173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 11a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 12a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 1387828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *); 1487828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode); 1587828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 36a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51a30f8f8cSSatish Balay int ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66a30f8f8cSSatish Balay int ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay /* 76a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 77a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 78a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 79a30f8f8cSSatish Balay length of colmap equals the global matrix length. 80a30f8f8cSSatish Balay */ 814a2ae208SSatish Balay #undef __FUNCT__ 824a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 83a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 84a30f8f8cSSatish Balay { 85a30f8f8cSSatish Balay PetscFunctionBegin; 8629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 88a30f8f8cSSatish Balay } 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define CHUNKSIZE 10 91a30f8f8cSSatish Balay 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 97a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto a_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11629bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 117a30f8f8cSSatish Balay if (nrow >= rmax) { \ 118a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 119a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 120a30f8f8cSSatish Balay MatScalar *new_a; \ 121a30f8f8cSSatish Balay \ 12229bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 123a30f8f8cSSatish Balay \ 124a30f8f8cSSatish Balay /* malloc new storage space */ \ 125a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12682502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 128a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 129a30f8f8cSSatish Balay \ 130a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 131a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 132a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 135a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13787828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 139a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay /* free up old matrix storage */ \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 143a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 144a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 145a30f8f8cSSatish Balay } \ 146a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 147a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 148a30f8f8cSSatish Balay \ 149a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 150a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 151b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 152a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 153a30f8f8cSSatish Balay a->reallocs++; \ 154a30f8f8cSSatish Balay a->s_nz++; \ 155a30f8f8cSSatish Balay } \ 156a30f8f8cSSatish Balay N = nrow++ - 1; \ 157a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 158a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 159a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 160a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 163a30f8f8cSSatish Balay rp[_i] = bcol; \ 164a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 165a30f8f8cSSatish Balay a_noinsert:; \ 166a30f8f8cSSatish Balay ailen[brow] = nrow; \ 167a30f8f8cSSatish Balay } 168a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 169a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 170a30f8f8cSSatish Balay { \ 171a30f8f8cSSatish Balay brow = row/bs; \ 172a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 173a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 174a30f8f8cSSatish Balay bcol = col/bs; \ 175a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 176a30f8f8cSSatish Balay low = 0; high = nrow; \ 177a30f8f8cSSatish Balay while (high-low > 3) { \ 178a30f8f8cSSatish Balay t = (low+high)/2; \ 179a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 180a30f8f8cSSatish Balay else low = t; \ 181a30f8f8cSSatish Balay } \ 182a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 183a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 184a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 185a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 186a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 187a30f8f8cSSatish Balay else *bap = value; \ 188a30f8f8cSSatish Balay goto b_noinsert; \ 189a30f8f8cSSatish Balay } \ 190a30f8f8cSSatish Balay } \ 191a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19229bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 193a30f8f8cSSatish Balay if (nrow >= rmax) { \ 194a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 195a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 196a30f8f8cSSatish Balay MatScalar *new_a; \ 197a30f8f8cSSatish Balay \ 19829bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 199a30f8f8cSSatish Balay \ 200a30f8f8cSSatish Balay /* malloc new storage space */ \ 201a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 204a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 205a30f8f8cSSatish Balay \ 206a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 207a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 208a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 211a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 215a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay /* free up old matrix storage */ \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 219a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 220a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 221a30f8f8cSSatish Balay } \ 222a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 223a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 224a30f8f8cSSatish Balay \ 225a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 226a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 227b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 228a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 229a30f8f8cSSatish Balay b->reallocs++; \ 230a30f8f8cSSatish Balay b->nz++; \ 231a30f8f8cSSatish Balay } \ 232a30f8f8cSSatish Balay N = nrow++ - 1; \ 233a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 234a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 235a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 236a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 237a30f8f8cSSatish Balay } \ 238a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 239a30f8f8cSSatish Balay rp[_i] = bcol; \ 240a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 241a30f8f8cSSatish Balay b_noinsert:; \ 242a30f8f8cSSatish Balay bilen[brow] = nrow; \ 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay #endif 245a30f8f8cSSatish Balay 246a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 24987828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 250a30f8f8cSSatish Balay { 251a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 252a30f8f8cSSatish Balay int ierr,i,N = m*n; 253a30f8f8cSSatish Balay MatScalar *vsingle; 254a30f8f8cSSatish Balay 255a30f8f8cSSatish Balay PetscFunctionBegin; 256a30f8f8cSSatish Balay if (N > b->setvalueslen) { 257a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 259a30f8f8cSSatish Balay b->setvalueslen = N; 260a30f8f8cSSatish Balay } 261a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 262a30f8f8cSSatish Balay 263a30f8f8cSSatish Balay for (i=0; i<N; i++) { 264a30f8f8cSSatish Balay vsingle[i] = v[i]; 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 267a30f8f8cSSatish Balay PetscFunctionReturn(0); 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 27287828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 273a30f8f8cSSatish Balay { 274a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 275a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 276a30f8f8cSSatish Balay MatScalar *vsingle; 277a30f8f8cSSatish Balay 278a30f8f8cSSatish Balay PetscFunctionBegin; 279a30f8f8cSSatish Balay if (N > b->setvalueslen) { 280a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 28182502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 282a30f8f8cSSatish Balay b->setvalueslen = N; 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 285a30f8f8cSSatish Balay for (i=0; i<N; i++) { 286a30f8f8cSSatish Balay vsingle[i] = v[i]; 287a30f8f8cSSatish Balay } 288a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 289a30f8f8cSSatish Balay PetscFunctionReturn(0); 290a30f8f8cSSatish Balay } 291a30f8f8cSSatish Balay 2924a2ae208SSatish Balay #undef __FUNCT__ 2934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 29487828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 295a30f8f8cSSatish Balay { 296a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 297a30f8f8cSSatish Balay int ierr,i,N = m*n; 298a30f8f8cSSatish Balay MatScalar *vsingle; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay PetscFunctionBegin; 30129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3024d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay 3054a2ae208SSatish Balay #undef __FUNCT__ 3064a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 30787828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 308a30f8f8cSSatish Balay { 309a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 310a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 311a30f8f8cSSatish Balay MatScalar *vsingle; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 31429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3154d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay #endif 318a30f8f8cSSatish Balay 319a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 320a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 321a30f8f8cSSatish Balay */ 3224a2ae208SSatish Balay #undef __FUNCT__ 3234a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 324a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 325a30f8f8cSSatish Balay { 326a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 327a30f8f8cSSatish Balay MatScalar value; 328b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 329a30f8f8cSSatish Balay int ierr,i,j,row,col; 330b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 331a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 332a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 333a30f8f8cSSatish Balay 334a30f8f8cSSatish Balay /* Some Variables required in the macro */ 335a30f8f8cSSatish Balay Mat A = baij->A; 336a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 337a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 338a30f8f8cSSatish Balay MatScalar *aa=a->a; 339a30f8f8cSSatish Balay 340a30f8f8cSSatish Balay Mat B = baij->B; 341a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 342a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 343a30f8f8cSSatish Balay MatScalar *ba=b->a; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 346a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 347a30f8f8cSSatish Balay MatScalar *ap,*bap; 348a30f8f8cSSatish Balay 349a30f8f8cSSatish Balay /* for stash */ 350f65c83cfSHong Zhang int n_loc, *in_loc=0; 351f65c83cfSHong Zhang MatScalar *v_loc=0; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay PetscFunctionBegin; 354a30f8f8cSSatish Balay 355a30f8f8cSSatish Balay if(!baij->donotstash){ 35682502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 360a30f8f8cSSatish Balay for (i=0; i<m; i++) { 361a30f8f8cSSatish Balay if (im[i] < 0) continue; 362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 363b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 364a30f8f8cSSatish Balay #endif 365a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 366a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 367a30f8f8cSSatish Balay for (j=0; j<n; j++) { 368f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 369a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 370a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 371a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 372a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 373a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 374a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 375a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 376a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 377a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 378b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 379a30f8f8cSSatish Balay #endif 380a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 381a30f8f8cSSatish Balay if (mat->was_assembled) { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 38771730473SSatish Balay col = col - 1; 388a30f8f8cSSatish Balay #else 38971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 392a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 393a30f8f8cSSatish Balay col = in[j]; 394a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 395a30f8f8cSSatish Balay B = baij->B; 396a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 397a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 398a30f8f8cSSatish Balay ba=b->a; 39971730473SSatish Balay } else col += in[j]%bs; 400a30f8f8cSSatish Balay } else col = in[j]; 401a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 402a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 403a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay } else { /* off processor entry */ 407a30f8f8cSSatish Balay if (!baij->donotstash) { 408a30f8f8cSSatish Balay n_loc = 0; 409a30f8f8cSSatish Balay for (j=0; j<n; j++){ 410f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 411a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 412a30f8f8cSSatish Balay if (roworiented) { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay n_loc++; 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay } 422a30f8f8cSSatish Balay } 423a30f8f8cSSatish Balay 424a30f8f8cSSatish Balay if(!baij->donotstash){ 425a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 426a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay PetscFunctionReturn(0); 429a30f8f8cSSatish Balay } 430a30f8f8cSSatish Balay 4314a2ae208SSatish Balay #undef __FUNCT__ 4324a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 433a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 434a30f8f8cSSatish Balay { 435a30f8f8cSSatish Balay PetscFunctionBegin; 43629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 438a30f8f8cSSatish Balay } 439a30f8f8cSSatish Balay 440a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 441a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 442a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 443a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4444a2ae208SSatish Balay #undef __FUNCT__ 4454a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 446a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 447a30f8f8cSSatish Balay { 448a30f8f8cSSatish Balay PetscFunctionBegin; 44929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 451a30f8f8cSSatish Balay } 452a30f8f8cSSatish Balay 4534a2ae208SSatish Balay #undef __FUNCT__ 4544a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 455a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 456a30f8f8cSSatish Balay { 457a30f8f8cSSatish Balay PetscFunctionBegin; 45829bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 460a30f8f8cSSatish Balay } 461a30f8f8cSSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 4634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 46487828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 465a30f8f8cSSatish Balay { 466f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 467a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 468a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 469a30f8f8cSSatish Balay 470a30f8f8cSSatish Balay PetscFunctionBegin; 471a30f8f8cSSatish Balay for (i=0; i<m; i++) { 47229bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 473b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 474a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 475a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 476a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47729bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 478b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 479a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 480a30f8f8cSSatish Balay col = idxn[j] - bscstart; 481c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 482a30f8f8cSSatish Balay } else { 483a30f8f8cSSatish Balay if (!baij->colmap) { 484a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 485a30f8f8cSSatish Balay } 486a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 487a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 488a30f8f8cSSatish Balay data --; 489a30f8f8cSSatish Balay #else 490a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 491a30f8f8cSSatish Balay #endif 492a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 493a30f8f8cSSatish Balay else { 494a30f8f8cSSatish Balay col = data + idxn[j]%bs; 495c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay } 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay } else { 50029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 501a30f8f8cSSatish Balay } 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay PetscFunctionReturn(0); 504a30f8f8cSSatish Balay } 505a30f8f8cSSatish Balay 5064a2ae208SSatish Balay #undef __FUNCT__ 5074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 508a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 509a30f8f8cSSatish Balay { 510a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 511bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 512bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 513a30f8f8cSSatish Balay int ierr; 514a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 515a30f8f8cSSatish Balay 516a30f8f8cSSatish Balay PetscFunctionBegin; 517a30f8f8cSSatish Balay if (baij->size == 1) { 518a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 519a30f8f8cSSatish Balay } else { 520a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 521f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 522a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 523a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 524a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 525a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 526a30f8f8cSSatish Balay /* 527a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 528a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 529a30f8f8cSSatish Balay */ 530d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 531a30f8f8cSSatish Balay /* 532a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 533a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 536a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 537a30f8f8cSSatish Balay } else { 53829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay PetscFunctionReturn(0); 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay 544a30f8f8cSSatish Balay /* 545a30f8f8cSSatish Balay Creates the hash table, and sets the table 546a30f8f8cSSatish Balay This table is created only once. 547a30f8f8cSSatish Balay If new entried need to be added to the matrix 548a30f8f8cSSatish Balay then the hash table has to be destroyed and 549a30f8f8cSSatish Balay recreated. 550a30f8f8cSSatish Balay */ 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 553a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay PetscFunctionBegin; 55629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 558a30f8f8cSSatish Balay } 559a30f8f8cSSatish Balay 5604a2ae208SSatish Balay #undef __FUNCT__ 5614a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 562a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 563a30f8f8cSSatish Balay { 564a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 565a30f8f8cSSatish Balay int ierr,nstash,reallocs; 566a30f8f8cSSatish Balay InsertMode addv; 567a30f8f8cSSatish Balay 568a30f8f8cSSatish Balay PetscFunctionBegin; 569a30f8f8cSSatish Balay if (baij->donotstash) { 570a30f8f8cSSatish Balay PetscFunctionReturn(0); 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 574a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 575a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 577a30f8f8cSSatish Balay } 578a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 579a30f8f8cSSatish Balay 580a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 581a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 582a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 583b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 584a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 585b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 591a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 594a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 595a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 596a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 597a30f8f8cSSatish Balay int *row,*col,other_disassembled; 598a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 599a30f8f8cSSatish Balay MatScalar *val; 600a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 601a30f8f8cSSatish Balay 602a30f8f8cSSatish Balay PetscFunctionBegin; 603a30f8f8cSSatish Balay 604a30f8f8cSSatish Balay if (!baij->donotstash) { 605a30f8f8cSSatish Balay while (1) { 606a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 607a30f8f8cSSatish Balay /* 608a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 609a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 610a30f8f8cSSatish Balay */ 611a30f8f8cSSatish Balay if (!flg) break; 612a30f8f8cSSatish Balay 613a30f8f8cSSatish Balay for (i=0; i<n;) { 614a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 615a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 616a30f8f8cSSatish Balay if (j < n) ncols = j-i; 617a30f8f8cSSatish Balay else ncols = n-i; 618a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 619a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 620a30f8f8cSSatish Balay i = j; 621a30f8f8cSSatish Balay } 622a30f8f8cSSatish Balay } 623a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 624a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 625a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 626a30f8f8cSSatish Balay restore the original flags */ 627a30f8f8cSSatish Balay r1 = baij->roworiented; 628a30f8f8cSSatish Balay r2 = a->roworiented; 629a30f8f8cSSatish Balay r3 = b->roworiented; 630a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 631a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 632a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 633a30f8f8cSSatish Balay while (1) { 634a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 635a30f8f8cSSatish Balay if (!flg) break; 636a30f8f8cSSatish Balay 637a30f8f8cSSatish Balay for (i=0; i<n;) { 638a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 639a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 640a30f8f8cSSatish Balay if (j < n) ncols = j-i; 641a30f8f8cSSatish Balay else ncols = n-i; 642a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 643a30f8f8cSSatish Balay i = j; 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 647a30f8f8cSSatish Balay baij->roworiented = r1; 648a30f8f8cSSatish Balay a->roworiented = r2; 649a30f8f8cSSatish Balay b->roworiented = r3; 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 653a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 654a30f8f8cSSatish Balay 655a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 656a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 657a30f8f8cSSatish Balay /* 658a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 659a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 660a30f8f8cSSatish Balay */ 661a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 662a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 663a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 664c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay 668a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 66940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 672a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 675a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 676f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 677a30f8f8cSSatish Balay baij->ht_total_ct = 0; 678a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 679a30f8f8cSSatish Balay } 680a30f8f8cSSatish Balay #endif 681a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 682c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 683a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 684a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay 687a30f8f8cSSatish Balay if (baij->rowvalues) { 688a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 689a30f8f8cSSatish Balay baij->rowvalues = 0; 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay PetscFunctionReturn(0); 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay 6944a2ae208SSatish Balay #undef __FUNCT__ 6954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 696b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 697a30f8f8cSSatish Balay { 698a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 699fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 700a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 701b0a32e0cSBarry Smith PetscViewer sviewer; 702f3ef73ceSBarry Smith PetscViewerFormat format; 703a30f8f8cSSatish Balay 704a30f8f8cSSatish Balay PetscFunctionBegin; 705b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 706fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 707a30f8f8cSSatish Balay if (isascii) { 708b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 709fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_INFO_LONG) { 710a30f8f8cSSatish Balay MatInfo info; 711a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 713b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 714b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 715a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 716a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 717b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 719b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 720b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 722a30f8f8cSSatish Balay PetscFunctionReturn(0); 723fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 724b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 725a30f8f8cSSatish Balay PetscFunctionReturn(0); 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay } 728a30f8f8cSSatish Balay 729a30f8f8cSSatish Balay if (isdraw) { 730b0a32e0cSBarry Smith PetscDraw draw; 731a30f8f8cSSatish Balay PetscTruth isnull; 732b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 733b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 734a30f8f8cSSatish Balay } 735a30f8f8cSSatish Balay 736a30f8f8cSSatish Balay if (size == 1) { 737e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 738a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 739a30f8f8cSSatish Balay } else { 740a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 741a30f8f8cSSatish Balay Mat A; 74265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 744b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 745a30f8f8cSSatish Balay MatScalar *a; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay if (!rank) { 748bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 749a30f8f8cSSatish Balay } else { 750f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 751a30f8f8cSSatish Balay } 752b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 753a30f8f8cSSatish Balay 754a30f8f8cSSatish Balay /* copy over the A part */ 75565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 756a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 75782502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 758a30f8f8cSSatish Balay 759a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 760a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 761a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 762a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 763a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 764a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 765a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 766a30f8f8cSSatish Balay col++; a += bs; 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay /* copy over the B part */ 77165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 773a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 774a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 775a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 776a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 777a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 778a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 779a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 780a30f8f8cSSatish Balay col++; a += bs; 781a30f8f8cSSatish Balay } 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 786a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 787a30f8f8cSSatish Balay /* 788a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 789b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 790a30f8f8cSSatish Balay */ 791b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79265d70643SHong Zhang if (!rank) { 793e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 794a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 795a30f8f8cSSatish Balay } 796b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 797a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay PetscFunctionReturn(0); 800a30f8f8cSSatish Balay } 801a30f8f8cSSatish Balay 8024a2ae208SSatish Balay #undef __FUNCT__ 8034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 804b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 805a30f8f8cSSatish Balay { 806a30f8f8cSSatish Balay int ierr; 807a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay PetscFunctionBegin; 810b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 811fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 812b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 813fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 814a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 815a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 816a30f8f8cSSatish Balay } else { 81729bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay PetscFunctionReturn(0); 820a30f8f8cSSatish Balay } 821a30f8f8cSSatish Balay 8224a2ae208SSatish Balay #undef __FUNCT__ 8234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 824a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 825a30f8f8cSSatish Balay { 826a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 827a30f8f8cSSatish Balay int ierr; 828a30f8f8cSSatish Balay 829a30f8f8cSSatish Balay PetscFunctionBegin; 830a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 831b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 832a30f8f8cSSatish Balay #endif 833a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 834a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 835a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 836a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 837a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 838a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 839a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 840a30f8f8cSSatish Balay #else 841a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 842a30f8f8cSSatish Balay #endif 843a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 844a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 845a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 84640781036SHong Zhang if (baij->slvec0) { 84740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 84840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 84940781036SHong Zhang } 85040781036SHong Zhang if (baij->slvec1) { 85140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 85240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 85340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 85440781036SHong Zhang } 85540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 856a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 857a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 858a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 859a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 860a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 861a30f8f8cSSatish Balay #endif 862a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 863a30f8f8cSSatish Balay PetscFunctionReturn(0); 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay 8664a2ae208SSatish Balay #undef __FUNCT__ 867*a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 868*a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 869*a9d4b620SHong Zhang { 870*a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 871*a9d4b620SHong Zhang int ierr,i,nt,mbs=a->mbs,bs=a->bs; 872*a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 873*a9d4b620SHong Zhang 874*a9d4b620SHong Zhang PetscFunctionBegin; 875*a9d4b620SHong Zhang /* 876*a9d4b620SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD," _1comm is called ...\n"); 877*a9d4b620SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 878*a9d4b620SHong Zhang */ 879*a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 880*a9d4b620SHong Zhang if (nt != A->n) { 881*a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 882*a9d4b620SHong Zhang } 883*a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 884*a9d4b620SHong Zhang if (nt != A->m) { 885*a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 886*a9d4b620SHong Zhang } 887*a9d4b620SHong Zhang 888*a9d4b620SHong Zhang /* diagonal part */ 889*a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 890*a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 891*a9d4b620SHong Zhang 892*a9d4b620SHong Zhang /* subdiagonal part */ 893*a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 894*a9d4b620SHong Zhang 895*a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 896*a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 897*a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 898*a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 899*a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 900*a9d4b620SHong Zhang 901*a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 902*a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 903*a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 904*a9d4b620SHong Zhang 905*a9d4b620SHong Zhang /* supperdiagonal part */ 906*a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 907*a9d4b620SHong Zhang 908*a9d4b620SHong Zhang PetscFunctionReturn(0); 909*a9d4b620SHong Zhang } 910*a9d4b620SHong Zhang 911*a9d4b620SHong Zhang #undef __FUNCT__ 91240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 91340781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 914a30f8f8cSSatish Balay { 915a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 916a30f8f8cSSatish Balay int ierr,nt; 917a30f8f8cSSatish Balay 918a30f8f8cSSatish Balay PetscFunctionBegin; 919a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 920b5df2d14SHong Zhang if (nt != A->n) { 92129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 922a30f8f8cSSatish Balay } 923a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 924b5df2d14SHong Zhang if (nt != A->m) { 92529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 926a30f8f8cSSatish Balay } 92765d70643SHong Zhang 928b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 929b941877fSHong Zhang /* do diagonal part */ 930b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 931b941877fSHong Zhang /* do supperdiagonal part */ 932b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 933b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 934b941877fSHong Zhang /* do subdiagonal part */ 935b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 936b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 937b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 93865d70643SHong Zhang 939a30f8f8cSSatish Balay PetscFunctionReturn(0); 940a30f8f8cSSatish Balay } 941a30f8f8cSSatish Balay 9424a2ae208SSatish Balay #undef __FUNCT__ 9434a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 944a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 945a30f8f8cSSatish Balay { 946de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 947*a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 948*a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 949*a9d4b620SHong Zhang 950*a9d4b620SHong Zhang PetscFunctionBegin; 951*a9d4b620SHong Zhang /* 952*a9d4b620SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD," MatMultAdd is called ...\n"); 953*a9d4b620SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 954*a9d4b620SHong Zhang */ 955*a9d4b620SHong Zhang /* diagonal part */ 956*a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 957*a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 958*a9d4b620SHong Zhang 959*a9d4b620SHong Zhang /* subdiagonal part */ 960*a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 961*a9d4b620SHong Zhang 962*a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 963*a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 964*a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 965*a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 966*a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 967*a9d4b620SHong Zhang 968*a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 969*a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 970*a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 971*a9d4b620SHong Zhang 972*a9d4b620SHong Zhang /* supperdiagonal part */ 973*a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 974*a9d4b620SHong Zhang 975*a9d4b620SHong Zhang PetscFunctionReturn(0); 976*a9d4b620SHong Zhang } 977*a9d4b620SHong Zhang 978*a9d4b620SHong Zhang #undef __FUNCT__ 979*a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 980*a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 981*a9d4b620SHong Zhang { 982*a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 983aa482183SHong Zhang int ierr; 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay PetscFunctionBegin; 986b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 987b941877fSHong Zhang /* do diagonal part */ 988b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 989b941877fSHong Zhang /* do supperdiagonal part */ 990b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 991de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 992de8b6608SHong Zhang 993b941877fSHong Zhang /* do subdiagonal part */ 994a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 995a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 996a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 997aa482183SHong Zhang 998a30f8f8cSSatish Balay PetscFunctionReturn(0); 999a30f8f8cSSatish Balay } 1000a30f8f8cSSatish Balay 10014a2ae208SSatish Balay #undef __FUNCT__ 10024a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1003a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1004a30f8f8cSSatish Balay { 1005a30f8f8cSSatish Balay PetscFunctionBegin; 100629bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 100796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1008a30f8f8cSSatish Balay } 1009a30f8f8cSSatish Balay 10104a2ae208SSatish Balay #undef __FUNCT__ 10114a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1012a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1013a30f8f8cSSatish Balay { 1014a30f8f8cSSatish Balay PetscFunctionBegin; 101529bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 101696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1017a30f8f8cSSatish Balay } 1018a30f8f8cSSatish Balay 1019a30f8f8cSSatish Balay /* 1020a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1021a30f8f8cSSatish Balay diagonal block 1022a30f8f8cSSatish Balay */ 10234a2ae208SSatish Balay #undef __FUNCT__ 10244a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1025a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1026a30f8f8cSSatish Balay { 1027a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1028a30f8f8cSSatish Balay int ierr; 1029a30f8f8cSSatish Balay 1030a30f8f8cSSatish Balay PetscFunctionBegin; 103129bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1032a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1033a30f8f8cSSatish Balay PetscFunctionReturn(0); 1034a30f8f8cSSatish Balay } 1035a30f8f8cSSatish Balay 10364a2ae208SSatish Balay #undef __FUNCT__ 10374a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 103887828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A) 1039a30f8f8cSSatish Balay { 1040a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1041a30f8f8cSSatish Balay int ierr; 1042a30f8f8cSSatish Balay 1043a30f8f8cSSatish Balay PetscFunctionBegin; 1044a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1045a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1046a30f8f8cSSatish Balay PetscFunctionReturn(0); 1047a30f8f8cSSatish Balay } 1048a30f8f8cSSatish Balay 10494a2ae208SSatish Balay #undef __FUNCT__ 10504a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 105187828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1052a30f8f8cSSatish Balay { 1053a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 105487828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1055a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1056a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1057a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1058a30f8f8cSSatish Balay 1059a30f8f8cSSatish Balay PetscFunctionBegin; 106029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1061a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1062a30f8f8cSSatish Balay 1063a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1064a30f8f8cSSatish Balay /* 1065a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1066a30f8f8cSSatish Balay */ 1067a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1068a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1069a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1070a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1071a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1072a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1073a30f8f8cSSatish Balay } 107487828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1075a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1076a30f8f8cSSatish Balay } 1077a30f8f8cSSatish Balay 107829bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1079a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1080a30f8f8cSSatish Balay 1081a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1082a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1083a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1084a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1085a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1086a30f8f8cSSatish Balay nztot = nzA + nzB; 1087a30f8f8cSSatish Balay 1088a30f8f8cSSatish Balay cmap = mat->garray; 1089a30f8f8cSSatish Balay if (v || idx) { 1090a30f8f8cSSatish Balay if (nztot) { 1091a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1092a30f8f8cSSatish Balay int imark = -1; 1093a30f8f8cSSatish Balay if (v) { 1094a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1095a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1096a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1097a30f8f8cSSatish Balay else break; 1098a30f8f8cSSatish Balay } 1099a30f8f8cSSatish Balay imark = i; 1100a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1101a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1102a30f8f8cSSatish Balay } 1103a30f8f8cSSatish Balay if (idx) { 1104a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1105a30f8f8cSSatish Balay if (imark > -1) { 1106a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1107a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1108a30f8f8cSSatish Balay } 1109a30f8f8cSSatish Balay } else { 1110a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1111a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1112a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1113a30f8f8cSSatish Balay else break; 1114a30f8f8cSSatish Balay } 1115a30f8f8cSSatish Balay imark = i; 1116a30f8f8cSSatish Balay } 1117a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1118a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1119a30f8f8cSSatish Balay } 1120a30f8f8cSSatish Balay } else { 1121a30f8f8cSSatish Balay if (idx) *idx = 0; 1122a30f8f8cSSatish Balay if (v) *v = 0; 1123a30f8f8cSSatish Balay } 1124a30f8f8cSSatish Balay } 1125a30f8f8cSSatish Balay *nz = nztot; 1126a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1127a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1128a30f8f8cSSatish Balay PetscFunctionReturn(0); 1129a30f8f8cSSatish Balay } 1130a30f8f8cSSatish Balay 11314a2ae208SSatish Balay #undef __FUNCT__ 11324a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 113387828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1134a30f8f8cSSatish Balay { 1135a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1136a30f8f8cSSatish Balay 1137a30f8f8cSSatish Balay PetscFunctionBegin; 1138a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 113929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1140a30f8f8cSSatish Balay } 1141a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1142a30f8f8cSSatish Balay PetscFunctionReturn(0); 1143a30f8f8cSSatish Balay } 1144a30f8f8cSSatish Balay 11454a2ae208SSatish Balay #undef __FUNCT__ 11464a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1147a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1148a30f8f8cSSatish Balay { 1149a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1150a30f8f8cSSatish Balay 1151a30f8f8cSSatish Balay PetscFunctionBegin; 1152a30f8f8cSSatish Balay *bs = baij->bs; 1153a30f8f8cSSatish Balay PetscFunctionReturn(0); 1154a30f8f8cSSatish Balay } 1155a30f8f8cSSatish Balay 11564a2ae208SSatish Balay #undef __FUNCT__ 11574a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1158a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1159a30f8f8cSSatish Balay { 1160a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1161a30f8f8cSSatish Balay int ierr; 1162a30f8f8cSSatish Balay 1163a30f8f8cSSatish Balay PetscFunctionBegin; 1164a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1165a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1166a30f8f8cSSatish Balay PetscFunctionReturn(0); 1167a30f8f8cSSatish Balay } 1168a30f8f8cSSatish Balay 11694a2ae208SSatish Balay #undef __FUNCT__ 11704a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1171a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1172a30f8f8cSSatish Balay { 1173a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1174a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1175a30f8f8cSSatish Balay int ierr; 1176a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1177a30f8f8cSSatish Balay 1178a30f8f8cSSatish Balay PetscFunctionBegin; 1179f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1180a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1181a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1182a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1183a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1184a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1185a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1186a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1187a30f8f8cSSatish Balay info->nz_used = isend[0]; 1188a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1189a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1190a30f8f8cSSatish Balay info->memory = isend[3]; 1191a30f8f8cSSatish Balay info->mallocs = isend[4]; 1192a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1193d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1194a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1195a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1196a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1197a30f8f8cSSatish Balay info->memory = irecv[3]; 1198a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1199a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1200d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1201a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1202a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1203a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1204a30f8f8cSSatish Balay info->memory = irecv[3]; 1205a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1206a30f8f8cSSatish Balay } else { 120729bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1208a30f8f8cSSatish Balay } 1209f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1210f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1211f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1212f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1213a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1214a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1215a30f8f8cSSatish Balay info->factor_mallocs = 0; 1216a30f8f8cSSatish Balay PetscFunctionReturn(0); 1217a30f8f8cSSatish Balay } 1218a30f8f8cSSatish Balay 12194a2ae208SSatish Balay #undef __FUNCT__ 12204a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1221a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1222a30f8f8cSSatish Balay { 1223a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1224a30f8f8cSSatish Balay int ierr; 1225a30f8f8cSSatish Balay 1226a30f8f8cSSatish Balay PetscFunctionBegin; 1227e98b92d7SKris Buschelman switch (op) { 1228e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1229e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1230e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1231e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1232e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1233e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1234e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1235a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1236a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1237e98b92d7SKris Buschelman break; 1238e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1239a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1240a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1241a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1242e98b92d7SKris Buschelman break; 1243e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1244e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1245e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1246d03495bdSKris Buschelman case MAT_USE_SINGLE_PRECISION_SOLVES: 1247b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1248e98b92d7SKris Buschelman break; 1249e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1250a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1251a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1252a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1253e98b92d7SKris Buschelman break; 1254e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1255a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1256e98b92d7SKris Buschelman break; 1257e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 125829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1259e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1260a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1261e98b92d7SKris Buschelman break; 1262e98b92d7SKris Buschelman default: 126329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1264a30f8f8cSSatish Balay } 1265a30f8f8cSSatish Balay PetscFunctionReturn(0); 1266a30f8f8cSSatish Balay } 1267a30f8f8cSSatish Balay 12684a2ae208SSatish Balay #undef __FUNCT__ 12694a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPISBAIJ(" 1270a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1271a30f8f8cSSatish Balay { 1272a30f8f8cSSatish Balay PetscFunctionBegin; 127329bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. MatTranspose() should not be called"); 127496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1275a30f8f8cSSatish Balay } 1276a30f8f8cSSatish Balay 12774a2ae208SSatish Balay #undef __FUNCT__ 12784a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1279a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1280a30f8f8cSSatish Balay { 1281a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1282a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1283a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1284a30f8f8cSSatish Balay 1285a30f8f8cSSatish Balay PetscFunctionBegin; 1286a30f8f8cSSatish Balay if (ll != rr) { 128729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1288a30f8f8cSSatish Balay } 1289a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1290a30f8f8cSSatish Balay if (rr) { 1291a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 129229bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1293a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1294a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1295a30f8f8cSSatish Balay /*} if (ll) { */ 1296a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 129729bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1298a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1299a30f8f8cSSatish Balay /* } */ 1300a30f8f8cSSatish Balay /* scale the diagonal block */ 1301a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay 1303a30f8f8cSSatish Balay /* if (rr) { */ 1304a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1305a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay } 1308a30f8f8cSSatish Balay 1309a30f8f8cSSatish Balay PetscFunctionReturn(0); 1310a30f8f8cSSatish Balay } 1311a30f8f8cSSatish Balay 13124a2ae208SSatish Balay #undef __FUNCT__ 13134a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 131487828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag) 1315a30f8f8cSSatish Balay { 1316a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1317a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 131835d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 1319a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1320a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1321a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1322a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1323a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1324a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1325a30f8f8cSSatish Balay IS istmp; 132635d8aa7fSBarry Smith PetscTruth found; 1327a30f8f8cSSatish Balay 1328a30f8f8cSSatish Balay PetscFunctionBegin; 1329a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1330a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1331a30f8f8cSSatish Balay 1332a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 133382502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1334a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1335a30f8f8cSSatish Balay procs = nprocs + size; 1336b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 1337a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1338a30f8f8cSSatish Balay idx = rows[i]; 133935d8aa7fSBarry Smith found = PETSC_FALSE; 1340a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1341a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 134235d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 1343a30f8f8cSSatish Balay } 1344a30f8f8cSSatish Balay } 134529bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1346a30f8f8cSSatish Balay } 1347a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1348a30f8f8cSSatish Balay 1349a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 135082502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 1351a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1352a30f8f8cSSatish Balay nmax = work[rank]; 1353a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1354a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1355a30f8f8cSSatish Balay 1356a30f8f8cSSatish Balay /* post receives: */ 1357b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1358b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 1359a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1360a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1361a30f8f8cSSatish Balay } 1362a30f8f8cSSatish Balay 1363a30f8f8cSSatish Balay /* do sends: 1364a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1365a30f8f8cSSatish Balay the ith processor 1366a30f8f8cSSatish Balay */ 1367b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1368b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1369b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 1370a30f8f8cSSatish Balay starts[0] = 0; 1371a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1372a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1373a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1374a30f8f8cSSatish Balay } 1375a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1376a30f8f8cSSatish Balay 1377a30f8f8cSSatish Balay starts[0] = 0; 1378a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1379a30f8f8cSSatish Balay count = 0; 1380a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1381a30f8f8cSSatish Balay if (procs[i]) { 1382a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay } 1384a30f8f8cSSatish Balay } 1385a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1386a30f8f8cSSatish Balay 1387a30f8f8cSSatish Balay base = owners[rank]*bs; 1388a30f8f8cSSatish Balay 1389a30f8f8cSSatish Balay /* wait on receives */ 1390b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 1391a30f8f8cSSatish Balay source = lens + nrecvs; 1392a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1393a30f8f8cSSatish Balay while (count) { 1394a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay /* unpack receives into our local space */ 1396a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1397a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1398a30f8f8cSSatish Balay lens[imdex] = n; 1399a30f8f8cSSatish Balay slen += n; 1400a30f8f8cSSatish Balay count--; 1401a30f8f8cSSatish Balay } 1402a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1403a30f8f8cSSatish Balay 1404a30f8f8cSSatish Balay /* move the data into the send scatter */ 1405b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 1406a30f8f8cSSatish Balay count = 0; 1407a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1408a30f8f8cSSatish Balay values = rvalues + i*nmax; 1409a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1410a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1411a30f8f8cSSatish Balay } 1412a30f8f8cSSatish Balay } 1413a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1414a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1415a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1416a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1417a30f8f8cSSatish Balay 1418a30f8f8cSSatish Balay /* actually zap the local rows */ 1419a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1420b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1421a30f8f8cSSatish Balay 1422a30f8f8cSSatish Balay /* 1423a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1424a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1425a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1426a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1427a30f8f8cSSatish Balay 1428a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1429a30f8f8cSSatish Balay */ 1430a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1431ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1432a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1433a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1434a30f8f8cSSatish Balay } else if (diag) { 1435a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1436a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 143729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1438a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1439a30f8f8cSSatish Balay } 1440a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1441a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1442a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1443a30f8f8cSSatish Balay } 1444a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1445a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1446a30f8f8cSSatish Balay } else { 1447a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1448a30f8f8cSSatish Balay } 1449a30f8f8cSSatish Balay 1450a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1451a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1452a30f8f8cSSatish Balay 1453a30f8f8cSSatish Balay /* wait on sends */ 1454a30f8f8cSSatish Balay if (nsends) { 145582502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1456a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1457a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1458a30f8f8cSSatish Balay } 1459a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1460a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1461a30f8f8cSSatish Balay 1462a30f8f8cSSatish Balay PetscFunctionReturn(0); 1463a30f8f8cSSatish Balay } 1464a30f8f8cSSatish Balay 14654a2ae208SSatish Balay #undef __FUNCT__ 14664a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1467a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1468a30f8f8cSSatish Balay { 1469a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1470a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1471a30f8f8cSSatish Balay static int called = 0; 1472a30f8f8cSSatish Balay int ierr; 1473a30f8f8cSSatish Balay 1474a30f8f8cSSatish Balay PetscFunctionBegin; 1475a30f8f8cSSatish Balay if (!a->rank) { 1476a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1477a30f8f8cSSatish Balay } 1478a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1479a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1480a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1481a30f8f8cSSatish Balay PetscFunctionReturn(0); 1482a30f8f8cSSatish Balay } 1483a30f8f8cSSatish Balay 14844a2ae208SSatish Balay #undef __FUNCT__ 14854a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1486a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1487a30f8f8cSSatish Balay { 1488f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1489a30f8f8cSSatish Balay int ierr; 1490a30f8f8cSSatish Balay 1491a30f8f8cSSatish Balay PetscFunctionBegin; 1492a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1493a30f8f8cSSatish Balay PetscFunctionReturn(0); 1494a30f8f8cSSatish Balay } 1495a30f8f8cSSatish Balay 1496a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1497a30f8f8cSSatish Balay 14984a2ae208SSatish Balay #undef __FUNCT__ 14994a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1500a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1501a30f8f8cSSatish Balay { 1502a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1503a30f8f8cSSatish Balay Mat a,b,c,d; 1504a30f8f8cSSatish Balay PetscTruth flg; 1505a30f8f8cSSatish Balay int ierr; 1506a30f8f8cSSatish Balay 1507a30f8f8cSSatish Balay PetscFunctionBegin; 1508b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1509b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1510a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1511a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1512a30f8f8cSSatish Balay 1513a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1514a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1515a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1516a30f8f8cSSatish Balay } 1517a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1518a30f8f8cSSatish Balay PetscFunctionReturn(0); 1519a30f8f8cSSatish Balay } 1520a30f8f8cSSatish Balay 15214a2ae208SSatish Balay #undef __FUNCT__ 15224a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1523273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1524273d9f13SBarry Smith { 1525273d9f13SBarry Smith int ierr; 1526273d9f13SBarry Smith 1527273d9f13SBarry Smith PetscFunctionBegin; 1528273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1529273d9f13SBarry Smith PetscFunctionReturn(0); 1530273d9f13SBarry Smith } 1531a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1532a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1533a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1534a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1535a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1536*a9d4b620SHong Zhang MatMult_MPISBAIJ, 1537a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1538a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1539a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 15462798e883SHong Zhang MatRelax_MPISBAIJ, 1547a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1548a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1549a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1550a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1551a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1552a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1553a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1554a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1555a30f8f8cSSatish Balay 0, 1556a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1557a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1558a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1559a30f8f8cSSatish Balay 0, 1560a30f8f8cSSatish Balay 0, 1561a30f8f8cSSatish Balay 0, 1562a30f8f8cSSatish Balay 0, 1563273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1564b5df2d14SHong Zhang 0, 1565a30f8f8cSSatish Balay 0, 1566a30f8f8cSSatish Balay 0, 1567a30f8f8cSSatish Balay 0, 1568a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1569a30f8f8cSSatish Balay 0, 1570a30f8f8cSSatish Balay 0, 1571a30f8f8cSSatish Balay 0, 1572a30f8f8cSSatish Balay 0, 1573a30f8f8cSSatish Balay 0, 1574a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1575a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1576a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1577a30f8f8cSSatish Balay 0, 1578a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1579a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1580a30f8f8cSSatish Balay 0, 1581a30f8f8cSSatish Balay 0, 1582a30f8f8cSSatish Balay 0, 1583a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1584a30f8f8cSSatish Balay 0, 1585a30f8f8cSSatish Balay 0, 1586a30f8f8cSSatish Balay 0, 1587a30f8f8cSSatish Balay 0, 1588a30f8f8cSSatish Balay 0, 1589a30f8f8cSSatish Balay 0, 1590a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1591a30f8f8cSSatish Balay 0, 1592a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1593a30f8f8cSSatish Balay 0, 1594a30f8f8cSSatish Balay 0, 1595a30f8f8cSSatish Balay 0, 15968a124369SBarry Smith MatGetPetscMaps_Petsc, 159724d5174aSHong Zhang 0, 159824d5174aSHong Zhang 0, 159924d5174aSHong Zhang 0, 160024d5174aSHong Zhang 0, 160124d5174aSHong Zhang 0, 160224d5174aSHong Zhang 0, 160324d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1604a30f8f8cSSatish Balay 1605a30f8f8cSSatish Balay 1606a30f8f8cSSatish Balay EXTERN_C_BEGIN 16074a2ae208SSatish Balay #undef __FUNCT__ 16084a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1609a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1610a30f8f8cSSatish Balay { 1611a30f8f8cSSatish Balay PetscFunctionBegin; 1612a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1613a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1614a30f8f8cSSatish Balay PetscFunctionReturn(0); 1615a30f8f8cSSatish Balay } 1616a30f8f8cSSatish Balay EXTERN_C_END 1617a30f8f8cSSatish Balay 1618273d9f13SBarry Smith EXTERN_C_BEGIN 16194a2ae208SSatish Balay #undef __FUNCT__ 16204a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1621b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1622b5df2d14SHong Zhang { 1623b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1624ca54ac64SHong Zhang int ierr; 1625b5df2d14SHong Zhang PetscTruth flg; 1626b5df2d14SHong Zhang 1627b5df2d14SHong Zhang PetscFunctionBegin; 1628b5df2d14SHong Zhang 1629b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1630b0a32e0cSBarry Smith B->data = (void*)b; 1631b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1632b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1633b5df2d14SHong Zhang 1634b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1635b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1636b5df2d14SHong Zhang B->mapping = 0; 1637b5df2d14SHong Zhang B->factor = 0; 1638b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1639b5df2d14SHong Zhang 1640b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1641b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1642b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1643b5df2d14SHong Zhang 1644b5df2d14SHong Zhang /* build local table of row and column ownerships */ 164582502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1646273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1647273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1648b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1649b5df2d14SHong Zhang 1650b5df2d14SHong Zhang /* build cache for off array entries formed */ 1651b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1652b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1653b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1654b5df2d14SHong Zhang b->garray = PETSC_NULL; 1655b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1656b5df2d14SHong Zhang 1657f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1658b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 165964a35ccbSBarry Smith b->setvalueslen = 0; 1660b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1661b5df2d14SHong Zhang #endif 1662b5df2d14SHong Zhang 1663b5df2d14SHong Zhang /* stuff used in block assembly */ 1664b5df2d14SHong Zhang b->barray = 0; 1665b5df2d14SHong Zhang 1666b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1667b5df2d14SHong Zhang b->lvec = 0; 1668b5df2d14SHong Zhang b->Mvctx = 0; 166940781036SHong Zhang b->slvec0 = 0; 167040781036SHong Zhang b->slvec0b = 0; 167140781036SHong Zhang b->slvec1 = 0; 167240781036SHong Zhang b->slvec1a = 0; 167340781036SHong Zhang b->slvec1b = 0; 167440781036SHong Zhang b->sMvctx = 0; 1675b5df2d14SHong Zhang 1676b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1677b5df2d14SHong Zhang b->rowindices = 0; 1678b5df2d14SHong Zhang b->rowvalues = 0; 1679b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1680b5df2d14SHong Zhang 1681b5df2d14SHong Zhang /* hash table stuff */ 1682b5df2d14SHong Zhang b->ht = 0; 1683b5df2d14SHong Zhang b->hd = 0; 1684b5df2d14SHong Zhang b->ht_size = 0; 1685b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1686b5df2d14SHong Zhang b->ht_fact = 0; 1687b5df2d14SHong Zhang b->ht_total_ct = 0; 1688b5df2d14SHong Zhang b->ht_insert_ct = 0; 1689b5df2d14SHong Zhang 1690b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1691b5df2d14SHong Zhang if (flg) { 1692f6275e2eSBarry Smith PetscReal fact = 1.39; 1693b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 169487828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1695b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1696b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1697b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1698b5df2d14SHong Zhang } 1699b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1700b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1701b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1702b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1703b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1704b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1705b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1706b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1707b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1708b5df2d14SHong Zhang PetscFunctionReturn(0); 1709b5df2d14SHong Zhang } 1710273d9f13SBarry Smith EXTERN_C_END 1711b5df2d14SHong Zhang 17124a2ae208SSatish Balay #undef __FUNCT__ 17134a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1714b5df2d14SHong Zhang /*@C 1715b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1716b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1717b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1718b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1719b5df2d14SHong Zhang 1720b5df2d14SHong Zhang Collective on Mat 1721b5df2d14SHong Zhang 1722b5df2d14SHong Zhang Input Parameters: 1723b5df2d14SHong Zhang + A - the matrix 1724b5df2d14SHong Zhang . bs - size of blockk 1725b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1726b5df2d14SHong Zhang submatrix (same for all local rows) 1727b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 1728b5df2d14SHong Zhang of the in diagonal portion of the local (possibly different for each block 1729b5df2d14SHong Zhang row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1730b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1731b5df2d14SHong Zhang submatrix (same for all local rows). 1732b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1733b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1734b5df2d14SHong Zhang each block row) or PETSC_NULL. 1735b5df2d14SHong Zhang 1736b5df2d14SHong Zhang 1737b5df2d14SHong Zhang Options Database Keys: 1738b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1739b5df2d14SHong Zhang block calculations (much slower) 1740b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1741b5df2d14SHong Zhang 1742b5df2d14SHong Zhang Notes: 1743b5df2d14SHong Zhang 1744b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1745b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1746b5df2d14SHong Zhang 1747b5df2d14SHong Zhang Storage Information: 1748b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1749b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1750b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1751b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1752b5df2d14SHong Zhang 1753b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1754b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1755b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1756b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1757b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1758b5df2d14SHong Zhang 1759b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1760b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1761b5df2d14SHong Zhang 1762b5df2d14SHong Zhang .vb 1763b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1764b5df2d14SHong Zhang ------------------- 1765b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1766b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1767b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1768b5df2d14SHong Zhang ------------------- 1769b5df2d14SHong Zhang .ve 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1772b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 1773b5df2d14SHong Zhang o (off-diagonal) submatrix. Note that the d and the o submatrices are 1774b5df2d14SHong Zhang stored simply in the MATSEQBAIJ format for compressed row storage. 1775b5df2d14SHong Zhang 1776b5df2d14SHong Zhang Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1777b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1778b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1779b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1780b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1781b5df2d14SHong Zhang matrices. 1782b5df2d14SHong Zhang 1783b5df2d14SHong Zhang Level: intermediate 1784b5df2d14SHong Zhang 1785b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1786b5df2d14SHong Zhang 1787b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1788b5df2d14SHong Zhang @*/ 1789b5df2d14SHong Zhang 1790b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1791b5df2d14SHong Zhang { 1792b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1793eb7adc28SSatish Balay int ierr,i,mbs,Mbs; 1794273d9f13SBarry Smith PetscTruth flg2; 1795b5df2d14SHong Zhang 1796b5df2d14SHong Zhang PetscFunctionBegin; 1797273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr); 1798273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1799273d9f13SBarry Smith 1800b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1801b5df2d14SHong Zhang 1802b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1803435da068SBarry Smith if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1804435da068SBarry Smith if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1805435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1806435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1807b5df2d14SHong Zhang if (d_nnz) { 1808b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1809b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1810b5df2d14SHong Zhang } 1811b5df2d14SHong Zhang } 1812b5df2d14SHong Zhang if (o_nnz) { 1813b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1814b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1815b5df2d14SHong Zhang } 1816b5df2d14SHong Zhang } 181719138431SHong Zhang B->preallocated = PETSC_TRUE; 181819138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 181919138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 18208a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 18218a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1822b5df2d14SHong Zhang 1823b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1824b5df2d14SHong Zhang mbs = B->m/bs; 1825b5df2d14SHong Zhang Mbs = B->M/bs; 1826b5df2d14SHong Zhang if (mbs*bs != B->m) { 182719138431SHong Zhang SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1828b5df2d14SHong Zhang } 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang b->bs = bs; 1831b5df2d14SHong Zhang b->bs2 = bs*bs; 1832b5df2d14SHong Zhang b->mbs = mbs; 1833b5df2d14SHong Zhang b->nbs = mbs; 1834b5df2d14SHong Zhang b->Mbs = Mbs; 1835b5df2d14SHong Zhang b->Nbs = Mbs; 1836b5df2d14SHong Zhang 1837b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1838b5df2d14SHong Zhang b->rowners[0] = 0; 1839b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1840b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1841b5df2d14SHong Zhang } 1842b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1843b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1844b5df2d14SHong Zhang b->cstart = b->rstart; 1845b5df2d14SHong Zhang b->cend = b->rend; 1846b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1847b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1848b5df2d14SHong Zhang } 1849b5df2d14SHong Zhang b->rstart_bs = b-> rstart*bs; 1850b5df2d14SHong Zhang b->rend_bs = b->rend*bs; 1851b5df2d14SHong Zhang 1852b5df2d14SHong Zhang b->cstart_bs = b->cstart*bs; 1853b5df2d14SHong Zhang b->cend_bs = b->cend*bs; 1854b5df2d14SHong Zhang 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1857b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 1858b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1859b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 1860b5df2d14SHong Zhang 1861b5df2d14SHong Zhang /* build cache for off array entries formed */ 1862b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang PetscFunctionReturn(0); 1865b5df2d14SHong Zhang } 1866b5df2d14SHong Zhang 18674a2ae208SSatish Balay #undef __FUNCT__ 18684a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1869a30f8f8cSSatish Balay /*@C 1870a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1871a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1872a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1873a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1874a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1875a30f8f8cSSatish Balay 1876a30f8f8cSSatish Balay Collective on MPI_Comm 1877a30f8f8cSSatish Balay 1878a30f8f8cSSatish Balay Input Parameters: 1879a30f8f8cSSatish Balay + comm - MPI communicator 1880a30f8f8cSSatish Balay . bs - size of blockk 1881a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1882a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1883a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1884a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1885a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1886a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1887a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1888a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1889a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1890a30f8f8cSSatish Balay submatrix (same for all local rows) 1891a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1892a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1893a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1894a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1895a30f8f8cSSatish Balay submatrix (same for all local rows). 1896a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1897a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1898a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1899a30f8f8cSSatish Balay 1900a30f8f8cSSatish Balay Output Parameter: 1901a30f8f8cSSatish Balay . A - the matrix 1902a30f8f8cSSatish Balay 1903a30f8f8cSSatish Balay Options Database Keys: 1904a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1905a30f8f8cSSatish Balay block calculations (much slower) 1906a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1907a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1908a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1909a30f8f8cSSatish Balay 1910a30f8f8cSSatish Balay Notes: 1911a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1912a30f8f8cSSatish Balay (possibly both). 1913a30f8f8cSSatish Balay 1914a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1915a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1916a30f8f8cSSatish Balay 1917a30f8f8cSSatish Balay Storage Information: 1918a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1919a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1920a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1921a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1922a30f8f8cSSatish Balay 1923a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1924a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1925a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1926a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1927a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1928a30f8f8cSSatish Balay 1929a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1930a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1931a30f8f8cSSatish Balay 1932a30f8f8cSSatish Balay .vb 1933a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1934a30f8f8cSSatish Balay ------------------- 1935a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1936a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1937a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1938a30f8f8cSSatish Balay ------------------- 1939a30f8f8cSSatish Balay .ve 1940a30f8f8cSSatish Balay 1941a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1942a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1943a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1944a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1945a30f8f8cSSatish Balay 1946a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1947a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1948a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1949a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1950a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1951a30f8f8cSSatish Balay matrices. 1952a30f8f8cSSatish Balay 1953a30f8f8cSSatish Balay Level: intermediate 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1956a30f8f8cSSatish Balay 1957a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1958a30f8f8cSSatish Balay @*/ 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1961a30f8f8cSSatish Balay { 1962273d9f13SBarry Smith int ierr,size; 1963a30f8f8cSSatish Balay 1964a30f8f8cSSatish Balay PetscFunctionBegin; 1965b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1966273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1967273d9f13SBarry Smith if (size > 1) { 1968b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1969b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1970273d9f13SBarry Smith } else { 1971273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1972273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1973273d9f13SBarry Smith } 1974a30f8f8cSSatish Balay PetscFunctionReturn(0); 1975a30f8f8cSSatish Balay } 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay 19784a2ae208SSatish Balay #undef __FUNCT__ 19794a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 1980a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1981a30f8f8cSSatish Balay { 1982a30f8f8cSSatish Balay Mat mat; 1983a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1984a30f8f8cSSatish Balay int ierr,len=0; 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay PetscFunctionBegin; 1987a30f8f8cSSatish Balay *newmat = 0; 1988b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1989b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 1990273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1991b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1992a30f8f8cSSatish Balay a->bs = oldmat->bs; 1993a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1994a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1995a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1996a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1997a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2000a30f8f8cSSatish Balay a->rend = oldmat->rend; 2001a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2002a30f8f8cSSatish Balay a->cend = oldmat->cend; 2003a30f8f8cSSatish Balay a->size = oldmat->size; 2004a30f8f8cSSatish Balay a->rank = oldmat->rank; 2005a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2006a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2007a30f8f8cSSatish Balay a->rowindices = 0; 2008a30f8f8cSSatish Balay a->rowvalues = 0; 2009a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2010a30f8f8cSSatish Balay a->barray = 0; 2011a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2012a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2013a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2014a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2015a30f8f8cSSatish Balay 2016a30f8f8cSSatish Balay /* hash table stuff */ 2017a30f8f8cSSatish Balay a->ht = 0; 2018a30f8f8cSSatish Balay a->hd = 0; 2019a30f8f8cSSatish Balay a->ht_size = 0; 2020a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2021a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2022a30f8f8cSSatish Balay a->ht_total_ct = 0; 2023a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2024a30f8f8cSSatish Balay 202582502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 2026b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 2027a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 2028a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 2029a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2030a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2031a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2032a30f8f8cSSatish Balay if (oldmat->colmap) { 2033a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2034a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2035a30f8f8cSSatish Balay #else 203682502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2037b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2038a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2039a30f8f8cSSatish Balay #endif 2040a30f8f8cSSatish Balay } else a->colmap = 0; 2041a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 204282502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2043b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2044a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2045a30f8f8cSSatish Balay } else a->garray = 0; 2046a30f8f8cSSatish Balay 2047a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2048b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2049a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2050a30f8f8cSSatish Balay 2051b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 2052a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2053b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2054a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2055b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2056b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2057a30f8f8cSSatish Balay *newmat = mat; 2058a30f8f8cSSatish Balay PetscFunctionReturn(0); 2059a30f8f8cSSatish Balay } 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay #include "petscsys.h" 2062a30f8f8cSSatish Balay 2063273d9f13SBarry Smith EXTERN_C_BEGIN 20644a2ae208SSatish Balay #undef __FUNCT__ 20654a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2066b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 2067a30f8f8cSSatish Balay { 2068a30f8f8cSSatish Balay Mat A; 2069a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 207087828ca2SBarry Smith PetscScalar *vals,*buf; 2071a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2072a30f8f8cSSatish Balay MPI_Status status; 2073a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2074a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2075a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2076a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2077a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2078a30f8f8cSSatish Balay 2079a30f8f8cSSatish Balay PetscFunctionBegin; 2080b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2081a30f8f8cSSatish Balay 2082a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2083a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2084a30f8f8cSSatish Balay if (!rank) { 2085b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2086a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2087552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2088a30f8f8cSSatish Balay if (header[3] < 0) { 208929bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2090a30f8f8cSSatish Balay } 2091a30f8f8cSSatish Balay } 2092a30f8f8cSSatish Balay 2093a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2094a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2095a30f8f8cSSatish Balay 209629bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2097a30f8f8cSSatish Balay 2098a30f8f8cSSatish Balay /* 2099a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2100a30f8f8cSSatish Balay divisible by the blocksize 2101a30f8f8cSSatish Balay */ 2102a30f8f8cSSatish Balay Mbs = M/bs; 2103a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2104a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2105a30f8f8cSSatish Balay else Mbs++; 2106a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2107b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2108a30f8f8cSSatish Balay } 2109a30f8f8cSSatish Balay 2110a30f8f8cSSatish Balay /* determine ownership of all rows */ 2111a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2112a30f8f8cSSatish Balay m = mbs*bs; 2113b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2114a30f8f8cSSatish Balay browners = rowners + size + 1; 2115a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2116a30f8f8cSSatish Balay rowners[0] = 0; 2117a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2118a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2119a30f8f8cSSatish Balay rstart = rowners[rank]; 2120a30f8f8cSSatish Balay rend = rowners[rank+1]; 2121a30f8f8cSSatish Balay 2122a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 212382502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2124a30f8f8cSSatish Balay if (!rank) { 2125b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2126a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 212882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2129a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2130a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2131a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay } else { 2133a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2134a30f8f8cSSatish Balay } 2135a30f8f8cSSatish Balay 21360222edb1SHong Zhang if (!rank) { /* procs[0] */ 2137a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 213882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2140a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2141a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2142a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2143a30f8f8cSSatish Balay } 2144a30f8f8cSSatish Balay } 2145a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay 2147a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2148a30f8f8cSSatish Balay maxnz = 0; 2149a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2150a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2151a30f8f8cSSatish Balay } 215282502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay 2154a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2155a30f8f8cSSatish Balay nz = procsnz[0]; 215682502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2157a30f8f8cSSatish Balay mycols = ibuf; 2158a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2159a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2161a30f8f8cSSatish Balay 2162a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2163a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2164a30f8f8cSSatish Balay nz = procsnz[i]; 2165a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay } 2168a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2169a30f8f8cSSatish Balay if (size != 1) { 2170a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2171a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2173a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay } 2175a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21760222edb1SHong Zhang } else { /* procs[i], i>0 */ 2177a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2178a30f8f8cSSatish Balay nz = 0; 2179a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2180a30f8f8cSSatish Balay nz += locrowlens[i]; 2181a30f8f8cSSatish Balay } 218282502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2183a30f8f8cSSatish Balay mycols = ibuf; 2184a30f8f8cSSatish Balay /* receive message of column indices*/ 2185a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 218729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2188a30f8f8cSSatish Balay } 2189a30f8f8cSSatish Balay 2190a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 219182502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 219382502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2195a30f8f8cSSatish Balay masked1 = mask + Mbs; 2196a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2197a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2198a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2199a30f8f8cSSatish Balay dcount = 0; 2200a30f8f8cSSatish Balay odcount = 0; 2201a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2202a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2203a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22040222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2205a30f8f8cSSatish Balay if (!mask[tmp]) { 2206a30f8f8cSSatish Balay mask[tmp] = 1; 22070222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22080222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2209a30f8f8cSSatish Balay } 2210a30f8f8cSSatish Balay } 2211a30f8f8cSSatish Balay rowcount++; 2212a30f8f8cSSatish Balay } 2213a30f8f8cSSatish Balay 22140222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22150222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2216a30f8f8cSSatish Balay 2217a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2218a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2219a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2220a30f8f8cSSatish Balay } 2221a30f8f8cSSatish Balay 2222a30f8f8cSSatish Balay /* create our matrix */ 22237e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2224bfe19f1aSHong Zhang CHKERRQ(ierr); 2225a30f8f8cSSatish Balay A = *newmat; 2226273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay 2228a30f8f8cSSatish Balay if (!rank) { 222987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2231a30f8f8cSSatish Balay nz = procsnz[0]; 2232a30f8f8cSSatish Balay vals = buf; 2233a30f8f8cSSatish Balay mycols = ibuf; 2234a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2235a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2236a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2237a30f8f8cSSatish Balay 2238a30f8f8cSSatish Balay /* insert into matrix */ 2239a30f8f8cSSatish Balay jj = rstart*bs; 2240a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22417e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2242a30f8f8cSSatish Balay mycols += locrowlens[i]; 2243a30f8f8cSSatish Balay vals += locrowlens[i]; 2244a30f8f8cSSatish Balay jj++; 2245a30f8f8cSSatish Balay } 22467e06b45fSHong Zhang 2247a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2248a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2249a30f8f8cSSatish Balay nz = procsnz[i]; 2250a30f8f8cSSatish Balay vals = buf; 2251a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2253a30f8f8cSSatish Balay } 2254a30f8f8cSSatish Balay /* the last proc */ 2255a30f8f8cSSatish Balay if (size != 1){ 2256a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2257a30f8f8cSSatish Balay vals = buf; 2258a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2259a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2260a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2261a30f8f8cSSatish Balay } 2262a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22637e06b45fSHong Zhang 2264a30f8f8cSSatish Balay } else { 2265a30f8f8cSSatish Balay /* receive numeric values */ 226687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2267a30f8f8cSSatish Balay 2268a30f8f8cSSatish Balay /* receive message of values*/ 2269a30f8f8cSSatish Balay vals = buf; 2270a30f8f8cSSatish Balay mycols = ibuf; 2271a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 227329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2274a30f8f8cSSatish Balay 2275a30f8f8cSSatish Balay /* insert into matrix */ 2276a30f8f8cSSatish Balay jj = rstart*bs; 2277a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2278a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2279a30f8f8cSSatish Balay mycols += locrowlens[i]; 2280a30f8f8cSSatish Balay vals += locrowlens[i]; 2281a30f8f8cSSatish Balay jj++; 2282a30f8f8cSSatish Balay } 2283a30f8f8cSSatish Balay } 22847e06b45fSHong Zhang 2285a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2286a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2287a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2288a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2289a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2290a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2291a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2292a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2293a30f8f8cSSatish Balay PetscFunctionReturn(0); 2294a30f8f8cSSatish Balay } 2295273d9f13SBarry Smith EXTERN_C_END 2296a30f8f8cSSatish Balay 22974a2ae208SSatish Balay #undef __FUNCT__ 22984a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2299a30f8f8cSSatish Balay /*@ 2300a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2301a30f8f8cSSatish Balay 2302a30f8f8cSSatish Balay Input Parameters: 2303a30f8f8cSSatish Balay . mat - the matrix 2304a30f8f8cSSatish Balay . fact - factor 2305a30f8f8cSSatish Balay 2306a30f8f8cSSatish Balay Collective on Mat 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay Level: advanced 2309a30f8f8cSSatish Balay 2310a30f8f8cSSatish Balay Notes: 2311a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2314a30f8f8cSSatish Balay 2315a30f8f8cSSatish Balay .seealso: MatSetOption() 2316a30f8f8cSSatish Balay @*/ 2317a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2318a30f8f8cSSatish Balay { 2319a30f8f8cSSatish Balay PetscFunctionBegin; 232029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 232196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2322a30f8f8cSSatish Balay } 232324d5174aSHong Zhang 23244a2ae208SSatish Balay #undef __FUNCT__ 23254a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 232624d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 232724d5174aSHong Zhang { 232824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2329f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2330ca54ac64SHong Zhang PetscReal atmp; 233187828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2332ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2333154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 233487828ca2SBarry Smith PetscScalar *va; 23358a1c53f2SBarry Smith MatScalar *ba; 2336f4c0e9e4SHong Zhang MPI_Status stat; 233724d5174aSHong Zhang 233824d5174aSHong Zhang PetscFunctionBegin; 2339d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2340f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2341f4c0e9e4SHong Zhang 2342ac355199SBarry Smith ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 2343ac355199SBarry Smith ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 2344f4c0e9e4SHong Zhang 2345f4c0e9e4SHong Zhang bs = a->bs; 2346f4c0e9e4SHong Zhang mbs = a->mbs; 2347f4c0e9e4SHong Zhang Mbs = a->Mbs; 2348f4c0e9e4SHong Zhang ba = b->a; 2349f4c0e9e4SHong Zhang bi = b->i; 2350f4c0e9e4SHong Zhang bj = b->j; 2351ca54ac64SHong Zhang /* 2352f4c0e9e4SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 2353f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2354ca54ac64SHong Zhang */ 2355f4c0e9e4SHong Zhang 2356f4c0e9e4SHong Zhang /* find ownerships */ 2357f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2358f4c0e9e4SHong Zhang /* 235904d41228SHong Zhang if (!rank){ 236004d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2361f4c0e9e4SHong Zhang } 2362f4c0e9e4SHong Zhang */ 2363f4c0e9e4SHong Zhang 2364f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 236582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2366ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2367f4c0e9e4SHong Zhang 2368f4c0e9e4SHong Zhang /* row_max for B */ 2369b8475685SHong Zhang if (rank != size-1){ 2370f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2371f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2372f4c0e9e4SHong Zhang brow = bs*i; 2373f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2374f4c0e9e4SHong Zhang bcol = bs*(*bj); 2375f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2376ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 237704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2378ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2379f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2380f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2381ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2382f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2383ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2384f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2385f4c0e9e4SHong Zhang } 2386f4c0e9e4SHong Zhang } 2387f4c0e9e4SHong Zhang bj++; 2388f4c0e9e4SHong Zhang } 2389f4c0e9e4SHong Zhang } 239004d41228SHong Zhang /* 239104d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 239204d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 239304d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 239404d41228SHong Zhang */ 2395f4c0e9e4SHong Zhang 2396f4c0e9e4SHong Zhang /* send values to its owners */ 2397f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2398f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2399ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2400d7d1e502SBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr); 2401ca54ac64SHong Zhang /* 240204d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 2403f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2404ca54ac64SHong Zhang */ 2405ca54ac64SHong Zhang } 2406f4c0e9e4SHong Zhang } 2407f4c0e9e4SHong Zhang 2408f4c0e9e4SHong Zhang /* receive values */ 2409ca54ac64SHong Zhang if (rank){ 2410f4c0e9e4SHong Zhang rvalues = work; 2411ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2412f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 2413d7d1e502SBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr); 2414f4c0e9e4SHong Zhang /* process values */ 2415f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2416ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2417f4c0e9e4SHong Zhang } 2418ca54ac64SHong Zhang /* 241904d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 2420f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2421ca54ac64SHong Zhang */ 2422f4c0e9e4SHong Zhang } 2423ca54ac64SHong Zhang } 2424f4c0e9e4SHong Zhang 2425f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2426ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 242724d5174aSHong Zhang PetscFunctionReturn(0); 242824d5174aSHong Zhang } 24292798e883SHong Zhang 24302798e883SHong Zhang #undef __FUNCT__ 24312798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2432c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 24332798e883SHong Zhang { 24342798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 24352798e883SHong Zhang int ierr; 2436d05c616dSSatish Balay PetscScalar mone=-1.0; 24372798e883SHong Zhang Vec lvec1,bb1; 24382798e883SHong Zhang 24392798e883SHong Zhang PetscFunctionBegin; 244091723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 24412798e883SHong Zhang if (mat->bs > 1) 24422798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24432798e883SHong Zhang 2444c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24452798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2446c14dc6b6SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr); 24472798e883SHong Zhang its--; 24482798e883SHong Zhang } 24492798e883SHong Zhang 24502798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24512798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24522798e883SHong Zhang while (its--){ 24532798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24542798e883SHong Zhang 24552798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 24562798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 24572798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 24582798e883SHong Zhang 24592798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24602798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 24612798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24622798e883SHong Zhang 24632798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 24642798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 24652798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 24662798e883SHong Zhang 24672798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24682798e883SHong Zhang 2469c14dc6b6SHong Zhang /* diagonal sweep */ 2470862afb7bSHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr); 24712798e883SHong Zhang } 24722798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 24732798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2474c14dc6b6SHong Zhang } else { 2475c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2476c14dc6b6SHong Zhang } 24772798e883SHong Zhang PetscFunctionReturn(0); 24782798e883SHong Zhang } 24792798e883SHong Zhang 2480