undef __FUNCT__
130599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
130699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
130799cafbc1SBarry Smith {
130899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
130999cafbc1SBarry Smith   PetscErrorCode ierr;
131099cafbc1SBarry Smith 
131199cafbc1SBarry Smith   PetscFunctionBegin;
131299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
131399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
131499cafbc1SBarry Smith   PetscFunctionReturn(0);
131599cafbc1SBarry Smith }
131699cafbc1SBarry Smith 
131736032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
131836032a97SHong Zhang    Input: isrow       - distributed(parallel),
131936032a97SHong Zhang           iscol_local - locally owned (seq)
132036032a97SHong Zhang */
132199cafbc1SBarry Smith #undef __FUNCT__
132236032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
132336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13248f46ffcaSHong Zhang {
13258f46ffcaSHong Zhang   PetscErrorCode ierr;
13268f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13278f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
132836032a97SHong Zhang 
132936032a97SHong Zhang   PetscFunctionBegin;
13308f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13318f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13321098a8e8SHong Zhang   if (sz1 > sz2) {
13331098a8e8SHong Zhang     *flg = PETSC_FALSE;
13341098a8e8SHong Zhang     PetscFunctionReturn(0);
13351098a8e8SHong Zhang   }
13368f46ffcaSHong Zhang 
13378f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13388f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13398f46ffcaSHong Zhang 
13408f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13418f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
13428f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
13438f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
13448f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13458f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13468f46ffcaSHong Zhang 
13478f46ffcaSHong Zhang   nmatch=0;
13488f46ffcaSHong Zhang   k     = 0;
13498f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
13508f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
13518f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13528f46ffcaSHong Zhang         k = j; nmatch++;
13538f46ffcaSHong Zhang         break;
13548f46ffcaSHong Zhang       }
13558f46ffcaSHong Zhang     }
13568f46ffcaSHong Zhang   }
13578f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13588f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13598f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
13608f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
13611098a8e8SHong Zhang   if (nmatch < sz1) {
13621098a8e8SHong Zhang     *flg = PETSC_FALSE;
13631098a8e8SHong Zhang   } else {
13641098a8e8SHong Zhang     *flg = PETSC_TRUE;
13651098a8e8SHong Zhang   }
136636032a97SHong Zhang   PetscFunctionReturn(0);
13678f46ffcaSHong Zhang }
136836032a97SHong Zhang 
136936032a97SHong Zhang #undef __FUNCT__
137036032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
137136032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
137236032a97SHong Zhang {
137336032a97SHong Zhang   PetscErrorCode ierr;
137436032a97SHong Zhang   IS             iscol_local;
137536032a97SHong Zhang   PetscInt       csize;
137636032a97SHong Zhang   PetscBool      isequal;
137736032a97SHong Zhang 
137836032a97SHong Zhang   PetscFunctionBegin;
137936032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
138036032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
138136032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
138236032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
138336032a97SHong Zhang   } else {
138436032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
138536032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
138636032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
13878f46ffcaSHong Zhang   }
13888f46ffcaSHong Zhang 
13898f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
139036032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
13918f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
13928f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
13938f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
13948f46ffcaSHong Zhang   }
13958f46ffcaSHong Zhang   PetscFunctionReturn(0);
13968f46ffcaSHong Zhang }
13978f46ffcaSHong Zhang 
13988f46ffcaSHong Zhang #undef __FUNCT__
13994a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1400dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1401a30f8f8cSSatish Balay {
1402a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1403dfbe8321SBarry Smith   PetscErrorCode ierr;
1404a30f8f8cSSatish Balay 
1405a30f8f8cSSatish Balay   PetscFunctionBegin;
1406a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1407a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1408a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1409a30f8f8cSSatish Balay }
1410a30f8f8cSSatish Balay 
14114a2ae208SSatish Balay #undef __FUNCT__
14124a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1413dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1414a30f8f8cSSatish Balay {
1415a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1416a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1417dfbe8321SBarry Smith   PetscErrorCode ierr;
1418a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1419a30f8f8cSSatish Balay 
1420a30f8f8cSSatish Balay   PetscFunctionBegin;
1421d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142226fbe8dcSKarl Rupp 
1423a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
142426fbe8dcSKarl Rupp 
1425a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1426a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
142726fbe8dcSKarl Rupp 
1428a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
142926fbe8dcSKarl Rupp 
1430a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1431a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1432a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1433a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1434a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1435a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1436a30f8f8cSSatish Balay     info->memory       = isend[3];
1437a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1438a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1439b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
144026fbe8dcSKarl Rupp 
1441a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1442a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1443a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1444a30f8f8cSSatish Balay     info->memory       = irecv[3];
1445a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1446a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1447b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
144826fbe8dcSKarl Rupp 
1449a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1450a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1451a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1452a30f8f8cSSatish Balay     info->memory       = irecv[3];
1453a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1454f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1455a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1456a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1457a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1458a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1459a30f8f8cSSatish Balay }
1460a30f8f8cSSatish Balay 
14614a2ae208SSatish Balay #undef __FUNCT__
14624a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1463ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1464a30f8f8cSSatish Balay {
1465a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1466d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1467dfbe8321SBarry Smith   PetscErrorCode ierr;
1468a30f8f8cSSatish Balay 
1469a30f8f8cSSatish Balay   PetscFunctionBegin;
1470e98b92d7SKris Buschelman   switch (op) {
1471512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1472e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1474a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1475e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147643674050SBarry Smith     MatCheckPreallocated(A,1);
14774e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14784e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1479e98b92d7SKris Buschelman     break;
1480e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
148143674050SBarry Smith     MatCheckPreallocated(A,1);
14824e0d8c25SBarry Smith     a->roworiented = flg;
148326fbe8dcSKarl Rupp 
14844e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14854e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1486e98b92d7SKris Buschelman     break;
14874e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1488290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1489e98b92d7SKris Buschelman     break;
1490e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14914e0d8c25SBarry Smith     a->donotstash = flg;
1492e98b92d7SKris Buschelman     break;
1493e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
14944e0d8c25SBarry Smith     a->ht_flag = flg;
1495e98b92d7SKris Buschelman     break;
14969a4540c5SBarry Smith   case MAT_HERMITIAN:
149743674050SBarry Smith     MatCheckPreallocated(A,1);
1498e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1499eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
150026fbe8dcSKarl Rupp 
1501547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1502eeffb40dSHong Zhang     break;
1503ffa07934SHong Zhang   case MAT_SPD:
1504ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1505ffa07934SHong Zhang     A->spd     = flg;
1506ffa07934SHong Zhang     if (flg) {
1507ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1508ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1509ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1510ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1511ffa07934SHong Zhang     }
1512ffa07934SHong Zhang     break;
151377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
151443674050SBarry Smith     MatCheckPreallocated(A,1);
1515eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1516eeffb40dSHong Zhang     break;
151777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
151843674050SBarry Smith     MatCheckPreallocated(A,1);
1519eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1520eeffb40dSHong Zhang     break;
15219a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1522e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1523290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
152477e54ba9SKris Buschelman     break;
1525d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15264e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1527d0d4cfc2SHong Zhang     break;
1528d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15294e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1530d0d4cfc2SHong Zhang     break;
1531d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15324e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1533d0d4cfc2SHong Zhang     break;
1534e98b92d7SKris Buschelman   default:
1535e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1536a30f8f8cSSatish Balay   }
1537a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1538a30f8f8cSSatish Balay }
1539a30f8f8cSSatish Balay 
15404a2ae208SSatish Balay #undef __FUNCT__
15418115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1542fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1543a30f8f8cSSatish Balay {
1544dfbe8321SBarry Smith   PetscErrorCode ierr;
15456e111a19SKarl Rupp 
1546a30f8f8cSSatish Balay   PetscFunctionBegin;
1547815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1548999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1549fc4dec0aSBarry Smith   }
15508115998fSBarry Smith   PetscFunctionReturn(0);
1551a30f8f8cSSatish Balay }
1552a30f8f8cSSatish Balay 
15534a2ae208SSatish Balay #undef __FUNCT__
15544a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1555dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1556a30f8f8cSSatish Balay {
1557a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1558a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1559dfbe8321SBarry Smith   PetscErrorCode ierr;
15605e90f9d9SHong Zhang   PetscInt       nv,m,n;
1561ace3abfcSBarry Smith   PetscBool      flg;
1562a30f8f8cSSatish Balay 
1563a30f8f8cSSatish Balay   PetscFunctionBegin;
1564a30f8f8cSSatish Balay   if (ll != rr) {
1565b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1566e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1567a30f8f8cSSatish Balay   }
1568b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1569b3bf805bSHong Zhang 
15705e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1571e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1572b3bf805bSHong Zhang 
15735e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1574e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15755e90f9d9SHong Zhang 
1576ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15775e90f9d9SHong Zhang 
15785e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
15790298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
15805e90f9d9SHong Zhang 
15815e90f9d9SHong Zhang   /* scale the diagonal part */
1582a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1583a30f8f8cSSatish Balay 
15845e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1585ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15860298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1587a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1588a30f8f8cSSatish Balay }
1589a30f8f8cSSatish Balay 
15904a2ae208SSatish Balay #undef __FUNCT__
15914a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1592dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1593a30f8f8cSSatish Balay {
1594f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1595dfbe8321SBarry Smith   PetscErrorCode ierr;
1596a30f8f8cSSatish Balay 
1597a30f8f8cSSatish Balay   PetscFunctionBegin;
1598a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1599a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1600a30f8f8cSSatish Balay }
1601a30f8f8cSSatish Balay 
16026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1603a30f8f8cSSatish Balay 
16044a2ae208SSatish Balay #undef __FUNCT__
16054a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1606ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1607a30f8f8cSSatish Balay {
1608a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1609a30f8f8cSSatish Balay   Mat            a,b,c,d;
1610ace3abfcSBarry Smith   PetscBool      flg;
1611dfbe8321SBarry Smith   PetscErrorCode ierr;
1612a30f8f8cSSatish Balay 
1613a30f8f8cSSatish Balay   PetscFunctionBegin;
1614a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1615a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1616a30f8f8cSSatish Balay 
1617a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1618abc0a331SBarry Smith   if (flg) {
1619a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1620a30f8f8cSSatish Balay   }
1621b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1622a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1623a30f8f8cSSatish Balay }
1624a30f8f8cSSatish Balay 
16254a2ae208SSatish Balay #undef __FUNCT__
16263c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
16273c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16283c896bc6SHong Zhang {
16293c896bc6SHong Zhang   PetscErrorCode ierr;
16303c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
16313c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
16323c896bc6SHong Zhang 
16333c896bc6SHong Zhang   PetscFunctionBegin;
16343c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16353c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1636d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16373c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1638d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16393c896bc6SHong Zhang   } else {
16403c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16413c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16423c896bc6SHong Zhang   }
16433c896bc6SHong Zhang   PetscFunctionReturn(0);
16443c896bc6SHong Zhang }
16453c896bc6SHong Zhang 
16463c896bc6SHong Zhang #undef __FUNCT__
16474994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
16484994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1649273d9f13SBarry Smith {
1650dfbe8321SBarry Smith   PetscErrorCode ierr;
1651273d9f13SBarry Smith 
1652273d9f13SBarry Smith   PetscFunctionBegin;
1653535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1654273d9f13SBarry Smith   PetscFunctionReturn(0);
1655273d9f13SBarry Smith }
1656a5e6ed63SBarry Smith 
16574fe895cdSHong Zhang #undef __FUNCT__
16584fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
16594fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16604fe895cdSHong Zhang {
16614fe895cdSHong Zhang   PetscErrorCode ierr;
16624fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16634fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16644fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16654fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16664fe895cdSHong Zhang 
16674fe895cdSHong Zhang   PetscFunctionBegin;
16684fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16694fe895cdSHong Zhang     PetscScalar alpha = a;
16704fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16714fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1672c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
16738b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16744fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16754fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1676c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
16778b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1678a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1679ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1680ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1681ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1682ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
16834fe895cdSHong Zhang   } else {
16844de5dceeSHong Zhang     Mat      B;
16854de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
16864de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1687d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
16884de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
16894de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
16904de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
16914de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
16924de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
16934de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
16944de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
16954de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
16964de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
16974de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
16984de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
16994de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
170028be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
17014de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
17024de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1703d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17044de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17054fe895cdSHong Zhang   }
17064fe895cdSHong Zhang   PetscFunctionReturn(0);
17074fe895cdSHong Zhang }
17084fe895cdSHong Zhang 
1709a5e6ed63SBarry Smith #undef __FUNCT__
1710a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
17111302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1712a5e6ed63SBarry Smith {
17136849ba73SBarry Smith   PetscErrorCode ierr;
17141302d50aSBarry Smith   PetscInt       i;
1715afebec48SHong Zhang   PetscBool      flg;
1716a5e6ed63SBarry Smith 
17176849ba73SBarry Smith   PetscFunctionBegin;
1718afebec48SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1719a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1720a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1721afebec48SHong Zhang     if (!flg) {
1722b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1723a5e6ed63SBarry Smith     }
17244dcd73b1SHong Zhang   }
1725a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1726a5e6ed63SBarry Smith }
1727a5e6ed63SBarry Smith 
17287d68702bSBarry Smith #undef __FUNCT__
17297d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ"
17307d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17317d68702bSBarry Smith {
17327d68702bSBarry Smith   PetscErrorCode ierr;
17337d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17346f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17357d68702bSBarry Smith 
17367d68702bSBarry Smith   PetscFunctionBegin;
17376f33a894SBarry Smith   if (!Y->preallocated) {
17387d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17396f33a894SBarry Smith   } else if (!aij->nz) {
1740b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17416f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1742b83222d8SBarry Smith     aij->nonew = nonew;
17437d68702bSBarry Smith   }
17447d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
17457d68702bSBarry Smith   PetscFunctionReturn(0);
17467d68702bSBarry Smith }
17477d68702bSBarry Smith 
17483b49f96aSBarry Smith #undef __FUNCT__
17493b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ"
17503b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
17513b49f96aSBarry Smith {
17523b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
17533b49f96aSBarry Smith   PetscErrorCode ierr;
17543b49f96aSBarry Smith 
17553b49f96aSBarry Smith   PetscFunctionBegin;
17563b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
17573b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
17583b49f96aSBarry Smith   if (d) {
17593b49f96aSBarry Smith     PetscInt rstart;
17603b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
17613b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
17623b49f96aSBarry Smith 
17633b49f96aSBarry Smith   }
17643b49f96aSBarry Smith   PetscFunctionReturn(0);
17653b49f96aSBarry Smith }
17663b49f96aSBarry Smith 
1767*a5b7ff6bSBarry Smith #undef __FUNCT__
1768*a5b7ff6bSBarry Smith #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1769*a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1770*a5b7ff6bSBarry Smith {
1771*a5b7ff6bSBarry Smith   PetscFunctionBegin;
1772*a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1773*a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1774*a5b7ff6bSBarry Smith }
17753b49f96aSBarry Smith 
1776a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17773964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1778a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1779a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1780a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
178197304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1782431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1783431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1784a30f8f8cSSatish Balay                                        0,
1785a30f8f8cSSatish Balay                                        0,
1786a30f8f8cSSatish Balay                                        0,
178797304618SKris Buschelman                                /* 10*/ 0,
1788a30f8f8cSSatish Balay                                        0,
1789a30f8f8cSSatish Balay                                        0,
179041f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1791a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
179297304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1793a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1794a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1795a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1796a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
179797304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1798a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1799a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1800a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1801d519adbfSMatthew Knepley                                /* 24*/ 0,
1802a30f8f8cSSatish Balay                                        0,
1803a30f8f8cSSatish Balay                                        0,
1804a30f8f8cSSatish Balay                                        0,
1805a30f8f8cSSatish Balay                                        0,
18064994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1807b5df2d14SHong Zhang                                        0,
1808a30f8f8cSSatish Balay                                        0,
1809*a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1810a30f8f8cSSatish Balay                                        0,
1811d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1812a30f8f8cSSatish Balay                                        0,
1813a30f8f8cSSatish Balay                                        0,
1814a30f8f8cSSatish Balay                                        0,
1815a30f8f8cSSatish Balay                                        0,
1816d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1817a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1818d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1819a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18203c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1821d519adbfSMatthew Knepley                                /* 44*/ 0,
1822a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18237d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1824a30f8f8cSSatish Balay                                        0,
1825a30f8f8cSSatish Balay                                        0,
1826f73d5cc4SBarry Smith                                /* 49*/ 0,
1827a30f8f8cSSatish Balay                                        0,
1828a30f8f8cSSatish Balay                                        0,
1829a30f8f8cSSatish Balay                                        0,
1830a30f8f8cSSatish Balay                                        0,
1831d519adbfSMatthew Knepley                                /* 54*/ 0,
1832a30f8f8cSSatish Balay                                        0,
1833a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1834a30f8f8cSSatish Balay                                        0,
1835a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18368f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1837a30f8f8cSSatish Balay                                        0,
1838a30f8f8cSSatish Balay                                        0,
1839357abbc8SBarry Smith                                        0,
184024d5174aSHong Zhang                                        0,
1841d519adbfSMatthew Knepley                                /* 64*/ 0,
184224d5174aSHong Zhang                                        0,
184324d5174aSHong Zhang                                        0,
184424d5174aSHong Zhang                                        0,
184524d5174aSHong Zhang                                        0,
1846d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
184724d5174aSHong Zhang                                        0,
184897304618SKris Buschelman                                        0,
184997304618SKris Buschelman                                        0,
185097304618SKris Buschelman                                        0,
1851d519adbfSMatthew Knepley                                /* 74*/ 0,
185297304618SKris Buschelman                                        0,
185397304618SKris Buschelman                                        0,
185497304618SKris Buschelman                                        0,
185597304618SKris Buschelman                                        0,
1856d519adbfSMatthew Knepley                                /* 79*/ 0,
185797304618SKris Buschelman                                        0,
185897304618SKris Buschelman                                        0,
185997304618SKris Buschelman                                        0,
18605bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1861d519adbfSMatthew Knepley                                /* 84*/ 0,
1862865e5f61SKris Buschelman                                        0,
1863865e5f61SKris Buschelman                                        0,
1864865e5f61SKris Buschelman                                        0,
1865865e5f61SKris Buschelman                                        0,
1866d519adbfSMatthew Knepley                                /* 89*/ 0,
1867865e5f61SKris Buschelman                                        0,
1868865e5f61SKris Buschelman                                        0,
1869865e5f61SKris Buschelman                                        0,
1870865e5f61SKris Buschelman                                        0,
1871d519adbfSMatthew Knepley                                /* 94*/ 0,
1872865e5f61SKris Buschelman                                        0,
1873865e5f61SKris Buschelman                                        0,
187499cafbc1SBarry Smith                                        0,
187599cafbc1SBarry Smith                                        0,
1876d519adbfSMatthew Knepley                                /* 99*/ 0,
187799cafbc1SBarry Smith                                        0,
187899cafbc1SBarry Smith                                        0,
187999cafbc1SBarry Smith                                        0,
188099cafbc1SBarry Smith                                        0,
1881d519adbfSMatthew Knepley                                /*104*/ 0,
188299cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1883d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1884d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
188595936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
188695936485SShri Abhyankar                                /*109*/ 0,
188795936485SShri Abhyankar                                        0,
188895936485SShri Abhyankar                                        0,
188995936485SShri Abhyankar                                        0,
18903b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
189195936485SShri Abhyankar                                /*114*/ 0,
189295936485SShri Abhyankar                                        0,
189395936485SShri Abhyankar                                        0,
189495936485SShri Abhyankar                                        0,
189595936485SShri Abhyankar                                        0,
189695936485SShri Abhyankar                                /*119*/ 0,
189795936485SShri Abhyankar                                        0,
189895936485SShri Abhyankar                                        0,
18993964eb88SJed Brown                                        0,
19003964eb88SJed Brown                                        0,
19013964eb88SJed Brown                                /*124*/ 0,
19023964eb88SJed Brown                                        0,
19033964eb88SJed Brown                                        0,
19043964eb88SJed Brown                                        0,
19053964eb88SJed Brown                                        0,
19063964eb88SJed Brown                                /*129*/ 0,
19073964eb88SJed Brown                                        0,
19083964eb88SJed Brown                                        0,
19093964eb88SJed Brown                                        0,
19103964eb88SJed Brown                                        0,
19113964eb88SJed Brown                                /*134*/ 0,
19123964eb88SJed Brown                                        0,
19133964eb88SJed Brown                                        0,
19143964eb88SJed Brown                                        0,
19153964eb88SJed Brown                                        0,
19163964eb88SJed Brown                                /*139*/ 0,
1917f9426fe0SMark Adams                                        0,
191859f5e6ceSHong Zhang                                        0,
191959f5e6ceSHong Zhang                                        0,
192059f5e6ceSHong Zhang                                        0,
192159f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
192299cafbc1SBarry Smith };
1923a30f8f8cSSatish Balay 
19244a2ae208SSatish Balay #undef __FUNCT__
1925a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1926b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1927a23d5eceSKris Buschelman {
1928a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1929dfbe8321SBarry Smith   PetscErrorCode ierr;
1930535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1931a23d5eceSKris Buschelman 
1932a23d5eceSKris Buschelman   PetscFunctionBegin;
193333d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
193426283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
193526283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1936e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1937899cda47SBarry Smith 
1938a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1939d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1940d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1941c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1942a23d5eceSKris Buschelman 
1943d0f46423SBarry Smith   B->rmap->bs = bs;
1944a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1945a23d5eceSKris Buschelman   b->mbs      = mbs;
1946a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1947de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1948de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1949a23d5eceSKris Buschelman 
1950a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1951d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1952a23d5eceSKris Buschelman   }
1953d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1954d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1955a23d5eceSKris Buschelman 
1956d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1957d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1958a23d5eceSKris Buschelman 
1959526dfc15SBarry Smith   if (!B->preallocated) {
1960f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1961d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
19629c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
19633bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1964f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1965d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
19664aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
19673bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1968ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1969526dfc15SBarry Smith   }
1970a23d5eceSKris Buschelman 
1971526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1972526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
197326fbe8dcSKarl Rupp 
1974526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1975a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1976a23d5eceSKris Buschelman }
1977a23d5eceSKris Buschelman 
1978dfb205c3SBarry Smith #undef __FUNCT__
1979dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1980dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1981dfb205c3SBarry Smith {
1982dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1983dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1984dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1985dfb205c3SBarry Smith   PetscScalar    *values=0;
1986dfb205c3SBarry Smith   PetscErrorCode ierr;
1987dfb205c3SBarry Smith 
1988dfb205c3SBarry Smith   PetscFunctionBegin;
1989ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1990dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1991dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1992dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1993dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1994e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1995dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1996dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1997dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1998dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1999dfb205c3SBarry Smith 
2000dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2001dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2002dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2003dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2004dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2005dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
2006dfb205c3SBarry Smith     JJ     = jj + ii[i];
2007dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
2008dfb205c3SBarry Smith       if (*JJ >= cstart) break;
2009dfb205c3SBarry Smith       JJ++;
2010dfb205c3SBarry Smith     }
2011dfb205c3SBarry Smith     d = 0;
2012dfb205c3SBarry Smith     for (; j<nz; j++) {
2013dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2014dfb205c3SBarry Smith       d++;
2015dfb205c3SBarry Smith     }
2016dfb205c3SBarry Smith     d_nnz[i] = d;
2017dfb205c3SBarry Smith     o_nnz[i] = nz - d;
2018dfb205c3SBarry Smith   }
2019dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2020dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2021dfb205c3SBarry Smith 
2022dfb205c3SBarry Smith   values = (PetscScalar*)V;
2023dfb205c3SBarry Smith   if (!values) {
2024785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2025dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2026dfb205c3SBarry Smith   }
2027dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2028dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2029dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2030dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2031dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2032dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2033dfb205c3SBarry Smith   }
2034dfb205c3SBarry Smith 
2035dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2036dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2037dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20387827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2039dfb205c3SBarry Smith   PetscFunctionReturn(0);
2040dfb205c3SBarry Smith }
2041dfb205c3SBarry Smith 
20420bad9183SKris Buschelman /*MC
2043fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2044828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2045828413b8SBarry Smith    the matrix is stored.
2046828413b8SBarry Smith 
2047828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2048828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
20490bad9183SKris Buschelman 
20500bad9183SKris Buschelman    Options Database Keys:
20510bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20520bad9183SKris Buschelman 
20530bad9183SKris Buschelman   Level: beginner
20540bad9183SKris Buschelman 
20550bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
20560bad9183SKris Buschelman M*/
20570bad9183SKris Buschelman 
2058cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
2059aa5a9175SDahai Guo 
2060a23d5eceSKris Buschelman #undef __FUNCT__
20614a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
20628cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2063b5df2d14SHong Zhang {
2064b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2065dfbe8321SBarry Smith   PetscErrorCode ierr;
206694ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2067b5df2d14SHong Zhang 
2068b5df2d14SHong Zhang   PetscFunctionBegin;
2069b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2070b0a32e0cSBarry Smith   B->data = (void*)b;
2071b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2072b5df2d14SHong Zhang 
2073b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2074b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2075b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2076b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
207726fbe8dcSKarl Rupp 
2078ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2079ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2080b5df2d14SHong Zhang 
2081b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2082854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2083b5df2d14SHong Zhang 
2084b5df2d14SHong Zhang   /* build cache for off array entries formed */
2085ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
208626fbe8dcSKarl Rupp 
2087b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20880298fd71SBarry Smith   b->colmap      = NULL;
20890298fd71SBarry Smith   b->garray      = NULL;
2090b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2091b5df2d14SHong Zhang 
2092b5df2d14SHong Zhang   /* stuff used in block assembly */
2093b5df2d14SHong Zhang   b->barray = 0;
2094b5df2d14SHong Zhang 
2095b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2096b5df2d14SHong Zhang   b->lvec    = 0;
2097b5df2d14SHong Zhang   b->Mvctx   = 0;
209840781036SHong Zhang   b->slvec0  = 0;
209940781036SHong Zhang   b->slvec0b = 0;
210040781036SHong Zhang   b->slvec1  = 0;
210140781036SHong Zhang   b->slvec1a = 0;
210240781036SHong Zhang   b->slvec1b = 0;
210340781036SHong Zhang   b->sMvctx  = 0;
2104b5df2d14SHong Zhang 
2105b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2106b5df2d14SHong Zhang   b->rowindices   = 0;
2107b5df2d14SHong Zhang   b->rowvalues    = 0;
2108b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2109b5df2d14SHong Zhang 
2110b5df2d14SHong Zhang   /* hash table stuff */
2111b5df2d14SHong Zhang   b->ht           = 0;
2112b5df2d14SHong Zhang   b->hd           = 0;
2113b5df2d14SHong Zhang   b->ht_size      = 0;
2114b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2115b5df2d14SHong Zhang   b->ht_fact      = 0;
2116b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2117b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2118b5df2d14SHong Zhang 
21197a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
21207a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21217a868f3eSHong Zhang 
212259ffdab8SBarry Smith   b->in_loc = 0;
212359ffdab8SBarry Smith   b->v_loc  = 0;
212459ffdab8SBarry Smith   b->n_loc  = 0;
212594ae4db5SBarry Smith 
2126bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2127bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2128bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2129bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
21306214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21316214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
21326214f412SHong Zhang #endif
2133aa5a9175SDahai Guo 
213423ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
213523ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
213623ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
213723ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
213826fbe8dcSKarl Rupp 
213917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
214094ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
214194ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
214294ae4db5SBarry Smith   if (flg) {
214394ae4db5SBarry Smith     PetscReal fact = 1.39;
214494ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
214594ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
214694ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
214794ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
214894ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
214994ae4db5SBarry Smith   }
215094ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2151b5df2d14SHong Zhang   PetscFunctionReturn(0);
2152b5df2d14SHong Zhang }
2153b5df2d14SHong Zhang 
2154209238afSKris Buschelman /*MC
2155002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2156209238afSKris Buschelman 
2157209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2158209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2159209238afSKris Buschelman 
2160209238afSKris Buschelman    Options Database Keys:
2161209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2162209238afSKris Buschelman 
2163209238afSKris Buschelman   Level: beginner
2164209238afSKris Buschelman 
2165209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2166209238afSKris Buschelman M*/
2167209238afSKris Buschelman 
21684a2ae208SSatish Balay #undef __FUNCT__
21694a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
2170b5df2d14SHong Zhang /*@C
2171b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2172b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2173b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2174b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2175b5df2d14SHong Zhang 
2176b5df2d14SHong Zhang    Collective on Mat
2177b5df2d14SHong Zhang 
2178b5df2d14SHong Zhang    Input Parameters:
21791c4f3114SJed Brown +  B - the matrix
2180bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2181bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2182b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2183b5df2d14SHong Zhang            submatrix  (same for all local rows)
2184b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
21856d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
21860298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
218795742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2188b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2189b5df2d14SHong Zhang            submatrix (same for all local rows).
2190b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2191c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
21920298fd71SBarry Smith            (possibly different for each block row) or NULL.
2193b5df2d14SHong Zhang 
2194b5df2d14SHong Zhang 
2195b5df2d14SHong Zhang    Options Database Keys:
2196b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2197b5df2d14SHong Zhang                      block calculations (much slower)
2198b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2199b5df2d14SHong Zhang 
2200b5df2d14SHong Zhang    Notes:
2201b5df2d14SHong Zhang 
2202b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2203b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2204b5df2d14SHong Zhang 
220549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
220649a6f317SBarry Smith 
2207b5df2d14SHong Zhang    Storage Information:
2208b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2209b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2210b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2211b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2212b5df2d14SHong Zhang 
2213b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2214b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
22150298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2216b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2217b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2218b5df2d14SHong Zhang 
2219aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2220aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2221aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2222aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2223aa95bbe8SBarry Smith 
2224b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2225b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2226b5df2d14SHong Zhang 
2227b5df2d14SHong Zhang .vb
2228b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2229a4b1a0f6SJed Brown           --------------------------
2230c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2231c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2232c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2233a4b1a0f6SJed Brown           --------------------------
2234b5df2d14SHong Zhang .ve
2235b5df2d14SHong Zhang 
2236b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2237b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22386d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22396d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2240b5df2d14SHong Zhang 
22416d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22426d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2243c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2244c2fc9fa9SBarry Smith 
2245b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2246b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2247b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2248b5df2d14SHong Zhang    matrices.
2249b5df2d14SHong Zhang 
2250b5df2d14SHong Zhang    Level: intermediate
2251b5df2d14SHong Zhang 
2252b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2253b5df2d14SHong Zhang 
2254ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2255b5df2d14SHong Zhang @*/
22567087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2257b5df2d14SHong Zhang {
22584ac538c5SBarry Smith   PetscErrorCode ierr;
2259b5df2d14SHong Zhang 
2260b5df2d14SHong Zhang   PetscFunctionBegin;
22616ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22626ba663aaSJed Brown   PetscValidType(B,1);
22636ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
22644ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2265b5df2d14SHong Zhang   PetscFunctionReturn(0);
2266b5df2d14SHong Zhang }
2267b5df2d14SHong Zhang 
22684a2ae208SSatish Balay #undef __FUNCT__
226969b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2270a30f8f8cSSatish Balay /*@C
227169b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2272a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2273a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2274a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2275a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2276a30f8f8cSSatish Balay 
2277a30f8f8cSSatish Balay    Collective on MPI_Comm
2278a30f8f8cSSatish Balay 
2279a30f8f8cSSatish Balay    Input Parameters:
2280a30f8f8cSSatish Balay +  comm - MPI communicator
2281bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2282bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2283a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2284a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2285a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2286a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2287a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2288a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2289a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2290a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2291a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2292a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2293a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
22946d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
22950298fd71SBarry Smith            (possibly different for each block block row) or NULL.
229695742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
229795742e49SBarry Smith            set its value even if it is zero.
2298a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2299a30f8f8cSSatish Balay            submatrix (same for all local rows).
2300a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2301a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23020298fd71SBarry Smith            each block row) or NULL.
2303a30f8f8cSSatish Balay 
2304a30f8f8cSSatish Balay    Output Parameter:
2305a30f8f8cSSatish Balay .  A - the matrix
2306a30f8f8cSSatish Balay 
2307a30f8f8cSSatish Balay    Options Database Keys:
2308a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2309a30f8f8cSSatish Balay                      block calculations (much slower)
2310a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2311a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2312a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2313a30f8f8cSSatish Balay 
2314175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2315ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2316175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2317175b88e8SBarry Smith 
2318a30f8f8cSSatish Balay    Notes:
2319d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23206d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2321d1be2dadSMatthew Knepley 
2322a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2323a30f8f8cSSatish Balay    (possibly both).
2324a30f8f8cSSatish Balay 
2325a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2326a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2327a30f8f8cSSatish Balay 
232849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
232949a6f317SBarry Smith 
2330a30f8f8cSSatish Balay    Storage Information:
2331a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2332a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2333a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2334a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2335a30f8f8cSSatish Balay 
2336a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2337a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
23380298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2339a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2340a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2341a30f8f8cSSatish Balay 
2342a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2343a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2344a30f8f8cSSatish Balay 
2345a30f8f8cSSatish Balay .vb
2346a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2347a4b1a0f6SJed Brown           --------------------------
2348c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2349c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2350c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2351a4b1a0f6SJed Brown           --------------------------
2352a30f8f8cSSatish Balay .ve
2353a30f8f8cSSatish Balay 
2354a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2355a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23566d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23576d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2358a30f8f8cSSatish Balay 
23596d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23606d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2361a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2362a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2363a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2364a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2365a30f8f8cSSatish Balay    matrices.
2366a30f8f8cSSatish Balay 
2367a30f8f8cSSatish Balay    Level: intermediate
2368a30f8f8cSSatish Balay 
2369a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2370a30f8f8cSSatish Balay 
237169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2372a30f8f8cSSatish Balay @*/
2373a30f8f8cSSatish Balay 
237469b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2375a30f8f8cSSatish Balay {
23766849ba73SBarry Smith   PetscErrorCode ierr;
23771302d50aSBarry Smith   PetscMPIInt    size;
2378a30f8f8cSSatish Balay 
2379a30f8f8cSSatish Balay   PetscFunctionBegin;
2380f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2381f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2382273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2383273d9f13SBarry Smith   if (size > 1) {
2384b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2385b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2386273d9f13SBarry Smith   } else {
2387273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2388273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2389273d9f13SBarry Smith   }
2390a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2391a30f8f8cSSatish Balay }
2392a30f8f8cSSatish Balay 
2393a30f8f8cSSatish Balay 
23944a2ae208SSatish Balay #undef __FUNCT__
23954a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
23966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2397a30f8f8cSSatish Balay {
2398a30f8f8cSSatish Balay   Mat            mat;
2399a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2400dfbe8321SBarry Smith   PetscErrorCode ierr;
2401d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2402387bc808SHong Zhang   PetscScalar    *array;
2403a30f8f8cSSatish Balay 
2404a30f8f8cSSatish Balay   PetscFunctionBegin;
2405a30f8f8cSSatish Balay   *newmat = 0;
240626fbe8dcSKarl Rupp 
2407ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2408d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
24097adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24101d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
24111e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
24121e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2413e1b6402fSHong Zhang 
2414d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2415273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
241682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24177fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24187fff6886SHong Zhang 
2419b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2420a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2421a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2422a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2423a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2424a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2425a30f8f8cSSatish Balay 
2426899cda47SBarry Smith 
2427a30f8f8cSSatish Balay   a->size         = oldmat->size;
2428a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2429a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2430a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2431a30f8f8cSSatish Balay   a->rowindices   = 0;
2432a30f8f8cSSatish Balay   a->rowvalues    = 0;
2433a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2434a30f8f8cSSatish Balay   a->barray       = 0;
2435899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2436899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2437899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2438899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2439a30f8f8cSSatish Balay 
2440a30f8f8cSSatish Balay   /* hash table stuff */
2441a30f8f8cSSatish Balay   a->ht           = 0;
2442a30f8f8cSSatish Balay   a->hd           = 0;
2443a30f8f8cSSatish Balay   a->ht_size      = 0;
2444a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2445a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2446a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2447a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2448a30f8f8cSSatish Balay 
2449899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2450a30f8f8cSSatish Balay   if (oldmat->colmap) {
2451a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2452a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2453a30f8f8cSSatish Balay #else
2454854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
24553bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
24561302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2457a30f8f8cSSatish Balay #endif
2458a30f8f8cSSatish Balay   } else a->colmap = 0;
2459387bc808SHong Zhang 
2460a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2461785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
24623bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
24631302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2464a30f8f8cSSatish Balay   } else a->garray = 0;
2465a30f8f8cSSatish Balay 
2466ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2467a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
24683bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2469a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
24703bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
247182327fa8SHong Zhang 
247282327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
24733bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
247482327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
24753bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2476387bc808SHong Zhang 
2477387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
24781ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2479778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2480778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
24811ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
24821ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2483778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
24841ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
24853bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
24863bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
24873bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
24883bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
24893bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2490387bc808SHong Zhang 
2491387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2492387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2493387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
24943bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
249582327fa8SHong Zhang 
2496a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
24973bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2498a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
24993bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2500140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2501a30f8f8cSSatish Balay   *newmat = mat;
2502a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2503a30f8f8cSSatish Balay }
2504a30f8f8cSSatish Balay 
25054a2ae208SSatish Balay #undef __FUNCT__
25065bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2507112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
250895936485SShri Abhyankar {
250995936485SShri Abhyankar   PetscErrorCode ierr;
251095936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
251195936485SShri Abhyankar   PetscScalar    *vals,*buf;
2512ce94432eSBarry Smith   MPI_Comm       comm;
251395936485SShri Abhyankar   MPI_Status     status;
2514adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2515adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
251695936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
25173059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
251895936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2519461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
252095936485SShri Abhyankar   int            fd;
252195936485SShri Abhyankar 
252295936485SShri Abhyankar   PetscFunctionBegin;
2523c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2524c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2525ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
25260298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
25270298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
252895936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
25293059b6faSBarry Smith   if (bs < 0) bs = 1;
253095936485SShri Abhyankar 
253195936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
253295936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
253395936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
25345872f025SBarry Smith   if (!rank) {
253595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
253695936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
253702f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
253895936485SShri Abhyankar   }
253995936485SShri Abhyankar 
254095936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
254126fbe8dcSKarl Rupp   M    = header[1];
254226fbe8dcSKarl Rupp   N    = header[2];
254395936485SShri Abhyankar 
254495936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2545461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2546461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
254795936485SShri Abhyankar 
254895936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
254995936485SShri Abhyankar 
255095936485SShri Abhyankar   /*
255195936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
255295936485SShri Abhyankar      divisible by the blocksize
255395936485SShri Abhyankar   */
255495936485SShri Abhyankar   Mbs        = M/bs;
255595936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
255695936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
255795936485SShri Abhyankar   else                  Mbs++;
255895936485SShri Abhyankar   if (extra_rows &&!rank) {
255995936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
256095936485SShri Abhyankar   }
256195936485SShri Abhyankar 
256295936485SShri Abhyankar   /* determine ownership of all rows */
256395936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
256495936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
256595936485SShri Abhyankar     m   = mbs*bs;
256695936485SShri Abhyankar   } else { /* User Set */
256795936485SShri Abhyankar     m   = newmat->rmap->n;
256895936485SShri Abhyankar     mbs = m/bs;
256995936485SShri Abhyankar   }
2570dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
25714dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
257295936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
257395936485SShri Abhyankar   rowners[0] = 0;
257495936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
257595936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
257695936485SShri Abhyankar   rstart = rowners[rank];
257795936485SShri Abhyankar   rend   = rowners[rank+1];
257895936485SShri Abhyankar 
257995936485SShri Abhyankar   /* distribute row lengths to all processors */
2580785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
258195936485SShri Abhyankar   if (!rank) {
2582854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
258395936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
258495936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2585785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
258695936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
258795936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
258895936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
258995936485SShri Abhyankar   } else {
259095936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
259195936485SShri Abhyankar   }
259295936485SShri Abhyankar 
259395936485SShri Abhyankar   if (!rank) {   /* procs[0] */
259495936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2595785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
259695936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
259795936485SShri Abhyankar     for (i=0; i<size; i++) {
259895936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
259995936485SShri Abhyankar         procsnz[i] += rowlengths[j];
260095936485SShri Abhyankar       }
260195936485SShri Abhyankar     }
260295936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
260395936485SShri Abhyankar 
260495936485SShri Abhyankar     /* determine max buffer needed and allocate it */
260595936485SShri Abhyankar     maxnz = 0;
260695936485SShri Abhyankar     for (i=0; i<size; i++) {
260795936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
260895936485SShri Abhyankar     }
2609785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
261095936485SShri Abhyankar 
261195936485SShri Abhyankar     /* read in my part of the matrix column indices  */
261295936485SShri Abhyankar     nz     = procsnz[0];
2613785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
261495936485SShri Abhyankar     mycols = ibuf;
261595936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
261695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
261726fbe8dcSKarl Rupp     if (size == 1) {
261826fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
261926fbe8dcSKarl Rupp     }
262095936485SShri Abhyankar 
262195936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
262295936485SShri Abhyankar     for (i=1; i<size-1; i++) {
262395936485SShri Abhyankar       nz   = procsnz[i];
262495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
262595936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
262695936485SShri Abhyankar     }
262795936485SShri Abhyankar     /* read in the stuff for the last proc */
262895936485SShri Abhyankar     if (size != 1) {
262995936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
263095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
263195936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
263295936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
263395936485SShri Abhyankar     }
263495936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
263595936485SShri Abhyankar   } else {  /* procs[i], i>0 */
263695936485SShri Abhyankar     /* determine buffer space needed for message */
263795936485SShri Abhyankar     nz = 0;
263826fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2639785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
264095936485SShri Abhyankar     mycols = ibuf;
264195936485SShri Abhyankar     /* receive message of column indices*/
264295936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
264395936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
264495936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
264595936485SShri Abhyankar   }
264695936485SShri Abhyankar 
264795936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2648dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2649dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
265095936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
265195936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
265295936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
265395936485SShri Abhyankar   rowcount = 0;
265495936485SShri Abhyankar   nzcount  = 0;
265595936485SShri Abhyankar   for (i=0; i<mbs; i++) {
265695936485SShri Abhyankar     dcount  = 0;
265795936485SShri Abhyankar     odcount = 0;
265895936485SShri Abhyankar     for (j=0; j<bs; j++) {
265995936485SShri Abhyankar       kmax = locrowlens[rowcount];
266095936485SShri Abhyankar       for (k=0; k<kmax; k++) {
266195936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
266295936485SShri Abhyankar         if (!mask[tmp]) {
266395936485SShri Abhyankar           mask[tmp] = 1;
266495936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
266595936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
266695936485SShri Abhyankar         }
266795936485SShri Abhyankar       }
266895936485SShri Abhyankar       rowcount++;
266995936485SShri Abhyankar     }
267095936485SShri Abhyankar 
267195936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
267295936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
267395936485SShri Abhyankar 
267495936485SShri Abhyankar     /* zero out the mask elements we set */
267595936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
267695936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
267795936485SShri Abhyankar   }
267895936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
267995936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
26806816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
268195936485SShri Abhyankar 
268295936485SShri Abhyankar   if (!rank) {
2683785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
268495936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
268595936485SShri Abhyankar     nz     = procsnz[0];
268695936485SShri Abhyankar     vals   = buf;
268795936485SShri Abhyankar     mycols = ibuf;
268895936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
268995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
269026fbe8dcSKarl Rupp     if (size == 1) {
269126fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
269226fbe8dcSKarl Rupp     }
269395936485SShri Abhyankar 
269495936485SShri Abhyankar     /* insert into matrix */
269595936485SShri Abhyankar     jj = rstart*bs;
269695936485SShri Abhyankar     for (i=0; i<m; i++) {
269795936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
269895936485SShri Abhyankar       mycols += locrowlens[i];
269995936485SShri Abhyankar       vals   += locrowlens[i];
270095936485SShri Abhyankar       jj++;
270195936485SShri Abhyankar     }
270295936485SShri Abhyankar 
270395936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
270495936485SShri Abhyankar     for (i=1; i<size-1; i++) {
270595936485SShri Abhyankar       nz   = procsnz[i];
270695936485SShri Abhyankar       vals = buf;
270795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
270895936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
270995936485SShri Abhyankar     }
271095936485SShri Abhyankar     /* the last proc */
271195936485SShri Abhyankar     if (size != 1) {
271295936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
271395936485SShri Abhyankar       vals = buf;
271495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
271595936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
271695936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
271795936485SShri Abhyankar     }
271895936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
271995936485SShri Abhyankar 
272095936485SShri Abhyankar   } else {
272195936485SShri Abhyankar     /* receive numeric values */
2722785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
272395936485SShri Abhyankar 
272495936485SShri Abhyankar     /* receive message of values*/
272595936485SShri Abhyankar     vals   = buf;
272695936485SShri Abhyankar     mycols = ibuf;
272795936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
272895936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
272995936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
273095936485SShri Abhyankar 
273195936485SShri Abhyankar     /* insert into matrix */
273295936485SShri Abhyankar     jj = rstart*bs;
273395936485SShri Abhyankar     for (i=0; i<m; i++) {
273495936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
273595936485SShri Abhyankar       mycols += locrowlens[i];
273695936485SShri Abhyankar       vals   += locrowlens[i];
273795936485SShri Abhyankar       jj++;
273895936485SShri Abhyankar     }
273995936485SShri Abhyankar   }
274095936485SShri Abhyankar 
274195936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
274295936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
274395936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
274495936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
274595936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
274695936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
274795936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
274895936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
274995936485SShri Abhyankar   PetscFunctionReturn(0);
275095936485SShri Abhyankar }
275195936485SShri Abhyankar 
275295936485SShri Abhyankar #undef __FUNCT__
27534a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2754dcf5cc72SBarry Smith /*XXXXX@
2755a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2756a30f8f8cSSatish Balay 
2757a30f8f8cSSatish Balay    Input Parameters:
2758a30f8f8cSSatish Balay .  mat  - the matrix
2759a30f8f8cSSatish Balay .  fact - factor
2760a30f8f8cSSatish Balay 
2761c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2762a30f8f8cSSatish Balay 
2763a30f8f8cSSatish Balay    Level: advanced
2764a30f8f8cSSatish Balay 
2765a30f8f8cSSatish Balay   Notes:
2766a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2767a30f8f8cSSatish Balay 
2768a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2769a30f8f8cSSatish Balay 
2770a30f8f8cSSatish Balay .seealso: MatSetOption()
2771dcf5cc72SBarry Smith @XXXXX*/
2772dcf5cc72SBarry Smith 
277324d5174aSHong Zhang 
27744a2ae208SSatish Balay #undef __FUNCT__
2775985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2776985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
277724d5174aSHong Zhang {
277824d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2779f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2780ca54ac64SHong Zhang   PetscReal      atmp;
278187828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2782dfbe8321SBarry Smith   PetscErrorCode ierr;
27831302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
27841302d50aSBarry Smith   PetscMPIInt    rank,size;
27851302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
278687828ca2SBarry Smith   PetscScalar    *va;
27878a1c53f2SBarry Smith   MatScalar      *ba;
2788f4c0e9e4SHong Zhang   MPI_Status     stat;
278924d5174aSHong Zhang 
279024d5174aSHong Zhang   PetscFunctionBegin;
2791e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
27920298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
27931ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2794f4c0e9e4SHong Zhang 
2795ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2796ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2797f4c0e9e4SHong Zhang 
2798d0f46423SBarry Smith   bs  = A->rmap->bs;
2799f4c0e9e4SHong Zhang   mbs = a->mbs;
2800f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2801f4c0e9e4SHong Zhang   ba  = b->a;
2802f4c0e9e4SHong Zhang   bi  = b->i;
2803f4c0e9e4SHong Zhang   bj  = b->j;
2804f4c0e9e4SHong Zhang 
2805f4c0e9e4SHong Zhang   /* find ownerships */
2806d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2807f4c0e9e4SHong Zhang 
2808f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2809785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2810ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2811f4c0e9e4SHong Zhang 
2812f4c0e9e4SHong Zhang   /* row_max for B */
2813b8475685SHong Zhang   if (rank != size-1) {
2814f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2815f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2816f4c0e9e4SHong Zhang       brow  = bs*i;
2817f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2818f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2819f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2820ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
282104d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2822f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2823f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2824ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2825ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2826f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2827f4c0e9e4SHong Zhang           }
2828f4c0e9e4SHong Zhang         }
2829f4c0e9e4SHong Zhang         bj++;
2830f4c0e9e4SHong Zhang       }
2831f4c0e9e4SHong Zhang     }
2832f4c0e9e4SHong Zhang 
2833f4c0e9e4SHong Zhang     /* send values to its owners */
2834f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2835f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2836ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2837ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2838ca54ac64SHong Zhang     }
2839f4c0e9e4SHong Zhang   }
2840f4c0e9e4SHong Zhang 
2841f4c0e9e4SHong Zhang   /* receive values */
2842ca54ac64SHong Zhang   if (rank) {
2843f4c0e9e4SHong Zhang     rvalues = work;
2844ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2845f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2846ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2847f4c0e9e4SHong Zhang       /* process values */
2848f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2849ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2850f4c0e9e4SHong Zhang       }
2851f4c0e9e4SHong Zhang     }
2852ca54ac64SHong Zhang   }
2853f4c0e9e4SHong Zhang 
28541ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2855ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
285624d5174aSHong Zhang   PetscFunctionReturn(0);
285724d5174aSHong Zhang }
28582798e883SHong Zhang 
28592798e883SHong Zhang #undef __FUNCT__
286041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
286141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
28622798e883SHong Zhang {
28632798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2864dfbe8321SBarry Smith   PetscErrorCode    ierr;
2865d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
28663649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2867ffe4fb16SHong Zhang   Vec               bb1;
28683649974fSBarry Smith   const PetscScalar *b;
2869ffe4fb16SHong Zhang 
2870ffe4fb16SHong Zhang   PetscFunctionBegin;
2871e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2872e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2873ffe4fb16SHong Zhang 
2874a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
287541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2876a2b30743SBarry Smith     PetscFunctionReturn(0);
2877a2b30743SBarry Smith   }
2878a2b30743SBarry Smith 
2879ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2880ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
288141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2882ffe4fb16SHong Zhang       its--;
2883ffe4fb16SHong Zhang     }
2884ffe4fb16SHong Zhang 
2885ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2886ffe4fb16SHong Zhang     while (its--) {
2887ffe4fb16SHong Zhang 
2888ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2889ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2890ffe4fb16SHong Zhang 
2891ffe4fb16SHong Zhang       /* copy xx into slvec0a */
28921ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
28931ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2894ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
28951ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2896ffe4fb16SHong Zhang 
2897efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2898ffe4fb16SHong Zhang 
2899ffe4fb16SHong Zhang       /* copy bb into slvec1a */
29001ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
29013649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2902ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
29031ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2904ffe4fb16SHong Zhang 
2905ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2906fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2907ffe4fb16SHong Zhang 
2908ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29091ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2910a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2911ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2912ffe4fb16SHong Zhang 
2913ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2914ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2915ffe4fb16SHong Zhang 
2916ffe4fb16SHong Zhang       /* local diagonal sweep */
291741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2918ffe4fb16SHong Zhang     }
29196bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2920fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
292141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2922fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
292341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2924fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2925fa22f6d0SBarry Smith     Vec               xx1;
2926ace3abfcSBarry Smith     PetscBool         hasop;
292720f1ed55SBarry Smith     const PetscScalar *diag;
2928887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
292920f1ed55SBarry Smith     PetscInt          i,n;
2930fa22f6d0SBarry Smith 
2931fa22f6d0SBarry Smith     if (!mat->xx1) {
2932fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2933fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2934fa22f6d0SBarry Smith     }
2935fa22f6d0SBarry Smith     xx1 = mat->xx1;
2936fa22f6d0SBarry Smith     bb1 = mat->bb1;
2937fa22f6d0SBarry Smith 
293841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2939fa22f6d0SBarry Smith 
2940fa22f6d0SBarry Smith     if (!mat->diag) {
2941effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
29422a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2943fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2944fa22f6d0SBarry Smith     }
2945fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2946fa22f6d0SBarry Smith 
2947fa22f6d0SBarry Smith     if (hasop) {
2948fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2949887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
295020f1ed55SBarry Smith     } else {
295120f1ed55SBarry Smith       /*
295220f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
295320f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2954887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
295520f1ed55SBarry Smith       */
295620f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29573649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29583649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
295920f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
296020f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2961887ee2caSBarry Smith       if (omega == 1.0) {
296226fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
296320f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2964887ee2caSBarry Smith       } else {
296526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2966887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2967887ee2caSBarry Smith       }
296820f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29693649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29703649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
297120f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
297220f1ed55SBarry Smith     }
2973fa22f6d0SBarry Smith 
2974fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2975fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2976fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2977fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2978fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2979fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2980fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2981fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2982fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2983fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2984effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2985fa22f6d0SBarry Smith 
2986fa22f6d0SBarry Smith     /* local sweep */
298741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2988fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2989f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2990ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2991ffe4fb16SHong Zhang }
2992ffe4fb16SHong Zhang 
2993ffe4fb16SHong Zhang #undef __FUNCT__
299441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
299541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2996ffe4fb16SHong Zhang {
2997ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2998dfbe8321SBarry Smith   PetscErrorCode ierr;
29992798e883SHong Zhang   Vec            lvec1,bb1;
30002798e883SHong Zhang 
30012798e883SHong Zhang   PetscFunctionBegin;
3002e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3003e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
30042798e883SHong Zhang 
3005c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
30062798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
300741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
30082798e883SHong Zhang       its--;
30092798e883SHong Zhang     }
30102798e883SHong Zhang 
30112798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
30122798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
30132798e883SHong Zhang     while (its--) {
3014ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30152798e883SHong Zhang 
30162798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
30172798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3018efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
30192798e883SHong Zhang 
3020ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30212798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3022ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30232798e883SHong Zhang 
30242798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3025efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
30262798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
30272798e883SHong Zhang 
3028ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30292798e883SHong Zhang 
3030c14dc6b6SHong Zhang       /* diagonal sweep */
303141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
30322798e883SHong Zhang     }
30336bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
30346bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
30356bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
30362798e883SHong Zhang   PetscFunctionReturn(0);
30372798e883SHong Zhang }
30382798e883SHong Zhang 
3039dfb205c3SBarry Smith #undef __FUNCT__
3040dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
3041dfb205c3SBarry Smith /*@
3042dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3043dfb205c3SBarry Smith          CSR format the local rows.
3044dfb205c3SBarry Smith 
3045dfb205c3SBarry Smith    Collective on MPI_Comm
3046dfb205c3SBarry Smith 
3047dfb205c3SBarry Smith    Input Parameters:
3048dfb205c3SBarry Smith +  comm - MPI communicator
3049dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3050dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3051dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3052dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3053dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3054dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3055dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3056dfb205c3SBarry Smith .   i - row indices
3057dfb205c3SBarry Smith .   j - column indices
3058dfb205c3SBarry Smith -   a - matrix values
3059dfb205c3SBarry Smith 
3060dfb205c3SBarry Smith    Output Parameter:
3061dfb205c3SBarry Smith .   mat - the matrix
3062dfb205c3SBarry Smith 
3063dfb205c3SBarry Smith    Level: intermediate
3064dfb205c3SBarry Smith 
3065dfb205c3SBarry Smith    Notes:
3066dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3067dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3068dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3069dfb205c3SBarry Smith 
3070dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3071dfb205c3SBarry Smith 
3072dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3073dfb205c3SBarry Smith 
3074dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
307569b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3076dfb205c3SBarry Smith @*/
30777087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3078dfb205c3SBarry Smith {
3079dfb205c3SBarry Smith   PetscErrorCode ierr;
3080dfb205c3SBarry Smith 
3081dfb205c3SBarry Smith 
3082dfb205c3SBarry Smith   PetscFunctionBegin;
3083f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3084dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3085dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3086dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3087dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3088dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3089dfb205c3SBarry Smith   PetscFunctionReturn(0);
3090dfb205c3SBarry Smith }
3091dfb205c3SBarry Smith 
3092dfb205c3SBarry Smith 
3093dfb205c3SBarry Smith #undef __FUNCT__
3094dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
3095dfb205c3SBarry Smith /*@C
3096dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3097dfb205c3SBarry Smith    (the default parallel PETSc format).
3098dfb205c3SBarry Smith 
3099dfb205c3SBarry Smith    Collective on MPI_Comm
3100dfb205c3SBarry Smith 
3101dfb205c3SBarry Smith    Input Parameters:
31021c4f3114SJed Brown +  B - the matrix
3103dfb205c3SBarry Smith .  bs - the block size
3104dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3105dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3106dfb205c3SBarry Smith -  v - optional values in the matrix
3107dfb205c3SBarry Smith 
3108dfb205c3SBarry Smith    Level: developer
3109dfb205c3SBarry Smith 
3110dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3111dfb205c3SBarry Smith 
311269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3113dfb205c3SBarry Smith @*/
31147087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3115dfb205c3SBarry Smith {
31164ac538c5SBarry Smith   PetscErrorCode ierr;
3117dfb205c3SBarry Smith 
3118dfb205c3SBarry Smith   PetscFunctionBegin;
31194ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3120dfb205c3SBarry Smith   PetscFunctionReturn(0);
3121dfb205c3SBarry Smith }
3122dfb205c3SBarry Smith 
3123de4b53ebSHong Zhang #undef __FUNCT__
312410c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
312510c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
31264dcd73b1SHong Zhang {
31274dcd73b1SHong Zhang   PetscErrorCode ierr;
312810c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
312910c56fdeSHong Zhang   PetscInt       *indx;
313010c56fdeSHong Zhang   PetscScalar    *values;
3131dfb205c3SBarry Smith 
31324dcd73b1SHong Zhang   PetscFunctionBegin;
31334dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
313410c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
313510c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
313610c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
313710c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
31384dcd73b1SHong Zhang 
313910c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
314010c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
314110c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
314210c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
314310c56fdeSHong Zhang     }
314410c56fdeSHong Zhang     /* Check sum(n) = Nbs */
3145b2566f29SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
314610c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
314710c56fdeSHong Zhang 
314810c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
314910c56fdeSHong Zhang     rstart -= mbs;
31504dcd73b1SHong Zhang 
31514dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
315210c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3153e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
315410c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
31554dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
31564dcd73b1SHong Zhang       nnz = nnz/bs;
31574dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
31584dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
31594dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
31604dcd73b1SHong Zhang     }
3161e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
31624dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
31634dcd73b1SHong Zhang 
31644dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
316510c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
31664dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
31674dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
31684dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
31694dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
31704dcd73b1SHong Zhang   }
31714dcd73b1SHong Zhang 
317210c56fdeSHong Zhang   /* numeric phase */
31734dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
317410c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
31754dcd73b1SHong Zhang 
3176e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
31774dcd73b1SHong Zhang   for (i=0; i<m; i++) {
31784dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31794dcd73b1SHong Zhang     Ii   = i + rstart;
318010c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
31814dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31824dcd73b1SHong Zhang   }
3183e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
318410c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
318510c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31864dcd73b1SHong Zhang   PetscFunctionReturn(0);
31874dcd73b1SHong Zhang }
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