xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision a7cc72af8dae79365b4ec1ba6d96bf0305bf6125)
1a30f8f8cSSatish Balay 
2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
3a30f8f8cSSatish Balay #include "mpisbaij.h"
4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
5a30f8f8cSSatish Balay 
6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
10177431f27SBarry Smith       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102a30f8f8cSSatish Balay       if (nrow >= rmax) { \
103a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1041302d50aSBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
105a30f8f8cSSatish Balay         MatScalar *new_a; \
106a30f8f8cSSatish Balay  \
10777431f27SBarry Smith         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
108a30f8f8cSSatish Balay  \
109a30f8f8cSSatish Balay         /* malloc new storage space */ \
1101302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \
11182502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1121302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
113a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
114a30f8f8cSSatish Balay  \
115a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
116a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
117a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
1181302d50aSBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
119a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
1201302d50aSBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
121a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
12287828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
124a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
125a30f8f8cSSatish Balay         /* free up old matrix storage */ \
126a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
127a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
128a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
129a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
130a30f8f8cSSatish Balay         } \
131a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
132a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
133a30f8f8cSSatish Balay  \
134a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
135a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
1361302d50aSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \
1376c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE; \
138a30f8f8cSSatish Balay         a->reallocs++; \
1396c6c5352SBarry Smith         a->nz++; \
140a30f8f8cSSatish Balay       } \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       a_noinsert:; \
151a30f8f8cSSatish Balay     ailen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
154a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
155a30f8f8cSSatish Balay { \
156a30f8f8cSSatish Balay     brow = row/bs;  \
157a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
158a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
159a30f8f8cSSatish Balay       bcol = col/bs; \
160a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
161a30f8f8cSSatish Balay       low = 0; high = nrow; \
162a30f8f8cSSatish Balay       while (high-low > 3) { \
163a30f8f8cSSatish Balay         t = (low+high)/2; \
164a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
165a30f8f8cSSatish Balay         else              low  = t; \
166a30f8f8cSSatish Balay       } \
167a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
168a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
169a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
170a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
171a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
172a30f8f8cSSatish Balay           else                    *bap  = value;  \
173a30f8f8cSSatish Balay           goto b_noinsert; \
174a30f8f8cSSatish Balay         } \
175a30f8f8cSSatish Balay       } \
176a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
17777431f27SBarry Smith       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
178a30f8f8cSSatish Balay       if (nrow >= rmax) { \
179a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1801302d50aSBarry Smith         PetscInt  new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
181a30f8f8cSSatish Balay         MatScalar *new_a; \
182a30f8f8cSSatish Balay  \
18377431f27SBarry Smith         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
184a30f8f8cSSatish Balay  \
185a30f8f8cSSatish Balay         /* malloc new storage space */ \
1861302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \
18782502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1881302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
189a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
190a30f8f8cSSatish Balay  \
191a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
192a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
193a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
1941302d50aSBarry Smith         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
195a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
1961302d50aSBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
197a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
198a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
199a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
200a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
201a30f8f8cSSatish Balay         /* free up old matrix storage */ \
202a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
203a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
204a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
205a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
206a30f8f8cSSatish Balay         } \
207a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
208a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
209a30f8f8cSSatish Balay  \
210a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
211a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
2121302d50aSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \
213a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
214a30f8f8cSSatish Balay         b->reallocs++; \
215a30f8f8cSSatish Balay         b->nz++; \
216a30f8f8cSSatish Balay       } \
217a30f8f8cSSatish Balay       N = nrow++ - 1;  \
218a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
219a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
220a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
221a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
222a30f8f8cSSatish Balay       } \
223a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
224a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
225a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
226a30f8f8cSSatish Balay       b_noinsert:; \
227a30f8f8cSSatish Balay     bilen[brow] = nrow; \
228a30f8f8cSSatish Balay }
229a30f8f8cSSatish Balay #endif
230a30f8f8cSSatish Balay 
231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2324a2ae208SSatish Balay #undef __FUNCT__
2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
235a30f8f8cSSatish Balay {
236a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
237dfbe8321SBarry Smith   PetscErrorCode ierr;
2381302d50aSBarry Smith   PetscInt       i,N = m*n;
239a30f8f8cSSatish Balay   MatScalar      *vsingle;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   PetscFunctionBegin;
242a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
243a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
24482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
245a30f8f8cSSatish Balay     b->setvalueslen  = N;
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
248a30f8f8cSSatish Balay 
249a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
250a30f8f8cSSatish Balay     vsingle[i] = v[i];
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
254a30f8f8cSSatish Balay }
255a30f8f8cSSatish Balay 
2564a2ae208SSatish Balay #undef __FUNCT__
2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
259a30f8f8cSSatish Balay {
260a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
261dfbe8321SBarry Smith   PetscErrorCode ierr;
2621302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
263a30f8f8cSSatish Balay   MatScalar      *vsingle;
264a30f8f8cSSatish Balay 
265a30f8f8cSSatish Balay   PetscFunctionBegin;
266a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
267a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
26882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
269a30f8f8cSSatish Balay     b->setvalueslen  = N;
270a30f8f8cSSatish Balay   }
271a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
272a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
273a30f8f8cSSatish Balay     vsingle[i] = v[i];
274a30f8f8cSSatish Balay   }
275a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
276a30f8f8cSSatish Balay   PetscFunctionReturn(0);
277a30f8f8cSSatish Balay }
278a30f8f8cSSatish Balay 
2794a2ae208SSatish Balay #undef __FUNCT__
2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
2811302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
282a30f8f8cSSatish Balay {
283a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
284dfbe8321SBarry Smith   PetscErrorCode ierr;
2851302d50aSBarry Smith   PetscInt       i,N = m*n;
286a30f8f8cSSatish Balay   MatScalar      *vsingle;
287a30f8f8cSSatish Balay 
288a30f8f8cSSatish Balay   PetscFunctionBegin;
2891302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
2904d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
291a30f8f8cSSatish Balay }
292a30f8f8cSSatish Balay 
2934a2ae208SSatish Balay #undef __FUNCT__
2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
2951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
296a30f8f8cSSatish Balay {
297a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
298dfbe8321SBarry Smith   PetscErrorCode ierr;
2991302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
300a30f8f8cSSatish Balay   MatScalar      *vsingle;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   PetscFunctionBegin;
3031302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
3044d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
305a30f8f8cSSatish Balay }
306a30f8f8cSSatish Balay #endif
307a30f8f8cSSatish Balay 
308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
309a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
310a30f8f8cSSatish Balay */
3114a2ae208SSatish Balay #undef __FUNCT__
312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
3131302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
314a30f8f8cSSatish Balay {
315a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
316a30f8f8cSSatish Balay   MatScalar      value;
317b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
318dfbe8321SBarry Smith   PetscErrorCode ierr;
3191302d50aSBarry Smith   PetscInt       i,j,row,col;
3201302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
3211302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
322521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
323a30f8f8cSSatish Balay 
324a30f8f8cSSatish Balay   /* Some Variables required in the macro */
325a30f8f8cSSatish Balay   Mat            A = baij->A;
326a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
3271302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
328a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
329a30f8f8cSSatish Balay 
330a30f8f8cSSatish Balay   Mat            B = baij->B;
331a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
3321302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
333a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
334a30f8f8cSSatish Balay 
3351302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
3361302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
337a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
338a30f8f8cSSatish Balay 
339a30f8f8cSSatish Balay   /* for stash */
3401302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
341f65c83cfSHong Zhang   MatScalar     *v_loc=0;
342a30f8f8cSSatish Balay 
343a30f8f8cSSatish Balay   PetscFunctionBegin;
344a30f8f8cSSatish Balay 
345a30f8f8cSSatish Balay   if(!baij->donotstash){
3461302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
34782502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
348a30f8f8cSSatish Balay   }
349a30f8f8cSSatish Balay 
350a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
351a30f8f8cSSatish Balay     if (im[i] < 0) continue;
352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
35377431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
354a30f8f8cSSatish Balay #endif
355a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
356a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
357a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
358f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
359a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
360a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
361a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
362a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
363a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
364a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
365a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
366a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
36877431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
369a30f8f8cSSatish Balay #endif
370a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
371a30f8f8cSSatish Balay           if (mat->was_assembled) {
372a30f8f8cSSatish Balay             if (!baij->colmap) {
373653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
374a30f8f8cSSatish Balay             }
375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
376a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
37771730473SSatish Balay             col  = col - 1;
378a30f8f8cSSatish Balay #else
37971730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
380a30f8f8cSSatish Balay #endif
381a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
382a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
383a30f8f8cSSatish Balay               col =  in[j];
384a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
385a30f8f8cSSatish Balay               B = baij->B;
386a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
387a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
388a30f8f8cSSatish Balay               ba=b->a;
38971730473SSatish Balay             } else col += in[j]%bs;
390a30f8f8cSSatish Balay           } else col = in[j];
391a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
392a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
393a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
394a30f8f8cSSatish Balay         }
395a30f8f8cSSatish Balay       }
396a30f8f8cSSatish Balay     } else {  /* off processor entry */
397a30f8f8cSSatish Balay       if (!baij->donotstash) {
398a30f8f8cSSatish Balay         n_loc = 0;
399a30f8f8cSSatish Balay         for (j=0; j<n; j++){
400f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
401a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
402a30f8f8cSSatish Balay           if (roworiented) {
403a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
404a30f8f8cSSatish Balay           } else {
405a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
406a30f8f8cSSatish Balay           }
407a30f8f8cSSatish Balay           n_loc++;
408a30f8f8cSSatish Balay         }
409a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
410a30f8f8cSSatish Balay       }
411a30f8f8cSSatish Balay     }
412a30f8f8cSSatish Balay   }
413a30f8f8cSSatish Balay 
414a30f8f8cSSatish Balay   if(!baij->donotstash){
415a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
416a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
417a30f8f8cSSatish Balay   }
418a30f8f8cSSatish Balay   PetscFunctionReturn(0);
419a30f8f8cSSatish Balay }
420a30f8f8cSSatish Balay 
4214a2ae208SSatish Balay #undef __FUNCT__
422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
4231302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
424a30f8f8cSSatish Balay {
4250880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
426f15d580aSBarry Smith   const MatScalar *value;
427f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4280880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
429dfbe8321SBarry Smith   PetscErrorCode  ierr;
4301302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
4311302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
432521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
4330880e062SHong Zhang 
434a30f8f8cSSatish Balay   PetscFunctionBegin;
4350880e062SHong Zhang   if(!barray) {
4360880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4370880e062SHong Zhang     baij->barray = barray;
4380880e062SHong Zhang   }
4390880e062SHong Zhang 
4400880e062SHong Zhang   if (roworiented) {
4410880e062SHong Zhang     stepval = (n-1)*bs;
4420880e062SHong Zhang   } else {
4430880e062SHong Zhang     stepval = (m-1)*bs;
4440880e062SHong Zhang   }
4450880e062SHong Zhang   for (i=0; i<m; i++) {
4460880e062SHong Zhang     if (im[i] < 0) continue;
4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
44877431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
4490880e062SHong Zhang #endif
4500880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4510880e062SHong Zhang       row = im[i] - rstart;
4520880e062SHong Zhang       for (j=0; j<n; j++) {
4530880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4540880e062SHong Zhang         if ((roworiented) && (n == 1)) {
455f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4560880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
457f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4580880e062SHong Zhang         } else { /* Here a copy is required */
4590880e062SHong Zhang           if (roworiented) {
4600880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4610880e062SHong Zhang           } else {
4620880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4630880e062SHong Zhang           }
4640880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4650880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4660880e062SHong Zhang               *barray++  = *value++;
4670880e062SHong Zhang             }
4680880e062SHong Zhang           }
4690880e062SHong Zhang           barray -=bs2;
4700880e062SHong Zhang         }
4710880e062SHong Zhang 
4720880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4730880e062SHong Zhang           col  = in[j] - cstart;
4740880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4750880e062SHong Zhang         }
4760880e062SHong Zhang         else if (in[j] < 0) continue;
4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
47877431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
4790880e062SHong Zhang #endif
4800880e062SHong Zhang         else {
4810880e062SHong Zhang           if (mat->was_assembled) {
4820880e062SHong Zhang             if (!baij->colmap) {
483653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
4840880e062SHong Zhang             }
4850880e062SHong Zhang 
4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4881302d50aSBarry Smith             { PetscInt data;
4890880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4900880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4910880e062SHong Zhang             }
4920880e062SHong Zhang #else
4930880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4940880e062SHong Zhang #endif
4950880e062SHong Zhang #endif
4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4970880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4980880e062SHong Zhang             col  = (col - 1)/bs;
4990880e062SHong Zhang #else
5000880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5010880e062SHong Zhang #endif
5020880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5030880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5040880e062SHong Zhang               col =  in[j];
5050880e062SHong Zhang             }
5060880e062SHong Zhang           }
5070880e062SHong Zhang           else col = in[j];
508e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
5090880e062SHong Zhang         }
5100880e062SHong Zhang       }
5110880e062SHong Zhang     } else {
5120880e062SHong Zhang       if (!baij->donotstash) {
5130880e062SHong Zhang         if (roworiented) {
5140880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5150880e062SHong Zhang         } else {
5160880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5170880e062SHong Zhang         }
5180880e062SHong Zhang       }
5190880e062SHong Zhang     }
5200880e062SHong Zhang   }
5210880e062SHong Zhang   PetscFunctionReturn(0);
522a30f8f8cSSatish Balay }
523a30f8f8cSSatish Balay 
524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
5251302d50aSBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
5261302d50aSBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
5271302d50aSBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
5284a2ae208SSatish Balay #undef __FUNCT__
5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
5301302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
531a30f8f8cSSatish Balay {
532a30f8f8cSSatish Balay   PetscFunctionBegin;
5331302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
53496e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
535a30f8f8cSSatish Balay }
536a30f8f8cSSatish Balay 
5374a2ae208SSatish Balay #undef __FUNCT__
5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
5391302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
540a30f8f8cSSatish Balay {
541a30f8f8cSSatish Balay   PetscFunctionBegin;
5421302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
54396e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
5531302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
55777431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
55877431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
56277431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
56377431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
565a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data --;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584a30f8f8cSSatish Balay     } else {
58529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay  PetscFunctionReturn(0);
589a30f8f8cSSatish Balay }
590a30f8f8cSSatish Balay 
5914a2ae208SSatish Balay #undef __FUNCT__
5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
594a30f8f8cSSatish Balay {
595a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
596dfbe8321SBarry Smith   PetscErrorCode ierr;
597a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
598a30f8f8cSSatish Balay 
599a30f8f8cSSatish Balay   PetscFunctionBegin;
600a30f8f8cSSatish Balay   if (baij->size == 1) {
601a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
602a30f8f8cSSatish Balay   } else {
603a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
604f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
605a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
607a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
608a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
609d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
610a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
611a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
612a30f8f8cSSatish Balay     } else {
61329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
614a30f8f8cSSatish Balay     }
615a30f8f8cSSatish Balay   }
616a30f8f8cSSatish Balay   PetscFunctionReturn(0);
617a30f8f8cSSatish Balay }
618a30f8f8cSSatish Balay 
619a30f8f8cSSatish Balay /*
620a30f8f8cSSatish Balay   Creates the hash table, and sets the table
621a30f8f8cSSatish Balay   This table is created only once.
622a30f8f8cSSatish Balay   If new entried need to be added to the matrix
623a30f8f8cSSatish Balay   then the hash table has to be destroyed and
624a30f8f8cSSatish Balay   recreated.
625a30f8f8cSSatish Balay */
6264a2ae208SSatish Balay #undef __FUNCT__
6274a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
628dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
629a30f8f8cSSatish Balay {
630a30f8f8cSSatish Balay   PetscFunctionBegin;
6311302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
63296e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
633a30f8f8cSSatish Balay }
634a30f8f8cSSatish Balay 
6354a2ae208SSatish Balay #undef __FUNCT__
6364a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
637dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
638a30f8f8cSSatish Balay {
639a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
640dfbe8321SBarry Smith   PetscErrorCode ierr;
6411302d50aSBarry Smith   PetscInt       nstash,reallocs;
642a30f8f8cSSatish Balay   InsertMode     addv;
643a30f8f8cSSatish Balay 
644a30f8f8cSSatish Balay   PetscFunctionBegin;
645a30f8f8cSSatish Balay   if (baij->donotstash) {
646a30f8f8cSSatish Balay     PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
650a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
651a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
65229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
653a30f8f8cSSatish Balay   }
654a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
655a30f8f8cSSatish Balay 
656a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
657a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
658a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
65977431f27SBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);
660a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
66177431f27SBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);
662a30f8f8cSSatish Balay   PetscFunctionReturn(0);
663a30f8f8cSSatish Balay }
664a30f8f8cSSatish Balay 
6654a2ae208SSatish Balay #undef __FUNCT__
6664a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
667dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
668a30f8f8cSSatish Balay {
669a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
670a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
671a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
6726849ba73SBarry Smith   PetscErrorCode ierr;
67313f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
6741302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
67513f74950SBarry Smith   PetscMPIInt    n;
676a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
677a30f8f8cSSatish Balay   MatScalar      *val;
678a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
679a30f8f8cSSatish Balay 
680a30f8f8cSSatish Balay   PetscFunctionBegin;
681a30f8f8cSSatish Balay 
682a30f8f8cSSatish Balay   if (!baij->donotstash) {
683a30f8f8cSSatish Balay     while (1) {
684a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
685a30f8f8cSSatish Balay       if (!flg) break;
686a30f8f8cSSatish Balay 
687a30f8f8cSSatish Balay       for (i=0; i<n;) {
688a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
689a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
690a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
691a30f8f8cSSatish Balay         else       ncols = n-i;
692a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
693a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
694a30f8f8cSSatish Balay         i = j;
695a30f8f8cSSatish Balay       }
696a30f8f8cSSatish Balay     }
697a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
698a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
699a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
700a30f8f8cSSatish Balay        restore the original flags */
701a30f8f8cSSatish Balay     r1 = baij->roworiented;
702a30f8f8cSSatish Balay     r2 = a->roworiented;
703a30f8f8cSSatish Balay     r3 = b->roworiented;
704a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
705a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
706a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
707a30f8f8cSSatish Balay     while (1) {
708a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
709a30f8f8cSSatish Balay       if (!flg) break;
710a30f8f8cSSatish Balay 
711a30f8f8cSSatish Balay       for (i=0; i<n;) {
712a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
713a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
714a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
715a30f8f8cSSatish Balay         else       ncols = n-i;
716a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
717a30f8f8cSSatish Balay         i = j;
718a30f8f8cSSatish Balay       }
719a30f8f8cSSatish Balay     }
720a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
721a30f8f8cSSatish Balay     baij->roworiented = r1;
722a30f8f8cSSatish Balay     a->roworiented    = r2;
723a30f8f8cSSatish Balay     b->roworiented    = r3;
724a30f8f8cSSatish Balay   }
725a30f8f8cSSatish Balay 
726a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
727a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
728a30f8f8cSSatish Balay 
729a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
730a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
731a30f8f8cSSatish Balay   /*
732a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
733a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
734a30f8f8cSSatish Balay   */
735a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
736a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
737a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
738c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
739a30f8f8cSSatish Balay     }
740a30f8f8cSSatish Balay   }
741a30f8f8cSSatish Balay 
742a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
74340781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
744a30f8f8cSSatish Balay   }
745a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
746a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
747a30f8f8cSSatish Balay 
748a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
749a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
750f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
751a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
752a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
753a30f8f8cSSatish Balay   }
754a30f8f8cSSatish Balay #endif
755a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
756c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
757a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
758a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
759a30f8f8cSSatish Balay   }
760a30f8f8cSSatish Balay 
761a30f8f8cSSatish Balay   if (baij->rowvalues) {
762a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
763a30f8f8cSSatish Balay     baij->rowvalues = 0;
764a30f8f8cSSatish Balay   }
7655222a1afSHong Zhang 
766a30f8f8cSSatish Balay   PetscFunctionReturn(0);
767a30f8f8cSSatish Balay }
768a30f8f8cSSatish Balay 
7694a2ae208SSatish Balay #undef __FUNCT__
7704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7716849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
772a30f8f8cSSatish Balay {
773a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
774dfbe8321SBarry Smith   PetscErrorCode    ierr;
775521d7252SBarry Smith   PetscInt          bs = mat->bs;
7761302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
77732077d6dSBarry Smith   PetscTruth        iascii,isdraw;
778b0a32e0cSBarry Smith   PetscViewer       sviewer;
779f3ef73ceSBarry Smith   PetscViewerFormat format;
780a30f8f8cSSatish Balay 
781a30f8f8cSSatish Balay   PetscFunctionBegin;
78232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
783fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
78432077d6dSBarry Smith   if (iascii) {
785b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
786456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
787a30f8f8cSSatish Balay       MatInfo info;
788a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
789a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
79077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
79177431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
792521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
793a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
79477431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
795a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
79677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
797b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
798a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
799a30f8f8cSSatish Balay       PetscFunctionReturn(0);
800fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
80177431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
802a30f8f8cSSatish Balay       PetscFunctionReturn(0);
803a30f8f8cSSatish Balay     }
804a30f8f8cSSatish Balay   }
805a30f8f8cSSatish Balay 
806a30f8f8cSSatish Balay   if (isdraw) {
807b0a32e0cSBarry Smith     PetscDraw       draw;
808a30f8f8cSSatish Balay     PetscTruth isnull;
809b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
810b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
811a30f8f8cSSatish Balay   }
812a30f8f8cSSatish Balay 
813a30f8f8cSSatish Balay   if (size == 1) {
814e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
815a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
816a30f8f8cSSatish Balay   } else {
817a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
818a30f8f8cSSatish Balay     Mat         A;
81965d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
82065d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
8211302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
822a30f8f8cSSatish Balay     MatScalar   *a;
823a30f8f8cSSatish Balay 
824f204ca49SKris Buschelman     /* Should this be the same type as mat? */
825a30f8f8cSSatish Balay     if (!rank) {
826f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
827a30f8f8cSSatish Balay     } else {
828f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
829a30f8f8cSSatish Balay     }
830f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
831521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
832b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
833a30f8f8cSSatish Balay 
834a30f8f8cSSatish Balay     /* copy over the A part */
83565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
836a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
8371302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
838a30f8f8cSSatish Balay 
839a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
840a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
841a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
842a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
843a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
844a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
845a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
846a30f8f8cSSatish Balay           col++; a += bs;
847a30f8f8cSSatish Balay         }
848a30f8f8cSSatish Balay       }
849a30f8f8cSSatish Balay     }
850a30f8f8cSSatish Balay     /* copy over the B part */
85165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
85265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
853a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
854a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
855a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
856a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
857a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
858a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
859a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
860a30f8f8cSSatish Balay           col++; a += bs;
861a30f8f8cSSatish Balay         }
862a30f8f8cSSatish Balay       }
863a30f8f8cSSatish Balay     }
864a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
865a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
866a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
867a30f8f8cSSatish Balay     /*
868a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
869b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
870a30f8f8cSSatish Balay     */
871b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
87265d70643SHong Zhang     if (!rank) {
873e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
874a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
875a30f8f8cSSatish Balay     }
876b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
877a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
878a30f8f8cSSatish Balay   }
879a30f8f8cSSatish Balay   PetscFunctionReturn(0);
880a30f8f8cSSatish Balay }
881a30f8f8cSSatish Balay 
8824a2ae208SSatish Balay #undef __FUNCT__
8834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
884dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
885a30f8f8cSSatish Balay {
886dfbe8321SBarry Smith   PetscErrorCode ierr;
88732077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
888a30f8f8cSSatish Balay 
889a30f8f8cSSatish Balay   PetscFunctionBegin;
89032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
891fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
892b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
893fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
89432077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
895a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
896a30f8f8cSSatish Balay   } else {
8971302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
898a30f8f8cSSatish Balay   }
899a30f8f8cSSatish Balay   PetscFunctionReturn(0);
900a30f8f8cSSatish Balay }
901a30f8f8cSSatish Balay 
9024a2ae208SSatish Balay #undef __FUNCT__
9034a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
904dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
905a30f8f8cSSatish Balay {
906a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
907dfbe8321SBarry Smith   PetscErrorCode ierr;
908a30f8f8cSSatish Balay 
909a30f8f8cSSatish Balay   PetscFunctionBegin;
910a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
91177431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
912a30f8f8cSSatish Balay #endif
913a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
914a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
915a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
916a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
917a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
918a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
919a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
920a30f8f8cSSatish Balay #else
921a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
922a30f8f8cSSatish Balay #endif
923a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
924a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
925a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
92640781036SHong Zhang   if (baij->slvec0) {
92740781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
92840781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
92940781036SHong Zhang   }
93040781036SHong Zhang   if (baij->slvec1) {
93140781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
93240781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
93340781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
93440781036SHong Zhang   }
93540781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
936a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
937a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
938a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
939a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
940a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
941a30f8f8cSSatish Balay #endif
942a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
943901853e0SKris Buschelman 
944901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
945901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
946901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
947901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
948a30f8f8cSSatish Balay   PetscFunctionReturn(0);
949a30f8f8cSSatish Balay }
950a30f8f8cSSatish Balay 
9514a2ae208SSatish Balay #undef __FUNCT__
952a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
953dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
954a9d4b620SHong Zhang {
955a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
956dfbe8321SBarry Smith   PetscErrorCode ierr;
957521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
958a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
959a9d4b620SHong Zhang 
960a9d4b620SHong Zhang   PetscFunctionBegin;
961a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
962a9d4b620SHong Zhang   if (nt != A->n) {
963a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
964a9d4b620SHong Zhang   }
965a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
966a9d4b620SHong Zhang   if (nt != A->m) {
967a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
968a9d4b620SHong Zhang   }
969a9d4b620SHong Zhang 
970a9d4b620SHong Zhang   /* diagonal part */
971a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
972a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
973a9d4b620SHong Zhang 
974a9d4b620SHong Zhang   /* subdiagonal part */
975a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
976a9d4b620SHong Zhang 
977a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9781ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9791ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
980a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9811ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
982a9d4b620SHong Zhang 
983a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9841ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
985a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
986a9d4b620SHong Zhang 
987a9d4b620SHong Zhang   /* supperdiagonal part */
988a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
989a9d4b620SHong Zhang 
990a9d4b620SHong Zhang   PetscFunctionReturn(0);
991a9d4b620SHong Zhang }
992a9d4b620SHong Zhang 
993a9d4b620SHong Zhang #undef __FUNCT__
99440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
995dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
996a30f8f8cSSatish Balay {
997a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
998dfbe8321SBarry Smith   PetscErrorCode ierr;
9991302d50aSBarry Smith   PetscInt       nt;
1000a30f8f8cSSatish Balay 
1001a30f8f8cSSatish Balay   PetscFunctionBegin;
1002a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1003b5df2d14SHong Zhang   if (nt != A->n) {
100429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1005a30f8f8cSSatish Balay   }
1006a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1007b5df2d14SHong Zhang   if (nt != A->m) {
100829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1009a30f8f8cSSatish Balay   }
101065d70643SHong Zhang 
1011b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1012b941877fSHong Zhang   /* do diagonal part */
1013b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1014b941877fSHong Zhang   /* do supperdiagonal part */
1015b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1016b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1017b941877fSHong Zhang   /* do subdiagonal part */
1018b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1019b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1020b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
102165d70643SHong Zhang 
1022a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1023a30f8f8cSSatish Balay }
1024a30f8f8cSSatish Balay 
10254a2ae208SSatish Balay #undef __FUNCT__
10264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1027dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1028a30f8f8cSSatish Balay {
1029de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1030dfbe8321SBarry Smith   PetscErrorCode ierr;
1031521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
1032a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
1033a9d4b620SHong Zhang 
1034a9d4b620SHong Zhang   PetscFunctionBegin;
1035a9d4b620SHong Zhang   /*
103656faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
103756faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1038a9d4b620SHong Zhang   */
1039a9d4b620SHong Zhang   /* diagonal part */
1040a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1041a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1042a9d4b620SHong Zhang 
1043a9d4b620SHong Zhang   /* subdiagonal part */
1044a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1045a9d4b620SHong Zhang 
1046a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10471ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10481ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1049a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
10501ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1051a9d4b620SHong Zhang 
1052a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
10531ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1054a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1055a9d4b620SHong Zhang 
1056a9d4b620SHong Zhang   /* supperdiagonal part */
1057a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1058a9d4b620SHong Zhang 
1059a9d4b620SHong Zhang   PetscFunctionReturn(0);
1060a9d4b620SHong Zhang }
1061a9d4b620SHong Zhang 
1062a9d4b620SHong Zhang #undef __FUNCT__
1063a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1064dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1065a9d4b620SHong Zhang {
1066a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1067dfbe8321SBarry Smith   PetscErrorCode ierr;
1068a30f8f8cSSatish Balay 
1069a30f8f8cSSatish Balay   PetscFunctionBegin;
1070b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1071b941877fSHong Zhang   /* do diagonal part */
1072b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1073b941877fSHong Zhang   /* do supperdiagonal part */
1074b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1075de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1076de8b6608SHong Zhang 
1077b941877fSHong Zhang   /* do subdiagonal part */
1078a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1079a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1080a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1081aa482183SHong Zhang 
1082a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1083a30f8f8cSSatish Balay }
1084a30f8f8cSSatish Balay 
10854a2ae208SSatish Balay #undef __FUNCT__
10864a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1087dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1088a30f8f8cSSatish Balay {
1089dfbe8321SBarry Smith   PetscErrorCode ierr;
10905a7c0312SHong Zhang 
1091a30f8f8cSSatish Balay   PetscFunctionBegin;
10925a7c0312SHong Zhang   ierr = MatMult(A,xx,yy);CHKERRQ(ierr);
10935a7c0312SHong Zhang   PetscFunctionReturn(0);
1094a30f8f8cSSatish Balay }
1095a30f8f8cSSatish Balay 
10964a2ae208SSatish Balay #undef __FUNCT__
10974a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1098dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1099a30f8f8cSSatish Balay {
1100dfbe8321SBarry Smith   PetscErrorCode ierr;
11015a7c0312SHong Zhang 
1102a30f8f8cSSatish Balay   PetscFunctionBegin;
11035a7c0312SHong Zhang   ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr);
11045a7c0312SHong Zhang   PetscFunctionReturn(0);
1105a30f8f8cSSatish Balay }
1106a30f8f8cSSatish Balay 
1107a30f8f8cSSatish Balay /*
1108a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1109a30f8f8cSSatish Balay    diagonal block
1110a30f8f8cSSatish Balay */
11114a2ae208SSatish Balay #undef __FUNCT__
11124a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1113dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1114a30f8f8cSSatish Balay {
1115a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1116dfbe8321SBarry Smith   PetscErrorCode ierr;
1117a30f8f8cSSatish Balay 
1118a30f8f8cSSatish Balay   PetscFunctionBegin;
111929bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1120a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1121a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1122a30f8f8cSSatish Balay }
1123a30f8f8cSSatish Balay 
11244a2ae208SSatish Balay #undef __FUNCT__
11254a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1126dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1127a30f8f8cSSatish Balay {
1128a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1129dfbe8321SBarry Smith   PetscErrorCode ierr;
1130a30f8f8cSSatish Balay 
1131a30f8f8cSSatish Balay   PetscFunctionBegin;
1132a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1133a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1134a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1135a30f8f8cSSatish Balay }
1136a30f8f8cSSatish Balay 
11374a2ae208SSatish Balay #undef __FUNCT__
11384a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11391302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1140a30f8f8cSSatish Balay {
1141a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
114287828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
11436849ba73SBarry Smith   PetscErrorCode ierr;
1144521d7252SBarry Smith   PetscInt       bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
11451302d50aSBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
11461302d50aSBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstart;
1147a30f8f8cSSatish Balay 
1148a30f8f8cSSatish Balay   PetscFunctionBegin;
114929bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1150a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1151a30f8f8cSSatish Balay 
1152a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1153a30f8f8cSSatish Balay     /*
1154a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1155a30f8f8cSSatish Balay     */
1156a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1157a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
11581302d50aSBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1159a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1160a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1161a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1162a30f8f8cSSatish Balay     }
11631302d50aSBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
11641302d50aSBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1165a30f8f8cSSatish Balay   }
1166a30f8f8cSSatish Balay 
116729bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1168a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1169a30f8f8cSSatish Balay 
1170a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1171a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1172a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1173a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1175a30f8f8cSSatish Balay   nztot = nzA + nzB;
1176a30f8f8cSSatish Balay 
1177a30f8f8cSSatish Balay   cmap  = mat->garray;
1178a30f8f8cSSatish Balay   if (v  || idx) {
1179a30f8f8cSSatish Balay     if (nztot) {
1180a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
11811302d50aSBarry Smith       PetscInt imark = -1;
1182a30f8f8cSSatish Balay       if (v) {
1183a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1184a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1185a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1186a30f8f8cSSatish Balay           else break;
1187a30f8f8cSSatish Balay         }
1188a30f8f8cSSatish Balay         imark = i;
1189a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1190a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1191a30f8f8cSSatish Balay       }
1192a30f8f8cSSatish Balay       if (idx) {
1193a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1194a30f8f8cSSatish Balay         if (imark > -1) {
1195a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1196a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1197a30f8f8cSSatish Balay           }
1198a30f8f8cSSatish Balay         } else {
1199a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1200a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1201a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1202a30f8f8cSSatish Balay             else break;
1203a30f8f8cSSatish Balay           }
1204a30f8f8cSSatish Balay           imark = i;
1205a30f8f8cSSatish Balay         }
1206a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1207a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1208a30f8f8cSSatish Balay       }
1209a30f8f8cSSatish Balay     } else {
1210a30f8f8cSSatish Balay       if (idx) *idx = 0;
1211a30f8f8cSSatish Balay       if (v)   *v   = 0;
1212a30f8f8cSSatish Balay     }
1213a30f8f8cSSatish Balay   }
1214a30f8f8cSSatish Balay   *nz = nztot;
1215a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1216a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1217a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1218a30f8f8cSSatish Balay }
1219a30f8f8cSSatish Balay 
12204a2ae208SSatish Balay #undef __FUNCT__
12214a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12221302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1223a30f8f8cSSatish Balay {
1224a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1225a30f8f8cSSatish Balay 
1226a30f8f8cSSatish Balay   PetscFunctionBegin;
1227a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
122829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1229a30f8f8cSSatish Balay   }
1230a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1231a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1232a30f8f8cSSatish Balay }
1233a30f8f8cSSatish Balay 
12344a2ae208SSatish Balay #undef __FUNCT__
12354a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1236dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1237a30f8f8cSSatish Balay {
1238a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1239dfbe8321SBarry Smith   PetscErrorCode ierr;
1240a30f8f8cSSatish Balay 
1241a30f8f8cSSatish Balay   PetscFunctionBegin;
1242a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1243a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1244a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1245a30f8f8cSSatish Balay }
1246a30f8f8cSSatish Balay 
12474a2ae208SSatish Balay #undef __FUNCT__
12484a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1249dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1250a30f8f8cSSatish Balay {
1251a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1252a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1253dfbe8321SBarry Smith   PetscErrorCode ierr;
1254a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1255a30f8f8cSSatish Balay 
1256a30f8f8cSSatish Balay   PetscFunctionBegin;
1257521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1258a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1259a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1260a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1261a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1262a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1263a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1264a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1265a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1266a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1267a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1268a30f8f8cSSatish Balay     info->memory       = isend[3];
1269a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1270a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1271d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1272a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1273a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1274a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1275a30f8f8cSSatish Balay     info->memory       = irecv[3];
1276a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1277a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1278d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1279a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1280a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1281a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1282a30f8f8cSSatish Balay     info->memory       = irecv[3];
1283a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1284a30f8f8cSSatish Balay   } else {
128577431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1286a30f8f8cSSatish Balay   }
1287f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1288f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1289f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1290f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1291a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1292a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1293a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1294a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1295a30f8f8cSSatish Balay }
1296a30f8f8cSSatish Balay 
12974a2ae208SSatish Balay #undef __FUNCT__
12984a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1299dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1300a30f8f8cSSatish Balay {
1301a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1302dfbe8321SBarry Smith   PetscErrorCode ierr;
1303a30f8f8cSSatish Balay 
1304a30f8f8cSSatish Balay   PetscFunctionBegin;
1305e98b92d7SKris Buschelman   switch (op) {
1306e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1307e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1308e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1309e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1310e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1311e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1312e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1313a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1314a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1315e98b92d7SKris Buschelman     break;
1316e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1317a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1318a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1319a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1320e98b92d7SKris Buschelman     break;
1321e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1322e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1323e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1324b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1325e98b92d7SKris Buschelman     break;
1326e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1327a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1328a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1329a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1330e98b92d7SKris Buschelman     break;
1331e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1332a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1333e98b92d7SKris Buschelman     break;
1334e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
133529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1336e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1337a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1338e98b92d7SKris Buschelman     break;
13399a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
13409a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
13419a4540c5SBarry Smith   case MAT_HERMITIAN:
13429a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
134377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
134477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13459a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
13469a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
13479a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
134877e54ba9SKris Buschelman     break;
1349e98b92d7SKris Buschelman   default:
135029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1351a30f8f8cSSatish Balay   }
1352a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1353a30f8f8cSSatish Balay }
1354a30f8f8cSSatish Balay 
13554a2ae208SSatish Balay #undef __FUNCT__
13568115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1357dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1358a30f8f8cSSatish Balay {
1359dfbe8321SBarry Smith   PetscErrorCode ierr;
1360a30f8f8cSSatish Balay   PetscFunctionBegin;
1361999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13628115998fSBarry Smith   PetscFunctionReturn(0);
1363a30f8f8cSSatish Balay }
1364a30f8f8cSSatish Balay 
13654a2ae208SSatish Balay #undef __FUNCT__
13664a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1367dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1368a30f8f8cSSatish Balay {
1369a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1370a30f8f8cSSatish Balay   Mat            a = baij->A,b = baij->B;
1371dfbe8321SBarry Smith   PetscErrorCode ierr;
13721302d50aSBarry Smith   PetscInt       s1,s2,s3;
1373a30f8f8cSSatish Balay 
1374a30f8f8cSSatish Balay   PetscFunctionBegin;
1375a30f8f8cSSatish Balay   if (ll != rr) {
137629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1377a30f8f8cSSatish Balay   }
1378a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1379a30f8f8cSSatish Balay   if (rr) {
1380a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
138129bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1382a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1383a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1384a30f8f8cSSatish Balay     /*} if (ll) { */
1385a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
138629bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1387a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1388a30f8f8cSSatish Balay     /* } */
1389a30f8f8cSSatish Balay   /* scale  the diagonal block */
1390a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1391a30f8f8cSSatish Balay 
1392a30f8f8cSSatish Balay   /* if (rr) { */
1393a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1394a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1395a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1396a30f8f8cSSatish Balay   }
1397a30f8f8cSSatish Balay 
1398a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1399a30f8f8cSSatish Balay }
1400a30f8f8cSSatish Balay 
14014a2ae208SSatish Balay #undef __FUNCT__
14024a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
1403dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag)
1404a30f8f8cSSatish Balay {
1405a30f8f8cSSatish Balay   PetscFunctionBegin;
1406c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
1407a30f8f8cSSatish Balay }
1408a30f8f8cSSatish Balay 
14094a2ae208SSatish Balay #undef __FUNCT__
14104a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1411dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1412a30f8f8cSSatish Balay {
1413a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1414a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
14151302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1416dfbe8321SBarry Smith   PetscErrorCode    ierr;
1417a30f8f8cSSatish Balay 
1418a30f8f8cSSatish Balay   PetscFunctionBegin;
1419a30f8f8cSSatish Balay   if (!a->rank) {
1420a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1421a30f8f8cSSatish Balay   }
14221302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1423a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1424a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1425a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1426a30f8f8cSSatish Balay }
1427a30f8f8cSSatish Balay 
14284a2ae208SSatish Balay #undef __FUNCT__
14294a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1430dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1431a30f8f8cSSatish Balay {
1432f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1433dfbe8321SBarry Smith   PetscErrorCode ierr;
1434a30f8f8cSSatish Balay 
1435a30f8f8cSSatish Balay   PetscFunctionBegin;
1436a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1437a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1438a30f8f8cSSatish Balay }
1439a30f8f8cSSatish Balay 
14406849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1441a30f8f8cSSatish Balay 
14424a2ae208SSatish Balay #undef __FUNCT__
14434a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1444dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1445a30f8f8cSSatish Balay {
1446a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1447a30f8f8cSSatish Balay   Mat            a,b,c,d;
1448a30f8f8cSSatish Balay   PetscTruth     flg;
1449dfbe8321SBarry Smith   PetscErrorCode ierr;
1450a30f8f8cSSatish Balay 
1451a30f8f8cSSatish Balay   PetscFunctionBegin;
1452a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1453a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1454a30f8f8cSSatish Balay 
1455a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1456a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1457a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1458a30f8f8cSSatish Balay   }
1459a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1460a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1461a30f8f8cSSatish Balay }
1462a30f8f8cSSatish Balay 
14634a2ae208SSatish Balay #undef __FUNCT__
14644a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1465dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1466273d9f13SBarry Smith {
1467dfbe8321SBarry Smith   PetscErrorCode ierr;
1468273d9f13SBarry Smith 
1469273d9f13SBarry Smith   PetscFunctionBegin;
1470273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1471273d9f13SBarry Smith   PetscFunctionReturn(0);
1472273d9f13SBarry Smith }
1473a5e6ed63SBarry Smith 
1474a5e6ed63SBarry Smith #undef __FUNCT__
1475a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14761302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1477a5e6ed63SBarry Smith {
14786849ba73SBarry Smith   PetscErrorCode ierr;
14791302d50aSBarry Smith   PetscInt       i;
1480a5e6ed63SBarry Smith   PetscTruth     flg;
1481a5e6ed63SBarry Smith 
14826849ba73SBarry Smith   PetscFunctionBegin;
1483a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1484a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1485a5e6ed63SBarry Smith     if (!flg) {
14861302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1487a5e6ed63SBarry Smith     }
1488a5e6ed63SBarry Smith   }
1489a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1490a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1491a5e6ed63SBarry Smith }
1492a5e6ed63SBarry Smith 
1493a5e6ed63SBarry Smith 
1494a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1495a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1496a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1497a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1498a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1499a9d4b620SHong Zhang        MatMult_MPISBAIJ,
150097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1501a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1502a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        0,
150697304618SKris Buschelman /*10*/ 0,
1507a30f8f8cSSatish Balay        0,
1508a30f8f8cSSatish Balay        0,
15092798e883SHong Zhang        MatRelax_MPISBAIJ,
1510a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
151197304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1512a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1513a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1514a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1515a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
151697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1517a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1518a30f8f8cSSatish Balay        0,
1519a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1520a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
152197304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ,
1522a30f8f8cSSatish Balay        0,
1523a30f8f8cSSatish Balay        0,
1524a30f8f8cSSatish Balay        0,
1525a30f8f8cSSatish Balay        0,
152697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1527b5df2d14SHong Zhang        0,
1528a30f8f8cSSatish Balay        0,
1529a30f8f8cSSatish Balay        0,
1530a30f8f8cSSatish Balay        0,
153197304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1532a30f8f8cSSatish Balay        0,
1533a30f8f8cSSatish Balay        0,
1534a30f8f8cSSatish Balay        0,
1535a30f8f8cSSatish Balay        0,
153697304618SKris Buschelman /*40*/ 0,
1537a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1538d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1539a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1540a30f8f8cSSatish Balay        0,
154197304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1542a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1543a30f8f8cSSatish Balay        0,
1544a30f8f8cSSatish Balay        0,
1545a30f8f8cSSatish Balay        0,
1546521d7252SBarry Smith /*50*/ 0,
1547a30f8f8cSSatish Balay        0,
1548a30f8f8cSSatish Balay        0,
1549a30f8f8cSSatish Balay        0,
1550a30f8f8cSSatish Balay        0,
155197304618SKris Buschelman /*55*/ 0,
1552a30f8f8cSSatish Balay        0,
1553a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1554a30f8f8cSSatish Balay        0,
1555a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
155697304618SKris Buschelman /*60*/ 0,
1557a30f8f8cSSatish Balay        0,
1558a30f8f8cSSatish Balay        0,
15598a124369SBarry Smith        MatGetPetscMaps_Petsc,
156024d5174aSHong Zhang        0,
156197304618SKris Buschelman /*65*/ 0,
156224d5174aSHong Zhang        0,
156324d5174aSHong Zhang        0,
156424d5174aSHong Zhang        0,
156524d5174aSHong Zhang        0,
156697304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
156724d5174aSHong Zhang        0,
156897304618SKris Buschelman        0,
156997304618SKris Buschelman        0,
157097304618SKris Buschelman        0,
157197304618SKris Buschelman /*75*/ 0,
157297304618SKris Buschelman        0,
157397304618SKris Buschelman        0,
157497304618SKris Buschelman        0,
157597304618SKris Buschelman        0,
157697304618SKris Buschelman /*80*/ 0,
157797304618SKris Buschelman        0,
157897304618SKris Buschelman        0,
157997304618SKris Buschelman        0,
1580865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1581865e5f61SKris Buschelman /*85*/ 0,
1582865e5f61SKris Buschelman        0,
1583865e5f61SKris Buschelman        0,
1584865e5f61SKris Buschelman        0,
1585865e5f61SKris Buschelman        0,
1586865e5f61SKris Buschelman /*90*/ 0,
1587865e5f61SKris Buschelman        0,
1588865e5f61SKris Buschelman        0,
1589865e5f61SKris Buschelman        0,
1590865e5f61SKris Buschelman        0,
1591865e5f61SKris Buschelman /*95*/ 0,
1592865e5f61SKris Buschelman        0,
1593865e5f61SKris Buschelman        0,
1594865e5f61SKris Buschelman        0};
1595a30f8f8cSSatish Balay 
1596a30f8f8cSSatish Balay 
1597a30f8f8cSSatish Balay EXTERN_C_BEGIN
15984a2ae208SSatish Balay #undef __FUNCT__
15994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1600dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1601a30f8f8cSSatish Balay {
1602a30f8f8cSSatish Balay   PetscFunctionBegin;
1603a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1604a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1605a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1606a30f8f8cSSatish Balay }
1607a30f8f8cSSatish Balay EXTERN_C_END
1608a30f8f8cSSatish Balay 
1609273d9f13SBarry Smith EXTERN_C_BEGIN
16104a2ae208SSatish Balay #undef __FUNCT__
1611a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
16121302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1613a23d5eceSKris Buschelman {
1614a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1615dfbe8321SBarry Smith   PetscErrorCode ierr;
16161302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1617a23d5eceSKris Buschelman 
1618a23d5eceSKris Buschelman   PetscFunctionBegin;
1619a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1620a23d5eceSKris Buschelman 
1621a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1622a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1623a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
162477431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
162577431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1626a23d5eceSKris Buschelman   if (d_nnz) {
1627a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
162877431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1629a23d5eceSKris Buschelman     }
1630a23d5eceSKris Buschelman   }
1631a23d5eceSKris Buschelman   if (o_nnz) {
1632a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
163377431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1634a23d5eceSKris Buschelman     }
1635a23d5eceSKris Buschelman   }
1636a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1637a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1638a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1639a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1640a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1641a23d5eceSKris Buschelman 
1642a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1643a23d5eceSKris Buschelman   mbs = B->m/bs;
1644a23d5eceSKris Buschelman   Mbs = B->M/bs;
1645a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
164677431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1647a23d5eceSKris Buschelman   }
1648a23d5eceSKris Buschelman 
1649521d7252SBarry Smith   B->bs  = bs;
1650a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1651a23d5eceSKris Buschelman   b->mbs = mbs;
1652a23d5eceSKris Buschelman   b->nbs = mbs;
1653a23d5eceSKris Buschelman   b->Mbs = Mbs;
1654a23d5eceSKris Buschelman   b->Nbs = Mbs;
1655a23d5eceSKris Buschelman 
1656*a7cc72afSBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
1657a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1658a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1659a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1660a23d5eceSKris Buschelman   }
1661a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1662a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1663a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1664a23d5eceSKris Buschelman   b->cend      = b->rend;
1665a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1666a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1667a23d5eceSKris Buschelman   }
1668a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1669a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1670a23d5eceSKris Buschelman 
1671a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1672a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1673a23d5eceSKris Buschelman 
16749c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr);
16759c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1676c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
16779c097c71SKris Buschelman   PetscLogObjectParent(B,b->A);
16789c097c71SKris Buschelman 
16799c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr);
16804aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1681589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
16829c097c71SKris Buschelman   PetscLogObjectParent(B,b->B);
1683a23d5eceSKris Buschelman 
1684a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1685a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1686a23d5eceSKris Buschelman 
1687a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1688a23d5eceSKris Buschelman }
1689a23d5eceSKris Buschelman EXTERN_C_END
1690a23d5eceSKris Buschelman 
16910bad9183SKris Buschelman /*MC
1692fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16930bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16940bad9183SKris Buschelman 
16950bad9183SKris Buschelman    Options Database Keys:
16960bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16970bad9183SKris Buschelman 
16980bad9183SKris Buschelman   Level: beginner
16990bad9183SKris Buschelman 
17000bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17010bad9183SKris Buschelman M*/
17020bad9183SKris Buschelman 
1703a23d5eceSKris Buschelman EXTERN_C_BEGIN
1704a23d5eceSKris Buschelman #undef __FUNCT__
17054a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1706dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1707b5df2d14SHong Zhang {
1708b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1709dfbe8321SBarry Smith   PetscErrorCode ierr;
1710b5df2d14SHong Zhang   PetscTruth     flg;
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang   PetscFunctionBegin;
1713b5df2d14SHong Zhang 
1714b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1715b0a32e0cSBarry Smith   B->data = (void*)b;
1716b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1717b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1718b5df2d14SHong Zhang 
1719b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1720b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1721b5df2d14SHong Zhang   B->mapping    = 0;
1722b5df2d14SHong Zhang   B->factor     = 0;
1723b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1724b5df2d14SHong Zhang 
1725b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1726b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1727b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang   /* build local table of row and column ownerships */
17301302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1731273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1732273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
17331302d50aSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1734b5df2d14SHong Zhang 
1735b5df2d14SHong Zhang   /* build cache for off array entries formed */
1736b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1737b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1738b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1739b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1740b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1741b5df2d14SHong Zhang 
1742f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1743b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
174464a35ccbSBarry Smith   b->setvalueslen     = 0;
1745b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1746b5df2d14SHong Zhang #endif
1747b5df2d14SHong Zhang 
1748b5df2d14SHong Zhang   /* stuff used in block assembly */
1749b5df2d14SHong Zhang   b->barray       = 0;
1750b5df2d14SHong Zhang 
1751b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1752b5df2d14SHong Zhang   b->lvec         = 0;
1753b5df2d14SHong Zhang   b->Mvctx        = 0;
175440781036SHong Zhang   b->slvec0       = 0;
175540781036SHong Zhang   b->slvec0b      = 0;
175640781036SHong Zhang   b->slvec1       = 0;
175740781036SHong Zhang   b->slvec1a      = 0;
175840781036SHong Zhang   b->slvec1b      = 0;
175940781036SHong Zhang   b->sMvctx       = 0;
1760b5df2d14SHong Zhang 
1761b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1762b5df2d14SHong Zhang   b->rowindices   = 0;
1763b5df2d14SHong Zhang   b->rowvalues    = 0;
1764b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1765b5df2d14SHong Zhang 
1766b5df2d14SHong Zhang   /* hash table stuff */
1767b5df2d14SHong Zhang   b->ht           = 0;
1768b5df2d14SHong Zhang   b->hd           = 0;
1769b5df2d14SHong Zhang   b->ht_size      = 0;
1770b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1771b5df2d14SHong Zhang   b->ht_fact      = 0;
1772b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1773b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1774b5df2d14SHong Zhang 
1775e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1776b5df2d14SHong Zhang   if (flg) {
1777f6275e2eSBarry Smith     PetscReal fact = 1.39;
1778b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1779e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1780b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1781b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1782b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1783b5df2d14SHong Zhang   }
1784b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1785b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1786b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1787b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1788b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1789b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1790b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1791b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1792b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1793a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1794a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1795a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
179623ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
179723ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
179823ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
179923ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1800b5df2d14SHong Zhang   PetscFunctionReturn(0);
1801b5df2d14SHong Zhang }
1802273d9f13SBarry Smith EXTERN_C_END
1803b5df2d14SHong Zhang 
1804209238afSKris Buschelman /*MC
1805002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1806209238afSKris Buschelman 
1807209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1808209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1809209238afSKris Buschelman 
1810209238afSKris Buschelman    Options Database Keys:
1811209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1812209238afSKris Buschelman 
1813209238afSKris Buschelman   Level: beginner
1814209238afSKris Buschelman 
1815209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1816209238afSKris Buschelman M*/
1817209238afSKris Buschelman 
1818209238afSKris Buschelman EXTERN_C_BEGIN
1819209238afSKris Buschelman #undef __FUNCT__
1820209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1821dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A)
1822dfbe8321SBarry Smith {
18236849ba73SBarry Smith   PetscErrorCode ierr;
18241302d50aSBarry Smith   PetscMPIInt    size;
1825209238afSKris Buschelman 
1826209238afSKris Buschelman   PetscFunctionBegin;
1827209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1828209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1829209238afSKris Buschelman   if (size == 1) {
1830209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1831209238afSKris Buschelman   } else {
1832209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1833209238afSKris Buschelman   }
1834209238afSKris Buschelman   PetscFunctionReturn(0);
1835209238afSKris Buschelman }
1836209238afSKris Buschelman EXTERN_C_END
1837209238afSKris Buschelman 
18384a2ae208SSatish Balay #undef __FUNCT__
18394a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1840b5df2d14SHong Zhang /*@C
1841b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1842b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1843b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1844b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1845b5df2d14SHong Zhang 
1846b5df2d14SHong Zhang    Collective on Mat
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang    Input Parameters:
1849b5df2d14SHong Zhang +  A - the matrix
1850b5df2d14SHong Zhang .  bs   - size of blockk
1851b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1852b5df2d14SHong Zhang            submatrix  (same for all local rows)
1853b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18546d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18556d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18566d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1857b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1858b5df2d14SHong Zhang            submatrix (same for all local rows).
1859b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1860b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1861b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1862b5df2d14SHong Zhang 
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang    Options Database Keys:
1865b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1866b5df2d14SHong Zhang                      block calculations (much slower)
1867b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1868b5df2d14SHong Zhang 
1869b5df2d14SHong Zhang    Notes:
1870b5df2d14SHong Zhang 
1871b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1872b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1873b5df2d14SHong Zhang 
1874b5df2d14SHong Zhang    Storage Information:
1875b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1876b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1877b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1878b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1879b5df2d14SHong Zhang 
1880b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1881b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1882b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1883b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1884b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1885b5df2d14SHong Zhang 
1886b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1887b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1888b5df2d14SHong Zhang 
1889b5df2d14SHong Zhang .vb
1890b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1891b5df2d14SHong Zhang           -------------------
1892b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1893b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1894b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1895b5df2d14SHong Zhang           -------------------
1896b5df2d14SHong Zhang .ve
1897b5df2d14SHong Zhang 
1898b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1899b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19006d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19016d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1902b5df2d14SHong Zhang 
19036d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19046d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1905b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1906b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1907b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1908b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1909b5df2d14SHong Zhang    matrices.
1910b5df2d14SHong Zhang 
1911b5df2d14SHong Zhang    Level: intermediate
1912b5df2d14SHong Zhang 
1913b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1914b5df2d14SHong Zhang 
1915b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1916b5df2d14SHong Zhang @*/
19171302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1918b5df2d14SHong Zhang {
19191302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1920b5df2d14SHong Zhang 
1921b5df2d14SHong Zhang   PetscFunctionBegin;
1922a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1923a23d5eceSKris Buschelman   if (f) {
1924a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1925b5df2d14SHong Zhang   }
1926b5df2d14SHong Zhang   PetscFunctionReturn(0);
1927b5df2d14SHong Zhang }
1928b5df2d14SHong Zhang 
19294a2ae208SSatish Balay #undef __FUNCT__
19304a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1931a30f8f8cSSatish Balay /*@C
1932a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1933a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1934a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1935a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1936a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1937a30f8f8cSSatish Balay 
1938a30f8f8cSSatish Balay    Collective on MPI_Comm
1939a30f8f8cSSatish Balay 
1940a30f8f8cSSatish Balay    Input Parameters:
1941a30f8f8cSSatish Balay +  comm - MPI communicator
1942a30f8f8cSSatish Balay .  bs   - size of blockk
1943a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1944a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1945a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1946a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1947a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1948a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1949a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1950a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1951a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1952a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1953a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19546d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19556d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19566d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1957a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1958a30f8f8cSSatish Balay            submatrix (same for all local rows).
1959a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1960a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1961a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1962a30f8f8cSSatish Balay 
1963a30f8f8cSSatish Balay    Output Parameter:
1964a30f8f8cSSatish Balay .  A - the matrix
1965a30f8f8cSSatish Balay 
1966a30f8f8cSSatish Balay    Options Database Keys:
1967a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1968a30f8f8cSSatish Balay                      block calculations (much slower)
1969a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1970a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1971a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1972a30f8f8cSSatish Balay 
1973a30f8f8cSSatish Balay    Notes:
1974a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1975a30f8f8cSSatish Balay    (possibly both).
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1978a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1979a30f8f8cSSatish Balay 
1980a30f8f8cSSatish Balay    Storage Information:
1981a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1982a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1983a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1984a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1985a30f8f8cSSatish Balay 
1986a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1987a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1988a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1989a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1990a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1991a30f8f8cSSatish Balay 
1992a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1993a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay .vb
1996a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1997a30f8f8cSSatish Balay           -------------------
1998a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1999a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2000a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2001a30f8f8cSSatish Balay           -------------------
2002a30f8f8cSSatish Balay .ve
2003a30f8f8cSSatish Balay 
2004a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2005a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20066d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20076d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2008a30f8f8cSSatish Balay 
20096d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20106d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2011a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2012a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2013a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2014a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2015a30f8f8cSSatish Balay    matrices.
2016a30f8f8cSSatish Balay 
2017a30f8f8cSSatish Balay    Level: intermediate
2018a30f8f8cSSatish Balay 
2019a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2020a30f8f8cSSatish Balay 
2021a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2022a30f8f8cSSatish Balay @*/
2023a30f8f8cSSatish Balay 
20241302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2025a30f8f8cSSatish Balay {
20266849ba73SBarry Smith   PetscErrorCode ierr;
20271302d50aSBarry Smith   PetscMPIInt    size;
2028a30f8f8cSSatish Balay 
2029a30f8f8cSSatish Balay   PetscFunctionBegin;
2030b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2031273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2032273d9f13SBarry Smith   if (size > 1) {
2033b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2034b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2035273d9f13SBarry Smith   } else {
2036273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2037273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2038273d9f13SBarry Smith   }
2039a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2040a30f8f8cSSatish Balay }
2041a30f8f8cSSatish Balay 
2042a30f8f8cSSatish Balay 
20434a2ae208SSatish Balay #undef __FUNCT__
20444a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20456849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2046a30f8f8cSSatish Balay {
2047a30f8f8cSSatish Balay   Mat            mat;
2048a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2049dfbe8321SBarry Smith   PetscErrorCode ierr;
2050521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
2051387bc808SHong Zhang   PetscScalar    *array;
2052a30f8f8cSSatish Balay 
2053a30f8f8cSSatish Balay   PetscFunctionBegin;
2054a30f8f8cSSatish Balay   *newmat       = 0;
2055b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2056be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20571d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2058e1b6402fSHong Zhang 
205982327fa8SHong Zhang   mat->factor       = matin->factor;
2060273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206182327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20627fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20637fff6886SHong Zhang 
2064b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2065521d7252SBarry Smith   mat->bs  = matin->bs;
2066a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2067a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2068a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2069a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2070a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2071a30f8f8cSSatish Balay 
2072a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
2073a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
2074a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
2075a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
2076a30f8f8cSSatish Balay   a->size         = oldmat->size;
2077a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2078a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2079a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2080a30f8f8cSSatish Balay   a->rowindices   = 0;
2081a30f8f8cSSatish Balay   a->rowvalues    = 0;
2082a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2083a30f8f8cSSatish Balay   a->barray       = 0;
2084a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
2085a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
2086a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
2087a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
2088a30f8f8cSSatish Balay 
2089a30f8f8cSSatish Balay   /* hash table stuff */
2090a30f8f8cSSatish Balay   a->ht           = 0;
2091a30f8f8cSSatish Balay   a->hd           = 0;
2092a30f8f8cSSatish Balay   a->ht_size      = 0;
2093a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2094a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2095a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2096a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2097a30f8f8cSSatish Balay 
20981302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2099a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2100521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   if (oldmat->colmap) {
2102a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2103a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2104a30f8f8cSSatish Balay #else
21051302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
21061302d50aSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));
21071302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2108a30f8f8cSSatish Balay #endif
2109a30f8f8cSSatish Balay   } else a->colmap = 0;
2110387bc808SHong Zhang 
2111a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21121302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
21131302d50aSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(PetscInt));
21141302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2115a30f8f8cSSatish Balay   } else a->garray = 0;
2116a30f8f8cSSatish Balay 
2117a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2118b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2119a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2120b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
212182327fa8SHong Zhang 
212282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
2123387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
212482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
2125387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
2126387bc808SHong Zhang 
2127387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21281ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2129387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2130387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21311ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21321ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2133387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21341ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
2135387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
2136387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
2137387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0b);
2138387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1a);
2139387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1b);
2140387bc808SHong Zhang 
2141387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2142387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2143387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
2144387bc808SHong Zhang   PetscLogObjectParent(mat,a->sMvctx);
214582327fa8SHong Zhang 
2146a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2147b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2148a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2149b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2150b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay   *newmat = mat;
2152a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2153a30f8f8cSSatish Balay }
2154a30f8f8cSSatish Balay 
2155a30f8f8cSSatish Balay #include "petscsys.h"
2156a30f8f8cSSatish Balay 
21574a2ae208SSatish Balay #undef __FUNCT__
21584a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2159dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
2160a30f8f8cSSatish Balay {
2161a30f8f8cSSatish Balay   Mat            A;
21626849ba73SBarry Smith   PetscErrorCode ierr;
216313f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216487828ca2SBarry Smith   PetscScalar    *vals,*buf;
2165a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2166a30f8f8cSSatish Balay   MPI_Status     status;
216713f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners;
216813f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
216913f74950SBarry Smith   PetscInt       *locrowlens,*procsnz = 0,jj,*mycols,*ibuf;
21701302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21711302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21721302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
217313f74950SBarry Smith   int            fd;
2174a30f8f8cSSatish Balay 
2175a30f8f8cSSatish Balay   PetscFunctionBegin;
2176b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay 
2178a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay   if (!rank) {
2181b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2183552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2184a30f8f8cSSatish Balay     if (header[3] < 0) {
218529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2186a30f8f8cSSatish Balay     }
2187a30f8f8cSSatish Balay   }
2188a30f8f8cSSatish Balay 
2189*a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2190a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2191a30f8f8cSSatish Balay 
219229bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2193a30f8f8cSSatish Balay 
2194a30f8f8cSSatish Balay   /*
2195a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2196a30f8f8cSSatish Balay      divisible by the blocksize
2197a30f8f8cSSatish Balay   */
2198a30f8f8cSSatish Balay   Mbs        = M/bs;
2199a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2200a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2201a30f8f8cSSatish Balay   else                  Mbs++;
2202a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2203b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2204a30f8f8cSSatish Balay   }
2205a30f8f8cSSatish Balay 
2206a30f8f8cSSatish Balay   /* determine ownership of all rows */
2207a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2208a30f8f8cSSatish Balay   m          = mbs*bs;
2209*a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2211a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay   rowners[0] = 0;
2213a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2214a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2215a30f8f8cSSatish Balay   rstart = rowners[rank];
2216a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2217a30f8f8cSSatish Balay 
2218a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22191302d50aSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay   if (!rank) {
22211302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2224*a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2226*a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   } else {
2229*a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay   }
2231a30f8f8cSSatish Balay 
22320222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2233a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22341302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22351302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2236a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2237a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2238a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2239a30f8f8cSSatish Balay       }
2240a30f8f8cSSatish Balay     }
2241a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2242a30f8f8cSSatish Balay 
2243a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2244a30f8f8cSSatish Balay     maxnz = 0;
2245a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2246a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2247a30f8f8cSSatish Balay     }
22481302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay 
2250a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2251a30f8f8cSSatish Balay     nz     = procsnz[0];
22521302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2253a30f8f8cSSatish Balay     mycols = ibuf;
2254a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2255a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2257a30f8f8cSSatish Balay 
2258a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2259a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2260a30f8f8cSSatish Balay       nz   = procsnz[i];
2261a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2262*a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2263a30f8f8cSSatish Balay     }
2264a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2265a30f8f8cSSatish Balay     if (size != 1) {
2266a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2267a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2269*a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2270a30f8f8cSSatish Balay     }
2271a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22720222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2273a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2274a30f8f8cSSatish Balay     nz = 0;
2275a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2276a30f8f8cSSatish Balay       nz += locrowlens[i];
2277a30f8f8cSSatish Balay     }
22781302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2279a30f8f8cSSatish Balay     mycols = ibuf;
2280a30f8f8cSSatish Balay     /* receive message of column indices*/
2281*a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2282*a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
228329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2284a30f8f8cSSatish Balay   }
2285a30f8f8cSSatish Balay 
2286a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22871302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2288a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22891302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22901302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2291a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2292a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2293a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2294a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2295a30f8f8cSSatish Balay     dcount  = 0;
2296a30f8f8cSSatish Balay     odcount = 0;
2297a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2298a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2299a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23000222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2301a30f8f8cSSatish Balay         if (!mask[tmp]) {
2302a30f8f8cSSatish Balay           mask[tmp] = 1;
23030222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23040222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2305a30f8f8cSSatish Balay         }
2306a30f8f8cSSatish Balay       }
2307a30f8f8cSSatish Balay       rowcount++;
2308a30f8f8cSSatish Balay     }
2309a30f8f8cSSatish Balay 
23100222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23110222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2312a30f8f8cSSatish Balay 
2313a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2314a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2315a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2316a30f8f8cSSatish Balay   }
2317a30f8f8cSSatish Balay 
2318a30f8f8cSSatish Balay   /* create our matrix */
231922191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
232022191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232122191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2322273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2323a30f8f8cSSatish Balay 
2324a30f8f8cSSatish Balay   if (!rank) {
232587828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2326a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2327a30f8f8cSSatish Balay     nz = procsnz[0];
2328a30f8f8cSSatish Balay     vals = buf;
2329a30f8f8cSSatish Balay     mycols = ibuf;
2330a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2331a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2332a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2333a30f8f8cSSatish Balay 
2334a30f8f8cSSatish Balay     /* insert into matrix */
2335a30f8f8cSSatish Balay     jj      = rstart*bs;
2336a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23377e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2338a30f8f8cSSatish Balay       mycols += locrowlens[i];
2339a30f8f8cSSatish Balay       vals   += locrowlens[i];
2340a30f8f8cSSatish Balay       jj++;
2341a30f8f8cSSatish Balay     }
23427e06b45fSHong Zhang 
2343a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2344a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2345a30f8f8cSSatish Balay       nz   = procsnz[i];
2346a30f8f8cSSatish Balay       vals = buf;
2347a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2348a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2349a30f8f8cSSatish Balay     }
2350a30f8f8cSSatish Balay     /* the last proc */
2351a30f8f8cSSatish Balay     if (size != 1){
2352a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2353a30f8f8cSSatish Balay       vals = buf;
2354a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2355a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2356a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2357a30f8f8cSSatish Balay     }
2358a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23597e06b45fSHong Zhang 
2360a30f8f8cSSatish Balay   } else {
2361a30f8f8cSSatish Balay     /* receive numeric values */
236287828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2363a30f8f8cSSatish Balay 
2364a30f8f8cSSatish Balay     /* receive message of values*/
2365a30f8f8cSSatish Balay     vals   = buf;
2366a30f8f8cSSatish Balay     mycols = ibuf;
2367a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2368a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
236929bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2370a30f8f8cSSatish Balay 
2371a30f8f8cSSatish Balay     /* insert into matrix */
2372a30f8f8cSSatish Balay     jj      = rstart*bs;
2373a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2374a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2375a30f8f8cSSatish Balay       mycols += locrowlens[i];
2376a30f8f8cSSatish Balay       vals   += locrowlens[i];
2377a30f8f8cSSatish Balay       jj++;
2378a30f8f8cSSatish Balay     }
2379a30f8f8cSSatish Balay   }
23807e06b45fSHong Zhang 
2381a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2382a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2383a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2384a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2385a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2386a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2387a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2388a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238922191285SKris Buschelman   *newmat = A;
2390a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2391a30f8f8cSSatish Balay }
2392a30f8f8cSSatish Balay 
23934a2ae208SSatish Balay #undef __FUNCT__
23944a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2395a30f8f8cSSatish Balay /*@
2396a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2397a30f8f8cSSatish Balay 
2398a30f8f8cSSatish Balay    Input Parameters:
2399a30f8f8cSSatish Balay .  mat  - the matrix
2400a30f8f8cSSatish Balay .  fact - factor
2401a30f8f8cSSatish Balay 
2402a30f8f8cSSatish Balay    Collective on Mat
2403a30f8f8cSSatish Balay 
2404a30f8f8cSSatish Balay    Level: advanced
2405a30f8f8cSSatish Balay 
2406a30f8f8cSSatish Balay   Notes:
2407a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2408a30f8f8cSSatish Balay 
2409a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2410a30f8f8cSSatish Balay 
2411a30f8f8cSSatish Balay .seealso: MatSetOption()
2412a30f8f8cSSatish Balay @*/
2413dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2414a30f8f8cSSatish Balay {
2415a30f8f8cSSatish Balay   PetscFunctionBegin;
24161302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
241796e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2418a30f8f8cSSatish Balay }
241924d5174aSHong Zhang 
24204a2ae208SSatish Balay #undef __FUNCT__
24214a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2422dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
242324d5174aSHong Zhang {
242424d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2425f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2426ca54ac64SHong Zhang   PetscReal      atmp;
242787828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2428dfbe8321SBarry Smith   PetscErrorCode ierr;
24291302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24301302d50aSBarry Smith   PetscMPIInt    rank,size;
24311302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
243287828ca2SBarry Smith   PetscScalar    *va;
24338a1c53f2SBarry Smith   MatScalar      *ba;
2434f4c0e9e4SHong Zhang   MPI_Status     stat;
243524d5174aSHong Zhang 
243624d5174aSHong Zhang   PetscFunctionBegin;
2437d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24381ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2439f4c0e9e4SHong Zhang 
244056faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
244156faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2442f4c0e9e4SHong Zhang 
2443521d7252SBarry Smith   bs   = A->bs;
2444f4c0e9e4SHong Zhang   mbs  = a->mbs;
2445f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2446f4c0e9e4SHong Zhang   ba   = b->a;
2447f4c0e9e4SHong Zhang   bi   = b->i;
2448f4c0e9e4SHong Zhang   bj   = b->j;
2449f4c0e9e4SHong Zhang 
2450f4c0e9e4SHong Zhang   /* find ownerships */
2451f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2452f4c0e9e4SHong Zhang 
2453f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245482502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2455ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2456f4c0e9e4SHong Zhang 
2457f4c0e9e4SHong Zhang   /* row_max for B */
2458b8475685SHong Zhang   if (rank != size-1){
2459f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2460f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2461f4c0e9e4SHong Zhang       brow  = bs*i;
2462f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2463f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2464f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2465ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246604d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2467f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2468f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2469ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2470ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2471f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2472f4c0e9e4SHong Zhang           }
2473f4c0e9e4SHong Zhang         }
2474f4c0e9e4SHong Zhang         bj++;
2475f4c0e9e4SHong Zhang       }
2476f4c0e9e4SHong Zhang     }
2477f4c0e9e4SHong Zhang 
2478f4c0e9e4SHong Zhang     /* send values to its owners */
2479f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2480f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2481ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
248256faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2483ca54ac64SHong Zhang     }
2484f4c0e9e4SHong Zhang   }
2485f4c0e9e4SHong Zhang 
2486f4c0e9e4SHong Zhang   /* receive values */
2487ca54ac64SHong Zhang   if (rank){
2488f4c0e9e4SHong Zhang     rvalues = work;
2489ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2490f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
249156faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2492f4c0e9e4SHong Zhang       /* process values */
2493f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2494ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2495f4c0e9e4SHong Zhang       }
2496f4c0e9e4SHong Zhang     }
2497ca54ac64SHong Zhang   }
2498f4c0e9e4SHong Zhang 
24991ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2500ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
250124d5174aSHong Zhang   PetscFunctionReturn(0);
250224d5174aSHong Zhang }
25032798e883SHong Zhang 
25042798e883SHong Zhang #undef __FUNCT__
25052798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
25061302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25072798e883SHong Zhang {
25082798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2509dfbe8321SBarry Smith   PetscErrorCode ierr;
2510521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2511ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2512ffe4fb16SHong Zhang   Vec            bb1;
2513ffe4fb16SHong Zhang 
2514ffe4fb16SHong Zhang   PetscFunctionBegin;
251577431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2516ffe4fb16SHong Zhang   if (bs > 1)
2517ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2518ffe4fb16SHong Zhang 
2519ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2520ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2521ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2522ffe4fb16SHong Zhang       its--;
2523ffe4fb16SHong Zhang     }
2524ffe4fb16SHong Zhang 
2525ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2526ffe4fb16SHong Zhang     while (its--){
2527ffe4fb16SHong Zhang 
2528ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2529ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2530ffe4fb16SHong Zhang 
2531ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25321ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25331ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2534ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25351ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2536ffe4fb16SHong Zhang 
2537ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2538ffe4fb16SHong Zhang 
2539ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25401ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25411ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2542ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25431ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2544ffe4fb16SHong Zhang 
2545ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2546ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2547ffe4fb16SHong Zhang 
2548ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25491ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25501ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2551ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2552ffe4fb16SHong Zhang 
2553ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2554ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2555ffe4fb16SHong Zhang 
2556ffe4fb16SHong Zhang       /* local diagonal sweep */
2557ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2558ffe4fb16SHong Zhang     }
2559ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2560ffe4fb16SHong Zhang   } else {
2561ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2562ffe4fb16SHong Zhang   }
2563ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2564ffe4fb16SHong Zhang }
2565ffe4fb16SHong Zhang 
2566ffe4fb16SHong Zhang #undef __FUNCT__
2567ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25681302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2569ffe4fb16SHong Zhang {
2570ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2571dfbe8321SBarry Smith   PetscErrorCode ierr;
2572d05c616dSSatish Balay   PetscScalar    mone=-1.0;
25732798e883SHong Zhang   Vec            lvec1,bb1;
25742798e883SHong Zhang 
25752798e883SHong Zhang   PetscFunctionBegin;
257677431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2577521d7252SBarry Smith   if (matin->bs > 1)
25782798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25792798e883SHong Zhang 
2580c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25812798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2582bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25832798e883SHong Zhang       its--;
25842798e883SHong Zhang     }
25852798e883SHong Zhang 
25862798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25872798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25882798e883SHong Zhang     while (its--){
25892798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25902798e883SHong Zhang 
25912798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25922798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
25932798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
25942798e883SHong Zhang 
25952798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25962798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25972798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25982798e883SHong Zhang 
25992798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
26002798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
26012798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26022798e883SHong Zhang 
26032798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26042798e883SHong Zhang 
2605c14dc6b6SHong Zhang       /* diagonal sweep */
2606bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26072798e883SHong Zhang     }
26082798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26092798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2610c14dc6b6SHong Zhang   } else {
2611c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2612c14dc6b6SHong Zhang   }
26132798e883SHong Zhang   PetscFunctionReturn(0);
26142798e883SHong Zhang }
26152798e883SHong Zhang 
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