1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined" 24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 24136bd2089SBarry Smith { 24236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 24336bd2089SBarry Smith PetscErrorCode ierr; 24436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 24536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 24636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 24736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24836bd2089SBarry Smith const PetscScalar *value = v; 24936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 25036bd2089SBarry Smith 25136bd2089SBarry Smith PetscFunctionBegin; 25236bd2089SBarry Smith if (col < row) { 25336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 25436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 25536bd2089SBarry Smith } 25636bd2089SBarry Smith rp = aj + ai[row]; 25736bd2089SBarry Smith ap = aa + bs2*ai[row]; 25836bd2089SBarry Smith rmax = imax[row]; 25936bd2089SBarry Smith nrow = ailen[row]; 26036bd2089SBarry Smith value = v; 26136bd2089SBarry Smith low = 0; 26236bd2089SBarry Smith high = nrow; 26336bd2089SBarry Smith 26436bd2089SBarry Smith while (high-low > 7) { 26536bd2089SBarry Smith t = (low+high)/2; 26636bd2089SBarry Smith if (rp[t] > col) high = t; 26736bd2089SBarry Smith else low = t; 26836bd2089SBarry Smith } 26936bd2089SBarry Smith for (i=low; i<high; i++) { 27036bd2089SBarry Smith if (rp[i] > col) break; 27136bd2089SBarry Smith if (rp[i] == col) { 27236bd2089SBarry Smith bap = ap + bs2*i; 27336bd2089SBarry Smith if (roworiented) { 27436bd2089SBarry Smith if (is == ADD_VALUES) { 27536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27736bd2089SBarry Smith bap[jj] += *value++; 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } 28036bd2089SBarry Smith } else { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 28336bd2089SBarry Smith bap[jj] = *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } 28736bd2089SBarry Smith } else { 28836bd2089SBarry Smith if (is == ADD_VALUES) { 28936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29136bd2089SBarry Smith *bap++ += *value++; 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith } else { 29536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29736bd2089SBarry Smith *bap++ = *value++; 29836bd2089SBarry Smith } 29936bd2089SBarry Smith } 30036bd2089SBarry Smith } 30136bd2089SBarry Smith } 30236bd2089SBarry Smith goto noinsert2; 30336bd2089SBarry Smith } 30436bd2089SBarry Smith } 30536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 30636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 30736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30836bd2089SBarry Smith N = nrow++ - 1; high++; 30936bd2089SBarry Smith /* shift up all the later entries in this row */ 31036bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 31136bd2089SBarry Smith rp[ii+1] = rp[ii]; 31236bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 31336bd2089SBarry Smith } 31436bd2089SBarry Smith if (N >= i) { 31536bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 31636bd2089SBarry Smith } 31736bd2089SBarry Smith rp[i] = col; 31836bd2089SBarry Smith bap = ap + bs2*i; 31936bd2089SBarry Smith if (roworiented) { 32036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 32236bd2089SBarry Smith bap[jj] = *value++; 32336bd2089SBarry Smith } 32436bd2089SBarry Smith } 32536bd2089SBarry Smith } else { 32636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32836bd2089SBarry Smith *bap++ = *value++; 32936bd2089SBarry Smith } 33036bd2089SBarry Smith } 33136bd2089SBarry Smith } 33236bd2089SBarry Smith noinsert2:; 33336bd2089SBarry Smith ailen[row] = nrow; 33436bd2089SBarry Smith PetscFunctionReturn(0); 33536bd2089SBarry Smith } 33636bd2089SBarry Smith 33736bd2089SBarry Smith #undef __FUNCT__ 33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 33936bd2089SBarry Smith /* 34036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 34136bd2089SBarry Smith */ 34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34336bd2089SBarry Smith { 34436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscErrorCode ierr; 34836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 35036bd2089SBarry Smith const PetscScalar *value = v; 35136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35236bd2089SBarry Smith 35336bd2089SBarry Smith PetscFunctionBegin; 35436bd2089SBarry Smith rp = aj + ai[row]; 35536bd2089SBarry Smith ap = aa + bs2*ai[row]; 35636bd2089SBarry Smith rmax = imax[row]; 35736bd2089SBarry Smith nrow = ailen[row]; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith bap[jj] += value[jj]; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith bap += bs; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } else { 39336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 39436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39536bd2089SBarry Smith bap[jj] = value[jj]; 39636bd2089SBarry Smith } 39736bd2089SBarry Smith bap += bs; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith goto noinsert2; 40236bd2089SBarry Smith } 40336bd2089SBarry Smith } 40436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 40636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40736bd2089SBarry Smith N = nrow++ - 1; high++; 40836bd2089SBarry Smith /* shift up all the later entries in this row */ 40936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 41036bd2089SBarry Smith rp[ii+1] = rp[ii]; 41136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith if (N >= i) { 41436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp[i] = col; 41736bd2089SBarry Smith bap = ap + bs2*i; 41836bd2089SBarry Smith if (roworiented) { 41936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 42136bd2089SBarry Smith bap[jj] = *value++; 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith } else { 42536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42736bd2089SBarry Smith *bap++ = *value++; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith } 43036bd2089SBarry Smith } 43136bd2089SBarry Smith noinsert2:; 43236bd2089SBarry Smith ailen[row] = nrow; 43336bd2089SBarry Smith PetscFunctionReturn(0); 43436bd2089SBarry Smith } 43536bd2089SBarry Smith 43636bd2089SBarry Smith #undef __FUNCT__ 437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 43836bd2089SBarry Smith /* 43936bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 44036bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 44136bd2089SBarry Smith */ 442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 443a30f8f8cSSatish Balay { 4440880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 445f15d580aSBarry Smith const MatScalar *value; 446f15d580aSBarry Smith MatScalar *barray =baij->barray; 447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 450899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 451d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4520880e062SHong Zhang 453a30f8f8cSSatish Balay PetscFunctionBegin; 4540880e062SHong Zhang if (!barray) { 455785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4560880e062SHong Zhang baij->barray = barray; 4570880e062SHong Zhang } 4580880e062SHong Zhang 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang stepval = (n-1)*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang stepval = (m-1)*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (i=0; i<m; i++) { 4650880e062SHong Zhang if (im[i] < 0) continue; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4680880e062SHong Zhang #endif 4690880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4700880e062SHong Zhang row = im[i] - rstart; 4710880e062SHong Zhang for (j=0; j<n; j++) { 472f3f98c53SJed Brown if (im[i] > in[j]) { 473f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 474e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 475f3f98c53SJed Brown } 4760880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4770880e062SHong Zhang if ((roworiented) && (n == 1)) { 478f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4790880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 480f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4810880e062SHong Zhang } else { /* Here a copy is required */ 4820880e062SHong Zhang if (roworiented) { 4830880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4840880e062SHong Zhang } else { 4850880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4860880e062SHong Zhang } 4870880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4880880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4890880e062SHong Zhang *barray++ = *value++; 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang barray -=bs2; 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4960880e062SHong Zhang col = in[j] - cstart; 49736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 49826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 500bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang else { 5030880e062SHong Zhang if (mat->was_assembled) { 5040880e062SHong Zhang if (!baij->colmap) { 505ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5060880e062SHong Zhang } 5070880e062SHong Zhang 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5101302d50aSBarry Smith { PetscInt data; 5110880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 512e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5130880e062SHong Zhang } 5140880e062SHong Zhang #else 515e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5160880e062SHong Zhang #endif 5170880e062SHong Zhang #endif 5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5190880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5200880e062SHong Zhang col = (col - 1)/bs; 5210880e062SHong Zhang #else 5220880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5230880e062SHong Zhang #endif 5240880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 525ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5260880e062SHong Zhang col = in[j]; 5270880e062SHong Zhang } 52826fbe8dcSKarl Rupp } else col = in[j]; 52936bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5300880e062SHong Zhang } 5310880e062SHong Zhang } 5320880e062SHong Zhang } else { 533bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5340880e062SHong Zhang if (!baij->donotstash) { 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5370880e062SHong Zhang } else { 5380880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5390880e062SHong Zhang } 5400880e062SHong Zhang } 5410880e062SHong Zhang } 5420880e062SHong Zhang } 5430880e062SHong Zhang PetscFunctionReturn(0); 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 553d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 558e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 563e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data--; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 594dfbe8321SBarry Smith PetscErrorCode ierr; 595a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay if (baij->size == 1) { 599a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 600a30f8f8cSSatish Balay } else { 601a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 602785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 605a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 607b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6088f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 609a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6100b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6110b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6120b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6130b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 614899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 615d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6160b8dc8d2SHong Zhang MatScalar *v; 6170b8dc8d2SHong Zhang 618dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 619d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6200b8dc8d2SHong Zhang /* Amat */ 6210b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6220b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6230b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6240b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6250b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6260b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6270b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6280b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6290b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6300b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6310b8dc8d2SHong Zhang /* non-diagonal block */ 6320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6330b8dc8d2SHong Zhang } 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 63651f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 6370b8dc8d2SHong Zhang } 6380b8dc8d2SHong Zhang /* Bmat */ 6390b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6420b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6440b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6450b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6460b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6490b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6500b8dc8d2SHong Zhang } 6510b8dc8d2SHong Zhang } 6520b8dc8d2SHong Zhang } 65351f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 6540b8dc8d2SHong Zhang } 655b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6560b8dc8d2SHong Zhang *norm = 0.0; 657d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6580b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6590b8dc8d2SHong Zhang } 66074ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 661f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 6664a2ae208SSatish Balay #undef __FUNCT__ 6674a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 668dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 669a30f8f8cSSatish Balay { 670a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 671dfbe8321SBarry Smith PetscErrorCode ierr; 6721302d50aSBarry Smith PetscInt nstash,reallocs; 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay PetscFunctionBegin; 67526fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 676a30f8f8cSSatish Balay 677d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6781e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 679a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6801e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 681a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6821e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 683a30f8f8cSSatish Balay PetscFunctionReturn(0); 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay 6864a2ae208SSatish Balay #undef __FUNCT__ 6874a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 688dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 689a30f8f8cSSatish Balay { 690a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 691a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6926849ba73SBarry Smith PetscErrorCode ierr; 69313f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 694e44c0bd4SBarry Smith PetscInt *row,*col; 695ace3abfcSBarry Smith PetscBool other_disassembled; 69613f74950SBarry Smith PetscMPIInt n; 697ace3abfcSBarry Smith PetscBool r1,r2,r3; 698a30f8f8cSSatish Balay MatScalar *val; 699a30f8f8cSSatish Balay 70091c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 701a30f8f8cSSatish Balay PetscFunctionBegin; 7024cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 703a30f8f8cSSatish Balay while (1) { 704a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 705a30f8f8cSSatish Balay if (!flg) break; 706a30f8f8cSSatish Balay 707a30f8f8cSSatish Balay for (i=0; i<n;) { 708a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 70926fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 71026fbe8dcSKarl Rupp if (row[j] != rstart) break; 71126fbe8dcSKarl Rupp } 712a30f8f8cSSatish Balay if (j < n) ncols = j-i; 713a30f8f8cSSatish Balay else ncols = n-i; 714a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7154b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 716a30f8f8cSSatish Balay i = j; 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 720a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 721a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 722a30f8f8cSSatish Balay restore the original flags */ 723a30f8f8cSSatish Balay r1 = baij->roworiented; 724a30f8f8cSSatish Balay r2 = a->roworiented; 72591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 72626fbe8dcSKarl Rupp 727a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 728a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 72926fbe8dcSKarl Rupp 73091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 731a30f8f8cSSatish Balay while (1) { 732a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 733a30f8f8cSSatish Balay if (!flg) break; 734a30f8f8cSSatish Balay 735a30f8f8cSSatish Balay for (i=0; i<n;) { 736a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 73726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 73826fbe8dcSKarl Rupp if (row[j] != rstart) break; 73926fbe8dcSKarl Rupp } 740a30f8f8cSSatish Balay if (j < n) ncols = j-i; 741a30f8f8cSSatish Balay else ncols = n-i; 7424b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 743a30f8f8cSSatish Balay i = j; 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 74726fbe8dcSKarl Rupp 748a30f8f8cSSatish Balay baij->roworiented = r1; 749a30f8f8cSSatish Balay a->roworiented = r2; 75026fbe8dcSKarl Rupp 75191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay 754a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 756a30f8f8cSSatish Balay 757a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 758a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 759a30f8f8cSSatish Balay /* 760a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 761a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 762a30f8f8cSSatish Balay */ 763a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 764b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 765a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 766ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay 770a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 77140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 775a30f8f8cSSatish Balay 77674ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77726fbe8dcSKarl Rupp 778a30f8f8cSSatish Balay baij->rowvalues = 0; 7794f9cfa9eSBarry Smith 7804f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7814f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 782e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 783b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 784e56f5c9eSBarry Smith } 785a30f8f8cSSatish Balay PetscFunctionReturn(0); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay 788383922c3SLisandro Dalcin extern PetscErrorCode MatView_SeqSBAIJ(Mat,PetscViewer); 789dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7909804daf3SBarry Smith #include <petscdraw.h> 7914a2ae208SSatish Balay #undef __FUNCT__ 7924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 794a30f8f8cSSatish Balay { 795a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 796dfbe8321SBarry Smith PetscErrorCode ierr; 797d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 7987da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 799ace3abfcSBarry Smith PetscBool iascii,isdraw; 800b0a32e0cSBarry Smith PetscViewer sviewer; 801f3ef73ceSBarry Smith PetscViewerFormat format; 802a30f8f8cSSatish Balay 803a30f8f8cSSatish Balay PetscFunctionBegin; 804251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 805251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 80632077d6dSBarry Smith if (iascii) { 807b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 808456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 809a30f8f8cSSatish Balay MatInfo info; 810ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 811a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8121575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 8137b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 815e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 816a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 817e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 818b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8191575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 82007d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 822a30f8f8cSSatish Balay PetscFunctionReturn(0); 823fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 82477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 825a30f8f8cSSatish Balay PetscFunctionReturn(0); 826c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 827c1490034SHong Zhang PetscFunctionReturn(0); 828a30f8f8cSSatish Balay } 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay if (isdraw) { 832b0a32e0cSBarry Smith PetscDraw draw; 833ace3abfcSBarry Smith PetscBool isnull; 834b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 83545f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 83645f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 837a30f8f8cSSatish Balay } 838a30f8f8cSSatish Balay 8397da1fb6eSBarry Smith { 840a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 841a30f8f8cSSatish Balay Mat A; 84265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 844d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 845a30f8f8cSSatish Balay MatScalar *a; 8463e219373SBarry Smith const char *matname; 847a30f8f8cSSatish Balay 848f204ca49SKris Buschelman /* Should this be the same type as mat? */ 849ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 850a30f8f8cSSatish Balay if (!rank) { 851f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 852a30f8f8cSSatish Balay } else { 853f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 854a30f8f8cSSatish Balay } 855f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8560298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8572b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 859a30f8f8cSSatish Balay 860a30f8f8cSSatish Balay /* copy over the A part */ 86165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 862a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 863785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 864a30f8f8cSSatish Balay 865a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 866e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 86726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 868a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 869e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 870a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 871dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 87226fbe8dcSKarl Rupp col++; 87326fbe8dcSKarl Rupp a += bs; 874a30f8f8cSSatish Balay } 875a30f8f8cSSatish Balay } 876a30f8f8cSSatish Balay } 877a30f8f8cSSatish Balay /* copy over the B part */ 87865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 87965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 880a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 881e9f7bc9eSHong Zhang 882e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 88326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 884a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 885a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 886a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 887799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 88826fbe8dcSKarl Rupp col++; 88926fbe8dcSKarl Rupp a += bs; 890a30f8f8cSSatish Balay } 891a30f8f8cSSatish Balay } 892a30f8f8cSSatish Balay } 893a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 894a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 895a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 896a30f8f8cSSatish Balay /* 897a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 898b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 899a30f8f8cSSatish Balay */ 9003f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 901ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9023e219373SBarry Smith if (!rank) { 903ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 904383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 905a30f8f8cSSatish Balay } 9063f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9071575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9086bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 909a30f8f8cSSatish Balay } 910a30f8f8cSSatish Balay PetscFunctionReturn(0); 911a30f8f8cSSatish Balay } 912a30f8f8cSSatish Balay 9134a2ae208SSatish Balay #undef __FUNCT__ 9144a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 915dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 916a30f8f8cSSatish Balay { 917dfbe8321SBarry Smith PetscErrorCode ierr; 918ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 919a30f8f8cSSatish Balay 920a30f8f8cSSatish Balay PetscFunctionBegin; 921251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 922251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 923251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 924251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 92532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 926a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 927a30f8f8cSSatish Balay } 928a30f8f8cSSatish Balay PetscFunctionReturn(0); 929a30f8f8cSSatish Balay } 930a30f8f8cSSatish Balay 9314a2ae208SSatish Balay #undef __FUNCT__ 9324a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 933dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 934a30f8f8cSSatish Balay { 935a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 936dfbe8321SBarry Smith PetscErrorCode ierr; 937a30f8f8cSSatish Balay 938a30f8f8cSSatish Balay PetscFunctionBegin; 939a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 940d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 941a30f8f8cSSatish Balay #endif 942a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 943a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 9446bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 9456bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 946a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 9476bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 948a30f8f8cSSatish Balay #else 94905b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 950a30f8f8cSSatish Balay #endif 95105b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 9526bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 9536bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 9546bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 9556bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 9566bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 9576bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 9586bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 9596bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 9605755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 96105b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 96205b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 9636bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 9646bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 9656bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 966ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 96705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 968a30f8f8cSSatish Balay #endif 96959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 97059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 971899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 972bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 973901853e0SKris Buschelman 974dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 975bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 976bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 977bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 978bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 979bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 9806214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 9816214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 9826214f412SHong Zhang #endif 983a30f8f8cSSatish Balay PetscFunctionReturn(0); 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay 9864a2ae208SSatish Balay #undef __FUNCT__ 987547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 988547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 989547795f9SHong Zhang { 990547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 991547795f9SHong Zhang PetscErrorCode ierr; 992547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 9936de40e93SBarry Smith PetscScalar *from; 9946de40e93SBarry Smith const PetscScalar *x; 995547795f9SHong Zhang 996547795f9SHong Zhang PetscFunctionBegin; 997547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 998e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 999547795f9SHong Zhang 1000547795f9SHong Zhang /* diagonal part */ 1001547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1002547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1003547795f9SHong Zhang 1004547795f9SHong Zhang /* subdiagonal part */ 1005547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1006547795f9SHong Zhang 1007547795f9SHong Zhang /* copy x into the vec slvec0 */ 1008547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10096de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1010547795f9SHong Zhang 1011547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1012547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10136de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1014547795f9SHong Zhang 1015547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1016547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1017547795f9SHong Zhang /* supperdiagonal part */ 1018547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1019547795f9SHong Zhang PetscFunctionReturn(0); 1020547795f9SHong Zhang } 1021547795f9SHong Zhang 1022547795f9SHong Zhang #undef __FUNCT__ 1023a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 1024dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1025a9d4b620SHong Zhang { 1026a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1027dfbe8321SBarry Smith PetscErrorCode ierr; 1028d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1029d9ca1df4SBarry Smith PetscScalar *from; 1030d9ca1df4SBarry Smith const PetscScalar *x; 1031a9d4b620SHong Zhang 1032a9d4b620SHong Zhang PetscFunctionBegin; 1033a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1034e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1035a9d4b620SHong Zhang 1036a9d4b620SHong Zhang /* diagonal part */ 1037a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1038fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1039a9d4b620SHong Zhang 1040a9d4b620SHong Zhang /* subdiagonal part */ 1041a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1042fc165ae2SBarry Smith 1043a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10441ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1045d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1046a9d4b620SHong Zhang 1047fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1048fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1049d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1050fc165ae2SBarry Smith 1051fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1052ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1053a9d4b620SHong Zhang /* supperdiagonal part */ 1054a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1055a9d4b620SHong Zhang PetscFunctionReturn(0); 1056a9d4b620SHong Zhang } 1057a9d4b620SHong Zhang 1058a9d4b620SHong Zhang #undef __FUNCT__ 105940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1060dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1061a30f8f8cSSatish Balay { 1062a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1063dfbe8321SBarry Smith PetscErrorCode ierr; 10641302d50aSBarry Smith PetscInt nt; 1065a30f8f8cSSatish Balay 1066a30f8f8cSSatish Balay PetscFunctionBegin; 1067a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1068e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1069e7e72b3dSBarry Smith 1070a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1071e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 107265d70643SHong Zhang 1073ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1074b941877fSHong Zhang /* do diagonal part */ 1075b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1076b941877fSHong Zhang /* do supperdiagonal part */ 1077ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1078b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1079b941877fSHong Zhang /* do subdiagonal part */ 1080b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1081ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1082ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1083a30f8f8cSSatish Balay PetscFunctionReturn(0); 1084a30f8f8cSSatish Balay } 1085a30f8f8cSSatish Balay 10864a2ae208SSatish Balay #undef __FUNCT__ 10874a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1088dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1089a30f8f8cSSatish Balay { 1090de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1091dfbe8321SBarry Smith PetscErrorCode ierr; 1092d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1093d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1094d9ca1df4SBarry Smith const PetscScalar *x; 1095a9d4b620SHong Zhang 1096a9d4b620SHong Zhang PetscFunctionBegin; 1097a9d4b620SHong Zhang /* 1098ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 10990ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1100a9d4b620SHong Zhang */ 1101a9d4b620SHong Zhang /* diagonal part */ 1102a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11032dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1104a9d4b620SHong Zhang 1105a9d4b620SHong Zhang /* subdiagonal part */ 1106a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1107a9d4b620SHong Zhang 1108a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11091ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1110d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1111a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 11121ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1113a9d4b620SHong Zhang 1114ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1115d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1116ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1117a9d4b620SHong Zhang 1118a9d4b620SHong Zhang /* supperdiagonal part */ 1119a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1120a9d4b620SHong Zhang PetscFunctionReturn(0); 1121a9d4b620SHong Zhang } 1122a9d4b620SHong Zhang 1123a9d4b620SHong Zhang #undef __FUNCT__ 1124a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1125dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1126a9d4b620SHong Zhang { 1127a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128dfbe8321SBarry Smith PetscErrorCode ierr; 1129a30f8f8cSSatish Balay 1130a30f8f8cSSatish Balay PetscFunctionBegin; 1131ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1132b941877fSHong Zhang /* do diagonal part */ 1133b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1134b941877fSHong Zhang /* do supperdiagonal part */ 1135ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1136de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1137de8b6608SHong Zhang 1138b941877fSHong Zhang /* do subdiagonal part */ 1139a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1140ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1141ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1142a30f8f8cSSatish Balay PetscFunctionReturn(0); 1143a30f8f8cSSatish Balay } 1144a30f8f8cSSatish Balay 1145a30f8f8cSSatish Balay /* 1146a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1147a30f8f8cSSatish Balay diagonal block 1148a30f8f8cSSatish Balay */ 11494a2ae208SSatish Balay #undef __FUNCT__ 11504a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1151dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1152a30f8f8cSSatish Balay { 1153a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1154dfbe8321SBarry Smith PetscErrorCode ierr; 1155a30f8f8cSSatish Balay 1156a30f8f8cSSatish Balay PetscFunctionBegin; 1157e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1158a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1159a30f8f8cSSatish Balay PetscFunctionReturn(0); 1160a30f8f8cSSatish Balay } 1161a30f8f8cSSatish Balay 11624a2ae208SSatish Balay #undef __FUNCT__ 11634a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1164f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1165a30f8f8cSSatish Balay { 1166a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1167dfbe8321SBarry Smith PetscErrorCode ierr; 1168a30f8f8cSSatish Balay 1169a30f8f8cSSatish Balay PetscFunctionBegin; 1170f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1171f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1172a30f8f8cSSatish Balay PetscFunctionReturn(0); 1173a30f8f8cSSatish Balay } 1174a30f8f8cSSatish Balay 11754a2ae208SSatish Balay #undef __FUNCT__ 11764a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11771302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1178a30f8f8cSSatish Balay { 1179d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1180d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1181d0d4cfc2SHong Zhang PetscErrorCode ierr; 1182d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1183d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1184899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1185d0d4cfc2SHong Zhang 1186a30f8f8cSSatish Balay PetscFunctionBegin; 1187e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1188d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1189d0d4cfc2SHong Zhang 1190d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1191d0d4cfc2SHong Zhang /* 1192d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1193d0d4cfc2SHong Zhang */ 1194d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1195d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1196d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1197d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1198d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 119926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1200d0d4cfc2SHong Zhang } 1201dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1202d0d4cfc2SHong Zhang } 1203d0d4cfc2SHong Zhang 1204e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1205d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1206d0d4cfc2SHong Zhang 1207d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1208d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1209d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1210d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1211d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1212d0d4cfc2SHong Zhang nztot = nzA + nzB; 1213d0d4cfc2SHong Zhang 1214d0d4cfc2SHong Zhang cmap = mat->garray; 1215d0d4cfc2SHong Zhang if (v || idx) { 1216d0d4cfc2SHong Zhang if (nztot) { 1217d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1218d0d4cfc2SHong Zhang PetscInt imark = -1; 1219d0d4cfc2SHong Zhang if (v) { 1220d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1221d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1222d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1223d0d4cfc2SHong Zhang else break; 1224d0d4cfc2SHong Zhang } 1225d0d4cfc2SHong Zhang imark = i; 1226d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1227d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1228d0d4cfc2SHong Zhang } 1229d0d4cfc2SHong Zhang if (idx) { 1230d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1231d0d4cfc2SHong Zhang if (imark > -1) { 1232d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1233d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1234d0d4cfc2SHong Zhang } 1235d0d4cfc2SHong Zhang } else { 1236d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 123726fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1238d0d4cfc2SHong Zhang else break; 1239d0d4cfc2SHong Zhang } 1240d0d4cfc2SHong Zhang imark = i; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1243d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1244d0d4cfc2SHong Zhang } 1245d0d4cfc2SHong Zhang } else { 1246d0d4cfc2SHong Zhang if (idx) *idx = 0; 1247d0d4cfc2SHong Zhang if (v) *v = 0; 1248d0d4cfc2SHong Zhang } 1249d0d4cfc2SHong Zhang } 1250d0d4cfc2SHong Zhang *nz = nztot; 1251d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1252d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1253a30f8f8cSSatish Balay PetscFunctionReturn(0); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay 12564a2ae208SSatish Balay #undef __FUNCT__ 12574a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12581302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1259a30f8f8cSSatish Balay { 1260a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1261a30f8f8cSSatish Balay 1262a30f8f8cSSatish Balay PetscFunctionBegin; 1263e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1264a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1265a30f8f8cSSatish Balay PetscFunctionReturn(0); 1266a30f8f8cSSatish Balay } 1267a30f8f8cSSatish Balay 12684a2ae208SSatish Balay #undef __FUNCT__ 1269d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1270d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1271d0d4cfc2SHong Zhang { 1272d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1273d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1274d0d4cfc2SHong Zhang 1275d0d4cfc2SHong Zhang PetscFunctionBegin; 1276d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1277d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1278d0d4cfc2SHong Zhang } 1279d0d4cfc2SHong Zhang #undef __FUNCT__ 1280d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1281d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1282d0d4cfc2SHong Zhang { 1283d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1284d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1285d0d4cfc2SHong Zhang 1286d0d4cfc2SHong Zhang PetscFunctionBegin; 1287d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1288d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1289d0d4cfc2SHong Zhang } 1290d0d4cfc2SHong Zhang 1291d0d4cfc2SHong Zhang #undef __FUNCT__ 129299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 129399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 129499cafbc1SBarry Smith { 129599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 129699cafbc1SBarry Smith PetscErrorCode ierr; 129799cafbc1SBarry Smith 129899cafbc1SBarry Smith PetscFunctionBegin; 129999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 130099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 130199cafbc1SBarry Smith PetscFunctionReturn(0); 130299cafbc1SBarry Smith } 130399cafbc1SBarry Smith 130499cafbc1SBarry Smith #undef __FUNCT__ 130599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 130699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 130799cafbc1SBarry Smith { 130899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 130999cafbc1SBarry Smith PetscErrorCode ierr; 131099cafbc1SBarry Smith 131199cafbc1SBarry Smith PetscFunctionBegin; 131299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 131399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 131499cafbc1SBarry Smith PetscFunctionReturn(0); 131599cafbc1SBarry Smith } 131699cafbc1SBarry Smith 131736032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 131836032a97SHong Zhang Input: isrow - distributed(parallel), 131936032a97SHong Zhang iscol_local - locally owned (seq) 132036032a97SHong Zhang */ 132199cafbc1SBarry Smith #undef __FUNCT__ 132236032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 132336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13248f46ffcaSHong Zhang { 13258f46ffcaSHong Zhang PetscErrorCode ierr; 13268f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13278f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 132836032a97SHong Zhang 132936032a97SHong Zhang PetscFunctionBegin; 13308f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13318f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13321098a8e8SHong Zhang if (sz1 > sz2) { 13331098a8e8SHong Zhang *flg = PETSC_FALSE; 13341098a8e8SHong Zhang PetscFunctionReturn(0); 13351098a8e8SHong Zhang } 13368f46ffcaSHong Zhang 13378f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13388f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13398f46ffcaSHong Zhang 13408f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13418f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 13428f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 13438f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 13448f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13458f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13468f46ffcaSHong Zhang 13478f46ffcaSHong Zhang nmatch=0; 13488f46ffcaSHong Zhang k = 0; 13498f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13508f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13518f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13528f46ffcaSHong Zhang k = j; nmatch++; 13538f46ffcaSHong Zhang break; 13548f46ffcaSHong Zhang } 13558f46ffcaSHong Zhang } 13568f46ffcaSHong Zhang } 13578f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13588f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13598f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 13608f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 13611098a8e8SHong Zhang if (nmatch < sz1) { 13621098a8e8SHong Zhang *flg = PETSC_FALSE; 13631098a8e8SHong Zhang } else { 13641098a8e8SHong Zhang *flg = PETSC_TRUE; 13651098a8e8SHong Zhang } 136636032a97SHong Zhang PetscFunctionReturn(0); 13678f46ffcaSHong Zhang } 136836032a97SHong Zhang 136936032a97SHong Zhang #undef __FUNCT__ 137036032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 137136032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 137236032a97SHong Zhang { 137336032a97SHong Zhang PetscErrorCode ierr; 137436032a97SHong Zhang IS iscol_local; 137536032a97SHong Zhang PetscInt csize; 137636032a97SHong Zhang PetscBool isequal; 137736032a97SHong Zhang 137836032a97SHong Zhang PetscFunctionBegin; 137936032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 138036032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 138136032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 138236032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 138336032a97SHong Zhang } else { 138436032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 138536032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 138636032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 13878f46ffcaSHong Zhang } 13888f46ffcaSHong Zhang 13898f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 139036032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 13918f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 13928f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 13938f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 13948f46ffcaSHong Zhang } 13958f46ffcaSHong Zhang PetscFunctionReturn(0); 13968f46ffcaSHong Zhang } 13978f46ffcaSHong Zhang 13988f46ffcaSHong Zhang #undef __FUNCT__ 13994a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1400dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1401a30f8f8cSSatish Balay { 1402a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1403dfbe8321SBarry Smith PetscErrorCode ierr; 1404a30f8f8cSSatish Balay 1405a30f8f8cSSatish Balay PetscFunctionBegin; 1406a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1407a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1408a30f8f8cSSatish Balay PetscFunctionReturn(0); 1409a30f8f8cSSatish Balay } 1410a30f8f8cSSatish Balay 14114a2ae208SSatish Balay #undef __FUNCT__ 14124a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1413dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1414a30f8f8cSSatish Balay { 1415a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1416a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1417dfbe8321SBarry Smith PetscErrorCode ierr; 1418a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1419a30f8f8cSSatish Balay 1420a30f8f8cSSatish Balay PetscFunctionBegin; 1421d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 142226fbe8dcSKarl Rupp 1423a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 142426fbe8dcSKarl Rupp 1425a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1426a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 142726fbe8dcSKarl Rupp 1428a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 142926fbe8dcSKarl Rupp 1430a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1431a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1432a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1433a30f8f8cSSatish Balay info->nz_used = isend[0]; 1434a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1435a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1436a30f8f8cSSatish Balay info->memory = isend[3]; 1437a30f8f8cSSatish Balay info->mallocs = isend[4]; 1438a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1439b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 144026fbe8dcSKarl Rupp 1441a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1442a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1443a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1444a30f8f8cSSatish Balay info->memory = irecv[3]; 1445a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1446a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1447b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 144826fbe8dcSKarl Rupp 1449a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1450a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1451a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1452a30f8f8cSSatish Balay info->memory = irecv[3]; 1453a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1454f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1455a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1456a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1457a30f8f8cSSatish Balay info->factor_mallocs = 0; 1458a30f8f8cSSatish Balay PetscFunctionReturn(0); 1459a30f8f8cSSatish Balay } 1460a30f8f8cSSatish Balay 14614a2ae208SSatish Balay #undef __FUNCT__ 14624a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1463ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1464a30f8f8cSSatish Balay { 1465a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1466d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1467dfbe8321SBarry Smith PetscErrorCode ierr; 1468a30f8f8cSSatish Balay 1469a30f8f8cSSatish Balay PetscFunctionBegin; 1470e98b92d7SKris Buschelman switch (op) { 1471512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1472e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1474a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1475e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147643674050SBarry Smith MatCheckPreallocated(A,1); 14774e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14784e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1479e98b92d7SKris Buschelman break; 1480e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 148143674050SBarry Smith MatCheckPreallocated(A,1); 14824e0d8c25SBarry Smith a->roworiented = flg; 148326fbe8dcSKarl Rupp 14844e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14854e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1486e98b92d7SKris Buschelman break; 14874e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1488290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1489e98b92d7SKris Buschelman break; 1490e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14914e0d8c25SBarry Smith a->donotstash = flg; 1492e98b92d7SKris Buschelman break; 1493e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 14944e0d8c25SBarry Smith a->ht_flag = flg; 1495e98b92d7SKris Buschelman break; 14969a4540c5SBarry Smith case MAT_HERMITIAN: 149743674050SBarry Smith MatCheckPreallocated(A,1); 1498e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1499eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 150026fbe8dcSKarl Rupp 1501547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1502eeffb40dSHong Zhang break; 1503ffa07934SHong Zhang case MAT_SPD: 1504ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1505ffa07934SHong Zhang A->spd = flg; 1506ffa07934SHong Zhang if (flg) { 1507ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1508ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1509ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1510ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1511ffa07934SHong Zhang } 1512ffa07934SHong Zhang break; 151377e54ba9SKris Buschelman case MAT_SYMMETRIC: 151443674050SBarry Smith MatCheckPreallocated(A,1); 1515eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1516eeffb40dSHong Zhang break; 151777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 151843674050SBarry Smith MatCheckPreallocated(A,1); 1519eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1520eeffb40dSHong Zhang break; 15219a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1522e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1523290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 152477e54ba9SKris Buschelman break; 1525d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15264e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1527d0d4cfc2SHong Zhang break; 1528d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15294e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1530d0d4cfc2SHong Zhang break; 1531d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15324e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1533d0d4cfc2SHong Zhang break; 1534e98b92d7SKris Buschelman default: 1535e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1536a30f8f8cSSatish Balay } 1537a30f8f8cSSatish Balay PetscFunctionReturn(0); 1538a30f8f8cSSatish Balay } 1539a30f8f8cSSatish Balay 15404a2ae208SSatish Balay #undef __FUNCT__ 15418115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1542fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1543a30f8f8cSSatish Balay { 1544dfbe8321SBarry Smith PetscErrorCode ierr; 15456e111a19SKarl Rupp 1546a30f8f8cSSatish Balay PetscFunctionBegin; 1547815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1548999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1549fc4dec0aSBarry Smith } 15508115998fSBarry Smith PetscFunctionReturn(0); 1551a30f8f8cSSatish Balay } 1552a30f8f8cSSatish Balay 15534a2ae208SSatish Balay #undef __FUNCT__ 15544a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1555dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1556a30f8f8cSSatish Balay { 1557a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1558a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1559dfbe8321SBarry Smith PetscErrorCode ierr; 15605e90f9d9SHong Zhang PetscInt nv,m,n; 1561ace3abfcSBarry Smith PetscBool flg; 1562a30f8f8cSSatish Balay 1563a30f8f8cSSatish Balay PetscFunctionBegin; 1564a30f8f8cSSatish Balay if (ll != rr) { 1565b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1566e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1567a30f8f8cSSatish Balay } 1568b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1569b3bf805bSHong Zhang 15705e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1571e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1572b3bf805bSHong Zhang 15735e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1574e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15755e90f9d9SHong Zhang 1576ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15775e90f9d9SHong Zhang 15785e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 15790298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 15805e90f9d9SHong Zhang 15815e90f9d9SHong Zhang /* scale the diagonal part */ 1582a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1583a30f8f8cSSatish Balay 15845e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1585ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15860298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1587a30f8f8cSSatish Balay PetscFunctionReturn(0); 1588a30f8f8cSSatish Balay } 1589a30f8f8cSSatish Balay 15904a2ae208SSatish Balay #undef __FUNCT__ 15914a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1592dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1593a30f8f8cSSatish Balay { 1594f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1595dfbe8321SBarry Smith PetscErrorCode ierr; 1596a30f8f8cSSatish Balay 1597a30f8f8cSSatish Balay PetscFunctionBegin; 1598a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1599a30f8f8cSSatish Balay PetscFunctionReturn(0); 1600a30f8f8cSSatish Balay } 1601a30f8f8cSSatish Balay 16026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1603a30f8f8cSSatish Balay 16044a2ae208SSatish Balay #undef __FUNCT__ 16054a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1606ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1607a30f8f8cSSatish Balay { 1608a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1609a30f8f8cSSatish Balay Mat a,b,c,d; 1610ace3abfcSBarry Smith PetscBool flg; 1611dfbe8321SBarry Smith PetscErrorCode ierr; 1612a30f8f8cSSatish Balay 1613a30f8f8cSSatish Balay PetscFunctionBegin; 1614a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1615a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1616a30f8f8cSSatish Balay 1617a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1618abc0a331SBarry Smith if (flg) { 1619a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1620a30f8f8cSSatish Balay } 1621b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1622a30f8f8cSSatish Balay PetscFunctionReturn(0); 1623a30f8f8cSSatish Balay } 1624a30f8f8cSSatish Balay 16254a2ae208SSatish Balay #undef __FUNCT__ 16263c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 16273c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16283c896bc6SHong Zhang { 16293c896bc6SHong Zhang PetscErrorCode ierr; 16303c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16313c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16323c896bc6SHong Zhang 16333c896bc6SHong Zhang PetscFunctionBegin; 16343c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16353c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1636d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16373c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1638d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16393c896bc6SHong Zhang } else { 16403c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16413c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16423c896bc6SHong Zhang } 16433c896bc6SHong Zhang PetscFunctionReturn(0); 16443c896bc6SHong Zhang } 16453c896bc6SHong Zhang 16463c896bc6SHong Zhang #undef __FUNCT__ 16474994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 16484994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1649273d9f13SBarry Smith { 1650dfbe8321SBarry Smith PetscErrorCode ierr; 1651273d9f13SBarry Smith 1652273d9f13SBarry Smith PetscFunctionBegin; 1653535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1654273d9f13SBarry Smith PetscFunctionReturn(0); 1655273d9f13SBarry Smith } 1656a5e6ed63SBarry Smith 16574fe895cdSHong Zhang #undef __FUNCT__ 16584fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 16594fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16604fe895cdSHong Zhang { 16614fe895cdSHong Zhang PetscErrorCode ierr; 16624fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16634fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16644fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16654fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16664fe895cdSHong Zhang 16674fe895cdSHong Zhang PetscFunctionBegin; 16684fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16694fe895cdSHong Zhang PetscScalar alpha = a; 16704fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16714fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1672c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 16738b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16744fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16754fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1676c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 16778b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1678a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1679ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1680ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1681ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1682ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 16834fe895cdSHong Zhang } else { 16844de5dceeSHong Zhang Mat B; 16854de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 16864de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1687d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 16884de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 16894de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 16904de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 16914de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 16924de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 16934de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 16944de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 16954de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 16964de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 16974de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 16984de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 16994de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 170028be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 17014de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 17024de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1703d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17044de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17054fe895cdSHong Zhang } 17064fe895cdSHong Zhang PetscFunctionReturn(0); 17074fe895cdSHong Zhang } 17084fe895cdSHong Zhang 1709a5e6ed63SBarry Smith #undef __FUNCT__ 1710a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 17111302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1712a5e6ed63SBarry Smith { 17136849ba73SBarry Smith PetscErrorCode ierr; 17141302d50aSBarry Smith PetscInt i; 1715afebec48SHong Zhang PetscBool flg; 1716a5e6ed63SBarry Smith 17176849ba73SBarry Smith PetscFunctionBegin; 1718afebec48SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1719a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1720a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1721afebec48SHong Zhang if (!flg) { 1722b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1723a5e6ed63SBarry Smith } 17244dcd73b1SHong Zhang } 1725a5e6ed63SBarry Smith PetscFunctionReturn(0); 1726a5e6ed63SBarry Smith } 1727a5e6ed63SBarry Smith 17287d68702bSBarry Smith #undef __FUNCT__ 17297d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ" 17307d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17317d68702bSBarry Smith { 17327d68702bSBarry Smith PetscErrorCode ierr; 17337d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17346f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17357d68702bSBarry Smith 17367d68702bSBarry Smith PetscFunctionBegin; 17376f33a894SBarry Smith if (!Y->preallocated) { 17387d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17396f33a894SBarry Smith } else if (!aij->nz) { 1740b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17416f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1742b83222d8SBarry Smith aij->nonew = nonew; 17437d68702bSBarry Smith } 17447d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17457d68702bSBarry Smith PetscFunctionReturn(0); 17467d68702bSBarry Smith } 17477d68702bSBarry Smith 17483b49f96aSBarry Smith #undef __FUNCT__ 17493b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ" 17503b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 17513b49f96aSBarry Smith { 17523b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17533b49f96aSBarry Smith PetscErrorCode ierr; 17543b49f96aSBarry Smith 17553b49f96aSBarry Smith PetscFunctionBegin; 17563b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 17573b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 17583b49f96aSBarry Smith if (d) { 17593b49f96aSBarry Smith PetscInt rstart; 17603b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 17613b49f96aSBarry Smith *d += rstart/A->rmap->bs; 17623b49f96aSBarry Smith 17633b49f96aSBarry Smith } 17643b49f96aSBarry Smith PetscFunctionReturn(0); 17653b49f96aSBarry Smith } 17663b49f96aSBarry Smith 1767*a5b7ff6bSBarry Smith #undef __FUNCT__ 1768*a5b7ff6bSBarry Smith #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1769*a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1770*a5b7ff6bSBarry Smith { 1771*a5b7ff6bSBarry Smith PetscFunctionBegin; 1772*a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1773*a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1774*a5b7ff6bSBarry Smith } 17753b49f96aSBarry Smith 1776a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17773964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1778a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1779a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1780a9d4b620SHong Zhang MatMult_MPISBAIJ, 178197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1782431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1783431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1784a30f8f8cSSatish Balay 0, 1785a30f8f8cSSatish Balay 0, 1786a30f8f8cSSatish Balay 0, 178797304618SKris Buschelman /* 10*/ 0, 1788a30f8f8cSSatish Balay 0, 1789a30f8f8cSSatish Balay 0, 179041f059aeSBarry Smith MatSOR_MPISBAIJ, 1791a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 179297304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1793a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1794a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1795a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1796a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 179797304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1798a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1799a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1800a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1801d519adbfSMatthew Knepley /* 24*/ 0, 1802a30f8f8cSSatish Balay 0, 1803a30f8f8cSSatish Balay 0, 1804a30f8f8cSSatish Balay 0, 1805a30f8f8cSSatish Balay 0, 18064994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1807b5df2d14SHong Zhang 0, 1808a30f8f8cSSatish Balay 0, 1809*a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1810a30f8f8cSSatish Balay 0, 1811d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1812a30f8f8cSSatish Balay 0, 1813a30f8f8cSSatish Balay 0, 1814a30f8f8cSSatish Balay 0, 1815a30f8f8cSSatish Balay 0, 1816d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1817a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1818d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1819a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18203c896bc6SHong Zhang MatCopy_MPISBAIJ, 1821d519adbfSMatthew Knepley /* 44*/ 0, 1822a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18237d68702bSBarry Smith MatShift_MPISBAIJ, 1824a30f8f8cSSatish Balay 0, 1825a30f8f8cSSatish Balay 0, 1826f73d5cc4SBarry Smith /* 49*/ 0, 1827a30f8f8cSSatish Balay 0, 1828a30f8f8cSSatish Balay 0, 1829a30f8f8cSSatish Balay 0, 1830a30f8f8cSSatish Balay 0, 1831d519adbfSMatthew Knepley /* 54*/ 0, 1832a30f8f8cSSatish Balay 0, 1833a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1834a30f8f8cSSatish Balay 0, 1835a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18368f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1837a30f8f8cSSatish Balay 0, 1838a30f8f8cSSatish Balay 0, 1839357abbc8SBarry Smith 0, 184024d5174aSHong Zhang 0, 1841d519adbfSMatthew Knepley /* 64*/ 0, 184224d5174aSHong Zhang 0, 184324d5174aSHong Zhang 0, 184424d5174aSHong Zhang 0, 184524d5174aSHong Zhang 0, 1846d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 184724d5174aSHong Zhang 0, 184897304618SKris Buschelman 0, 184997304618SKris Buschelman 0, 185097304618SKris Buschelman 0, 1851d519adbfSMatthew Knepley /* 74*/ 0, 185297304618SKris Buschelman 0, 185397304618SKris Buschelman 0, 185497304618SKris Buschelman 0, 185597304618SKris Buschelman 0, 1856d519adbfSMatthew Knepley /* 79*/ 0, 185797304618SKris Buschelman 0, 185897304618SKris Buschelman 0, 185997304618SKris Buschelman 0, 18605bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1861d519adbfSMatthew Knepley /* 84*/ 0, 1862865e5f61SKris Buschelman 0, 1863865e5f61SKris Buschelman 0, 1864865e5f61SKris Buschelman 0, 1865865e5f61SKris Buschelman 0, 1866d519adbfSMatthew Knepley /* 89*/ 0, 1867865e5f61SKris Buschelman 0, 1868865e5f61SKris Buschelman 0, 1869865e5f61SKris Buschelman 0, 1870865e5f61SKris Buschelman 0, 1871d519adbfSMatthew Knepley /* 94*/ 0, 1872865e5f61SKris Buschelman 0, 1873865e5f61SKris Buschelman 0, 187499cafbc1SBarry Smith 0, 187599cafbc1SBarry Smith 0, 1876d519adbfSMatthew Knepley /* 99*/ 0, 187799cafbc1SBarry Smith 0, 187899cafbc1SBarry Smith 0, 187999cafbc1SBarry Smith 0, 188099cafbc1SBarry Smith 0, 1881d519adbfSMatthew Knepley /*104*/ 0, 188299cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1883d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1884d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 188595936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 188695936485SShri Abhyankar /*109*/ 0, 188795936485SShri Abhyankar 0, 188895936485SShri Abhyankar 0, 188995936485SShri Abhyankar 0, 18903b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 189195936485SShri Abhyankar /*114*/ 0, 189295936485SShri Abhyankar 0, 189395936485SShri Abhyankar 0, 189495936485SShri Abhyankar 0, 189595936485SShri Abhyankar 0, 189695936485SShri Abhyankar /*119*/ 0, 189795936485SShri Abhyankar 0, 189895936485SShri Abhyankar 0, 18993964eb88SJed Brown 0, 19003964eb88SJed Brown 0, 19013964eb88SJed Brown /*124*/ 0, 19023964eb88SJed Brown 0, 19033964eb88SJed Brown 0, 19043964eb88SJed Brown 0, 19053964eb88SJed Brown 0, 19063964eb88SJed Brown /*129*/ 0, 19073964eb88SJed Brown 0, 19083964eb88SJed Brown 0, 19093964eb88SJed Brown 0, 19103964eb88SJed Brown 0, 19113964eb88SJed Brown /*134*/ 0, 19123964eb88SJed Brown 0, 19133964eb88SJed Brown 0, 19143964eb88SJed Brown 0, 19153964eb88SJed Brown 0, 19163964eb88SJed Brown /*139*/ 0, 1917f9426fe0SMark Adams 0, 191859f5e6ceSHong Zhang 0, 191959f5e6ceSHong Zhang 0, 192059f5e6ceSHong Zhang 0, 192159f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 192299cafbc1SBarry Smith }; 1923a30f8f8cSSatish Balay 19244a2ae208SSatish Balay #undef __FUNCT__ 1925a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1926b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1927a23d5eceSKris Buschelman { 1928a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1929dfbe8321SBarry Smith PetscErrorCode ierr; 1930535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1931a23d5eceSKris Buschelman 1932a23d5eceSKris Buschelman PetscFunctionBegin; 193333d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 193426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 193526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1936e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1937899cda47SBarry Smith 1938a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1939d0f46423SBarry Smith mbs = B->rmap->n/bs; 1940d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1941c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1942a23d5eceSKris Buschelman 1943d0f46423SBarry Smith B->rmap->bs = bs; 1944a23d5eceSKris Buschelman b->bs2 = bs*bs; 1945a23d5eceSKris Buschelman b->mbs = mbs; 1946a23d5eceSKris Buschelman b->Mbs = Mbs; 1947de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1948de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1949a23d5eceSKris Buschelman 1950a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1951d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1952a23d5eceSKris Buschelman } 1953d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1954d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1955a23d5eceSKris Buschelman 1956d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1957d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1958a23d5eceSKris Buschelman 1959526dfc15SBarry Smith if (!B->preallocated) { 1960f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1961d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 19629c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 19633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1964f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1965d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 19664aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 19673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1968ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1969526dfc15SBarry Smith } 1970a23d5eceSKris Buschelman 1971526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1972526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 197326fbe8dcSKarl Rupp 1974526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1975a23d5eceSKris Buschelman PetscFunctionReturn(0); 1976a23d5eceSKris Buschelman } 1977a23d5eceSKris Buschelman 1978dfb205c3SBarry Smith #undef __FUNCT__ 1979dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1980dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1981dfb205c3SBarry Smith { 1982dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1983dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1984dfb205c3SBarry Smith const PetscInt *JJ =0; 1985dfb205c3SBarry Smith PetscScalar *values=0; 1986dfb205c3SBarry Smith PetscErrorCode ierr; 1987dfb205c3SBarry Smith 1988dfb205c3SBarry Smith PetscFunctionBegin; 1989ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1990dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1991dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1992dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1993dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1994e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1995dfb205c3SBarry Smith m = B->rmap->n/bs; 1996dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1997dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1998dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1999dfb205c3SBarry Smith 2000dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2001dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2002dfb205c3SBarry Smith for (i=0; i<m; i++) { 2003dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2004dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2005dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 2006dfb205c3SBarry Smith JJ = jj + ii[i]; 2007dfb205c3SBarry Smith for (j=0; j<nz; j++) { 2008dfb205c3SBarry Smith if (*JJ >= cstart) break; 2009dfb205c3SBarry Smith JJ++; 2010dfb205c3SBarry Smith } 2011dfb205c3SBarry Smith d = 0; 2012dfb205c3SBarry Smith for (; j<nz; j++) { 2013dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2014dfb205c3SBarry Smith d++; 2015dfb205c3SBarry Smith } 2016dfb205c3SBarry Smith d_nnz[i] = d; 2017dfb205c3SBarry Smith o_nnz[i] = nz - d; 2018dfb205c3SBarry Smith } 2019dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2020dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2021dfb205c3SBarry Smith 2022dfb205c3SBarry Smith values = (PetscScalar*)V; 2023dfb205c3SBarry Smith if (!values) { 2024785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2025dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2026dfb205c3SBarry Smith } 2027dfb205c3SBarry Smith for (i=0; i<m; i++) { 2028dfb205c3SBarry Smith PetscInt row = i + rstart; 2029dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2030dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2031dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2032dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2033dfb205c3SBarry Smith } 2034dfb205c3SBarry Smith 2035dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2036dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2037dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20387827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2039dfb205c3SBarry Smith PetscFunctionReturn(0); 2040dfb205c3SBarry Smith } 2041dfb205c3SBarry Smith 20420bad9183SKris Buschelman /*MC 2043fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2044828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2045828413b8SBarry Smith the matrix is stored. 2046828413b8SBarry Smith 2047828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2048828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20490bad9183SKris Buschelman 20500bad9183SKris Buschelman Options Database Keys: 20510bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20520bad9183SKris Buschelman 20530bad9183SKris Buschelman Level: beginner 20540bad9183SKris Buschelman 20550bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 20560bad9183SKris Buschelman M*/ 20570bad9183SKris Buschelman 2058cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2059aa5a9175SDahai Guo 2060a23d5eceSKris Buschelman #undef __FUNCT__ 20614a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 20628cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2063b5df2d14SHong Zhang { 2064b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2065dfbe8321SBarry Smith PetscErrorCode ierr; 206694ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2067b5df2d14SHong Zhang 2068b5df2d14SHong Zhang PetscFunctionBegin; 2069b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2070b0a32e0cSBarry Smith B->data = (void*)b; 2071b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2072b5df2d14SHong Zhang 2073b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2074b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2075b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2076b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 207726fbe8dcSKarl Rupp 2078ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2079ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2080b5df2d14SHong Zhang 2081b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2082854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2083b5df2d14SHong Zhang 2084b5df2d14SHong Zhang /* build cache for off array entries formed */ 2085ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 208626fbe8dcSKarl Rupp 2087b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20880298fd71SBarry Smith b->colmap = NULL; 20890298fd71SBarry Smith b->garray = NULL; 2090b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2091b5df2d14SHong Zhang 2092b5df2d14SHong Zhang /* stuff used in block assembly */ 2093b5df2d14SHong Zhang b->barray = 0; 2094b5df2d14SHong Zhang 2095b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2096b5df2d14SHong Zhang b->lvec = 0; 2097b5df2d14SHong Zhang b->Mvctx = 0; 209840781036SHong Zhang b->slvec0 = 0; 209940781036SHong Zhang b->slvec0b = 0; 210040781036SHong Zhang b->slvec1 = 0; 210140781036SHong Zhang b->slvec1a = 0; 210240781036SHong Zhang b->slvec1b = 0; 210340781036SHong Zhang b->sMvctx = 0; 2104b5df2d14SHong Zhang 2105b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2106b5df2d14SHong Zhang b->rowindices = 0; 2107b5df2d14SHong Zhang b->rowvalues = 0; 2108b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2109b5df2d14SHong Zhang 2110b5df2d14SHong Zhang /* hash table stuff */ 2111b5df2d14SHong Zhang b->ht = 0; 2112b5df2d14SHong Zhang b->hd = 0; 2113b5df2d14SHong Zhang b->ht_size = 0; 2114b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2115b5df2d14SHong Zhang b->ht_fact = 0; 2116b5df2d14SHong Zhang b->ht_total_ct = 0; 2117b5df2d14SHong Zhang b->ht_insert_ct = 0; 2118b5df2d14SHong Zhang 21197a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 21207a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21217a868f3eSHong Zhang 212259ffdab8SBarry Smith b->in_loc = 0; 212359ffdab8SBarry Smith b->v_loc = 0; 212459ffdab8SBarry Smith b->n_loc = 0; 212594ae4db5SBarry Smith 2126bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2127bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2128bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2129bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 21306214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21316214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21326214f412SHong Zhang #endif 2133aa5a9175SDahai Guo 213423ce1328SBarry Smith B->symmetric = PETSC_TRUE; 213523ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 213623ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 213723ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 213826fbe8dcSKarl Rupp 213917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 214094ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 214194ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 214294ae4db5SBarry Smith if (flg) { 214394ae4db5SBarry Smith PetscReal fact = 1.39; 214494ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 214594ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 214694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 214794ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 214894ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 214994ae4db5SBarry Smith } 215094ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2151b5df2d14SHong Zhang PetscFunctionReturn(0); 2152b5df2d14SHong Zhang } 2153b5df2d14SHong Zhang 2154209238afSKris Buschelman /*MC 2155002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2156209238afSKris Buschelman 2157209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2158209238afSKris Buschelman and MATMPISBAIJ otherwise. 2159209238afSKris Buschelman 2160209238afSKris Buschelman Options Database Keys: 2161209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2162209238afSKris Buschelman 2163209238afSKris Buschelman Level: beginner 2164209238afSKris Buschelman 2165209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2166209238afSKris Buschelman M*/ 2167209238afSKris Buschelman 21684a2ae208SSatish Balay #undef __FUNCT__ 21694a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 2170b5df2d14SHong Zhang /*@C 2171b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2172b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2173b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2174b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2175b5df2d14SHong Zhang 2176b5df2d14SHong Zhang Collective on Mat 2177b5df2d14SHong Zhang 2178b5df2d14SHong Zhang Input Parameters: 21791c4f3114SJed Brown + B - the matrix 2180bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2181bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2182b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2183b5df2d14SHong Zhang submatrix (same for all local rows) 2184b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 21856d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 21860298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 218795742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2188b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2189b5df2d14SHong Zhang submatrix (same for all local rows). 2190b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2191c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 21920298fd71SBarry Smith (possibly different for each block row) or NULL. 2193b5df2d14SHong Zhang 2194b5df2d14SHong Zhang 2195b5df2d14SHong Zhang Options Database Keys: 2196b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2197b5df2d14SHong Zhang block calculations (much slower) 2198b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2199b5df2d14SHong Zhang 2200b5df2d14SHong Zhang Notes: 2201b5df2d14SHong Zhang 2202b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2203b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2204b5df2d14SHong Zhang 220549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 220649a6f317SBarry Smith 2207b5df2d14SHong Zhang Storage Information: 2208b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2209b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2210b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2211b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2212b5df2d14SHong Zhang 2213b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2214b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22150298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2216b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2217b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2218b5df2d14SHong Zhang 2219aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2220aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2221aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2222aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2223aa95bbe8SBarry Smith 2224b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2225b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2226b5df2d14SHong Zhang 2227b5df2d14SHong Zhang .vb 2228b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2229a4b1a0f6SJed Brown -------------------------- 2230c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2231c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2232c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2233a4b1a0f6SJed Brown -------------------------- 2234b5df2d14SHong Zhang .ve 2235b5df2d14SHong Zhang 2236b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2237b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22386d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22396d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2240b5df2d14SHong Zhang 22416d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22426d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2243c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2244c2fc9fa9SBarry Smith 2245b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2246b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2247b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2248b5df2d14SHong Zhang matrices. 2249b5df2d14SHong Zhang 2250b5df2d14SHong Zhang Level: intermediate 2251b5df2d14SHong Zhang 2252b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2253b5df2d14SHong Zhang 2254ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2255b5df2d14SHong Zhang @*/ 22567087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2257b5df2d14SHong Zhang { 22584ac538c5SBarry Smith PetscErrorCode ierr; 2259b5df2d14SHong Zhang 2260b5df2d14SHong Zhang PetscFunctionBegin; 22616ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22626ba663aaSJed Brown PetscValidType(B,1); 22636ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 22644ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2265b5df2d14SHong Zhang PetscFunctionReturn(0); 2266b5df2d14SHong Zhang } 2267b5df2d14SHong Zhang 22684a2ae208SSatish Balay #undef __FUNCT__ 226969b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2270a30f8f8cSSatish Balay /*@C 227169b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2272a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2273a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2274a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2275a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2276a30f8f8cSSatish Balay 2277a30f8f8cSSatish Balay Collective on MPI_Comm 2278a30f8f8cSSatish Balay 2279a30f8f8cSSatish Balay Input Parameters: 2280a30f8f8cSSatish Balay + comm - MPI communicator 2281bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2282bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2283a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2284a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2285a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2286a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2287a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2288a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2289a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2290a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2291a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2292a30f8f8cSSatish Balay submatrix (same for all local rows) 2293a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 22946d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 22950298fd71SBarry Smith (possibly different for each block block row) or NULL. 229695742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 229795742e49SBarry Smith set its value even if it is zero. 2298a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2299a30f8f8cSSatish Balay submatrix (same for all local rows). 2300a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2301a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23020298fd71SBarry Smith each block row) or NULL. 2303a30f8f8cSSatish Balay 2304a30f8f8cSSatish Balay Output Parameter: 2305a30f8f8cSSatish Balay . A - the matrix 2306a30f8f8cSSatish Balay 2307a30f8f8cSSatish Balay Options Database Keys: 2308a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2309a30f8f8cSSatish Balay block calculations (much slower) 2310a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2311a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2312a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2313a30f8f8cSSatish Balay 2314175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2315ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2316175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2317175b88e8SBarry Smith 2318a30f8f8cSSatish Balay Notes: 2319d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23206d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2321d1be2dadSMatthew Knepley 2322a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2323a30f8f8cSSatish Balay (possibly both). 2324a30f8f8cSSatish Balay 2325a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2326a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2327a30f8f8cSSatish Balay 232849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 232949a6f317SBarry Smith 2330a30f8f8cSSatish Balay Storage Information: 2331a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2332a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2333a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2334a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2335a30f8f8cSSatish Balay 2336a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2337a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23380298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2339a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2340a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2341a30f8f8cSSatish Balay 2342a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2343a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2344a30f8f8cSSatish Balay 2345a30f8f8cSSatish Balay .vb 2346a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2347a4b1a0f6SJed Brown -------------------------- 2348c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2349c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2350c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2351a4b1a0f6SJed Brown -------------------------- 2352a30f8f8cSSatish Balay .ve 2353a30f8f8cSSatish Balay 2354a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2355a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23566d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23576d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2358a30f8f8cSSatish Balay 23596d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23606d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2361a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2362a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2363a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2364a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2365a30f8f8cSSatish Balay matrices. 2366a30f8f8cSSatish Balay 2367a30f8f8cSSatish Balay Level: intermediate 2368a30f8f8cSSatish Balay 2369a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2370a30f8f8cSSatish Balay 237169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2372a30f8f8cSSatish Balay @*/ 2373a30f8f8cSSatish Balay 237469b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2375a30f8f8cSSatish Balay { 23766849ba73SBarry Smith PetscErrorCode ierr; 23771302d50aSBarry Smith PetscMPIInt size; 2378a30f8f8cSSatish Balay 2379a30f8f8cSSatish Balay PetscFunctionBegin; 2380f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2381f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2382273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2383273d9f13SBarry Smith if (size > 1) { 2384b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2385b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2386273d9f13SBarry Smith } else { 2387273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2388273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2389273d9f13SBarry Smith } 2390a30f8f8cSSatish Balay PetscFunctionReturn(0); 2391a30f8f8cSSatish Balay } 2392a30f8f8cSSatish Balay 2393a30f8f8cSSatish Balay 23944a2ae208SSatish Balay #undef __FUNCT__ 23954a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 23966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2397a30f8f8cSSatish Balay { 2398a30f8f8cSSatish Balay Mat mat; 2399a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2400dfbe8321SBarry Smith PetscErrorCode ierr; 2401d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2402387bc808SHong Zhang PetscScalar *array; 2403a30f8f8cSSatish Balay 2404a30f8f8cSSatish Balay PetscFunctionBegin; 2405a30f8f8cSSatish Balay *newmat = 0; 240626fbe8dcSKarl Rupp 2407ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2408d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 24097adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24101d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 24111e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 24121e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2413e1b6402fSHong Zhang 2414d5f3da31SBarry Smith mat->factortype = matin->factortype; 2415273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 241682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24177fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24187fff6886SHong Zhang 2419b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2420a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2421a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2422a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2423a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2424a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2425a30f8f8cSSatish Balay 2426899cda47SBarry Smith 2427a30f8f8cSSatish Balay a->size = oldmat->size; 2428a30f8f8cSSatish Balay a->rank = oldmat->rank; 2429a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2430a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2431a30f8f8cSSatish Balay a->rowindices = 0; 2432a30f8f8cSSatish Balay a->rowvalues = 0; 2433a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2434a30f8f8cSSatish Balay a->barray = 0; 2435899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2436899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2437899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2438899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2439a30f8f8cSSatish Balay 2440a30f8f8cSSatish Balay /* hash table stuff */ 2441a30f8f8cSSatish Balay a->ht = 0; 2442a30f8f8cSSatish Balay a->hd = 0; 2443a30f8f8cSSatish Balay a->ht_size = 0; 2444a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2445a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2446a30f8f8cSSatish Balay a->ht_total_ct = 0; 2447a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2448a30f8f8cSSatish Balay 2449899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2450a30f8f8cSSatish Balay if (oldmat->colmap) { 2451a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2452a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2453a30f8f8cSSatish Balay #else 2454854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 24553bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 24561302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2457a30f8f8cSSatish Balay #endif 2458a30f8f8cSSatish Balay } else a->colmap = 0; 2459387bc808SHong Zhang 2460a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2461785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 24623bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 24631302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2464a30f8f8cSSatish Balay } else a->garray = 0; 2465a30f8f8cSSatish Balay 2466ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2467a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 24683bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2469a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 24703bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 247182327fa8SHong Zhang 247282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 24733bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 247482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 24753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2476387bc808SHong Zhang 2477387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 24781ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2479778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2480778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 24811ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 24821ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2483778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 24841ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 24853bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 24863bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 24873bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 24883bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 24893bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2490387bc808SHong Zhang 2491387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2492387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2493387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 24943bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 249582327fa8SHong Zhang 2496a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 24973bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2498a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 24993bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2500140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2501a30f8f8cSSatish Balay *newmat = mat; 2502a30f8f8cSSatish Balay PetscFunctionReturn(0); 2503a30f8f8cSSatish Balay } 2504a30f8f8cSSatish Balay 25054a2ae208SSatish Balay #undef __FUNCT__ 25065bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2507112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 250895936485SShri Abhyankar { 250995936485SShri Abhyankar PetscErrorCode ierr; 251095936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 251195936485SShri Abhyankar PetscScalar *vals,*buf; 2512ce94432eSBarry Smith MPI_Comm comm; 251395936485SShri Abhyankar MPI_Status status; 2514adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2515adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 251695936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 25173059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 251895936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2519461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 252095936485SShri Abhyankar int fd; 252195936485SShri Abhyankar 252295936485SShri Abhyankar PetscFunctionBegin; 2523c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2524c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2525ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 25260298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 25270298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 252895936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 25293059b6faSBarry Smith if (bs < 0) bs = 1; 253095936485SShri Abhyankar 253195936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 253295936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 253395936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 25345872f025SBarry Smith if (!rank) { 253595936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 253695936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 253702f61395SBarry Smith if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 253895936485SShri Abhyankar } 253995936485SShri Abhyankar 254095936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 254126fbe8dcSKarl Rupp M = header[1]; 254226fbe8dcSKarl Rupp N = header[2]; 254395936485SShri Abhyankar 254495936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2545461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2546461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 254795936485SShri Abhyankar 254895936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 254995936485SShri Abhyankar 255095936485SShri Abhyankar /* 255195936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 255295936485SShri Abhyankar divisible by the blocksize 255395936485SShri Abhyankar */ 255495936485SShri Abhyankar Mbs = M/bs; 255595936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 255695936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 255795936485SShri Abhyankar else Mbs++; 255895936485SShri Abhyankar if (extra_rows &&!rank) { 255995936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 256095936485SShri Abhyankar } 256195936485SShri Abhyankar 256295936485SShri Abhyankar /* determine ownership of all rows */ 256395936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 256495936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 256595936485SShri Abhyankar m = mbs*bs; 256695936485SShri Abhyankar } else { /* User Set */ 256795936485SShri Abhyankar m = newmat->rmap->n; 256895936485SShri Abhyankar mbs = m/bs; 256995936485SShri Abhyankar } 2570dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 25714dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 257295936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 257395936485SShri Abhyankar rowners[0] = 0; 257495936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 257595936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 257695936485SShri Abhyankar rstart = rowners[rank]; 257795936485SShri Abhyankar rend = rowners[rank+1]; 257895936485SShri Abhyankar 257995936485SShri Abhyankar /* distribute row lengths to all processors */ 2580785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 258195936485SShri Abhyankar if (!rank) { 2582854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 258395936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 258495936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2585785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 258695936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 258795936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 258895936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 258995936485SShri Abhyankar } else { 259095936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 259195936485SShri Abhyankar } 259295936485SShri Abhyankar 259395936485SShri Abhyankar if (!rank) { /* procs[0] */ 259495936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2595785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 259695936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 259795936485SShri Abhyankar for (i=0; i<size; i++) { 259895936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 259995936485SShri Abhyankar procsnz[i] += rowlengths[j]; 260095936485SShri Abhyankar } 260195936485SShri Abhyankar } 260295936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 260395936485SShri Abhyankar 260495936485SShri Abhyankar /* determine max buffer needed and allocate it */ 260595936485SShri Abhyankar maxnz = 0; 260695936485SShri Abhyankar for (i=0; i<size; i++) { 260795936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 260895936485SShri Abhyankar } 2609785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 261095936485SShri Abhyankar 261195936485SShri Abhyankar /* read in my part of the matrix column indices */ 261295936485SShri Abhyankar nz = procsnz[0]; 2613785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 261495936485SShri Abhyankar mycols = ibuf; 261595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 261695936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 261726fbe8dcSKarl Rupp if (size == 1) { 261826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 261926fbe8dcSKarl Rupp } 262095936485SShri Abhyankar 262195936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 262295936485SShri Abhyankar for (i=1; i<size-1; i++) { 262395936485SShri Abhyankar nz = procsnz[i]; 262495936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 262595936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 262695936485SShri Abhyankar } 262795936485SShri Abhyankar /* read in the stuff for the last proc */ 262895936485SShri Abhyankar if (size != 1) { 262995936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 263095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 263195936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 263295936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 263395936485SShri Abhyankar } 263495936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 263595936485SShri Abhyankar } else { /* procs[i], i>0 */ 263695936485SShri Abhyankar /* determine buffer space needed for message */ 263795936485SShri Abhyankar nz = 0; 263826fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2639785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 264095936485SShri Abhyankar mycols = ibuf; 264195936485SShri Abhyankar /* receive message of column indices*/ 264295936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 264395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 264495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 264595936485SShri Abhyankar } 264695936485SShri Abhyankar 264795936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2648dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2649dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 265095936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265195936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265295936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265395936485SShri Abhyankar rowcount = 0; 265495936485SShri Abhyankar nzcount = 0; 265595936485SShri Abhyankar for (i=0; i<mbs; i++) { 265695936485SShri Abhyankar dcount = 0; 265795936485SShri Abhyankar odcount = 0; 265895936485SShri Abhyankar for (j=0; j<bs; j++) { 265995936485SShri Abhyankar kmax = locrowlens[rowcount]; 266095936485SShri Abhyankar for (k=0; k<kmax; k++) { 266195936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 266295936485SShri Abhyankar if (!mask[tmp]) { 266395936485SShri Abhyankar mask[tmp] = 1; 266495936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 266595936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 266695936485SShri Abhyankar } 266795936485SShri Abhyankar } 266895936485SShri Abhyankar rowcount++; 266995936485SShri Abhyankar } 267095936485SShri Abhyankar 267195936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 267295936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 267395936485SShri Abhyankar 267495936485SShri Abhyankar /* zero out the mask elements we set */ 267595936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 267695936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 267795936485SShri Abhyankar } 267895936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 267995936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 26806816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 268195936485SShri Abhyankar 268295936485SShri Abhyankar if (!rank) { 2683785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 268495936485SShri Abhyankar /* read in my part of the matrix numerical values */ 268595936485SShri Abhyankar nz = procsnz[0]; 268695936485SShri Abhyankar vals = buf; 268795936485SShri Abhyankar mycols = ibuf; 268895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 268995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 269026fbe8dcSKarl Rupp if (size == 1) { 269126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 269226fbe8dcSKarl Rupp } 269395936485SShri Abhyankar 269495936485SShri Abhyankar /* insert into matrix */ 269595936485SShri Abhyankar jj = rstart*bs; 269695936485SShri Abhyankar for (i=0; i<m; i++) { 269795936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 269895936485SShri Abhyankar mycols += locrowlens[i]; 269995936485SShri Abhyankar vals += locrowlens[i]; 270095936485SShri Abhyankar jj++; 270195936485SShri Abhyankar } 270295936485SShri Abhyankar 270395936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 270495936485SShri Abhyankar for (i=1; i<size-1; i++) { 270595936485SShri Abhyankar nz = procsnz[i]; 270695936485SShri Abhyankar vals = buf; 270795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 270895936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 270995936485SShri Abhyankar } 271095936485SShri Abhyankar /* the last proc */ 271195936485SShri Abhyankar if (size != 1) { 271295936485SShri Abhyankar nz = procsnz[i] - extra_rows; 271395936485SShri Abhyankar vals = buf; 271495936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 271595936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 271695936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 271795936485SShri Abhyankar } 271895936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 271995936485SShri Abhyankar 272095936485SShri Abhyankar } else { 272195936485SShri Abhyankar /* receive numeric values */ 2722785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 272395936485SShri Abhyankar 272495936485SShri Abhyankar /* receive message of values*/ 272595936485SShri Abhyankar vals = buf; 272695936485SShri Abhyankar mycols = ibuf; 272795936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 272895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 272995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 273095936485SShri Abhyankar 273195936485SShri Abhyankar /* insert into matrix */ 273295936485SShri Abhyankar jj = rstart*bs; 273395936485SShri Abhyankar for (i=0; i<m; i++) { 273495936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 273595936485SShri Abhyankar mycols += locrowlens[i]; 273695936485SShri Abhyankar vals += locrowlens[i]; 273795936485SShri Abhyankar jj++; 273895936485SShri Abhyankar } 273995936485SShri Abhyankar } 274095936485SShri Abhyankar 274195936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 274295936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 274395936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 274495936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 274595936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 274695936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 274795936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 274895936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 274995936485SShri Abhyankar PetscFunctionReturn(0); 275095936485SShri Abhyankar } 275195936485SShri Abhyankar 275295936485SShri Abhyankar #undef __FUNCT__ 27534a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2754dcf5cc72SBarry Smith /*XXXXX@ 2755a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2756a30f8f8cSSatish Balay 2757a30f8f8cSSatish Balay Input Parameters: 2758a30f8f8cSSatish Balay . mat - the matrix 2759a30f8f8cSSatish Balay . fact - factor 2760a30f8f8cSSatish Balay 2761c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2762a30f8f8cSSatish Balay 2763a30f8f8cSSatish Balay Level: advanced 2764a30f8f8cSSatish Balay 2765a30f8f8cSSatish Balay Notes: 2766a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2767a30f8f8cSSatish Balay 2768a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2769a30f8f8cSSatish Balay 2770a30f8f8cSSatish Balay .seealso: MatSetOption() 2771dcf5cc72SBarry Smith @XXXXX*/ 2772dcf5cc72SBarry Smith 277324d5174aSHong Zhang 27744a2ae208SSatish Balay #undef __FUNCT__ 2775985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2776985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 277724d5174aSHong Zhang { 277824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2779f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2780ca54ac64SHong Zhang PetscReal atmp; 278187828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2782dfbe8321SBarry Smith PetscErrorCode ierr; 27831302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 27841302d50aSBarry Smith PetscMPIInt rank,size; 27851302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 278687828ca2SBarry Smith PetscScalar *va; 27878a1c53f2SBarry Smith MatScalar *ba; 2788f4c0e9e4SHong Zhang MPI_Status stat; 278924d5174aSHong Zhang 279024d5174aSHong Zhang PetscFunctionBegin; 2791e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 27920298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 27931ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2794f4c0e9e4SHong Zhang 2795ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2796ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2797f4c0e9e4SHong Zhang 2798d0f46423SBarry Smith bs = A->rmap->bs; 2799f4c0e9e4SHong Zhang mbs = a->mbs; 2800f4c0e9e4SHong Zhang Mbs = a->Mbs; 2801f4c0e9e4SHong Zhang ba = b->a; 2802f4c0e9e4SHong Zhang bi = b->i; 2803f4c0e9e4SHong Zhang bj = b->j; 2804f4c0e9e4SHong Zhang 2805f4c0e9e4SHong Zhang /* find ownerships */ 2806d0f46423SBarry Smith rowners_bs = A->rmap->range; 2807f4c0e9e4SHong Zhang 2808f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2809785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2810ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2811f4c0e9e4SHong Zhang 2812f4c0e9e4SHong Zhang /* row_max for B */ 2813b8475685SHong Zhang if (rank != size-1) { 2814f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2815f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2816f4c0e9e4SHong Zhang brow = bs*i; 2817f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2818f4c0e9e4SHong Zhang bcol = bs*(*bj); 2819f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2820ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 282104d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2822f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2823f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2824ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2825ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2826f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2827f4c0e9e4SHong Zhang } 2828f4c0e9e4SHong Zhang } 2829f4c0e9e4SHong Zhang bj++; 2830f4c0e9e4SHong Zhang } 2831f4c0e9e4SHong Zhang } 2832f4c0e9e4SHong Zhang 2833f4c0e9e4SHong Zhang /* send values to its owners */ 2834f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2835f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2836ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2837ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2838ca54ac64SHong Zhang } 2839f4c0e9e4SHong Zhang } 2840f4c0e9e4SHong Zhang 2841f4c0e9e4SHong Zhang /* receive values */ 2842ca54ac64SHong Zhang if (rank) { 2843f4c0e9e4SHong Zhang rvalues = work; 2844ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2845f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2846ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2847f4c0e9e4SHong Zhang /* process values */ 2848f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2849ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2850f4c0e9e4SHong Zhang } 2851f4c0e9e4SHong Zhang } 2852ca54ac64SHong Zhang } 2853f4c0e9e4SHong Zhang 28541ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2855ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 285624d5174aSHong Zhang PetscFunctionReturn(0); 285724d5174aSHong Zhang } 28582798e883SHong Zhang 28592798e883SHong Zhang #undef __FUNCT__ 286041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 286141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 28622798e883SHong Zhang { 28632798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2864dfbe8321SBarry Smith PetscErrorCode ierr; 2865d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 28663649974fSBarry Smith PetscScalar *x,*ptr,*from; 2867ffe4fb16SHong Zhang Vec bb1; 28683649974fSBarry Smith const PetscScalar *b; 2869ffe4fb16SHong Zhang 2870ffe4fb16SHong Zhang PetscFunctionBegin; 2871e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2872e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2873ffe4fb16SHong Zhang 2874a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 287541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2876a2b30743SBarry Smith PetscFunctionReturn(0); 2877a2b30743SBarry Smith } 2878a2b30743SBarry Smith 2879ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2880ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 288141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2882ffe4fb16SHong Zhang its--; 2883ffe4fb16SHong Zhang } 2884ffe4fb16SHong Zhang 2885ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2886ffe4fb16SHong Zhang while (its--) { 2887ffe4fb16SHong Zhang 2888ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2889ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2890ffe4fb16SHong Zhang 2891ffe4fb16SHong Zhang /* copy xx into slvec0a */ 28921ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 28931ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2894ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 28951ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2896ffe4fb16SHong Zhang 2897efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2898ffe4fb16SHong Zhang 2899ffe4fb16SHong Zhang /* copy bb into slvec1a */ 29001ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 29013649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2902ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 29031ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2904ffe4fb16SHong Zhang 2905ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2906fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2907ffe4fb16SHong Zhang 2908ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 29091ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2910a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2911ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2912ffe4fb16SHong Zhang 2913ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2914ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2915ffe4fb16SHong Zhang 2916ffe4fb16SHong Zhang /* local diagonal sweep */ 291741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2918ffe4fb16SHong Zhang } 29196bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2920fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 292141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2922fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 292341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2924fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2925fa22f6d0SBarry Smith Vec xx1; 2926ace3abfcSBarry Smith PetscBool hasop; 292720f1ed55SBarry Smith const PetscScalar *diag; 2928887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 292920f1ed55SBarry Smith PetscInt i,n; 2930fa22f6d0SBarry Smith 2931fa22f6d0SBarry Smith if (!mat->xx1) { 2932fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2933fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2934fa22f6d0SBarry Smith } 2935fa22f6d0SBarry Smith xx1 = mat->xx1; 2936fa22f6d0SBarry Smith bb1 = mat->bb1; 2937fa22f6d0SBarry Smith 293841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2939fa22f6d0SBarry Smith 2940fa22f6d0SBarry Smith if (!mat->diag) { 2941effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 29422a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2943fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2944fa22f6d0SBarry Smith } 2945fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2946fa22f6d0SBarry Smith 2947fa22f6d0SBarry Smith if (hasop) { 2948fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2949887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 295020f1ed55SBarry Smith } else { 295120f1ed55SBarry Smith /* 295220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 295320f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2954887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 295520f1ed55SBarry Smith */ 295620f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29573649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29583649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 295920f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 296020f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2961887ee2caSBarry Smith if (omega == 1.0) { 296226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 296320f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2964887ee2caSBarry Smith } else { 296526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2966887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2967887ee2caSBarry Smith } 296820f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29693649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29703649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 297120f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 297220f1ed55SBarry Smith } 2973fa22f6d0SBarry Smith 2974fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2975fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2976fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2977fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2978fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2979fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2980fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2981fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2982fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2983fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2984effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2985fa22f6d0SBarry Smith 2986fa22f6d0SBarry Smith /* local sweep */ 298741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2988fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2989f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2990ffe4fb16SHong Zhang PetscFunctionReturn(0); 2991ffe4fb16SHong Zhang } 2992ffe4fb16SHong Zhang 2993ffe4fb16SHong Zhang #undef __FUNCT__ 299441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 299541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2996ffe4fb16SHong Zhang { 2997ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2998dfbe8321SBarry Smith PetscErrorCode ierr; 29992798e883SHong Zhang Vec lvec1,bb1; 30002798e883SHong Zhang 30012798e883SHong Zhang PetscFunctionBegin; 3002e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3003e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 30042798e883SHong Zhang 3005c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 30062798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 300741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 30082798e883SHong Zhang its--; 30092798e883SHong Zhang } 30102798e883SHong Zhang 30112798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 30122798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 30132798e883SHong Zhang while (its--) { 3014ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30152798e883SHong Zhang 30162798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 30172798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3018efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 30192798e883SHong Zhang 3020ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30212798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3022ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30232798e883SHong Zhang 30242798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3025efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 30262798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 30272798e883SHong Zhang 3028ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30292798e883SHong Zhang 3030c14dc6b6SHong Zhang /* diagonal sweep */ 303141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 30322798e883SHong Zhang } 30336bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 30346bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 30356bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 30362798e883SHong Zhang PetscFunctionReturn(0); 30372798e883SHong Zhang } 30382798e883SHong Zhang 3039dfb205c3SBarry Smith #undef __FUNCT__ 3040dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 3041dfb205c3SBarry Smith /*@ 3042dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3043dfb205c3SBarry Smith CSR format the local rows. 3044dfb205c3SBarry Smith 3045dfb205c3SBarry Smith Collective on MPI_Comm 3046dfb205c3SBarry Smith 3047dfb205c3SBarry Smith Input Parameters: 3048dfb205c3SBarry Smith + comm - MPI communicator 3049dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3050dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3051dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3052dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3053dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3054dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3055dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3056dfb205c3SBarry Smith . i - row indices 3057dfb205c3SBarry Smith . j - column indices 3058dfb205c3SBarry Smith - a - matrix values 3059dfb205c3SBarry Smith 3060dfb205c3SBarry Smith Output Parameter: 3061dfb205c3SBarry Smith . mat - the matrix 3062dfb205c3SBarry Smith 3063dfb205c3SBarry Smith Level: intermediate 3064dfb205c3SBarry Smith 3065dfb205c3SBarry Smith Notes: 3066dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3067dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3068dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3069dfb205c3SBarry Smith 3070dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3071dfb205c3SBarry Smith 3072dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3073dfb205c3SBarry Smith 3074dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 307569b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3076dfb205c3SBarry Smith @*/ 30777087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3078dfb205c3SBarry Smith { 3079dfb205c3SBarry Smith PetscErrorCode ierr; 3080dfb205c3SBarry Smith 3081dfb205c3SBarry Smith 3082dfb205c3SBarry Smith PetscFunctionBegin; 3083f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3084dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3085dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3086dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3087dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3088dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3089dfb205c3SBarry Smith PetscFunctionReturn(0); 3090dfb205c3SBarry Smith } 3091dfb205c3SBarry Smith 3092dfb205c3SBarry Smith 3093dfb205c3SBarry Smith #undef __FUNCT__ 3094dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 3095dfb205c3SBarry Smith /*@C 3096dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3097dfb205c3SBarry Smith (the default parallel PETSc format). 3098dfb205c3SBarry Smith 3099dfb205c3SBarry Smith Collective on MPI_Comm 3100dfb205c3SBarry Smith 3101dfb205c3SBarry Smith Input Parameters: 31021c4f3114SJed Brown + B - the matrix 3103dfb205c3SBarry Smith . bs - the block size 3104dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3105dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3106dfb205c3SBarry Smith - v - optional values in the matrix 3107dfb205c3SBarry Smith 3108dfb205c3SBarry Smith Level: developer 3109dfb205c3SBarry Smith 3110dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3111dfb205c3SBarry Smith 311269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3113dfb205c3SBarry Smith @*/ 31147087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3115dfb205c3SBarry Smith { 31164ac538c5SBarry Smith PetscErrorCode ierr; 3117dfb205c3SBarry Smith 3118dfb205c3SBarry Smith PetscFunctionBegin; 31194ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3120dfb205c3SBarry Smith PetscFunctionReturn(0); 3121dfb205c3SBarry Smith } 3122dfb205c3SBarry Smith 3123de4b53ebSHong Zhang #undef __FUNCT__ 312410c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 312510c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 31264dcd73b1SHong Zhang { 31274dcd73b1SHong Zhang PetscErrorCode ierr; 312810c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 312910c56fdeSHong Zhang PetscInt *indx; 313010c56fdeSHong Zhang PetscScalar *values; 3131dfb205c3SBarry Smith 31324dcd73b1SHong Zhang PetscFunctionBegin; 31334dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 313410c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 313510c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 313610c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 313710c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 31384dcd73b1SHong Zhang 313910c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 314010c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 314110c56fdeSHong Zhang if (n == PETSC_DECIDE) { 314210c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 314310c56fdeSHong Zhang } 314410c56fdeSHong Zhang /* Check sum(n) = Nbs */ 3145b2566f29SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 314610c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 314710c56fdeSHong Zhang 314810c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 314910c56fdeSHong Zhang rstart -= mbs; 31504dcd73b1SHong Zhang 31514dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 315210c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3153e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 315410c56fdeSHong Zhang for (i=0; i<mbs; i++) { 31554dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 31564dcd73b1SHong Zhang nnz = nnz/bs; 31574dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 31584dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 31594dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 31604dcd73b1SHong Zhang } 3161e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 31624dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 31634dcd73b1SHong Zhang 31644dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 316510c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 31664dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 31674dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 31684dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 31694dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 31704dcd73b1SHong Zhang } 31714dcd73b1SHong Zhang 317210c56fdeSHong Zhang /* numeric phase */ 31734dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 317410c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 31754dcd73b1SHong Zhang 3176e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 31774dcd73b1SHong Zhang for (i=0; i<m; i++) { 31784dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31794dcd73b1SHong Zhang Ii = i + rstart; 318010c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 31814dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31824dcd73b1SHong Zhang } 3183e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 318410c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 318510c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31864dcd73b1SHong Zhang PetscFunctionReturn(0); 31874dcd73b1SHong Zhang } 3188