1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 10177431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1041302d50aSBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 10777431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 1101302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1121302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 1181302d50aSBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1201302d50aSBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 1361302d50aSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 17777431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1801302d50aSBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 18377431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 1861302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1881302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 1941302d50aSBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 1961302d50aSBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 2121302d50aSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 2381302d50aSBarry Smith PetscInt i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261dfbe8321SBarry Smith PetscErrorCode ierr; 2621302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 263a30f8f8cSSatish Balay MatScalar *vsingle; 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay PetscFunctionBegin; 266a30f8f8cSSatish Balay if (N > b->setvalueslen) { 267a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 269a30f8f8cSSatish Balay b->setvalueslen = N; 270a30f8f8cSSatish Balay } 271a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 272a30f8f8cSSatish Balay for (i=0; i<N; i++) { 273a30f8f8cSSatish Balay vsingle[i] = v[i]; 274a30f8f8cSSatish Balay } 275a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 276a30f8f8cSSatish Balay PetscFunctionReturn(0); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay 2794a2ae208SSatish Balay #undef __FUNCT__ 2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 2811302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 282a30f8f8cSSatish Balay { 283a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 284dfbe8321SBarry Smith PetscErrorCode ierr; 2851302d50aSBarry Smith PetscInt i,N = m*n; 286a30f8f8cSSatish Balay MatScalar *vsingle; 287a30f8f8cSSatish Balay 288a30f8f8cSSatish Balay PetscFunctionBegin; 2891302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 2904d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay 2934a2ae208SSatish Balay #undef __FUNCT__ 2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 2951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 296a30f8f8cSSatish Balay { 297a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 298dfbe8321SBarry Smith PetscErrorCode ierr; 2991302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 300a30f8f8cSSatish Balay MatScalar *vsingle; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay PetscFunctionBegin; 3031302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 3044d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay #endif 307a30f8f8cSSatish Balay 308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 309a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 310a30f8f8cSSatish Balay */ 3114a2ae208SSatish Balay #undef __FUNCT__ 312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 3131302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 314a30f8f8cSSatish Balay { 315a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 316a30f8f8cSSatish Balay MatScalar value; 317b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 318dfbe8321SBarry Smith PetscErrorCode ierr; 3191302d50aSBarry Smith PetscInt i,j,row,col; 3201302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 3211302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 322521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 323a30f8f8cSSatish Balay 324a30f8f8cSSatish Balay /* Some Variables required in the macro */ 325a30f8f8cSSatish Balay Mat A = baij->A; 326a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 3271302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 328a30f8f8cSSatish Balay MatScalar *aa=a->a; 329a30f8f8cSSatish Balay 330a30f8f8cSSatish Balay Mat B = baij->B; 331a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 3321302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 333a30f8f8cSSatish Balay MatScalar *ba=b->a; 334a30f8f8cSSatish Balay 3351302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 3361302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 337a30f8f8cSSatish Balay MatScalar *ap,*bap; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay /* for stash */ 3401302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 341f65c83cfSHong Zhang MatScalar *v_loc=0; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay PetscFunctionBegin; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay if(!baij->donotstash){ 3461302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 34782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 348a30f8f8cSSatish Balay } 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay for (i=0; i<m; i++) { 351a30f8f8cSSatish Balay if (im[i] < 0) continue; 352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 35377431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 354a30f8f8cSSatish Balay #endif 355a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 356a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 357a30f8f8cSSatish Balay for (j=0; j<n; j++) { 358f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 359a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 360a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 361a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 362a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 363a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 364a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 365a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 366a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 36877431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 369a30f8f8cSSatish Balay #endif 370a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 371a30f8f8cSSatish Balay if (mat->was_assembled) { 372a30f8f8cSSatish Balay if (!baij->colmap) { 373653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 374a30f8f8cSSatish Balay } 375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 376a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37771730473SSatish Balay col = col - 1; 378a30f8f8cSSatish Balay #else 37971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 380a30f8f8cSSatish Balay #endif 381a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 382a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 383a30f8f8cSSatish Balay col = in[j]; 384a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 385a30f8f8cSSatish Balay B = baij->B; 386a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 387a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 388a30f8f8cSSatish Balay ba=b->a; 38971730473SSatish Balay } else col += in[j]%bs; 390a30f8f8cSSatish Balay } else col = in[j]; 391a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 392a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 393a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } else { /* off processor entry */ 397a30f8f8cSSatish Balay if (!baij->donotstash) { 398a30f8f8cSSatish Balay n_loc = 0; 399a30f8f8cSSatish Balay for (j=0; j<n; j++){ 400f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 401a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 402a30f8f8cSSatish Balay if (roworiented) { 403a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 404a30f8f8cSSatish Balay } else { 405a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay n_loc++; 408a30f8f8cSSatish Balay } 409a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 410a30f8f8cSSatish Balay } 411a30f8f8cSSatish Balay } 412a30f8f8cSSatish Balay } 413a30f8f8cSSatish Balay 414a30f8f8cSSatish Balay if(!baij->donotstash){ 415a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 4231302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 424a30f8f8cSSatish Balay { 4250880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 426f15d580aSBarry Smith const MatScalar *value; 427f15d580aSBarry Smith MatScalar *barray=baij->barray; 4280880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 429dfbe8321SBarry Smith PetscErrorCode ierr; 4301302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 4311302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 432521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 4330880e062SHong Zhang 434a30f8f8cSSatish Balay PetscFunctionBegin; 4350880e062SHong Zhang if(!barray) { 4360880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4370880e062SHong Zhang baij->barray = barray; 4380880e062SHong Zhang } 4390880e062SHong Zhang 4400880e062SHong Zhang if (roworiented) { 4410880e062SHong Zhang stepval = (n-1)*bs; 4420880e062SHong Zhang } else { 4430880e062SHong Zhang stepval = (m-1)*bs; 4440880e062SHong Zhang } 4450880e062SHong Zhang for (i=0; i<m; i++) { 4460880e062SHong Zhang if (im[i] < 0) continue; 4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 44877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 4490880e062SHong Zhang #endif 4500880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4510880e062SHong Zhang row = im[i] - rstart; 4520880e062SHong Zhang for (j=0; j<n; j++) { 4530880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4540880e062SHong Zhang if ((roworiented) && (n == 1)) { 455f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4560880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 457f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4580880e062SHong Zhang } else { /* Here a copy is required */ 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4650880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4660880e062SHong Zhang *barray++ = *value++; 4670880e062SHong Zhang } 4680880e062SHong Zhang } 4690880e062SHong Zhang barray -=bs2; 4700880e062SHong Zhang } 4710880e062SHong Zhang 4720880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4730880e062SHong Zhang col = in[j] - cstart; 4740880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4750880e062SHong Zhang } 4760880e062SHong Zhang else if (in[j] < 0) continue; 4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 47877431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 4790880e062SHong Zhang #endif 4800880e062SHong Zhang else { 4810880e062SHong Zhang if (mat->was_assembled) { 4820880e062SHong Zhang if (!baij->colmap) { 483653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4840880e062SHong Zhang } 4850880e062SHong Zhang 4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4881302d50aSBarry Smith { PetscInt data; 4890880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4900880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4910880e062SHong Zhang } 4920880e062SHong Zhang #else 4930880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4940880e062SHong Zhang #endif 4950880e062SHong Zhang #endif 4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4970880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4980880e062SHong Zhang col = (col - 1)/bs; 4990880e062SHong Zhang #else 5000880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5010880e062SHong Zhang #endif 5020880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5030880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5040880e062SHong Zhang col = in[j]; 5050880e062SHong Zhang } 5060880e062SHong Zhang } 5070880e062SHong Zhang else col = in[j]; 508e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5090880e062SHong Zhang } 5100880e062SHong Zhang } 5110880e062SHong Zhang } else { 5120880e062SHong Zhang if (!baij->donotstash) { 5130880e062SHong Zhang if (roworiented) { 5140880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5150880e062SHong Zhang } else { 5160880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5170880e062SHong Zhang } 5180880e062SHong Zhang } 5190880e062SHong Zhang } 5200880e062SHong Zhang } 5210880e062SHong Zhang PetscFunctionReturn(0); 522a30f8f8cSSatish Balay } 523a30f8f8cSSatish Balay 524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 5251302d50aSBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 5261302d50aSBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5271302d50aSBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5284a2ae208SSatish Balay #undef __FUNCT__ 5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 5301302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 531a30f8f8cSSatish Balay { 532a30f8f8cSSatish Balay PetscFunctionBegin; 5331302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 53496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 535a30f8f8cSSatish Balay } 536a30f8f8cSSatish Balay 5374a2ae208SSatish Balay #undef __FUNCT__ 5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 5391302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 540a30f8f8cSSatish Balay { 541a30f8f8cSSatish Balay PetscFunctionBegin; 5421302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 54396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 5531302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 55777431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 55877431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 56277431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 56377431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data --; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay } else { 58529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay PetscFunctionReturn(0); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay 5914a2ae208SSatish Balay #undef __FUNCT__ 5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 594a30f8f8cSSatish Balay { 595a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 596dfbe8321SBarry Smith PetscErrorCode ierr; 597a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 598a30f8f8cSSatish Balay 599a30f8f8cSSatish Balay PetscFunctionBegin; 600a30f8f8cSSatish Balay if (baij->size == 1) { 601a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 602a30f8f8cSSatish Balay } else { 603a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 604f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 605a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 607a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 608a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 609d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 610a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 611a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 612a30f8f8cSSatish Balay } else { 61329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 614a30f8f8cSSatish Balay } 615a30f8f8cSSatish Balay } 616a30f8f8cSSatish Balay PetscFunctionReturn(0); 617a30f8f8cSSatish Balay } 618a30f8f8cSSatish Balay 619a30f8f8cSSatish Balay /* 620a30f8f8cSSatish Balay Creates the hash table, and sets the table 621a30f8f8cSSatish Balay This table is created only once. 622a30f8f8cSSatish Balay If new entried need to be added to the matrix 623a30f8f8cSSatish Balay then the hash table has to be destroyed and 624a30f8f8cSSatish Balay recreated. 625a30f8f8cSSatish Balay */ 6264a2ae208SSatish Balay #undef __FUNCT__ 6274a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 628dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 629a30f8f8cSSatish Balay { 630a30f8f8cSSatish Balay PetscFunctionBegin; 6311302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 63296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay 6354a2ae208SSatish Balay #undef __FUNCT__ 6364a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 637dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 638a30f8f8cSSatish Balay { 639a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 640dfbe8321SBarry Smith PetscErrorCode ierr; 6411302d50aSBarry Smith PetscInt nstash,reallocs; 642a30f8f8cSSatish Balay InsertMode addv; 643a30f8f8cSSatish Balay 644a30f8f8cSSatish Balay PetscFunctionBegin; 645a30f8f8cSSatish Balay if (baij->donotstash) { 646a30f8f8cSSatish Balay PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 650a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 651a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 65229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 653a30f8f8cSSatish Balay } 654a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 657a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 658a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 65977431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs); 660a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 66177431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs); 662a30f8f8cSSatish Balay PetscFunctionReturn(0); 663a30f8f8cSSatish Balay } 664a30f8f8cSSatish Balay 6654a2ae208SSatish Balay #undef __FUNCT__ 6664a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 667dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 668a30f8f8cSSatish Balay { 669a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 670a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 671a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 6726849ba73SBarry Smith PetscErrorCode ierr; 67313f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 6741302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 67513f74950SBarry Smith PetscMPIInt n; 676a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 677a30f8f8cSSatish Balay MatScalar *val; 678a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 679a30f8f8cSSatish Balay 680a30f8f8cSSatish Balay PetscFunctionBegin; 681a30f8f8cSSatish Balay 682a30f8f8cSSatish Balay if (!baij->donotstash) { 683a30f8f8cSSatish Balay while (1) { 684a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 685a30f8f8cSSatish Balay if (!flg) break; 686a30f8f8cSSatish Balay 687a30f8f8cSSatish Balay for (i=0; i<n;) { 688a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 689a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 690a30f8f8cSSatish Balay if (j < n) ncols = j-i; 691a30f8f8cSSatish Balay else ncols = n-i; 692a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 693a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 694a30f8f8cSSatish Balay i = j; 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay } 697a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 698a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 699a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 700a30f8f8cSSatish Balay restore the original flags */ 701a30f8f8cSSatish Balay r1 = baij->roworiented; 702a30f8f8cSSatish Balay r2 = a->roworiented; 703a30f8f8cSSatish Balay r3 = b->roworiented; 704a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 705a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 706a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 707a30f8f8cSSatish Balay while (1) { 708a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 709a30f8f8cSSatish Balay if (!flg) break; 710a30f8f8cSSatish Balay 711a30f8f8cSSatish Balay for (i=0; i<n;) { 712a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 713a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 714a30f8f8cSSatish Balay if (j < n) ncols = j-i; 715a30f8f8cSSatish Balay else ncols = n-i; 716a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 717a30f8f8cSSatish Balay i = j; 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay } 720a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 721a30f8f8cSSatish Balay baij->roworiented = r1; 722a30f8f8cSSatish Balay a->roworiented = r2; 723a30f8f8cSSatish Balay b->roworiented = r3; 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay 726a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 727a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 728a30f8f8cSSatish Balay 729a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 730a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 731a30f8f8cSSatish Balay /* 732a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 733a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 734a30f8f8cSSatish Balay */ 735a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 736a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 737a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 738c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay 742a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 74340781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 746a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 747a30f8f8cSSatish Balay 748a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 749a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 750f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 751a30f8f8cSSatish Balay baij->ht_total_ct = 0; 752a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 753a30f8f8cSSatish Balay } 754a30f8f8cSSatish Balay #endif 755a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 756c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 757a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 758a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 759a30f8f8cSSatish Balay } 760a30f8f8cSSatish Balay 761a30f8f8cSSatish Balay if (baij->rowvalues) { 762a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 763a30f8f8cSSatish Balay baij->rowvalues = 0; 764a30f8f8cSSatish Balay } 7655222a1afSHong Zhang 766a30f8f8cSSatish Balay PetscFunctionReturn(0); 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay 7694a2ae208SSatish Balay #undef __FUNCT__ 7704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7716849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 772a30f8f8cSSatish Balay { 773a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 774dfbe8321SBarry Smith PetscErrorCode ierr; 775521d7252SBarry Smith PetscInt bs = mat->bs; 7761302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 77732077d6dSBarry Smith PetscTruth iascii,isdraw; 778b0a32e0cSBarry Smith PetscViewer sviewer; 779f3ef73ceSBarry Smith PetscViewerFormat format; 780a30f8f8cSSatish Balay 781a30f8f8cSSatish Balay PetscFunctionBegin; 78232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 783fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 78432077d6dSBarry Smith if (iascii) { 785b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 786456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 787a30f8f8cSSatish Balay MatInfo info; 788a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 789a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 79077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 79177431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 792521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 793a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 79477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 795a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 79677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 797b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 798a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 799a30f8f8cSSatish Balay PetscFunctionReturn(0); 800fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 80177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 802a30f8f8cSSatish Balay PetscFunctionReturn(0); 803a30f8f8cSSatish Balay } 804a30f8f8cSSatish Balay } 805a30f8f8cSSatish Balay 806a30f8f8cSSatish Balay if (isdraw) { 807b0a32e0cSBarry Smith PetscDraw draw; 808a30f8f8cSSatish Balay PetscTruth isnull; 809b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 810b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 811a30f8f8cSSatish Balay } 812a30f8f8cSSatish Balay 813a30f8f8cSSatish Balay if (size == 1) { 814e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 815a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 816a30f8f8cSSatish Balay } else { 817a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 818a30f8f8cSSatish Balay Mat A; 81965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 82065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 8211302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 822a30f8f8cSSatish Balay MatScalar *a; 823a30f8f8cSSatish Balay 824f204ca49SKris Buschelman /* Should this be the same type as mat? */ 825a30f8f8cSSatish Balay if (!rank) { 826f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 827a30f8f8cSSatish Balay } else { 828f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 829a30f8f8cSSatish Balay } 830f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 831521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 832b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 833a30f8f8cSSatish Balay 834a30f8f8cSSatish Balay /* copy over the A part */ 83565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 836a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 8371302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 838a30f8f8cSSatish Balay 839a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 840a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 841a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 842a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 843a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 844a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 845a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 846a30f8f8cSSatish Balay col++; a += bs; 847a30f8f8cSSatish Balay } 848a30f8f8cSSatish Balay } 849a30f8f8cSSatish Balay } 850a30f8f8cSSatish Balay /* copy over the B part */ 85165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 85265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 853a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 854a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 855a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 856a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 857a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 858a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 859a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 860a30f8f8cSSatish Balay col++; a += bs; 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay } 864a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 865a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 866a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 867a30f8f8cSSatish Balay /* 868a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 869b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 870a30f8f8cSSatish Balay */ 871b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 87265d70643SHong Zhang if (!rank) { 873e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 874a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 875a30f8f8cSSatish Balay } 876b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 877a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay PetscFunctionReturn(0); 880a30f8f8cSSatish Balay } 881a30f8f8cSSatish Balay 8824a2ae208SSatish Balay #undef __FUNCT__ 8834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 884dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 885a30f8f8cSSatish Balay { 886dfbe8321SBarry Smith PetscErrorCode ierr; 88732077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 888a30f8f8cSSatish Balay 889a30f8f8cSSatish Balay PetscFunctionBegin; 89032077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 891fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 892b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 893fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 89432077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 895a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 896a30f8f8cSSatish Balay } else { 8971302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 898a30f8f8cSSatish Balay } 899a30f8f8cSSatish Balay PetscFunctionReturn(0); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 9024a2ae208SSatish Balay #undef __FUNCT__ 9034a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 904dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 905a30f8f8cSSatish Balay { 906a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 907dfbe8321SBarry Smith PetscErrorCode ierr; 908a30f8f8cSSatish Balay 909a30f8f8cSSatish Balay PetscFunctionBegin; 910a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 91177431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 912a30f8f8cSSatish Balay #endif 913a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 914a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 915a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 916a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 917a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 918a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 919a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 920a30f8f8cSSatish Balay #else 921a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 922a30f8f8cSSatish Balay #endif 923a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 924a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 925a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 92640781036SHong Zhang if (baij->slvec0) { 92740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 92840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 92940781036SHong Zhang } 93040781036SHong Zhang if (baij->slvec1) { 93140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 93240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 93340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 93440781036SHong Zhang } 93540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 937a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 938a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 939a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 940a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 941a30f8f8cSSatish Balay #endif 942a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 943901853e0SKris Buschelman 944901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 945901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 946901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 947901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 948a30f8f8cSSatish Balay PetscFunctionReturn(0); 949a30f8f8cSSatish Balay } 950a30f8f8cSSatish Balay 9514a2ae208SSatish Balay #undef __FUNCT__ 952a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 953dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 954a9d4b620SHong Zhang { 955a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 956dfbe8321SBarry Smith PetscErrorCode ierr; 957521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 958a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 959a9d4b620SHong Zhang 960a9d4b620SHong Zhang PetscFunctionBegin; 961a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 962a9d4b620SHong Zhang if (nt != A->n) { 963a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 964a9d4b620SHong Zhang } 965a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 966a9d4b620SHong Zhang if (nt != A->m) { 967a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 968a9d4b620SHong Zhang } 969a9d4b620SHong Zhang 970a9d4b620SHong Zhang /* diagonal part */ 971a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 972a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 973a9d4b620SHong Zhang 974a9d4b620SHong Zhang /* subdiagonal part */ 975a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 976a9d4b620SHong Zhang 977a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9781ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9791ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 980a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9811ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 982a9d4b620SHong Zhang 983a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9841ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 985a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 986a9d4b620SHong Zhang 987a9d4b620SHong Zhang /* supperdiagonal part */ 988a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 989a9d4b620SHong Zhang 990a9d4b620SHong Zhang PetscFunctionReturn(0); 991a9d4b620SHong Zhang } 992a9d4b620SHong Zhang 993a9d4b620SHong Zhang #undef __FUNCT__ 99440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 995dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 996a30f8f8cSSatish Balay { 997a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 998dfbe8321SBarry Smith PetscErrorCode ierr; 9991302d50aSBarry Smith PetscInt nt; 1000a30f8f8cSSatish Balay 1001a30f8f8cSSatish Balay PetscFunctionBegin; 1002a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1003b5df2d14SHong Zhang if (nt != A->n) { 100429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1005a30f8f8cSSatish Balay } 1006a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1007b5df2d14SHong Zhang if (nt != A->m) { 100829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1009a30f8f8cSSatish Balay } 101065d70643SHong Zhang 1011b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1012b941877fSHong Zhang /* do diagonal part */ 1013b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1014b941877fSHong Zhang /* do supperdiagonal part */ 1015b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1016b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1017b941877fSHong Zhang /* do subdiagonal part */ 1018b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1019b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1020b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 102165d70643SHong Zhang 1022a30f8f8cSSatish Balay PetscFunctionReturn(0); 1023a30f8f8cSSatish Balay } 1024a30f8f8cSSatish Balay 10254a2ae208SSatish Balay #undef __FUNCT__ 10264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1027dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1028a30f8f8cSSatish Balay { 1029de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1030dfbe8321SBarry Smith PetscErrorCode ierr; 1031521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 1032a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1033a9d4b620SHong Zhang 1034a9d4b620SHong Zhang PetscFunctionBegin; 1035a9d4b620SHong Zhang /* 103656faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 103756faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1038a9d4b620SHong Zhang */ 1039a9d4b620SHong Zhang /* diagonal part */ 1040a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1041a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1042a9d4b620SHong Zhang 1043a9d4b620SHong Zhang /* subdiagonal part */ 1044a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1045a9d4b620SHong Zhang 1046a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10471ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10481ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1049a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 10501ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1051a9d4b620SHong Zhang 1052a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 10531ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1054a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1055a9d4b620SHong Zhang 1056a9d4b620SHong Zhang /* supperdiagonal part */ 1057a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1058a9d4b620SHong Zhang 1059a9d4b620SHong Zhang PetscFunctionReturn(0); 1060a9d4b620SHong Zhang } 1061a9d4b620SHong Zhang 1062a9d4b620SHong Zhang #undef __FUNCT__ 1063a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1064dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1065a9d4b620SHong Zhang { 1066a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1067dfbe8321SBarry Smith PetscErrorCode ierr; 1068a30f8f8cSSatish Balay 1069a30f8f8cSSatish Balay PetscFunctionBegin; 1070b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1071b941877fSHong Zhang /* do diagonal part */ 1072b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1073b941877fSHong Zhang /* do supperdiagonal part */ 1074b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1075de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1076de8b6608SHong Zhang 1077b941877fSHong Zhang /* do subdiagonal part */ 1078a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1079a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1080a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1081aa482183SHong Zhang 1082a30f8f8cSSatish Balay PetscFunctionReturn(0); 1083a30f8f8cSSatish Balay } 1084a30f8f8cSSatish Balay 10854a2ae208SSatish Balay #undef __FUNCT__ 10864a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1087dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1088a30f8f8cSSatish Balay { 1089dfbe8321SBarry Smith PetscErrorCode ierr; 10905a7c0312SHong Zhang 1091a30f8f8cSSatish Balay PetscFunctionBegin; 10925a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10935a7c0312SHong Zhang PetscFunctionReturn(0); 1094a30f8f8cSSatish Balay } 1095a30f8f8cSSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1099a30f8f8cSSatish Balay { 1100dfbe8321SBarry Smith PetscErrorCode ierr; 11015a7c0312SHong Zhang 1102a30f8f8cSSatish Balay PetscFunctionBegin; 11035a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 11045a7c0312SHong Zhang PetscFunctionReturn(0); 1105a30f8f8cSSatish Balay } 1106a30f8f8cSSatish Balay 1107a30f8f8cSSatish Balay /* 1108a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1109a30f8f8cSSatish Balay diagonal block 1110a30f8f8cSSatish Balay */ 11114a2ae208SSatish Balay #undef __FUNCT__ 11124a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1113dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1114a30f8f8cSSatish Balay { 1115a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1116dfbe8321SBarry Smith PetscErrorCode ierr; 1117a30f8f8cSSatish Balay 1118a30f8f8cSSatish Balay PetscFunctionBegin; 111929bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1120a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1121a30f8f8cSSatish Balay PetscFunctionReturn(0); 1122a30f8f8cSSatish Balay } 1123a30f8f8cSSatish Balay 11244a2ae208SSatish Balay #undef __FUNCT__ 11254a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1126dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1127a30f8f8cSSatish Balay { 1128a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1129dfbe8321SBarry Smith PetscErrorCode ierr; 1130a30f8f8cSSatish Balay 1131a30f8f8cSSatish Balay PetscFunctionBegin; 1132a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1133a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1134a30f8f8cSSatish Balay PetscFunctionReturn(0); 1135a30f8f8cSSatish Balay } 1136a30f8f8cSSatish Balay 11374a2ae208SSatish Balay #undef __FUNCT__ 11384a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11391302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1140a30f8f8cSSatish Balay { 1141a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 114287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 11436849ba73SBarry Smith PetscErrorCode ierr; 1144521d7252SBarry Smith PetscInt bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 11451302d50aSBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 11461302d50aSBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstart; 1147a30f8f8cSSatish Balay 1148a30f8f8cSSatish Balay PetscFunctionBegin; 114929bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1150a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1151a30f8f8cSSatish Balay 1152a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1153a30f8f8cSSatish Balay /* 1154a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1155a30f8f8cSSatish Balay */ 1156a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1157a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 11581302d50aSBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1159a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1160a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1161a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1162a30f8f8cSSatish Balay } 11631302d50aSBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 11641302d50aSBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1165a30f8f8cSSatish Balay } 1166a30f8f8cSSatish Balay 116729bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1168a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1169a30f8f8cSSatish Balay 1170a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1171a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1172a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1173a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay nztot = nzA + nzB; 1176a30f8f8cSSatish Balay 1177a30f8f8cSSatish Balay cmap = mat->garray; 1178a30f8f8cSSatish Balay if (v || idx) { 1179a30f8f8cSSatish Balay if (nztot) { 1180a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 11811302d50aSBarry Smith PetscInt imark = -1; 1182a30f8f8cSSatish Balay if (v) { 1183a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1184a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1185a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1186a30f8f8cSSatish Balay else break; 1187a30f8f8cSSatish Balay } 1188a30f8f8cSSatish Balay imark = i; 1189a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1190a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1191a30f8f8cSSatish Balay } 1192a30f8f8cSSatish Balay if (idx) { 1193a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1194a30f8f8cSSatish Balay if (imark > -1) { 1195a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1196a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1197a30f8f8cSSatish Balay } 1198a30f8f8cSSatish Balay } else { 1199a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1200a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1201a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1202a30f8f8cSSatish Balay else break; 1203a30f8f8cSSatish Balay } 1204a30f8f8cSSatish Balay imark = i; 1205a30f8f8cSSatish Balay } 1206a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1207a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1208a30f8f8cSSatish Balay } 1209a30f8f8cSSatish Balay } else { 1210a30f8f8cSSatish Balay if (idx) *idx = 0; 1211a30f8f8cSSatish Balay if (v) *v = 0; 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay } 1214a30f8f8cSSatish Balay *nz = nztot; 1215a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1216a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1217a30f8f8cSSatish Balay PetscFunctionReturn(0); 1218a30f8f8cSSatish Balay } 1219a30f8f8cSSatish Balay 12204a2ae208SSatish Balay #undef __FUNCT__ 12214a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12221302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1223a30f8f8cSSatish Balay { 1224a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1225a30f8f8cSSatish Balay 1226a30f8f8cSSatish Balay PetscFunctionBegin; 1227a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 122829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1229a30f8f8cSSatish Balay } 1230a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1231a30f8f8cSSatish Balay PetscFunctionReturn(0); 1232a30f8f8cSSatish Balay } 1233a30f8f8cSSatish Balay 12344a2ae208SSatish Balay #undef __FUNCT__ 12354a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1236dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1237a30f8f8cSSatish Balay { 1238a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1239dfbe8321SBarry Smith PetscErrorCode ierr; 1240a30f8f8cSSatish Balay 1241a30f8f8cSSatish Balay PetscFunctionBegin; 1242a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1243a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1244a30f8f8cSSatish Balay PetscFunctionReturn(0); 1245a30f8f8cSSatish Balay } 1246a30f8f8cSSatish Balay 12474a2ae208SSatish Balay #undef __FUNCT__ 12484a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1249dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1250a30f8f8cSSatish Balay { 1251a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1252a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1253dfbe8321SBarry Smith PetscErrorCode ierr; 1254a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1255a30f8f8cSSatish Balay 1256a30f8f8cSSatish Balay PetscFunctionBegin; 1257521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1258a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1259a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1260a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1261a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1262a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1263a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1264a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1265a30f8f8cSSatish Balay info->nz_used = isend[0]; 1266a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1267a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1268a30f8f8cSSatish Balay info->memory = isend[3]; 1269a30f8f8cSSatish Balay info->mallocs = isend[4]; 1270a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1271d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1272a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1273a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1274a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1275a30f8f8cSSatish Balay info->memory = irecv[3]; 1276a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1277a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1278d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1279a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1280a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1281a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1282a30f8f8cSSatish Balay info->memory = irecv[3]; 1283a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1284a30f8f8cSSatish Balay } else { 128577431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1286a30f8f8cSSatish Balay } 1287f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1288f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1289f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1290f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1291a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1292a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1293a30f8f8cSSatish Balay info->factor_mallocs = 0; 1294a30f8f8cSSatish Balay PetscFunctionReturn(0); 1295a30f8f8cSSatish Balay } 1296a30f8f8cSSatish Balay 12974a2ae208SSatish Balay #undef __FUNCT__ 12984a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1299dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1300a30f8f8cSSatish Balay { 1301a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1302dfbe8321SBarry Smith PetscErrorCode ierr; 1303a30f8f8cSSatish Balay 1304a30f8f8cSSatish Balay PetscFunctionBegin; 1305e98b92d7SKris Buschelman switch (op) { 1306e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1307e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1308e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1309e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1310e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1311e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1312e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1313a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1314a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1315e98b92d7SKris Buschelman break; 1316e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1317a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1318a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1320e98b92d7SKris Buschelman break; 1321e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1322e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1323e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1324b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1325e98b92d7SKris Buschelman break; 1326e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1327a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1328a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1329a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1330e98b92d7SKris Buschelman break; 1331e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1332a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1333e98b92d7SKris Buschelman break; 1334e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 133529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1336e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1337a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1338e98b92d7SKris Buschelman break; 13399a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13409a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13419a4540c5SBarry Smith case MAT_HERMITIAN: 13429a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 134377e54ba9SKris Buschelman case MAT_SYMMETRIC: 134477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13459a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13469a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13479a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 134877e54ba9SKris Buschelman break; 1349e98b92d7SKris Buschelman default: 135029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1351a30f8f8cSSatish Balay } 1352a30f8f8cSSatish Balay PetscFunctionReturn(0); 1353a30f8f8cSSatish Balay } 1354a30f8f8cSSatish Balay 13554a2ae208SSatish Balay #undef __FUNCT__ 13568115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1357dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1358a30f8f8cSSatish Balay { 1359dfbe8321SBarry Smith PetscErrorCode ierr; 1360a30f8f8cSSatish Balay PetscFunctionBegin; 1361999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13628115998fSBarry Smith PetscFunctionReturn(0); 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay 13654a2ae208SSatish Balay #undef __FUNCT__ 13664a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1367dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1368a30f8f8cSSatish Balay { 1369a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1370a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1371dfbe8321SBarry Smith PetscErrorCode ierr; 13721302d50aSBarry Smith PetscInt s1,s2,s3; 1373a30f8f8cSSatish Balay 1374a30f8f8cSSatish Balay PetscFunctionBegin; 1375a30f8f8cSSatish Balay if (ll != rr) { 137629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1377a30f8f8cSSatish Balay } 1378a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1379a30f8f8cSSatish Balay if (rr) { 1380a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 138129bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1382a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1383a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1384a30f8f8cSSatish Balay /*} if (ll) { */ 1385a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 138629bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1387a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1388a30f8f8cSSatish Balay /* } */ 1389a30f8f8cSSatish Balay /* scale the diagonal block */ 1390a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1391a30f8f8cSSatish Balay 1392a30f8f8cSSatish Balay /* if (rr) { */ 1393a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1394a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay } 1397a30f8f8cSSatish Balay 1398a30f8f8cSSatish Balay PetscFunctionReturn(0); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay 14014a2ae208SSatish Balay #undef __FUNCT__ 14024a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1403dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1404a30f8f8cSSatish Balay { 1405a30f8f8cSSatish Balay PetscFunctionBegin; 1406c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1407a30f8f8cSSatish Balay } 1408a30f8f8cSSatish Balay 14094a2ae208SSatish Balay #undef __FUNCT__ 14104a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1411dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1412a30f8f8cSSatish Balay { 1413a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1414a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 14151302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1416dfbe8321SBarry Smith PetscErrorCode ierr; 1417a30f8f8cSSatish Balay 1418a30f8f8cSSatish Balay PetscFunctionBegin; 1419a30f8f8cSSatish Balay if (!a->rank) { 1420a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1421a30f8f8cSSatish Balay } 14221302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1423a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1424a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1425a30f8f8cSSatish Balay PetscFunctionReturn(0); 1426a30f8f8cSSatish Balay } 1427a30f8f8cSSatish Balay 14284a2ae208SSatish Balay #undef __FUNCT__ 14294a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1430dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1431a30f8f8cSSatish Balay { 1432f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1433dfbe8321SBarry Smith PetscErrorCode ierr; 1434a30f8f8cSSatish Balay 1435a30f8f8cSSatish Balay PetscFunctionBegin; 1436a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1437a30f8f8cSSatish Balay PetscFunctionReturn(0); 1438a30f8f8cSSatish Balay } 1439a30f8f8cSSatish Balay 14406849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1441a30f8f8cSSatish Balay 14424a2ae208SSatish Balay #undef __FUNCT__ 14434a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1444dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1445a30f8f8cSSatish Balay { 1446a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1447a30f8f8cSSatish Balay Mat a,b,c,d; 1448a30f8f8cSSatish Balay PetscTruth flg; 1449dfbe8321SBarry Smith PetscErrorCode ierr; 1450a30f8f8cSSatish Balay 1451a30f8f8cSSatish Balay PetscFunctionBegin; 1452a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1453a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1454a30f8f8cSSatish Balay 1455a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1456a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1457a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1458a30f8f8cSSatish Balay } 1459a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1460a30f8f8cSSatish Balay PetscFunctionReturn(0); 1461a30f8f8cSSatish Balay } 1462a30f8f8cSSatish Balay 14634a2ae208SSatish Balay #undef __FUNCT__ 14644a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1465dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1466273d9f13SBarry Smith { 1467dfbe8321SBarry Smith PetscErrorCode ierr; 1468273d9f13SBarry Smith 1469273d9f13SBarry Smith PetscFunctionBegin; 1470273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1471273d9f13SBarry Smith PetscFunctionReturn(0); 1472273d9f13SBarry Smith } 1473a5e6ed63SBarry Smith 1474a5e6ed63SBarry Smith #undef __FUNCT__ 1475a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14761302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1477a5e6ed63SBarry Smith { 14786849ba73SBarry Smith PetscErrorCode ierr; 14791302d50aSBarry Smith PetscInt i; 1480a5e6ed63SBarry Smith PetscTruth flg; 1481a5e6ed63SBarry Smith 14826849ba73SBarry Smith PetscFunctionBegin; 1483a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1484a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1485a5e6ed63SBarry Smith if (!flg) { 14861302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1487a5e6ed63SBarry Smith } 1488a5e6ed63SBarry Smith } 1489a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1490a5e6ed63SBarry Smith PetscFunctionReturn(0); 1491a5e6ed63SBarry Smith } 1492a5e6ed63SBarry Smith 1493a5e6ed63SBarry Smith 1494a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1495a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1496a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1497a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1498a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1499a9d4b620SHong Zhang MatMult_MPISBAIJ, 150097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1501a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1502a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 150697304618SKris Buschelman /*10*/ 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 15092798e883SHong Zhang MatRelax_MPISBAIJ, 1510a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 151197304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1512a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1513a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1514a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1515a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 151697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1517a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1518a30f8f8cSSatish Balay 0, 1519a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1520a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 152197304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 152697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1527b5df2d14SHong Zhang 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 153197304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 153697304618SKris Buschelman /*40*/ 0, 1537a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1538d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1539a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1540a30f8f8cSSatish Balay 0, 154197304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1542a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 1546521d7252SBarry Smith /*50*/ 0, 1547a30f8f8cSSatish Balay 0, 1548a30f8f8cSSatish Balay 0, 1549a30f8f8cSSatish Balay 0, 1550a30f8f8cSSatish Balay 0, 155197304618SKris Buschelman /*55*/ 0, 1552a30f8f8cSSatish Balay 0, 1553a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1554a30f8f8cSSatish Balay 0, 1555a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 155697304618SKris Buschelman /*60*/ 0, 1557a30f8f8cSSatish Balay 0, 1558a30f8f8cSSatish Balay 0, 15598a124369SBarry Smith MatGetPetscMaps_Petsc, 156024d5174aSHong Zhang 0, 156197304618SKris Buschelman /*65*/ 0, 156224d5174aSHong Zhang 0, 156324d5174aSHong Zhang 0, 156424d5174aSHong Zhang 0, 156524d5174aSHong Zhang 0, 156697304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 156724d5174aSHong Zhang 0, 156897304618SKris Buschelman 0, 156997304618SKris Buschelman 0, 157097304618SKris Buschelman 0, 157197304618SKris Buschelman /*75*/ 0, 157297304618SKris Buschelman 0, 157397304618SKris Buschelman 0, 157497304618SKris Buschelman 0, 157597304618SKris Buschelman 0, 157697304618SKris Buschelman /*80*/ 0, 157797304618SKris Buschelman 0, 157897304618SKris Buschelman 0, 157997304618SKris Buschelman 0, 1580865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1581865e5f61SKris Buschelman /*85*/ 0, 1582865e5f61SKris Buschelman 0, 1583865e5f61SKris Buschelman 0, 1584865e5f61SKris Buschelman 0, 1585865e5f61SKris Buschelman 0, 1586865e5f61SKris Buschelman /*90*/ 0, 1587865e5f61SKris Buschelman 0, 1588865e5f61SKris Buschelman 0, 1589865e5f61SKris Buschelman 0, 1590865e5f61SKris Buschelman 0, 1591865e5f61SKris Buschelman /*95*/ 0, 1592865e5f61SKris Buschelman 0, 1593865e5f61SKris Buschelman 0, 1594865e5f61SKris Buschelman 0}; 1595a30f8f8cSSatish Balay 1596a30f8f8cSSatish Balay 1597a30f8f8cSSatish Balay EXTERN_C_BEGIN 15984a2ae208SSatish Balay #undef __FUNCT__ 15994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1600dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1601a30f8f8cSSatish Balay { 1602a30f8f8cSSatish Balay PetscFunctionBegin; 1603a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1604a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1605a30f8f8cSSatish Balay PetscFunctionReturn(0); 1606a30f8f8cSSatish Balay } 1607a30f8f8cSSatish Balay EXTERN_C_END 1608a30f8f8cSSatish Balay 1609273d9f13SBarry Smith EXTERN_C_BEGIN 16104a2ae208SSatish Balay #undef __FUNCT__ 1611a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 16121302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1613a23d5eceSKris Buschelman { 1614a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1615dfbe8321SBarry Smith PetscErrorCode ierr; 16161302d50aSBarry Smith PetscInt i,mbs,Mbs; 1617a23d5eceSKris Buschelman 1618a23d5eceSKris Buschelman PetscFunctionBegin; 1619a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1620a23d5eceSKris Buschelman 1621a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1622a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1623a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 162477431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 162577431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1626a23d5eceSKris Buschelman if (d_nnz) { 1627a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 162877431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1629a23d5eceSKris Buschelman } 1630a23d5eceSKris Buschelman } 1631a23d5eceSKris Buschelman if (o_nnz) { 1632a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 163377431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1634a23d5eceSKris Buschelman } 1635a23d5eceSKris Buschelman } 1636a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1637a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1638a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1639a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1640a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1641a23d5eceSKris Buschelman 1642a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1643a23d5eceSKris Buschelman mbs = B->m/bs; 1644a23d5eceSKris Buschelman Mbs = B->M/bs; 1645a23d5eceSKris Buschelman if (mbs*bs != B->m) { 164677431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1647a23d5eceSKris Buschelman } 1648a23d5eceSKris Buschelman 1649521d7252SBarry Smith B->bs = bs; 1650a23d5eceSKris Buschelman b->bs2 = bs*bs; 1651a23d5eceSKris Buschelman b->mbs = mbs; 1652a23d5eceSKris Buschelman b->nbs = mbs; 1653a23d5eceSKris Buschelman b->Mbs = Mbs; 1654a23d5eceSKris Buschelman b->Nbs = Mbs; 1655a23d5eceSKris Buschelman 1656*a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1657a23d5eceSKris Buschelman b->rowners[0] = 0; 1658a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1659a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1660a23d5eceSKris Buschelman } 1661a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1662a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1663a23d5eceSKris Buschelman b->cstart = b->rstart; 1664a23d5eceSKris Buschelman b->cend = b->rend; 1665a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1666a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1667a23d5eceSKris Buschelman } 1668a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1669a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1670a23d5eceSKris Buschelman 1671a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1672a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1673a23d5eceSKris Buschelman 16749c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 16759c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1676c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 16779c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 16789c097c71SKris Buschelman 16799c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 16804aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1681589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 16829c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1683a23d5eceSKris Buschelman 1684a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1685a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1686a23d5eceSKris Buschelman 1687a23d5eceSKris Buschelman PetscFunctionReturn(0); 1688a23d5eceSKris Buschelman } 1689a23d5eceSKris Buschelman EXTERN_C_END 1690a23d5eceSKris Buschelman 16910bad9183SKris Buschelman /*MC 1692fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16930bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16940bad9183SKris Buschelman 16950bad9183SKris Buschelman Options Database Keys: 16960bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16970bad9183SKris Buschelman 16980bad9183SKris Buschelman Level: beginner 16990bad9183SKris Buschelman 17000bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17010bad9183SKris Buschelman M*/ 17020bad9183SKris Buschelman 1703a23d5eceSKris Buschelman EXTERN_C_BEGIN 1704a23d5eceSKris Buschelman #undef __FUNCT__ 17054a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1706dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1707b5df2d14SHong Zhang { 1708b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1709dfbe8321SBarry Smith PetscErrorCode ierr; 1710b5df2d14SHong Zhang PetscTruth flg; 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang PetscFunctionBegin; 1713b5df2d14SHong Zhang 1714b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1715b0a32e0cSBarry Smith B->data = (void*)b; 1716b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1717b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1718b5df2d14SHong Zhang 1719b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1720b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1721b5df2d14SHong Zhang B->mapping = 0; 1722b5df2d14SHong Zhang B->factor = 0; 1723b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1724b5df2d14SHong Zhang 1725b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1726b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1727b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1728b5df2d14SHong Zhang 1729b5df2d14SHong Zhang /* build local table of row and column ownerships */ 17301302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1731273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1732273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 17331302d50aSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang /* build cache for off array entries formed */ 1736b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1737b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1738b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1739b5df2d14SHong Zhang b->garray = PETSC_NULL; 1740b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1741b5df2d14SHong Zhang 1742f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1743b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 174464a35ccbSBarry Smith b->setvalueslen = 0; 1745b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1746b5df2d14SHong Zhang #endif 1747b5df2d14SHong Zhang 1748b5df2d14SHong Zhang /* stuff used in block assembly */ 1749b5df2d14SHong Zhang b->barray = 0; 1750b5df2d14SHong Zhang 1751b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1752b5df2d14SHong Zhang b->lvec = 0; 1753b5df2d14SHong Zhang b->Mvctx = 0; 175440781036SHong Zhang b->slvec0 = 0; 175540781036SHong Zhang b->slvec0b = 0; 175640781036SHong Zhang b->slvec1 = 0; 175740781036SHong Zhang b->slvec1a = 0; 175840781036SHong Zhang b->slvec1b = 0; 175940781036SHong Zhang b->sMvctx = 0; 1760b5df2d14SHong Zhang 1761b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1762b5df2d14SHong Zhang b->rowindices = 0; 1763b5df2d14SHong Zhang b->rowvalues = 0; 1764b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1765b5df2d14SHong Zhang 1766b5df2d14SHong Zhang /* hash table stuff */ 1767b5df2d14SHong Zhang b->ht = 0; 1768b5df2d14SHong Zhang b->hd = 0; 1769b5df2d14SHong Zhang b->ht_size = 0; 1770b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1771b5df2d14SHong Zhang b->ht_fact = 0; 1772b5df2d14SHong Zhang b->ht_total_ct = 0; 1773b5df2d14SHong Zhang b->ht_insert_ct = 0; 1774b5df2d14SHong Zhang 1775e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1776b5df2d14SHong Zhang if (flg) { 1777f6275e2eSBarry Smith PetscReal fact = 1.39; 1778b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1779e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1780b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1781b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1782b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1783b5df2d14SHong Zhang } 1784b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1785b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1786b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1787b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1788b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1789b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1790b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1791b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1792b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1793a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1794a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1795a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 179623ce1328SBarry Smith B->symmetric = PETSC_TRUE; 179723ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 179823ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 179923ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1800b5df2d14SHong Zhang PetscFunctionReturn(0); 1801b5df2d14SHong Zhang } 1802273d9f13SBarry Smith EXTERN_C_END 1803b5df2d14SHong Zhang 1804209238afSKris Buschelman /*MC 1805002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1806209238afSKris Buschelman 1807209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1808209238afSKris Buschelman and MATMPISBAIJ otherwise. 1809209238afSKris Buschelman 1810209238afSKris Buschelman Options Database Keys: 1811209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1812209238afSKris Buschelman 1813209238afSKris Buschelman Level: beginner 1814209238afSKris Buschelman 1815209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1816209238afSKris Buschelman M*/ 1817209238afSKris Buschelman 1818209238afSKris Buschelman EXTERN_C_BEGIN 1819209238afSKris Buschelman #undef __FUNCT__ 1820209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1821dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1822dfbe8321SBarry Smith { 18236849ba73SBarry Smith PetscErrorCode ierr; 18241302d50aSBarry Smith PetscMPIInt size; 1825209238afSKris Buschelman 1826209238afSKris Buschelman PetscFunctionBegin; 1827209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1828209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1829209238afSKris Buschelman if (size == 1) { 1830209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1831209238afSKris Buschelman } else { 1832209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1833209238afSKris Buschelman } 1834209238afSKris Buschelman PetscFunctionReturn(0); 1835209238afSKris Buschelman } 1836209238afSKris Buschelman EXTERN_C_END 1837209238afSKris Buschelman 18384a2ae208SSatish Balay #undef __FUNCT__ 18394a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1840b5df2d14SHong Zhang /*@C 1841b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1842b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1843b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1844b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1845b5df2d14SHong Zhang 1846b5df2d14SHong Zhang Collective on Mat 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang Input Parameters: 1849b5df2d14SHong Zhang + A - the matrix 1850b5df2d14SHong Zhang . bs - size of blockk 1851b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1852b5df2d14SHong Zhang submatrix (same for all local rows) 1853b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18546d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18556d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18566d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1857b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1858b5df2d14SHong Zhang submatrix (same for all local rows). 1859b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1860b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1861b5df2d14SHong Zhang each block row) or PETSC_NULL. 1862b5df2d14SHong Zhang 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang Options Database Keys: 1865b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1866b5df2d14SHong Zhang block calculations (much slower) 1867b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1868b5df2d14SHong Zhang 1869b5df2d14SHong Zhang Notes: 1870b5df2d14SHong Zhang 1871b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1872b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1873b5df2d14SHong Zhang 1874b5df2d14SHong Zhang Storage Information: 1875b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1876b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1877b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1878b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1879b5df2d14SHong Zhang 1880b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1881b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1882b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1883b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1884b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1885b5df2d14SHong Zhang 1886b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1887b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1888b5df2d14SHong Zhang 1889b5df2d14SHong Zhang .vb 1890b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1891b5df2d14SHong Zhang ------------------- 1892b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1893b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1894b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1895b5df2d14SHong Zhang ------------------- 1896b5df2d14SHong Zhang .ve 1897b5df2d14SHong Zhang 1898b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1899b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19006d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19016d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1902b5df2d14SHong Zhang 19036d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19046d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1905b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1906b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1907b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1908b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1909b5df2d14SHong Zhang matrices. 1910b5df2d14SHong Zhang 1911b5df2d14SHong Zhang Level: intermediate 1912b5df2d14SHong Zhang 1913b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1914b5df2d14SHong Zhang 1915b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1916b5df2d14SHong Zhang @*/ 19171302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1918b5df2d14SHong Zhang { 19191302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1920b5df2d14SHong Zhang 1921b5df2d14SHong Zhang PetscFunctionBegin; 1922a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1923a23d5eceSKris Buschelman if (f) { 1924a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1925b5df2d14SHong Zhang } 1926b5df2d14SHong Zhang PetscFunctionReturn(0); 1927b5df2d14SHong Zhang } 1928b5df2d14SHong Zhang 19294a2ae208SSatish Balay #undef __FUNCT__ 19304a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1931a30f8f8cSSatish Balay /*@C 1932a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1933a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1934a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1935a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1936a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1937a30f8f8cSSatish Balay 1938a30f8f8cSSatish Balay Collective on MPI_Comm 1939a30f8f8cSSatish Balay 1940a30f8f8cSSatish Balay Input Parameters: 1941a30f8f8cSSatish Balay + comm - MPI communicator 1942a30f8f8cSSatish Balay . bs - size of blockk 1943a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1944a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1945a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1946a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1947a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1948a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1949a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1950a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1951a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1952a30f8f8cSSatish Balay submatrix (same for all local rows) 1953a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19546d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19556d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19566d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1957a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1958a30f8f8cSSatish Balay submatrix (same for all local rows). 1959a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1960a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1961a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1962a30f8f8cSSatish Balay 1963a30f8f8cSSatish Balay Output Parameter: 1964a30f8f8cSSatish Balay . A - the matrix 1965a30f8f8cSSatish Balay 1966a30f8f8cSSatish Balay Options Database Keys: 1967a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1968a30f8f8cSSatish Balay block calculations (much slower) 1969a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1970a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1971a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1972a30f8f8cSSatish Balay 1973a30f8f8cSSatish Balay Notes: 1974a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1975a30f8f8cSSatish Balay (possibly both). 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1978a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1979a30f8f8cSSatish Balay 1980a30f8f8cSSatish Balay Storage Information: 1981a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1982a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1983a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1984a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1987a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1988a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1989a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1990a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1991a30f8f8cSSatish Balay 1992a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1993a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay .vb 1996a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1997a30f8f8cSSatish Balay ------------------- 1998a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1999a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2000a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2001a30f8f8cSSatish Balay ------------------- 2002a30f8f8cSSatish Balay .ve 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2005a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20066d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20076d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2008a30f8f8cSSatish Balay 20096d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20106d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2011a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2012a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2013a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2014a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2015a30f8f8cSSatish Balay matrices. 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay Level: intermediate 2018a30f8f8cSSatish Balay 2019a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2020a30f8f8cSSatish Balay 2021a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2022a30f8f8cSSatish Balay @*/ 2023a30f8f8cSSatish Balay 20241302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2025a30f8f8cSSatish Balay { 20266849ba73SBarry Smith PetscErrorCode ierr; 20271302d50aSBarry Smith PetscMPIInt size; 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay PetscFunctionBegin; 2030b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2031273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2032273d9f13SBarry Smith if (size > 1) { 2033b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2034b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2035273d9f13SBarry Smith } else { 2036273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2037273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2038273d9f13SBarry Smith } 2039a30f8f8cSSatish Balay PetscFunctionReturn(0); 2040a30f8f8cSSatish Balay } 2041a30f8f8cSSatish Balay 2042a30f8f8cSSatish Balay 20434a2ae208SSatish Balay #undef __FUNCT__ 20444a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20456849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2046a30f8f8cSSatish Balay { 2047a30f8f8cSSatish Balay Mat mat; 2048a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2049dfbe8321SBarry Smith PetscErrorCode ierr; 2050521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 2051387bc808SHong Zhang PetscScalar *array; 2052a30f8f8cSSatish Balay 2053a30f8f8cSSatish Balay PetscFunctionBegin; 2054a30f8f8cSSatish Balay *newmat = 0; 2055b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2056be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20571d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2058e1b6402fSHong Zhang 205982327fa8SHong Zhang mat->factor = matin->factor; 2060273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20627fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20637fff6886SHong Zhang 2064b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2065521d7252SBarry Smith mat->bs = matin->bs; 2066a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2067a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2068a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2069a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2070a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2073a30f8f8cSSatish Balay a->rend = oldmat->rend; 2074a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2075a30f8f8cSSatish Balay a->cend = oldmat->cend; 2076a30f8f8cSSatish Balay a->size = oldmat->size; 2077a30f8f8cSSatish Balay a->rank = oldmat->rank; 2078a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2079a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2080a30f8f8cSSatish Balay a->rowindices = 0; 2081a30f8f8cSSatish Balay a->rowvalues = 0; 2082a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2083a30f8f8cSSatish Balay a->barray = 0; 2084a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2085a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2086a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2087a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2088a30f8f8cSSatish Balay 2089a30f8f8cSSatish Balay /* hash table stuff */ 2090a30f8f8cSSatish Balay a->ht = 0; 2091a30f8f8cSSatish Balay a->hd = 0; 2092a30f8f8cSSatish Balay a->ht_size = 0; 2093a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2094a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2095a30f8f8cSSatish Balay a->ht_total_ct = 0; 2096a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2097a30f8f8cSSatish Balay 20981302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2099a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2100521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 2101a30f8f8cSSatish Balay if (oldmat->colmap) { 2102a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2103a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2104a30f8f8cSSatish Balay #else 21051302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 21061302d50aSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt)); 21071302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2108a30f8f8cSSatish Balay #endif 2109a30f8f8cSSatish Balay } else a->colmap = 0; 2110387bc808SHong Zhang 2111a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21121302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 21131302d50aSBarry Smith PetscLogObjectMemory(mat,len*sizeof(PetscInt)); 21141302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2115a30f8f8cSSatish Balay } else a->garray = 0; 2116a30f8f8cSSatish Balay 2117a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2118b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2119a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2120b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 212182327fa8SHong Zhang 212282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2123387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 212482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2125387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2126387bc808SHong Zhang 2127387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21281ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2129387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2130387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21311ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21321ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2133387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21341ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 2135387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2136387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2137387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2138387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2139387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2140387bc808SHong Zhang 2141387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2142387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2143387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2144387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 214582327fa8SHong Zhang 2146a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2147b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2148a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2149b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2150b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay *newmat = mat; 2152a30f8f8cSSatish Balay PetscFunctionReturn(0); 2153a30f8f8cSSatish Balay } 2154a30f8f8cSSatish Balay 2155a30f8f8cSSatish Balay #include "petscsys.h" 2156a30f8f8cSSatish Balay 21574a2ae208SSatish Balay #undef __FUNCT__ 21584a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2159dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2160a30f8f8cSSatish Balay { 2161a30f8f8cSSatish Balay Mat A; 21626849ba73SBarry Smith PetscErrorCode ierr; 216313f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 216487828ca2SBarry Smith PetscScalar *vals,*buf; 2165a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2166a30f8f8cSSatish Balay MPI_Status status; 216713f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners; 216813f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 216913f74950SBarry Smith PetscInt *locrowlens,*procsnz = 0,jj,*mycols,*ibuf; 21701302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21711302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21721302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 217313f74950SBarry Smith int fd; 2174a30f8f8cSSatish Balay 2175a30f8f8cSSatish Balay PetscFunctionBegin; 2176b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay if (!rank) { 2181b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2183552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2184a30f8f8cSSatish Balay if (header[3] < 0) { 218529bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2186a30f8f8cSSatish Balay } 2187a30f8f8cSSatish Balay } 2188a30f8f8cSSatish Balay 2189*a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2191a30f8f8cSSatish Balay 219229bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2193a30f8f8cSSatish Balay 2194a30f8f8cSSatish Balay /* 2195a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2196a30f8f8cSSatish Balay divisible by the blocksize 2197a30f8f8cSSatish Balay */ 2198a30f8f8cSSatish Balay Mbs = M/bs; 2199a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2200a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2201a30f8f8cSSatish Balay else Mbs++; 2202a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2203b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2204a30f8f8cSSatish Balay } 2205a30f8f8cSSatish Balay 2206a30f8f8cSSatish Balay /* determine ownership of all rows */ 2207a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2208a30f8f8cSSatish Balay m = mbs*bs; 2209*a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay browners = rowners + size + 1; 2211a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay rowners[0] = 0; 2213a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2214a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2215a30f8f8cSSatish Balay rstart = rowners[rank]; 2216a30f8f8cSSatish Balay rend = rowners[rank+1]; 2217a30f8f8cSSatish Balay 2218a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22191302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay if (!rank) { 22211302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2224*a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2226*a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay } else { 2229*a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay } 2231a30f8f8cSSatish Balay 22320222edb1SHong Zhang if (!rank) { /* procs[0] */ 2233a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22341302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22351302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2236a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2237a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2238a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2239a30f8f8cSSatish Balay } 2240a30f8f8cSSatish Balay } 2241a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2242a30f8f8cSSatish Balay 2243a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2244a30f8f8cSSatish Balay maxnz = 0; 2245a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2246a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2247a30f8f8cSSatish Balay } 22481302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay 2250a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2251a30f8f8cSSatish Balay nz = procsnz[0]; 22521302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2253a30f8f8cSSatish Balay mycols = ibuf; 2254a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2255a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2257a30f8f8cSSatish Balay 2258a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2259a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2260a30f8f8cSSatish Balay nz = procsnz[i]; 2261a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2262*a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay } 2264a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2265a30f8f8cSSatish Balay if (size != 1) { 2266a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2267a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2269*a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay } 2271a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22720222edb1SHong Zhang } else { /* procs[i], i>0 */ 2273a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2274a30f8f8cSSatish Balay nz = 0; 2275a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2276a30f8f8cSSatish Balay nz += locrowlens[i]; 2277a30f8f8cSSatish Balay } 22781302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2279a30f8f8cSSatish Balay mycols = ibuf; 2280a30f8f8cSSatish Balay /* receive message of column indices*/ 2281*a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2282*a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 228329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2284a30f8f8cSSatish Balay } 2285a30f8f8cSSatish Balay 2286a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22871302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2288a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22891302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22901302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2291a30f8f8cSSatish Balay masked1 = mask + Mbs; 2292a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2293a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2294a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2295a30f8f8cSSatish Balay dcount = 0; 2296a30f8f8cSSatish Balay odcount = 0; 2297a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2298a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2299a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23000222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2301a30f8f8cSSatish Balay if (!mask[tmp]) { 2302a30f8f8cSSatish Balay mask[tmp] = 1; 23030222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23040222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2305a30f8f8cSSatish Balay } 2306a30f8f8cSSatish Balay } 2307a30f8f8cSSatish Balay rowcount++; 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay 23100222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23110222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2314a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2315a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2316a30f8f8cSSatish Balay } 2317a30f8f8cSSatish Balay 2318a30f8f8cSSatish Balay /* create our matrix */ 231922191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 232022191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232122191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2322273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2323a30f8f8cSSatish Balay 2324a30f8f8cSSatish Balay if (!rank) { 232587828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2326a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2327a30f8f8cSSatish Balay nz = procsnz[0]; 2328a30f8f8cSSatish Balay vals = buf; 2329a30f8f8cSSatish Balay mycols = ibuf; 2330a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2331a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2332a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2333a30f8f8cSSatish Balay 2334a30f8f8cSSatish Balay /* insert into matrix */ 2335a30f8f8cSSatish Balay jj = rstart*bs; 2336a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23377e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2338a30f8f8cSSatish Balay mycols += locrowlens[i]; 2339a30f8f8cSSatish Balay vals += locrowlens[i]; 2340a30f8f8cSSatish Balay jj++; 2341a30f8f8cSSatish Balay } 23427e06b45fSHong Zhang 2343a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2344a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2345a30f8f8cSSatish Balay nz = procsnz[i]; 2346a30f8f8cSSatish Balay vals = buf; 2347a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2348a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2349a30f8f8cSSatish Balay } 2350a30f8f8cSSatish Balay /* the last proc */ 2351a30f8f8cSSatish Balay if (size != 1){ 2352a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2353a30f8f8cSSatish Balay vals = buf; 2354a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2355a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2356a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2357a30f8f8cSSatish Balay } 2358a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23597e06b45fSHong Zhang 2360a30f8f8cSSatish Balay } else { 2361a30f8f8cSSatish Balay /* receive numeric values */ 236287828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2363a30f8f8cSSatish Balay 2364a30f8f8cSSatish Balay /* receive message of values*/ 2365a30f8f8cSSatish Balay vals = buf; 2366a30f8f8cSSatish Balay mycols = ibuf; 2367a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2368a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 236929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2370a30f8f8cSSatish Balay 2371a30f8f8cSSatish Balay /* insert into matrix */ 2372a30f8f8cSSatish Balay jj = rstart*bs; 2373a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2374a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2375a30f8f8cSSatish Balay mycols += locrowlens[i]; 2376a30f8f8cSSatish Balay vals += locrowlens[i]; 2377a30f8f8cSSatish Balay jj++; 2378a30f8f8cSSatish Balay } 2379a30f8f8cSSatish Balay } 23807e06b45fSHong Zhang 2381a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2382a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2383a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2385a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2386a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2387a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2388a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238922191285SKris Buschelman *newmat = A; 2390a30f8f8cSSatish Balay PetscFunctionReturn(0); 2391a30f8f8cSSatish Balay } 2392a30f8f8cSSatish Balay 23934a2ae208SSatish Balay #undef __FUNCT__ 23944a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2395a30f8f8cSSatish Balay /*@ 2396a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2397a30f8f8cSSatish Balay 2398a30f8f8cSSatish Balay Input Parameters: 2399a30f8f8cSSatish Balay . mat - the matrix 2400a30f8f8cSSatish Balay . fact - factor 2401a30f8f8cSSatish Balay 2402a30f8f8cSSatish Balay Collective on Mat 2403a30f8f8cSSatish Balay 2404a30f8f8cSSatish Balay Level: advanced 2405a30f8f8cSSatish Balay 2406a30f8f8cSSatish Balay Notes: 2407a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2408a30f8f8cSSatish Balay 2409a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2410a30f8f8cSSatish Balay 2411a30f8f8cSSatish Balay .seealso: MatSetOption() 2412a30f8f8cSSatish Balay @*/ 2413dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2414a30f8f8cSSatish Balay { 2415a30f8f8cSSatish Balay PetscFunctionBegin; 24161302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 241796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2418a30f8f8cSSatish Balay } 241924d5174aSHong Zhang 24204a2ae208SSatish Balay #undef __FUNCT__ 24214a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2422dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 242324d5174aSHong Zhang { 242424d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2425f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2426ca54ac64SHong Zhang PetscReal atmp; 242787828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2428dfbe8321SBarry Smith PetscErrorCode ierr; 24291302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24301302d50aSBarry Smith PetscMPIInt rank,size; 24311302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 243287828ca2SBarry Smith PetscScalar *va; 24338a1c53f2SBarry Smith MatScalar *ba; 2434f4c0e9e4SHong Zhang MPI_Status stat; 243524d5174aSHong Zhang 243624d5174aSHong Zhang PetscFunctionBegin; 2437d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24381ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2439f4c0e9e4SHong Zhang 244056faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 244156faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2442f4c0e9e4SHong Zhang 2443521d7252SBarry Smith bs = A->bs; 2444f4c0e9e4SHong Zhang mbs = a->mbs; 2445f4c0e9e4SHong Zhang Mbs = a->Mbs; 2446f4c0e9e4SHong Zhang ba = b->a; 2447f4c0e9e4SHong Zhang bi = b->i; 2448f4c0e9e4SHong Zhang bj = b->j; 2449f4c0e9e4SHong Zhang 2450f4c0e9e4SHong Zhang /* find ownerships */ 2451f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2452f4c0e9e4SHong Zhang 2453f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245482502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2455ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2456f4c0e9e4SHong Zhang 2457f4c0e9e4SHong Zhang /* row_max for B */ 2458b8475685SHong Zhang if (rank != size-1){ 2459f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2460f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2461f4c0e9e4SHong Zhang brow = bs*i; 2462f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2463f4c0e9e4SHong Zhang bcol = bs*(*bj); 2464f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2465ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2467f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2468f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2469ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2470ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2471f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2472f4c0e9e4SHong Zhang } 2473f4c0e9e4SHong Zhang } 2474f4c0e9e4SHong Zhang bj++; 2475f4c0e9e4SHong Zhang } 2476f4c0e9e4SHong Zhang } 2477f4c0e9e4SHong Zhang 2478f4c0e9e4SHong Zhang /* send values to its owners */ 2479f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2480f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2481ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 248256faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2483ca54ac64SHong Zhang } 2484f4c0e9e4SHong Zhang } 2485f4c0e9e4SHong Zhang 2486f4c0e9e4SHong Zhang /* receive values */ 2487ca54ac64SHong Zhang if (rank){ 2488f4c0e9e4SHong Zhang rvalues = work; 2489ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2490f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 249156faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2492f4c0e9e4SHong Zhang /* process values */ 2493f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2494ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2495f4c0e9e4SHong Zhang } 2496f4c0e9e4SHong Zhang } 2497ca54ac64SHong Zhang } 2498f4c0e9e4SHong Zhang 24991ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2500ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 250124d5174aSHong Zhang PetscFunctionReturn(0); 250224d5174aSHong Zhang } 25032798e883SHong Zhang 25042798e883SHong Zhang #undef __FUNCT__ 25052798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 25061302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25072798e883SHong Zhang { 25082798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2509dfbe8321SBarry Smith PetscErrorCode ierr; 2510521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2511ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2512ffe4fb16SHong Zhang Vec bb1; 2513ffe4fb16SHong Zhang 2514ffe4fb16SHong Zhang PetscFunctionBegin; 251577431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2516ffe4fb16SHong Zhang if (bs > 1) 2517ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2518ffe4fb16SHong Zhang 2519ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2520ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2521ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2522ffe4fb16SHong Zhang its--; 2523ffe4fb16SHong Zhang } 2524ffe4fb16SHong Zhang 2525ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2526ffe4fb16SHong Zhang while (its--){ 2527ffe4fb16SHong Zhang 2528ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2529ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2530ffe4fb16SHong Zhang 2531ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25321ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25331ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2534ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25351ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2536ffe4fb16SHong Zhang 2537ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2538ffe4fb16SHong Zhang 2539ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25401ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25411ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2542ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25431ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2544ffe4fb16SHong Zhang 2545ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2546ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2547ffe4fb16SHong Zhang 2548ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25491ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25501ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2551ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2552ffe4fb16SHong Zhang 2553ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2554ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2555ffe4fb16SHong Zhang 2556ffe4fb16SHong Zhang /* local diagonal sweep */ 2557ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang } 2559ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2560ffe4fb16SHong Zhang } else { 2561ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2562ffe4fb16SHong Zhang } 2563ffe4fb16SHong Zhang PetscFunctionReturn(0); 2564ffe4fb16SHong Zhang } 2565ffe4fb16SHong Zhang 2566ffe4fb16SHong Zhang #undef __FUNCT__ 2567ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25681302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2569ffe4fb16SHong Zhang { 2570ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2571dfbe8321SBarry Smith PetscErrorCode ierr; 2572d05c616dSSatish Balay PetscScalar mone=-1.0; 25732798e883SHong Zhang Vec lvec1,bb1; 25742798e883SHong Zhang 25752798e883SHong Zhang PetscFunctionBegin; 257677431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2577521d7252SBarry Smith if (matin->bs > 1) 25782798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25792798e883SHong Zhang 2580c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25812798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2582bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25832798e883SHong Zhang its--; 25842798e883SHong Zhang } 25852798e883SHong Zhang 25862798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25872798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25882798e883SHong Zhang while (its--){ 25892798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25902798e883SHong Zhang 25912798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25922798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25932798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25942798e883SHong Zhang 25952798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25962798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25972798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25982798e883SHong Zhang 25992798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 26002798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 26012798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26022798e883SHong Zhang 26032798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26042798e883SHong Zhang 2605c14dc6b6SHong Zhang /* diagonal sweep */ 2606bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26072798e883SHong Zhang } 26082798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26092798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2610c14dc6b6SHong Zhang } else { 2611c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2612c14dc6b6SHong Zhang } 26132798e883SHong Zhang PetscFunctionReturn(0); 26142798e883SHong Zhang } 26152798e883SHong Zhang 2616