1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 103a30f8f8cSSatish Balay N = nrow++ - 1; \ 104a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 105a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 106a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 107a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 110a30f8f8cSSatish Balay rp[_i] = bcol; \ 111a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 112a30f8f8cSSatish Balay a_noinsert:; \ 113a30f8f8cSSatish Balay ailen[brow] = nrow; \ 114a30f8f8cSSatish Balay } 115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 116a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 117a30f8f8cSSatish Balay { \ 118a30f8f8cSSatish Balay brow = row/bs; \ 119a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 120a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 121a30f8f8cSSatish Balay bcol = col/bs; \ 122a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 123a30f8f8cSSatish Balay low = 0; high = nrow; \ 124a30f8f8cSSatish Balay while (high-low > 3) { \ 125a30f8f8cSSatish Balay t = (low+high)/2; \ 126a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 127a30f8f8cSSatish Balay else low = t; \ 128a30f8f8cSSatish Balay } \ 129a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 130a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 131a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 132a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 133a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 134a30f8f8cSSatish Balay else *bap = value; \ 135a30f8f8cSSatish Balay goto b_noinsert; \ 136a30f8f8cSSatish Balay } \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 139085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 140421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay b_noinsert:; \ 151a30f8f8cSSatish Balay bilen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #endif 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1564a2ae208SSatish Balay #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 159a30f8f8cSSatish Balay { 160a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 161dfbe8321SBarry Smith PetscErrorCode ierr; 1621302d50aSBarry Smith PetscInt i,N = m*n; 163a30f8f8cSSatish Balay MatScalar *vsingle; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay PetscFunctionBegin; 166a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16705b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 169a30f8f8cSSatish Balay b->setvalueslen = N; 170a30f8f8cSSatish Balay } 171a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 172a30f8f8cSSatish Balay 173a30f8f8cSSatish Balay for (i=0; i<N; i++) { 174a30f8f8cSSatish Balay vsingle[i] = v[i]; 175a30f8f8cSSatish Balay } 176a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 177a30f8f8cSSatish Balay PetscFunctionReturn(0); 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 1804a2ae208SSatish Balay #undef __FUNCT__ 1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 183a30f8f8cSSatish Balay { 184a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 185dfbe8321SBarry Smith PetscErrorCode ierr; 1861302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 187a30f8f8cSSatish Balay MatScalar *vsingle; 188a30f8f8cSSatish Balay 189a30f8f8cSSatish Balay PetscFunctionBegin; 190a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19105b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 193a30f8f8cSSatish Balay b->setvalueslen = N; 194a30f8f8cSSatish Balay } 195a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 196a30f8f8cSSatish Balay for (i=0; i<N; i++) { 197a30f8f8cSSatish Balay vsingle[i] = v[i]; 198a30f8f8cSSatish Balay } 199a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 200a30f8f8cSSatish Balay PetscFunctionReturn(0); 201a30f8f8cSSatish Balay } 202a30f8f8cSSatish Balay #endif 203a30f8f8cSSatish Balay 204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 205a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 206a30f8f8cSSatish Balay */ 2074a2ae208SSatish Balay #undef __FUNCT__ 208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar" 2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 210a30f8f8cSSatish Balay { 211a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 212a30f8f8cSSatish Balay MatScalar value; 213b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 214dfbe8321SBarry Smith PetscErrorCode ierr; 2151302d50aSBarry Smith PetscInt i,j,row,col; 216899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 217899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 218899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 219a30f8f8cSSatish Balay 220a30f8f8cSSatish Balay /* Some Variables required in the macro */ 221a30f8f8cSSatish Balay Mat A = baij->A; 222a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2231302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 224a30f8f8cSSatish Balay MatScalar *aa=a->a; 225a30f8f8cSSatish Balay 226a30f8f8cSSatish Balay Mat B = baij->B; 227a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2281302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 229a30f8f8cSSatish Balay MatScalar *ba=b->a; 230a30f8f8cSSatish Balay 2311302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2321302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 233a30f8f8cSSatish Balay MatScalar *ap,*bap; 234a30f8f8cSSatish Balay 235a30f8f8cSSatish Balay /* for stash */ 236910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 237910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 238a30f8f8cSSatish Balay 239a30f8f8cSSatish Balay PetscFunctionBegin; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay if (!baij->donotstash){ 24259ffdab8SBarry Smith if (n > baij->n_loc) { 24359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 24459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 24559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 24659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 24759ffdab8SBarry Smith baij->n_loc = n; 24859ffdab8SBarry Smith } 24959ffdab8SBarry Smith in_loc = baij->in_loc; 25059ffdab8SBarry Smith v_loc = baij->v_loc; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay for (i=0; i<m; i++) { 254a30f8f8cSSatish Balay if (im[i] < 0) continue; 2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 256899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 257a30f8f8cSSatish Balay #endif 258a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 259a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 260a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 26201b2bd88SHong Zhang if (a->ignore_ltriangular){ 26301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26401b2bd88SHong Zhang } else { 2654e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 26601b2bd88SHong Zhang } 26701b2bd88SHong Zhang } 268a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 269a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 270a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 271a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 272a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 273a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 274a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 275a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 277899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 280a30f8f8cSSatish Balay if (mat->was_assembled) { 281a30f8f8cSSatish Balay if (!baij->colmap) { 282653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 285a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28671730473SSatish Balay col = col - 1; 287a30f8f8cSSatish Balay #else 28871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 289a30f8f8cSSatish Balay #endif 290a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 291a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 292a30f8f8cSSatish Balay col = in[j]; 293a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 294a30f8f8cSSatish Balay B = baij->B; 295a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 296a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 297a30f8f8cSSatish Balay ba=b->a; 29871730473SSatish Balay } else col += in[j]%bs; 299a30f8f8cSSatish Balay } else col = in[j]; 300a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 301a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 302a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay } else { /* off processor entry */ 306a30f8f8cSSatish Balay if (!baij->donotstash) { 307a30f8f8cSSatish Balay n_loc = 0; 308a30f8f8cSSatish Balay for (j=0; j<n; j++){ 309f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 310a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 311a30f8f8cSSatish Balay if (roworiented) { 312a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 313a30f8f8cSSatish Balay } else { 314a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay n_loc++; 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 319a30f8f8cSSatish Balay } 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay PetscFunctionReturn(0); 323a30f8f8cSSatish Balay } 324a30f8f8cSSatish Balay 3254a2ae208SSatish Balay #undef __FUNCT__ 326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 328a30f8f8cSSatish Balay { 3290880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 330f15d580aSBarry Smith const MatScalar *value; 331f15d580aSBarry Smith MatScalar *barray=baij->barray; 3320880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 333dfbe8321SBarry Smith PetscErrorCode ierr; 334899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 335899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 336899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3370880e062SHong Zhang 338a30f8f8cSSatish Balay PetscFunctionBegin; 3390880e062SHong Zhang if(!barray) { 3400880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3410880e062SHong Zhang baij->barray = barray; 3420880e062SHong Zhang } 3430880e062SHong Zhang 3440880e062SHong Zhang if (roworiented) { 3450880e062SHong Zhang stepval = (n-1)*bs; 3460880e062SHong Zhang } else { 3470880e062SHong Zhang stepval = (m-1)*bs; 3480880e062SHong Zhang } 3490880e062SHong Zhang for (i=0; i<m; i++) { 3500880e062SHong Zhang if (im[i] < 0) continue; 3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3530880e062SHong Zhang #endif 3540880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3550880e062SHong Zhang row = im[i] - rstart; 3560880e062SHong Zhang for (j=0; j<n; j++) { 3570880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3580880e062SHong Zhang if ((roworiented) && (n == 1)) { 359f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3600880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 361f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3620880e062SHong Zhang } else { /* Here a copy is required */ 3630880e062SHong Zhang if (roworiented) { 3640880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3650880e062SHong Zhang } else { 3660880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3670880e062SHong Zhang } 3680880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3690880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3700880e062SHong Zhang *barray++ = *value++; 3710880e062SHong Zhang } 3720880e062SHong Zhang } 3730880e062SHong Zhang barray -=bs2; 3740880e062SHong Zhang } 3750880e062SHong Zhang 3760880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3770880e062SHong Zhang col = in[j] - cstart; 3780880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3790880e062SHong Zhang } 3800880e062SHong Zhang else if (in[j] < 0) continue; 3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3830880e062SHong Zhang #endif 3840880e062SHong Zhang else { 3850880e062SHong Zhang if (mat->was_assembled) { 3860880e062SHong Zhang if (!baij->colmap) { 387653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3880880e062SHong Zhang } 3890880e062SHong Zhang 3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3921302d50aSBarry Smith { PetscInt data; 3930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3940880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3950880e062SHong Zhang } 3960880e062SHong Zhang #else 3970880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3980880e062SHong Zhang #endif 3990880e062SHong Zhang #endif 4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4020880e062SHong Zhang col = (col - 1)/bs; 4030880e062SHong Zhang #else 4040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4050880e062SHong Zhang #endif 4060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4070880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4080880e062SHong Zhang col = in[j]; 4090880e062SHong Zhang } 4100880e062SHong Zhang } 4110880e062SHong Zhang else col = in[j]; 412e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4130880e062SHong Zhang } 4140880e062SHong Zhang } 4150880e062SHong Zhang } else { 4160880e062SHong Zhang if (!baij->donotstash) { 4170880e062SHong Zhang if (roworiented) { 4180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4190880e062SHong Zhang } else { 4200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4210880e062SHong Zhang } 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang } 4250880e062SHong Zhang PetscFunctionReturn(0); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay 4284a2ae208SSatish Balay #undef __FUNCT__ 4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 431a30f8f8cSSatish Balay { 432f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4336849ba73SBarry Smith PetscErrorCode ierr; 434899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 435899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 436a30f8f8cSSatish Balay 437a30f8f8cSSatish Balay PetscFunctionBegin; 438a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43997e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 440899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 441a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 442a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 443a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44497e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 445899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 446a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 447a30f8f8cSSatish Balay col = idxn[j] - bscstart; 448c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 449a30f8f8cSSatish Balay } else { 450a30f8f8cSSatish Balay if (!baij->colmap) { 451653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 452a30f8f8cSSatish Balay } 453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 454a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 455a30f8f8cSSatish Balay data --; 456a30f8f8cSSatish Balay #else 457a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 458a30f8f8cSSatish Balay #endif 459a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 460a30f8f8cSSatish Balay else { 461a30f8f8cSSatish Balay col = data + idxn[j]%bs; 462e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 463a30f8f8cSSatish Balay } 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } 466a30f8f8cSSatish Balay } else { 46729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay } 470a30f8f8cSSatish Balay PetscFunctionReturn(0); 471a30f8f8cSSatish Balay } 472a30f8f8cSSatish Balay 4734a2ae208SSatish Balay #undef __FUNCT__ 4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 476a30f8f8cSSatish Balay { 477a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 478dfbe8321SBarry Smith PetscErrorCode ierr; 479a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 480a30f8f8cSSatish Balay 481a30f8f8cSSatish Balay PetscFunctionBegin; 482a30f8f8cSSatish Balay if (baij->size == 1) { 483a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 484a30f8f8cSSatish Balay } else { 485a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 486f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 487a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 488a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 489a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 490a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4917adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 492a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 493a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4940b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4950b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4960b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4970b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 498899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 499899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 5000b8dc8d2SHong Zhang MatScalar *v; 5010b8dc8d2SHong Zhang 502899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 503899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 504899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5050b8dc8d2SHong Zhang /* Amat */ 5060b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5070b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5080b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5090b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5100b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5110b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5120b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5130b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5140b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5150b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5160b8dc8d2SHong Zhang /* non-diagonal block */ 5170b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5180b8dc8d2SHong Zhang } 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang } 5220b8dc8d2SHong Zhang /* Bmat */ 5230b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5240b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5250b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5260b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5270b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5280b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5290b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5300b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5310b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5320b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5330b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5340b8dc8d2SHong Zhang } 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang } 5387adad957SLisandro Dalcin ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 5390b8dc8d2SHong Zhang *norm = 0.0; 540899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5410b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5420b8dc8d2SHong Zhang } 5430b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 544a30f8f8cSSatish Balay } else { 54529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay PetscFunctionReturn(0); 549a30f8f8cSSatish Balay } 550a30f8f8cSSatish Balay 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 556dfbe8321SBarry Smith PetscErrorCode ierr; 5571302d50aSBarry Smith PetscInt nstash,reallocs; 558a30f8f8cSSatish Balay InsertMode addv; 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay PetscFunctionBegin; 561a30f8f8cSSatish Balay if (baij->donotstash) { 562a30f8f8cSSatish Balay PetscFunctionReturn(0); 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 5667adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 567a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 571a30f8f8cSSatish Balay 5721e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr); 5731e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5751e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 576a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5771e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 578a30f8f8cSSatish Balay PetscFunctionReturn(0); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay 5814a2ae208SSatish Balay #undef __FUNCT__ 5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 584a30f8f8cSSatish Balay { 585a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 586a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5876849ba73SBarry Smith PetscErrorCode ierr; 58813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5891302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 59013f74950SBarry Smith PetscMPIInt n; 591a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 592a30f8f8cSSatish Balay MatScalar *val; 593a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 594a30f8f8cSSatish Balay 59591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 596a30f8f8cSSatish Balay PetscFunctionBegin; 597a30f8f8cSSatish Balay 598a30f8f8cSSatish Balay if (!baij->donotstash) { 599a30f8f8cSSatish Balay while (1) { 600a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 601a30f8f8cSSatish Balay if (!flg) break; 602a30f8f8cSSatish Balay 603a30f8f8cSSatish Balay for (i=0; i<n;) { 604a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 605a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 606a30f8f8cSSatish Balay if (j < n) ncols = j-i; 607a30f8f8cSSatish Balay else ncols = n-i; 608a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 609a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 610a30f8f8cSSatish Balay i = j; 611a30f8f8cSSatish Balay } 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 614a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 615a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 616a30f8f8cSSatish Balay restore the original flags */ 617a30f8f8cSSatish Balay r1 = baij->roworiented; 618a30f8f8cSSatish Balay r2 = a->roworiented; 61991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 620a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 621a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 62291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 623a30f8f8cSSatish Balay while (1) { 624a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 625a30f8f8cSSatish Balay if (!flg) break; 626a30f8f8cSSatish Balay 627a30f8f8cSSatish Balay for (i=0; i<n;) { 628a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 629a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 630a30f8f8cSSatish Balay if (j < n) ncols = j-i; 631a30f8f8cSSatish Balay else ncols = n-i; 632a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 633a30f8f8cSSatish Balay i = j; 634a30f8f8cSSatish Balay } 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 637a30f8f8cSSatish Balay baij->roworiented = r1; 638a30f8f8cSSatish Balay a->roworiented = r2; 63991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 643a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 646a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 647a30f8f8cSSatish Balay /* 648a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 649a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 650a30f8f8cSSatish Balay */ 651a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 6527adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 653a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 654c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 660a30f8f8cSSatish Balay } 66191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 662a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 663a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 664a30f8f8cSSatish Balay 665a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 666a30f8f8cSSatish Balay baij->rowvalues = 0; 6675222a1afSHong Zhang 668a30f8f8cSSatish Balay PetscFunctionReturn(0); 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay 671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 6724a2ae208SSatish Balay #undef __FUNCT__ 6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6791302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68032077d6dSBarry Smith PetscTruth iascii,isdraw; 681b0a32e0cSBarry Smith PetscViewer sviewer; 682f3ef73ceSBarry Smith PetscViewerFormat format; 683a30f8f8cSSatish Balay 684a30f8f8cSSatish Balay PetscFunctionBegin; 68532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 686fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68732077d6dSBarry Smith if (iascii) { 688b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 690a30f8f8cSSatish Balay MatInfo info; 6917adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 694899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 695899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 70107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 702a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 703a30f8f8cSSatish Balay PetscFunctionReturn(0); 704fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 706a30f8f8cSSatish Balay PetscFunctionReturn(0); 707c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 708c1490034SHong Zhang PetscFunctionReturn(0); 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay 712a30f8f8cSSatish Balay if (isdraw) { 713b0a32e0cSBarry Smith PetscDraw draw; 714a30f8f8cSSatish Balay PetscTruth isnull; 715b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 716b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay 719a30f8f8cSSatish Balay if (size == 1) { 7207adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 721a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 722a30f8f8cSSatish Balay } else { 723a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 724a30f8f8cSSatish Balay Mat A; 72565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 727899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 728a30f8f8cSSatish Balay MatScalar *a; 729a30f8f8cSSatish Balay 730f204ca49SKris Buschelman /* Should this be the same type as mat? */ 7317adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 732a30f8f8cSSatish Balay if (!rank) { 733f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 734a30f8f8cSSatish Balay } else { 735f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 736a30f8f8cSSatish Balay } 737f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 738899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 740a30f8f8cSSatish Balay 741a30f8f8cSSatish Balay /* copy over the A part */ 74265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 743a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7441302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 745a30f8f8cSSatish Balay 746a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 747e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 748a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 749a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 750e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 751a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 752a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 753a30f8f8cSSatish Balay col++; a += bs; 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay } 757a30f8f8cSSatish Balay /* copy over the B part */ 75865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 760a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 761e9f7bc9eSHong Zhang 762e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 763a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 764a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 765a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 766a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 767799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 768a30f8f8cSSatish Balay col++; a += bs; 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 773a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 775a30f8f8cSSatish Balay /* 776a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 777b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 778a30f8f8cSSatish Balay */ 779b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 78065d70643SHong Zhang if (!rank) { 7817adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 782a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 783a30f8f8cSSatish Balay } 784b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay PetscFunctionReturn(0); 788a30f8f8cSSatish Balay } 789a30f8f8cSSatish Balay 7904a2ae208SSatish Balay #undef __FUNCT__ 7914a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 792dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 793a30f8f8cSSatish Balay { 794dfbe8321SBarry Smith PetscErrorCode ierr; 79532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 796a30f8f8cSSatish Balay 797a30f8f8cSSatish Balay PetscFunctionBegin; 79832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 799fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 800b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 801fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 803a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 804a30f8f8cSSatish Balay } else { 8051302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay PetscFunctionReturn(0); 808a30f8f8cSSatish Balay } 809a30f8f8cSSatish Balay 8104a2ae208SSatish Balay #undef __FUNCT__ 8114a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 812dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 813a30f8f8cSSatish Balay { 814a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 815dfbe8321SBarry Smith PetscErrorCode ierr; 816a30f8f8cSSatish Balay 817a30f8f8cSSatish Balay PetscFunctionBegin; 818a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 819899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 820a30f8f8cSSatish Balay #endif 821a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 822a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 824a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 825a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 8269c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 827a30f8f8cSSatish Balay #else 82805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 829a30f8f8cSSatish Balay #endif 83005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 831a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 832a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83340781036SHong Zhang if (baij->slvec0) { 83440781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83540781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83640781036SHong Zhang } 83740781036SHong Zhang if (baij->slvec1) { 83840781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83940781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 84040781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 84140781036SHong Zhang } 84240781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 84305b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 846a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 848a30f8f8cSSatish Balay #endif 84959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 85059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 851899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 852a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 853901853e0SKris Buschelman 854dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 855901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 856901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 857901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 858901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 859a30f8f8cSSatish Balay PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay 8624a2ae208SSatish Balay #undef __FUNCT__ 863a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 864dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 865a9d4b620SHong Zhang { 866a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 867dfbe8321SBarry Smith PetscErrorCode ierr; 868899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 869a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 870a9d4b620SHong Zhang 871a9d4b620SHong Zhang PetscFunctionBegin; 872a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 873899cda47SBarry Smith if (nt != A->cmap.n) { 874a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 875a9d4b620SHong Zhang } 876a9d4b620SHong Zhang 877a9d4b620SHong Zhang /* diagonal part */ 878a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8792dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 880a9d4b620SHong Zhang 881a9d4b620SHong Zhang /* subdiagonal part */ 882a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 883fc165ae2SBarry Smith 884a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8851ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8861ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 887a9d4b620SHong Zhang 888fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 889fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8901ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 891fc165ae2SBarry Smith 892fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 893ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 894a9d4b620SHong Zhang /* supperdiagonal part */ 895a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 896a9d4b620SHong Zhang PetscFunctionReturn(0); 897a9d4b620SHong Zhang } 898a9d4b620SHong Zhang 899a9d4b620SHong Zhang #undef __FUNCT__ 90040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 901dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 902a30f8f8cSSatish Balay { 903a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 904dfbe8321SBarry Smith PetscErrorCode ierr; 9051302d50aSBarry Smith PetscInt nt; 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay PetscFunctionBegin; 908a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 909899cda47SBarry Smith if (nt != A->cmap.n) { 91029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 911a30f8f8cSSatish Balay } 912a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 913899cda47SBarry Smith if (nt != A->rmap.N) { 91429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 915a30f8f8cSSatish Balay } 91665d70643SHong Zhang 917ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 918b941877fSHong Zhang /* do diagonal part */ 919b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 920b941877fSHong Zhang /* do supperdiagonal part */ 921ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 922b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 923b941877fSHong Zhang /* do subdiagonal part */ 924b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 925ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 926ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 92765d70643SHong Zhang 928a30f8f8cSSatish Balay PetscFunctionReturn(0); 929a30f8f8cSSatish Balay } 930a30f8f8cSSatish Balay 9314a2ae208SSatish Balay #undef __FUNCT__ 9324a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 933dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 934a30f8f8cSSatish Balay { 935de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 936dfbe8321SBarry Smith PetscErrorCode ierr; 937899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 938a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 939a9d4b620SHong Zhang 940a9d4b620SHong Zhang PetscFunctionBegin; 941a9d4b620SHong Zhang /* 9427adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9437adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 944a9d4b620SHong Zhang */ 945a9d4b620SHong Zhang /* diagonal part */ 946a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9472dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 948a9d4b620SHong Zhang 949a9d4b620SHong Zhang /* subdiagonal part */ 950a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 951a9d4b620SHong Zhang 952a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9531ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 955a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9561ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 957a9d4b620SHong Zhang 958ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9591ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 960ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 961a9d4b620SHong Zhang 962a9d4b620SHong Zhang /* supperdiagonal part */ 963a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 964a9d4b620SHong Zhang 965a9d4b620SHong Zhang PetscFunctionReturn(0); 966a9d4b620SHong Zhang } 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang #undef __FUNCT__ 969a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 970dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 971a9d4b620SHong Zhang { 972a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 973dfbe8321SBarry Smith PetscErrorCode ierr; 974a30f8f8cSSatish Balay 975a30f8f8cSSatish Balay PetscFunctionBegin; 976ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 977b941877fSHong Zhang /* do diagonal part */ 978b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 979b941877fSHong Zhang /* do supperdiagonal part */ 980ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 981de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 982de8b6608SHong Zhang 983b941877fSHong Zhang /* do subdiagonal part */ 984a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 985ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 986ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 987aa482183SHong Zhang 988a30f8f8cSSatish Balay PetscFunctionReturn(0); 989a30f8f8cSSatish Balay } 990a30f8f8cSSatish Balay 991a30f8f8cSSatish Balay /* 992a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 993a30f8f8cSSatish Balay diagonal block 994a30f8f8cSSatish Balay */ 9954a2ae208SSatish Balay #undef __FUNCT__ 9964a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 997dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 998a30f8f8cSSatish Balay { 999a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1000dfbe8321SBarry Smith PetscErrorCode ierr; 1001a30f8f8cSSatish Balay 1002a30f8f8cSSatish Balay PetscFunctionBegin; 1003899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1004a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1005a30f8f8cSSatish Balay PetscFunctionReturn(0); 1006a30f8f8cSSatish Balay } 1007a30f8f8cSSatish Balay 10084a2ae208SSatish Balay #undef __FUNCT__ 10094a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1010f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1011a30f8f8cSSatish Balay { 1012a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1013dfbe8321SBarry Smith PetscErrorCode ierr; 1014a30f8f8cSSatish Balay 1015a30f8f8cSSatish Balay PetscFunctionBegin; 1016f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1017f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1018a30f8f8cSSatish Balay PetscFunctionReturn(0); 1019a30f8f8cSSatish Balay } 1020a30f8f8cSSatish Balay 10214a2ae208SSatish Balay #undef __FUNCT__ 10224a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10231302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1024a30f8f8cSSatish Balay { 1025d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1026d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1027d0d4cfc2SHong Zhang PetscErrorCode ierr; 1028899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1029899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1030899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1031d0d4cfc2SHong Zhang 1032a30f8f8cSSatish Balay PetscFunctionBegin; 1033d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1034d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1035d0d4cfc2SHong Zhang 1036d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1037d0d4cfc2SHong Zhang /* 1038d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1039d0d4cfc2SHong Zhang */ 1040d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1041d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1042d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1043d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1044d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1045d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1046d0d4cfc2SHong Zhang } 1047d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1048d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1049d0d4cfc2SHong Zhang } 1050d0d4cfc2SHong Zhang 1051d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1052d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1053d0d4cfc2SHong Zhang 1054d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1055d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1056d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1057d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1058d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1059d0d4cfc2SHong Zhang nztot = nzA + nzB; 1060d0d4cfc2SHong Zhang 1061d0d4cfc2SHong Zhang cmap = mat->garray; 1062d0d4cfc2SHong Zhang if (v || idx) { 1063d0d4cfc2SHong Zhang if (nztot) { 1064d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1065d0d4cfc2SHong Zhang PetscInt imark = -1; 1066d0d4cfc2SHong Zhang if (v) { 1067d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1068d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1069d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1070d0d4cfc2SHong Zhang else break; 1071d0d4cfc2SHong Zhang } 1072d0d4cfc2SHong Zhang imark = i; 1073d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1074d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1075d0d4cfc2SHong Zhang } 1076d0d4cfc2SHong Zhang if (idx) { 1077d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1078d0d4cfc2SHong Zhang if (imark > -1) { 1079d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1080d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1081d0d4cfc2SHong Zhang } 1082d0d4cfc2SHong Zhang } else { 1083d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1084d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1085d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1086d0d4cfc2SHong Zhang else break; 1087d0d4cfc2SHong Zhang } 1088d0d4cfc2SHong Zhang imark = i; 1089d0d4cfc2SHong Zhang } 1090d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1091d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1092d0d4cfc2SHong Zhang } 1093d0d4cfc2SHong Zhang } else { 1094d0d4cfc2SHong Zhang if (idx) *idx = 0; 1095d0d4cfc2SHong Zhang if (v) *v = 0; 1096d0d4cfc2SHong Zhang } 1097d0d4cfc2SHong Zhang } 1098d0d4cfc2SHong Zhang *nz = nztot; 1099d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1100d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1101a30f8f8cSSatish Balay PetscFunctionReturn(0); 1102a30f8f8cSSatish Balay } 1103a30f8f8cSSatish Balay 11044a2ae208SSatish Balay #undef __FUNCT__ 11054a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11061302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1107a30f8f8cSSatish Balay { 1108a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1109a30f8f8cSSatish Balay 1110a30f8f8cSSatish Balay PetscFunctionBegin; 1111abc0a331SBarry Smith if (!baij->getrowactive) { 1112abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1113a30f8f8cSSatish Balay } 1114a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1115a30f8f8cSSatish Balay PetscFunctionReturn(0); 1116a30f8f8cSSatish Balay } 1117a30f8f8cSSatish Balay 11184a2ae208SSatish Balay #undef __FUNCT__ 1119d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1120d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1121d0d4cfc2SHong Zhang { 1122d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1123d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1124d0d4cfc2SHong Zhang 1125d0d4cfc2SHong Zhang PetscFunctionBegin; 1126d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1127d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1128d0d4cfc2SHong Zhang } 1129d0d4cfc2SHong Zhang #undef __FUNCT__ 1130d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1131d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1132d0d4cfc2SHong Zhang { 1133d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1134d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1135d0d4cfc2SHong Zhang 1136d0d4cfc2SHong Zhang PetscFunctionBegin; 1137d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1138d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1139d0d4cfc2SHong Zhang } 1140d0d4cfc2SHong Zhang 1141d0d4cfc2SHong Zhang #undef __FUNCT__ 114299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 114499cafbc1SBarry Smith { 114599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 114699cafbc1SBarry Smith PetscErrorCode ierr; 114799cafbc1SBarry Smith 114899cafbc1SBarry Smith PetscFunctionBegin; 114999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115199cafbc1SBarry Smith PetscFunctionReturn(0); 115299cafbc1SBarry Smith } 115399cafbc1SBarry Smith 115499cafbc1SBarry Smith #undef __FUNCT__ 115599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 115699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 115799cafbc1SBarry Smith { 115899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115999cafbc1SBarry Smith PetscErrorCode ierr; 116099cafbc1SBarry Smith 116199cafbc1SBarry Smith PetscFunctionBegin; 116299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 116499cafbc1SBarry Smith PetscFunctionReturn(0); 116599cafbc1SBarry Smith } 116699cafbc1SBarry Smith 116799cafbc1SBarry Smith #undef __FUNCT__ 11684a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1169dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1170a30f8f8cSSatish Balay { 1171a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1172dfbe8321SBarry Smith PetscErrorCode ierr; 1173a30f8f8cSSatish Balay 1174a30f8f8cSSatish Balay PetscFunctionBegin; 1175a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1176a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay PetscFunctionReturn(0); 1178a30f8f8cSSatish Balay } 1179a30f8f8cSSatish Balay 11804a2ae208SSatish Balay #undef __FUNCT__ 11814a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1182dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1183a30f8f8cSSatish Balay { 1184a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1185a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1186dfbe8321SBarry Smith PetscErrorCode ierr; 1187a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1188a30f8f8cSSatish Balay 1189a30f8f8cSSatish Balay PetscFunctionBegin; 1190899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1191a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1192a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1193a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1194a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1195a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1196a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1197a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1198a30f8f8cSSatish Balay info->nz_used = isend[0]; 1199a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1200a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1201a30f8f8cSSatish Balay info->memory = isend[3]; 1202a30f8f8cSSatish Balay info->mallocs = isend[4]; 1203a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 12047adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1205a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1206a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1207a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1208a30f8f8cSSatish Balay info->memory = irecv[3]; 1209a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1210a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 12117adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1212a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1213a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1214a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1215a30f8f8cSSatish Balay info->memory = irecv[3]; 1216a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1217a30f8f8cSSatish Balay } else { 121877431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1219a30f8f8cSSatish Balay } 1220899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1221899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1222899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1223899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1224a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1225a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1226a30f8f8cSSatish Balay info->factor_mallocs = 0; 1227a30f8f8cSSatish Balay PetscFunctionReturn(0); 1228a30f8f8cSSatish Balay } 1229a30f8f8cSSatish Balay 12304a2ae208SSatish Balay #undef __FUNCT__ 12314a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 12324e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1233a30f8f8cSSatish Balay { 1234a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1235d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1236dfbe8321SBarry Smith PetscErrorCode ierr; 1237a30f8f8cSSatish Balay 1238a30f8f8cSSatish Balay PetscFunctionBegin; 1239e98b92d7SKris Buschelman switch (op) { 1240512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1241e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1242e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1243e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12444e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12454e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1246e98b92d7SKris Buschelman break; 1247e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12484e0d8c25SBarry Smith a->roworiented = flg; 12494e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12504e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1251e98b92d7SKris Buschelman break; 12524e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1253290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1254e98b92d7SKris Buschelman break; 1255e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12564e0d8c25SBarry Smith a->donotstash = flg; 1257e98b92d7SKris Buschelman break; 1258e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12594e0d8c25SBarry Smith a->ht_flag = flg; 1260e98b92d7SKris Buschelman break; 12619a4540c5SBarry Smith case MAT_HERMITIAN: 12624e0d8c25SBarry Smith if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 126377e54ba9SKris Buschelman case MAT_SYMMETRIC: 126477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12659a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12664e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1267290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 126877e54ba9SKris Buschelman break; 1269d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12704e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1271d0d4cfc2SHong Zhang break; 1272d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12734e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1274d0d4cfc2SHong Zhang break; 1275d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12764e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1277d0d4cfc2SHong Zhang break; 1278e98b92d7SKris Buschelman default: 1279ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1280a30f8f8cSSatish Balay } 1281a30f8f8cSSatish Balay PetscFunctionReturn(0); 1282a30f8f8cSSatish Balay } 1283a30f8f8cSSatish Balay 12844a2ae208SSatish Balay #undef __FUNCT__ 12858115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1286dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1287a30f8f8cSSatish Balay { 1288dfbe8321SBarry Smith PetscErrorCode ierr; 1289a30f8f8cSSatish Balay PetscFunctionBegin; 1290999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12918115998fSBarry Smith PetscFunctionReturn(0); 1292a30f8f8cSSatish Balay } 1293a30f8f8cSSatish Balay 12944a2ae208SSatish Balay #undef __FUNCT__ 12954a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1296dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1297a30f8f8cSSatish Balay { 1298a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1299a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1300dfbe8321SBarry Smith PetscErrorCode ierr; 13015e90f9d9SHong Zhang PetscInt nv,m,n; 1302b3bf805bSHong Zhang PetscTruth flg; 1303a30f8f8cSSatish Balay 1304a30f8f8cSSatish Balay PetscFunctionBegin; 1305a30f8f8cSSatish Balay if (ll != rr){ 1306b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1307b3bf805bSHong Zhang if (!flg) 130829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1309a30f8f8cSSatish Balay } 1310b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1311b3bf805bSHong Zhang 13125e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13135e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1314b3bf805bSHong Zhang 13155e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13165e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13175e90f9d9SHong Zhang 1318ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13195e90f9d9SHong Zhang 13205e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1321a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13225e90f9d9SHong Zhang 13235e90f9d9SHong Zhang /* scale the diagonal part */ 1324a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1325a30f8f8cSSatish Balay 13265e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1327ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1328a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1329a30f8f8cSSatish Balay PetscFunctionReturn(0); 1330a30f8f8cSSatish Balay } 1331a30f8f8cSSatish Balay 13324a2ae208SSatish Balay #undef __FUNCT__ 13334a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1334dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1335a30f8f8cSSatish Balay { 1336f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1337dfbe8321SBarry Smith PetscErrorCode ierr; 1338a30f8f8cSSatish Balay 1339a30f8f8cSSatish Balay PetscFunctionBegin; 1340a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay PetscFunctionReturn(0); 1342a30f8f8cSSatish Balay } 1343a30f8f8cSSatish Balay 13446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1345a30f8f8cSSatish Balay 13464a2ae208SSatish Balay #undef __FUNCT__ 13474a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1348dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1349a30f8f8cSSatish Balay { 1350a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1351a30f8f8cSSatish Balay Mat a,b,c,d; 1352a30f8f8cSSatish Balay PetscTruth flg; 1353dfbe8321SBarry Smith PetscErrorCode ierr; 1354a30f8f8cSSatish Balay 1355a30f8f8cSSatish Balay PetscFunctionBegin; 1356a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1357a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1358a30f8f8cSSatish Balay 1359a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1360abc0a331SBarry Smith if (flg) { 1361a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay } 13637adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1364a30f8f8cSSatish Balay PetscFunctionReturn(0); 1365a30f8f8cSSatish Balay } 1366a30f8f8cSSatish Balay 13674a2ae208SSatish Balay #undef __FUNCT__ 13683c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13693c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13703c896bc6SHong Zhang { 13713c896bc6SHong Zhang PetscErrorCode ierr; 13723c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13733c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13743c896bc6SHong Zhang 13753c896bc6SHong Zhang PetscFunctionBegin; 13763c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13773c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1378d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13793c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1380d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13813c896bc6SHong Zhang } else { 13823c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13833c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13843c896bc6SHong Zhang } 13853c896bc6SHong Zhang PetscFunctionReturn(0); 13863c896bc6SHong Zhang } 13873c896bc6SHong Zhang 13883c896bc6SHong Zhang #undef __FUNCT__ 13894a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1390dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1391273d9f13SBarry Smith { 1392dfbe8321SBarry Smith PetscErrorCode ierr; 1393273d9f13SBarry Smith 1394273d9f13SBarry Smith PetscFunctionBegin; 13957edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1396273d9f13SBarry Smith PetscFunctionReturn(0); 1397273d9f13SBarry Smith } 1398a5e6ed63SBarry Smith 13994fe895cdSHong Zhang #include "petscblaslapack.h" 14004fe895cdSHong Zhang #undef __FUNCT__ 14014fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14024fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14034fe895cdSHong Zhang { 14044fe895cdSHong Zhang PetscErrorCode ierr; 14054fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14064fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14074fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14084fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14094fe895cdSHong Zhang 14104fe895cdSHong Zhang PetscFunctionBegin; 14114fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14124fe895cdSHong Zhang PetscScalar alpha = a; 14134fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14144fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14154fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14164fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14174fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14184fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14194fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14204fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14214fe895cdSHong Zhang } else { 1422d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14234fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1424d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14254fe895cdSHong Zhang } 14264fe895cdSHong Zhang PetscFunctionReturn(0); 14274fe895cdSHong Zhang } 14284fe895cdSHong Zhang 1429a5e6ed63SBarry Smith #undef __FUNCT__ 1430a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14311302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1432a5e6ed63SBarry Smith { 14336849ba73SBarry Smith PetscErrorCode ierr; 14341302d50aSBarry Smith PetscInt i; 1435a5e6ed63SBarry Smith PetscTruth flg; 1436a5e6ed63SBarry Smith 14376849ba73SBarry Smith PetscFunctionBegin; 1438a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1439a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1440a5e6ed63SBarry Smith if (!flg) { 14411302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1442a5e6ed63SBarry Smith } 1443a5e6ed63SBarry Smith } 1444a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1445a5e6ed63SBarry Smith PetscFunctionReturn(0); 1446a5e6ed63SBarry Smith } 1447a5e6ed63SBarry Smith 1448a5e6ed63SBarry Smith 1449a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1450a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1451a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1452a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1453a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1454a9d4b620SHong Zhang MatMult_MPISBAIJ, 145597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1456431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1457431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 146197304618SKris Buschelman /*10*/ 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 14642798e883SHong Zhang MatRelax_MPISBAIJ, 1465a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 146697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1467a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1468a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1469a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1470a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 147197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1472a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1475a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1476dcf5cc72SBarry Smith /*25*/ 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 148197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1482b5df2d14SHong Zhang 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 148697304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 14914fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1492a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1493d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1494a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14953c896bc6SHong Zhang MatCopy_MPISBAIJ, 14968c07d4e3SBarry Smith /*45*/ 0, 1497a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501521d7252SBarry Smith /*50*/ 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 150697304618SKris Buschelman /*55*/ 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 151197304618SKris Buschelman /*60*/ 0, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay 0, 1514357abbc8SBarry Smith 0, 151524d5174aSHong Zhang 0, 151697304618SKris Buschelman /*65*/ 0, 151724d5174aSHong Zhang 0, 151824d5174aSHong Zhang 0, 151924d5174aSHong Zhang 0, 152024d5174aSHong Zhang 0, 1521985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ, 152224d5174aSHong Zhang 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 152697304618SKris Buschelman /*75*/ 0, 152797304618SKris Buschelman 0, 152897304618SKris Buschelman 0, 152997304618SKris Buschelman 0, 153097304618SKris Buschelman 0, 153197304618SKris Buschelman /*80*/ 0, 153297304618SKris Buschelman 0, 153397304618SKris Buschelman 0, 153497304618SKris Buschelman 0, 1535865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1536865e5f61SKris Buschelman /*85*/ 0, 1537865e5f61SKris Buschelman 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 1540865e5f61SKris Buschelman 0, 1541865e5f61SKris Buschelman /*90*/ 0, 1542865e5f61SKris Buschelman 0, 1543865e5f61SKris Buschelman 0, 1544865e5f61SKris Buschelman 0, 1545865e5f61SKris Buschelman 0, 1546865e5f61SKris Buschelman /*95*/ 0, 1547865e5f61SKris Buschelman 0, 1548865e5f61SKris Buschelman 0, 154999cafbc1SBarry Smith 0, 155099cafbc1SBarry Smith 0, 155199cafbc1SBarry Smith /*100*/0, 155299cafbc1SBarry Smith 0, 155399cafbc1SBarry Smith 0, 155499cafbc1SBarry Smith 0, 155599cafbc1SBarry Smith 0, 155699cafbc1SBarry Smith /*105*/0, 155799cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1558d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1559d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1560d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 156199cafbc1SBarry Smith }; 1562a30f8f8cSSatish Balay 1563a30f8f8cSSatish Balay 1564a30f8f8cSSatish Balay EXTERN_C_BEGIN 15654a2ae208SSatish Balay #undef __FUNCT__ 15664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1567be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1568a30f8f8cSSatish Balay { 1569a30f8f8cSSatish Balay PetscFunctionBegin; 1570a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1571a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1572a30f8f8cSSatish Balay PetscFunctionReturn(0); 1573a30f8f8cSSatish Balay } 1574a30f8f8cSSatish Balay EXTERN_C_END 1575a30f8f8cSSatish Balay 1576273d9f13SBarry Smith EXTERN_C_BEGIN 15774a2ae208SSatish Balay #undef __FUNCT__ 1578a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1579be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1580a23d5eceSKris Buschelman { 1581a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1582dfbe8321SBarry Smith PetscErrorCode ierr; 15831302d50aSBarry Smith PetscInt i,mbs,Mbs; 1584a23d5eceSKris Buschelman 1585a23d5eceSKris Buschelman PetscFunctionBegin; 15867adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 15878c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 15888c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1589a23d5eceSKris Buschelman 1590a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1591a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1592a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 159377431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 159477431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1595899cda47SBarry Smith 1596899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 15976148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 15986148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 1599899cda47SBarry Smith 1600a23d5eceSKris Buschelman if (d_nnz) { 1601899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 160277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1603a23d5eceSKris Buschelman } 1604a23d5eceSKris Buschelman } 1605a23d5eceSKris Buschelman if (o_nnz) { 1606899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 160777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1608a23d5eceSKris Buschelman } 1609a23d5eceSKris Buschelman } 1610a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1611a23d5eceSKris Buschelman 1612a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1613899cda47SBarry Smith mbs = B->rmap.n/bs; 1614899cda47SBarry Smith Mbs = B->rmap.N/bs; 1615899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1616899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman 1619899cda47SBarry Smith B->rmap.bs = bs; 1620a23d5eceSKris Buschelman b->bs2 = bs*bs; 1621a23d5eceSKris Buschelman b->mbs = mbs; 1622a23d5eceSKris Buschelman b->nbs = mbs; 1623a23d5eceSKris Buschelman b->Mbs = Mbs; 1624a23d5eceSKris Buschelman b->Nbs = Mbs; 1625a23d5eceSKris Buschelman 1626a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1627899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1628a23d5eceSKris Buschelman } 1629899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1630899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1631a23d5eceSKris Buschelman 1632899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1633899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1634a23d5eceSKris Buschelman 1635f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1636899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16379c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1638c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 163952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16409c097c71SKris Buschelman 1641f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1642899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16434aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1644589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 164552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1646a23d5eceSKris Buschelman 1647a23d5eceSKris Buschelman /* build cache for off array entries formed */ 16487adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1649a23d5eceSKris Buschelman 1650a23d5eceSKris Buschelman PetscFunctionReturn(0); 1651a23d5eceSKris Buschelman } 1652a23d5eceSKris Buschelman EXTERN_C_END 1653a23d5eceSKris Buschelman 16540bad9183SKris Buschelman /*MC 1655fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16560bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16570bad9183SKris Buschelman 16580bad9183SKris Buschelman Options Database Keys: 16590bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16600bad9183SKris Buschelman 16610bad9183SKris Buschelman Level: beginner 16620bad9183SKris Buschelman 16630bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16640bad9183SKris Buschelman M*/ 16650bad9183SKris Buschelman 1666a23d5eceSKris Buschelman EXTERN_C_BEGIN 1667a23d5eceSKris Buschelman #undef __FUNCT__ 16684a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1669be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1670b5df2d14SHong Zhang { 1671b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1672dfbe8321SBarry Smith PetscErrorCode ierr; 1673b5df2d14SHong Zhang PetscTruth flg; 1674b5df2d14SHong Zhang 1675b5df2d14SHong Zhang PetscFunctionBegin; 1676b5df2d14SHong Zhang 167738f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1678b0a32e0cSBarry Smith B->data = (void*)b; 1679b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1680b5df2d14SHong Zhang 1681b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1682b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1683b5df2d14SHong Zhang B->mapping = 0; 1684b5df2d14SHong Zhang B->factor = 0; 1685b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1686b5df2d14SHong Zhang 1687b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16887adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16897adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1690b5df2d14SHong Zhang 1691b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1692899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1693b5df2d14SHong Zhang 1694b5df2d14SHong Zhang /* build cache for off array entries formed */ 16957adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1696b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1697b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1698b5df2d14SHong Zhang b->garray = PETSC_NULL; 1699b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1700b5df2d14SHong Zhang 1701f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1702b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 170364a35ccbSBarry Smith b->setvalueslen = 0; 1704b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1705b5df2d14SHong Zhang #endif 1706b5df2d14SHong Zhang 1707b5df2d14SHong Zhang /* stuff used in block assembly */ 1708b5df2d14SHong Zhang b->barray = 0; 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1711b5df2d14SHong Zhang b->lvec = 0; 1712b5df2d14SHong Zhang b->Mvctx = 0; 171340781036SHong Zhang b->slvec0 = 0; 171440781036SHong Zhang b->slvec0b = 0; 171540781036SHong Zhang b->slvec1 = 0; 171640781036SHong Zhang b->slvec1a = 0; 171740781036SHong Zhang b->slvec1b = 0; 171840781036SHong Zhang b->sMvctx = 0; 1719b5df2d14SHong Zhang 1720b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1721b5df2d14SHong Zhang b->rowindices = 0; 1722b5df2d14SHong Zhang b->rowvalues = 0; 1723b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1724b5df2d14SHong Zhang 1725b5df2d14SHong Zhang /* hash table stuff */ 1726b5df2d14SHong Zhang b->ht = 0; 1727b5df2d14SHong Zhang b->hd = 0; 1728b5df2d14SHong Zhang b->ht_size = 0; 1729b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1730b5df2d14SHong Zhang b->ht_fact = 0; 1731b5df2d14SHong Zhang b->ht_total_ct = 0; 1732b5df2d14SHong Zhang b->ht_insert_ct = 0; 1733b5df2d14SHong Zhang 173459ffdab8SBarry Smith b->in_loc = 0; 173559ffdab8SBarry Smith b->v_loc = 0; 173659ffdab8SBarry Smith b->n_loc = 0; 17377adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17388c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1739b5df2d14SHong Zhang if (flg) { 1740f6275e2eSBarry Smith PetscReal fact = 1.39; 17414e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17428c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1743b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1744b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17451e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1746b5df2d14SHong Zhang } 17478c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17488c07d4e3SBarry Smith 1749b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1750b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1751b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1752b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1753b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1754b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1755b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1756b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1757b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1758a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1759a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1760a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 176123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 176223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 176323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 176423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 176517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1766b5df2d14SHong Zhang PetscFunctionReturn(0); 1767b5df2d14SHong Zhang } 1768273d9f13SBarry Smith EXTERN_C_END 1769b5df2d14SHong Zhang 1770209238afSKris Buschelman /*MC 1771002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1772209238afSKris Buschelman 1773209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1774209238afSKris Buschelman and MATMPISBAIJ otherwise. 1775209238afSKris Buschelman 1776209238afSKris Buschelman Options Database Keys: 1777209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1778209238afSKris Buschelman 1779209238afSKris Buschelman Level: beginner 1780209238afSKris Buschelman 1781209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1782209238afSKris Buschelman M*/ 1783209238afSKris Buschelman 1784209238afSKris Buschelman EXTERN_C_BEGIN 1785209238afSKris Buschelman #undef __FUNCT__ 1786209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1787be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1788dfbe8321SBarry Smith { 17896849ba73SBarry Smith PetscErrorCode ierr; 17901302d50aSBarry Smith PetscMPIInt size; 1791209238afSKris Buschelman 1792209238afSKris Buschelman PetscFunctionBegin; 17937adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1794209238afSKris Buschelman if (size == 1) { 1795209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1796209238afSKris Buschelman } else { 1797209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1798209238afSKris Buschelman } 1799209238afSKris Buschelman PetscFunctionReturn(0); 1800209238afSKris Buschelman } 1801209238afSKris Buschelman EXTERN_C_END 1802209238afSKris Buschelman 18034a2ae208SSatish Balay #undef __FUNCT__ 18044a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1805b5df2d14SHong Zhang /*@C 1806b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1807b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1808b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1809b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1810b5df2d14SHong Zhang 1811b5df2d14SHong Zhang Collective on Mat 1812b5df2d14SHong Zhang 1813b5df2d14SHong Zhang Input Parameters: 1814b5df2d14SHong Zhang + A - the matrix 1815b5df2d14SHong Zhang . bs - size of blockk 1816b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1817b5df2d14SHong Zhang submatrix (same for all local rows) 1818b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18196d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18206d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18216d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1822b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1823b5df2d14SHong Zhang submatrix (same for all local rows). 1824b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1825b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1826b5df2d14SHong Zhang each block row) or PETSC_NULL. 1827b5df2d14SHong Zhang 1828b5df2d14SHong Zhang 1829b5df2d14SHong Zhang Options Database Keys: 1830b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1831b5df2d14SHong Zhang block calculations (much slower) 1832b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1833b5df2d14SHong Zhang 1834b5df2d14SHong Zhang Notes: 1835b5df2d14SHong Zhang 1836b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1837b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1838b5df2d14SHong Zhang 183949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 184049a6f317SBarry Smith 1841b5df2d14SHong Zhang Storage Information: 1842b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1843b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1844b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1845b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1846b5df2d14SHong Zhang 1847b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1848b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1849b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1850b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1851b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1852b5df2d14SHong Zhang 1853*aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1854*aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1855*aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1856*aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1857*aa95bbe8SBarry Smith 1858b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1859b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1860b5df2d14SHong Zhang 1861b5df2d14SHong Zhang .vb 1862b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1863b5df2d14SHong Zhang ------------------- 1864b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1865b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1866b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1867b5df2d14SHong Zhang ------------------- 1868b5df2d14SHong Zhang .ve 1869b5df2d14SHong Zhang 1870b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1871b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18726d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18736d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1874b5df2d14SHong Zhang 18756d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18766d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1877b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1878b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1879b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1880b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1881b5df2d14SHong Zhang matrices. 1882b5df2d14SHong Zhang 1883b5df2d14SHong Zhang Level: intermediate 1884b5df2d14SHong Zhang 1885b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1886b5df2d14SHong Zhang 1887b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1888b5df2d14SHong Zhang @*/ 1889be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1890b5df2d14SHong Zhang { 18911302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1892b5df2d14SHong Zhang 1893b5df2d14SHong Zhang PetscFunctionBegin; 1894a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1895a23d5eceSKris Buschelman if (f) { 1896a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1897b5df2d14SHong Zhang } 1898b5df2d14SHong Zhang PetscFunctionReturn(0); 1899b5df2d14SHong Zhang } 1900b5df2d14SHong Zhang 19014a2ae208SSatish Balay #undef __FUNCT__ 19024a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1903a30f8f8cSSatish Balay /*@C 1904a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1905a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1906a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1907a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1908a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1909a30f8f8cSSatish Balay 1910a30f8f8cSSatish Balay Collective on MPI_Comm 1911a30f8f8cSSatish Balay 1912a30f8f8cSSatish Balay Input Parameters: 1913a30f8f8cSSatish Balay + comm - MPI communicator 1914a30f8f8cSSatish Balay . bs - size of blockk 1915a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1916a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1917a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1918a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1919a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1920a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1921a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1922a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1923a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1924a30f8f8cSSatish Balay submatrix (same for all local rows) 1925a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19266d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19276d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19286d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1929a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1930a30f8f8cSSatish Balay submatrix (same for all local rows). 1931a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1932a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1933a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1934a30f8f8cSSatish Balay 1935a30f8f8cSSatish Balay Output Parameter: 1936a30f8f8cSSatish Balay . A - the matrix 1937a30f8f8cSSatish Balay 1938a30f8f8cSSatish Balay Options Database Keys: 1939a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1940a30f8f8cSSatish Balay block calculations (much slower) 1941a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1942a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1943a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1944a30f8f8cSSatish Balay 1945175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1946175b88e8SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely 1947175b88e8SBarry Smith true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles. 1948175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1949175b88e8SBarry Smith 1950a30f8f8cSSatish Balay Notes: 1951d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19526d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1953d1be2dadSMatthew Knepley 1954a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1955a30f8f8cSSatish Balay (possibly both). 1956a30f8f8cSSatish Balay 1957a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1958a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1959a30f8f8cSSatish Balay 196049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 196149a6f317SBarry Smith 1962a30f8f8cSSatish Balay Storage Information: 1963a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1964a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1965a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1966a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1967a30f8f8cSSatish Balay 1968a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1969a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1970a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1971a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1972a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1973a30f8f8cSSatish Balay 1974a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1975a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay .vb 1978a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1979a30f8f8cSSatish Balay ------------------- 1980a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1981a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1982a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1983a30f8f8cSSatish Balay ------------------- 1984a30f8f8cSSatish Balay .ve 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1987a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19886d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19896d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1990a30f8f8cSSatish Balay 19916d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19926d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1993a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1994a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1995a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1996a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1997a30f8f8cSSatish Balay matrices. 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay Level: intermediate 2000a30f8f8cSSatish Balay 2001a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2002a30f8f8cSSatish Balay 2003a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2004a30f8f8cSSatish Balay @*/ 2005a30f8f8cSSatish Balay 2006be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2007a30f8f8cSSatish Balay { 20086849ba73SBarry Smith PetscErrorCode ierr; 20091302d50aSBarry Smith PetscMPIInt size; 2010a30f8f8cSSatish Balay 2011a30f8f8cSSatish Balay PetscFunctionBegin; 2012f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2013f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2014273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2015273d9f13SBarry Smith if (size > 1) { 2016b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2017b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2018273d9f13SBarry Smith } else { 2019273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2020273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2021273d9f13SBarry Smith } 2022a30f8f8cSSatish Balay PetscFunctionReturn(0); 2023a30f8f8cSSatish Balay } 2024a30f8f8cSSatish Balay 2025a30f8f8cSSatish Balay 20264a2ae208SSatish Balay #undef __FUNCT__ 20274a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20286849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2029a30f8f8cSSatish Balay { 2030a30f8f8cSSatish Balay Mat mat; 2031a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2032dfbe8321SBarry Smith PetscErrorCode ierr; 2033899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2034387bc808SHong Zhang PetscScalar *array; 2035a30f8f8cSSatish Balay 2036a30f8f8cSSatish Balay PetscFunctionBegin; 2037a30f8f8cSSatish Balay *newmat = 0; 20387adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2039899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 20407adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20411d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20427adad957SLisandro Dalcin ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 20437adad957SLisandro Dalcin ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2044e1b6402fSHong Zhang 204582327fa8SHong Zhang mat->factor = matin->factor; 2046273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 204782327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20487fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20497fff6886SHong Zhang 2050b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2051a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2052a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2053a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2054a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2055a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2056a30f8f8cSSatish Balay 2057899cda47SBarry Smith 2058a30f8f8cSSatish Balay a->size = oldmat->size; 2059a30f8f8cSSatish Balay a->rank = oldmat->rank; 2060a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2061a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2062a30f8f8cSSatish Balay a->rowindices = 0; 2063a30f8f8cSSatish Balay a->rowvalues = 0; 2064a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2065a30f8f8cSSatish Balay a->barray = 0; 2066899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2067899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2068899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2069899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2070a30f8f8cSSatish Balay 2071a30f8f8cSSatish Balay /* hash table stuff */ 2072a30f8f8cSSatish Balay a->ht = 0; 2073a30f8f8cSSatish Balay a->hd = 0; 2074a30f8f8cSSatish Balay a->ht_size = 0; 2075a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2076a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2077a30f8f8cSSatish Balay a->ht_total_ct = 0; 2078a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2079a30f8f8cSSatish Balay 2080899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 20817adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 20827adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2083a30f8f8cSSatish Balay if (oldmat->colmap) { 2084a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2085a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2086a30f8f8cSSatish Balay #else 20871302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 208852e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20891302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2090a30f8f8cSSatish Balay #endif 2091a30f8f8cSSatish Balay } else a->colmap = 0; 2092387bc808SHong Zhang 2093a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20941302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 209552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20961302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2097a30f8f8cSSatish Balay } else a->garray = 0; 2098a30f8f8cSSatish Balay 2099a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 210052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2101a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 210252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 210382327fa8SHong Zhang 210482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 210552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 210682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 210752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2108387bc808SHong Zhang 2109387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21101ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2111387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2112387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21131ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21141ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2115387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21161ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 211752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 211952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 212152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2122387bc808SHong Zhang 2123387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2124387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2125387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 212652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 212782327fa8SHong Zhang 2128a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 212952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2130a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 213152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21327adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2133a30f8f8cSSatish Balay *newmat = mat; 2134a30f8f8cSSatish Balay PetscFunctionReturn(0); 2135a30f8f8cSSatish Balay } 2136a30f8f8cSSatish Balay 2137a30f8f8cSSatish Balay #include "petscsys.h" 2138a30f8f8cSSatish Balay 21394a2ae208SSatish Balay #undef __FUNCT__ 21404a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2141f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2142a30f8f8cSSatish Balay { 2143a30f8f8cSSatish Balay Mat A; 21446849ba73SBarry Smith PetscErrorCode ierr; 214513f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 214687828ca2SBarry Smith PetscScalar *vals,*buf; 2147a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2148a30f8f8cSSatish Balay MPI_Status status; 21492fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 215013f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21512fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21521302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21531302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21541302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 215513f74950SBarry Smith int fd; 2156a30f8f8cSSatish Balay 2157a30f8f8cSSatish Balay PetscFunctionBegin; 215877925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21598c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21608c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2161a30f8f8cSSatish Balay 2162a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay if (!rank) { 2165b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2167552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2168a30f8f8cSSatish Balay if (header[3] < 0) { 216929bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2170a30f8f8cSSatish Balay } 2171a30f8f8cSSatish Balay } 2172a30f8f8cSSatish Balay 2173a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2175a30f8f8cSSatish Balay 217629bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay /* 2179a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2180a30f8f8cSSatish Balay divisible by the blocksize 2181a30f8f8cSSatish Balay */ 2182a30f8f8cSSatish Balay Mbs = M/bs; 2183a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2184a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2185a30f8f8cSSatish Balay else Mbs++; 2186a30f8f8cSSatish Balay if (extra_rows &&!rank) { 21871e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2188a30f8f8cSSatish Balay } 2189a30f8f8cSSatish Balay 2190a30f8f8cSSatish Balay /* determine ownership of all rows */ 2191a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2192a30f8f8cSSatish Balay m = mbs*bs; 2193a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay browners = rowners + size + 1; 2195a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay rowners[0] = 0; 2197a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2198a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2199a30f8f8cSSatish Balay rstart = rowners[rank]; 2200a30f8f8cSSatish Balay rend = rowners[rank+1]; 2201a30f8f8cSSatish Balay 2202a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22032fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay if (!rank) { 22051302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2206a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2208a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2210a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay } else { 2213a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2214a30f8f8cSSatish Balay } 2215a30f8f8cSSatish Balay 22160222edb1SHong Zhang if (!rank) { /* procs[0] */ 2217a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22181302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22191302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2220a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2221a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2222a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2223a30f8f8cSSatish Balay } 2224a30f8f8cSSatish Balay } 2225a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay 2227a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2228a30f8f8cSSatish Balay maxnz = 0; 2229a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2230a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2231a30f8f8cSSatish Balay } 22321302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay 2234a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2235a30f8f8cSSatish Balay nz = procsnz[0]; 22361302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2237a30f8f8cSSatish Balay mycols = ibuf; 2238a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2239a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2240a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2241a30f8f8cSSatish Balay 2242a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2243a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2244a30f8f8cSSatish Balay nz = procsnz[i]; 2245a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2246a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2247a30f8f8cSSatish Balay } 2248a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2249a30f8f8cSSatish Balay if (size != 1) { 2250a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2251a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2253a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2254a30f8f8cSSatish Balay } 2255a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22560222edb1SHong Zhang } else { /* procs[i], i>0 */ 2257a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2258a30f8f8cSSatish Balay nz = 0; 2259a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2260a30f8f8cSSatish Balay nz += locrowlens[i]; 2261a30f8f8cSSatish Balay } 22621302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay mycols = ibuf; 2264a30f8f8cSSatish Balay /* receive message of column indices*/ 2265a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2266a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 226729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2268a30f8f8cSSatish Balay } 2269a30f8f8cSSatish Balay 2270a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22711302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22731302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22741302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2275a30f8f8cSSatish Balay masked1 = mask + Mbs; 2276a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2277a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2278a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2279a30f8f8cSSatish Balay dcount = 0; 2280a30f8f8cSSatish Balay odcount = 0; 2281a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2282a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2283a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22840222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2285a30f8f8cSSatish Balay if (!mask[tmp]) { 2286a30f8f8cSSatish Balay mask[tmp] = 1; 22870222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22880222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2289a30f8f8cSSatish Balay } 2290a30f8f8cSSatish Balay } 2291a30f8f8cSSatish Balay rowcount++; 2292a30f8f8cSSatish Balay } 2293a30f8f8cSSatish Balay 22940222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22950222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2296a30f8f8cSSatish Balay 2297a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2298a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2299a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2300a30f8f8cSSatish Balay } 2301a30f8f8cSSatish Balay 2302a30f8f8cSSatish Balay /* create our matrix */ 2303f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2304f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 230522191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 230622191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay if (!rank) { 230987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2310a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2311a30f8f8cSSatish Balay nz = procsnz[0]; 2312a30f8f8cSSatish Balay vals = buf; 2313a30f8f8cSSatish Balay mycols = ibuf; 2314a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2315a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2316a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2317a30f8f8cSSatish Balay 2318a30f8f8cSSatish Balay /* insert into matrix */ 2319a30f8f8cSSatish Balay jj = rstart*bs; 2320a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23217e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2322a30f8f8cSSatish Balay mycols += locrowlens[i]; 2323a30f8f8cSSatish Balay vals += locrowlens[i]; 2324a30f8f8cSSatish Balay jj++; 2325a30f8f8cSSatish Balay } 23267e06b45fSHong Zhang 2327a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2328a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2329a30f8f8cSSatish Balay nz = procsnz[i]; 2330a30f8f8cSSatish Balay vals = buf; 2331a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23327adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2333a30f8f8cSSatish Balay } 2334a30f8f8cSSatish Balay /* the last proc */ 2335a30f8f8cSSatish Balay if (size != 1){ 2336a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2337a30f8f8cSSatish Balay vals = buf; 2338a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2339a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23407adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2341a30f8f8cSSatish Balay } 2342a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23437e06b45fSHong Zhang 2344a30f8f8cSSatish Balay } else { 2345a30f8f8cSSatish Balay /* receive numeric values */ 234687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2347a30f8f8cSSatish Balay 2348a30f8f8cSSatish Balay /* receive message of values*/ 2349a30f8f8cSSatish Balay vals = buf; 2350a30f8f8cSSatish Balay mycols = ibuf; 23517adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2352a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 235329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2354a30f8f8cSSatish Balay 2355a30f8f8cSSatish Balay /* insert into matrix */ 2356a30f8f8cSSatish Balay jj = rstart*bs; 2357a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2358a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay mycols += locrowlens[i]; 2360a30f8f8cSSatish Balay vals += locrowlens[i]; 2361a30f8f8cSSatish Balay jj++; 2362a30f8f8cSSatish Balay } 2363a30f8f8cSSatish Balay } 23647e06b45fSHong Zhang 2365a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2367a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2368a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2369a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2370a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2372a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 237322191285SKris Buschelman *newmat = A; 2374a30f8f8cSSatish Balay PetscFunctionReturn(0); 2375a30f8f8cSSatish Balay } 2376a30f8f8cSSatish Balay 23774a2ae208SSatish Balay #undef __FUNCT__ 23784a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2379dcf5cc72SBarry Smith /*XXXXX@ 2380a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2381a30f8f8cSSatish Balay 2382a30f8f8cSSatish Balay Input Parameters: 2383a30f8f8cSSatish Balay . mat - the matrix 2384a30f8f8cSSatish Balay . fact - factor 2385a30f8f8cSSatish Balay 2386a30f8f8cSSatish Balay Collective on Mat 2387a30f8f8cSSatish Balay 2388a30f8f8cSSatish Balay Level: advanced 2389a30f8f8cSSatish Balay 2390a30f8f8cSSatish Balay Notes: 2391a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2392a30f8f8cSSatish Balay 2393a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2394a30f8f8cSSatish Balay 2395a30f8f8cSSatish Balay .seealso: MatSetOption() 2396dcf5cc72SBarry Smith @XXXXX*/ 2397dcf5cc72SBarry Smith 239824d5174aSHong Zhang 23994a2ae208SSatish Balay #undef __FUNCT__ 2400985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2401985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 240224d5174aSHong Zhang { 240324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2404f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2405ca54ac64SHong Zhang PetscReal atmp; 240687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2407dfbe8321SBarry Smith PetscErrorCode ierr; 24081302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24091302d50aSBarry Smith PetscMPIInt rank,size; 24101302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 241187828ca2SBarry Smith PetscScalar *va; 24128a1c53f2SBarry Smith MatScalar *ba; 2413f4c0e9e4SHong Zhang MPI_Status stat; 241424d5174aSHong Zhang 241524d5174aSHong Zhang PetscFunctionBegin; 2416985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2417985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24181ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2419f4c0e9e4SHong Zhang 24207adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24217adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2422f4c0e9e4SHong Zhang 2423899cda47SBarry Smith bs = A->rmap.bs; 2424f4c0e9e4SHong Zhang mbs = a->mbs; 2425f4c0e9e4SHong Zhang Mbs = a->Mbs; 2426f4c0e9e4SHong Zhang ba = b->a; 2427f4c0e9e4SHong Zhang bi = b->i; 2428f4c0e9e4SHong Zhang bj = b->j; 2429f4c0e9e4SHong Zhang 2430f4c0e9e4SHong Zhang /* find ownerships */ 2431899cda47SBarry Smith rowners_bs = A->rmap.range; 2432f4c0e9e4SHong Zhang 2433f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 243482502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2435ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2436f4c0e9e4SHong Zhang 2437f4c0e9e4SHong Zhang /* row_max for B */ 2438b8475685SHong Zhang if (rank != size-1){ 2439f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2440f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2441f4c0e9e4SHong Zhang brow = bs*i; 2442f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2443f4c0e9e4SHong Zhang bcol = bs*(*bj); 2444f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2445ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 244604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2447f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2448f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2449ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2450ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2451f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2452f4c0e9e4SHong Zhang } 2453f4c0e9e4SHong Zhang } 2454f4c0e9e4SHong Zhang bj++; 2455f4c0e9e4SHong Zhang } 2456f4c0e9e4SHong Zhang } 2457f4c0e9e4SHong Zhang 2458f4c0e9e4SHong Zhang /* send values to its owners */ 2459f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2460f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2461ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24627adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2463ca54ac64SHong Zhang } 2464f4c0e9e4SHong Zhang } 2465f4c0e9e4SHong Zhang 2466f4c0e9e4SHong Zhang /* receive values */ 2467ca54ac64SHong Zhang if (rank){ 2468f4c0e9e4SHong Zhang rvalues = work; 2469ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2470f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24717adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2472f4c0e9e4SHong Zhang /* process values */ 2473f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2474ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2475f4c0e9e4SHong Zhang } 2476f4c0e9e4SHong Zhang } 2477ca54ac64SHong Zhang } 2478f4c0e9e4SHong Zhang 24791ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2480ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 248124d5174aSHong Zhang PetscFunctionReturn(0); 248224d5174aSHong Zhang } 24832798e883SHong Zhang 24842798e883SHong Zhang #undef __FUNCT__ 24852798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24861302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24872798e883SHong Zhang { 24882798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2489dfbe8321SBarry Smith PetscErrorCode ierr; 2490899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2491efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2492ffe4fb16SHong Zhang Vec bb1; 2493ffe4fb16SHong Zhang 2494ffe4fb16SHong Zhang PetscFunctionBegin; 249577431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2496ffe4fb16SHong Zhang if (bs > 1) 2497ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2498ffe4fb16SHong Zhang 2499ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2500ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2501ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2502ffe4fb16SHong Zhang its--; 2503ffe4fb16SHong Zhang } 2504ffe4fb16SHong Zhang 2505ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2506ffe4fb16SHong Zhang while (its--){ 2507ffe4fb16SHong Zhang 2508ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2509ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2510ffe4fb16SHong Zhang 2511ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25121ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25131ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2514ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25151ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2516ffe4fb16SHong Zhang 2517efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2518ffe4fb16SHong Zhang 2519ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25201ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25211ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2522ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25231ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2524ffe4fb16SHong Zhang 2525ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25262dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2527ffe4fb16SHong Zhang 2528ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25291ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25301ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2531ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2532ffe4fb16SHong Zhang 2533ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2534ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang 2536ffe4fb16SHong Zhang /* local diagonal sweep */ 2537ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2538ffe4fb16SHong Zhang } 2539ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2540ffe4fb16SHong Zhang } else { 2541ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2542ffe4fb16SHong Zhang } 2543ffe4fb16SHong Zhang PetscFunctionReturn(0); 2544ffe4fb16SHong Zhang } 2545ffe4fb16SHong Zhang 2546ffe4fb16SHong Zhang #undef __FUNCT__ 2547ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25481302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2549ffe4fb16SHong Zhang { 2550ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2551dfbe8321SBarry Smith PetscErrorCode ierr; 25522798e883SHong Zhang Vec lvec1,bb1; 25532798e883SHong Zhang 25542798e883SHong Zhang PetscFunctionBegin; 255577431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2556899cda47SBarry Smith if (matin->rmap.bs > 1) 25572798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25582798e883SHong Zhang 2559c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25602798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2561bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25622798e883SHong Zhang its--; 25632798e883SHong Zhang } 25642798e883SHong Zhang 25652798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25662798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25672798e883SHong Zhang while (its--){ 2568ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25692798e883SHong Zhang 25702798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25712798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2572efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25732798e883SHong Zhang 2574ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25752798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2576ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25772798e883SHong Zhang 25782798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2579efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25802798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25812798e883SHong Zhang 2582ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25832798e883SHong Zhang 2584c14dc6b6SHong Zhang /* diagonal sweep */ 2585bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25862798e883SHong Zhang } 25872798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25882798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2589c14dc6b6SHong Zhang } else { 2590c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2591c14dc6b6SHong Zhang } 25922798e883SHong Zhang PetscFunctionReturn(0); 25932798e883SHong Zhang } 25942798e883SHong Zhang 2595