xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision aae456db49e72798f90b49c19f8e8ffd0b71bcb0)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
364a2ae208SSatish Balay #undef __FUNCT__
374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
387087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
39a30f8f8cSSatish Balay {
40f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
41dfbe8321SBarry Smith   PetscErrorCode ierr;
42a30f8f8cSSatish Balay 
43a30f8f8cSSatish Balay   PetscFunctionBegin;
44a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
45a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
46a30f8f8cSSatish Balay   PetscFunctionReturn(0);
47a30f8f8cSSatish Balay }
48a30f8f8cSSatish Balay 
49a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
50a30f8f8cSSatish Balay   { \
51a30f8f8cSSatish Balay  \
52a30f8f8cSSatish Balay     brow = row/bs;  \
53a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
54a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
55a30f8f8cSSatish Balay     bcol = col/bs; \
56a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
57a30f8f8cSSatish Balay     low  = 0; high = nrow; \
58a30f8f8cSSatish Balay     while (high-low > 3) { \
59a30f8f8cSSatish Balay       t = (low+high)/2; \
60a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
61a30f8f8cSSatish Balay       else              low  = t; \
62a30f8f8cSSatish Balay     } \
63a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
64a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
65a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
66a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
67a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
68a30f8f8cSSatish Balay         else                    *bap  = value;  \
69a30f8f8cSSatish Balay         goto a_noinsert; \
70a30f8f8cSSatish Balay       } \
71a30f8f8cSSatish Balay     } \
72a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
73e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
74fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
75a30f8f8cSSatish Balay     N = nrow++ - 1;  \
76a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
77a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
78a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
79a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
80a30f8f8cSSatish Balay     } \
81a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
82a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
83a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
84e56f5c9eSBarry Smith     A->nonzerostate++;\
85a30f8f8cSSatish Balay a_noinsert:; \
86a30f8f8cSSatish Balay     ailen[brow] = nrow; \
87a30f8f8cSSatish Balay   }
88e5e170daSBarry Smith 
89a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
90a30f8f8cSSatish Balay   { \
91a30f8f8cSSatish Balay     brow = row/bs;  \
92a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
93a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
94a30f8f8cSSatish Balay     bcol = col/bs; \
95a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
96a30f8f8cSSatish Balay     low  = 0; high = nrow; \
97a30f8f8cSSatish Balay     while (high-low > 3) { \
98a30f8f8cSSatish Balay       t = (low+high)/2; \
99a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
100a30f8f8cSSatish Balay       else              low  = t; \
101a30f8f8cSSatish Balay     } \
102a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
103a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
104a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
105a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
106a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
107a30f8f8cSSatish Balay         else                    *bap  = value;  \
108a30f8f8cSSatish Balay         goto b_noinsert; \
109a30f8f8cSSatish Balay       } \
110a30f8f8cSSatish Balay     } \
111a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
112e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
113fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
114a30f8f8cSSatish Balay     N = nrow++ - 1;  \
115a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
116a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
117a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
118a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
119a30f8f8cSSatish Balay     } \
120a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
121a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
122a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
123e56f5c9eSBarry Smith     B->nonzerostate++;\
124a30f8f8cSSatish Balay b_noinsert:; \
125a30f8f8cSSatish Balay     bilen[brow] = nrow; \
126a30f8f8cSSatish Balay   }
127a30f8f8cSSatish Balay 
128a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
129a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
130a30f8f8cSSatish Balay */
1314a2ae208SSatish Balay #undef __FUNCT__
132dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
133dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
134a30f8f8cSSatish Balay {
135a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
136a30f8f8cSSatish Balay   MatScalar      value;
137ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
138dfbe8321SBarry Smith   PetscErrorCode ierr;
1391302d50aSBarry Smith   PetscInt       i,j,row,col;
140d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
141d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
142d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
143a30f8f8cSSatish Balay 
144a30f8f8cSSatish Balay   /* Some Variables required in the macro */
145a30f8f8cSSatish Balay   Mat          A     = baij->A;
146a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1471302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
148a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   Mat         B     = baij->B;
151a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1521302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
153a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
154a30f8f8cSSatish Balay 
1551302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1561302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
157a30f8f8cSSatish Balay   MatScalar *ap,*bap;
158a30f8f8cSSatish Balay 
159a30f8f8cSSatish Balay   /* for stash */
1600298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1610298fd71SBarry Smith   MatScalar *v_loc = NULL;
162a30f8f8cSSatish Balay 
163a30f8f8cSSatish Balay   PetscFunctionBegin;
164a30f8f8cSSatish Balay   if (!baij->donotstash) {
16559ffdab8SBarry Smith     if (n > baij->n_loc) {
16659ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
16759ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
168785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
169785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
17026fbe8dcSKarl Rupp 
17159ffdab8SBarry Smith       baij->n_loc = n;
17259ffdab8SBarry Smith     }
17359ffdab8SBarry Smith     in_loc = baij->in_loc;
17459ffdab8SBarry Smith     v_loc  = baij->v_loc;
175a30f8f8cSSatish Balay   }
176a30f8f8cSSatish Balay 
177a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
178a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1792515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
180e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
181a30f8f8cSSatish Balay #endif
182a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
183a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
184a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18501b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
18601b2bd88SHong Zhang           if (a->ignore_ltriangular) {
18701b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
18826fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
18901b2bd88SHong Zhang         }
190a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
191a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
192a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
193a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
194db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
195db4deed7SKarl Rupp           else             value = v[i+j*m];
196a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
197a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
198a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
200cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
201a30f8f8cSSatish Balay #endif
202a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
203a30f8f8cSSatish Balay           if (mat->was_assembled) {
204a30f8f8cSSatish Balay             if (!baij->colmap) {
205ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
206a30f8f8cSSatish Balay             }
207a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
208a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
20971730473SSatish Balay             col  = col - 1;
210a30f8f8cSSatish Balay #else
21171730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
212a30f8f8cSSatish Balay #endif
213a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
214ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
215a30f8f8cSSatish Balay               col  =  in[j];
216a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
217a30f8f8cSSatish Balay               B    = baij->B;
218a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
219a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
220a30f8f8cSSatish Balay               ba   = b->a;
22171730473SSatish Balay             } else col += in[j]%bs;
222a30f8f8cSSatish Balay           } else col = in[j];
223db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
224db4deed7SKarl Rupp           else             value = v[i+j*m];
225a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
226a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
227a30f8f8cSSatish Balay         }
228a30f8f8cSSatish Balay       }
229a30f8f8cSSatish Balay     } else {  /* off processor entry */
2304cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
231a30f8f8cSSatish Balay       if (!baij->donotstash) {
2325080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
233a30f8f8cSSatish Balay         n_loc          = 0;
234a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
235f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
236a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
237a30f8f8cSSatish Balay           if (roworiented) {
238a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
239a30f8f8cSSatish Balay           } else {
240a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
241a30f8f8cSSatish Balay           }
242a30f8f8cSSatish Balay           n_loc++;
243a30f8f8cSSatish Balay         }
244b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
245a30f8f8cSSatish Balay       }
246a30f8f8cSSatish Balay     }
247a30f8f8cSSatish Balay   }
248a30f8f8cSSatish Balay   PetscFunctionReturn(0);
249a30f8f8cSSatish Balay }
250a30f8f8cSSatish Balay 
2514a2ae208SSatish Balay #undef __FUNCT__
252dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
253dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
254a30f8f8cSSatish Balay {
2550880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
256f15d580aSBarry Smith   const MatScalar *value;
257f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
258ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
259dfbe8321SBarry Smith   PetscErrorCode  ierr;
260899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
261899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
262d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2630880e062SHong Zhang 
264a30f8f8cSSatish Balay   PetscFunctionBegin;
2650880e062SHong Zhang   if (!barray) {
266785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2670880e062SHong Zhang     baij->barray = barray;
2680880e062SHong Zhang   }
2690880e062SHong Zhang 
2700880e062SHong Zhang   if (roworiented) {
2710880e062SHong Zhang     stepval = (n-1)*bs;
2720880e062SHong Zhang   } else {
2730880e062SHong Zhang     stepval = (m-1)*bs;
2740880e062SHong Zhang   }
2750880e062SHong Zhang   for (i=0; i<m; i++) {
2760880e062SHong Zhang     if (im[i] < 0) continue;
2772515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
278e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2790880e062SHong Zhang #endif
2800880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2810880e062SHong Zhang       row = im[i] - rstart;
2820880e062SHong Zhang       for (j=0; j<n; j++) {
283f3f98c53SJed Brown         if (im[i] > in[j]) {
284f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
285e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
286f3f98c53SJed Brown         }
2870880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2880880e062SHong Zhang         if ((roworiented) && (n == 1)) {
289f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2900880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
291f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2920880e062SHong Zhang         } else { /* Here a copy is required */
2930880e062SHong Zhang           if (roworiented) {
2940880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2950880e062SHong Zhang           } else {
2960880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2970880e062SHong Zhang           }
2980880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2990880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3000880e062SHong Zhang               *barray++ = *value++;
3010880e062SHong Zhang             }
3020880e062SHong Zhang           }
3030880e062SHong Zhang           barray -=bs2;
3040880e062SHong Zhang         }
3050880e062SHong Zhang 
3060880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
3070880e062SHong Zhang           col  = in[j] - cstart;
3080880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
30926fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
311cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
323e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
326e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3300880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
336ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col  = in[j];
3380880e062SHong Zhang             }
33926fbe8dcSKarl Rupp           } else col = in[j];
340e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3410880e062SHong Zhang         }
3420880e062SHong Zhang       }
3430880e062SHong Zhang     } else {
3444cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
364d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
368e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
373e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
376a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data--;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
396a30f8f8cSSatish Balay   }
397a30f8f8cSSatish Balay   PetscFunctionReturn(0);
398a30f8f8cSSatish Balay }
399a30f8f8cSSatish Balay 
4004a2ae208SSatish Balay #undef __FUNCT__
4014a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
402dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
403a30f8f8cSSatish Balay {
404a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
405dfbe8321SBarry Smith   PetscErrorCode ierr;
406a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
407a30f8f8cSSatish Balay 
408a30f8f8cSSatish Balay   PetscFunctionBegin;
409a30f8f8cSSatish Balay   if (baij->size == 1) {
410a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
411a30f8f8cSSatish Balay   } else {
412a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
413785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
414a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
415a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
416a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
418ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4198f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
420a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4210b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4220b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4230b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4240b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
425899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
426d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4270b8dc8d2SHong Zhang       MatScalar    *v;
4280b8dc8d2SHong Zhang 
429dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
430d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4310b8dc8d2SHong Zhang       /* Amat */
4320b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4330b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4340b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4350b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4360b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4370b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4380b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4390b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4400b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4410b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4420b8dc8d2SHong Zhang               /* non-diagonal block */
4430b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4440b8dc8d2SHong Zhang             }
4450b8dc8d2SHong Zhang           }
4460b8dc8d2SHong Zhang         }
4470b8dc8d2SHong Zhang       }
4480b8dc8d2SHong Zhang       /* Bmat */
4490b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4500b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4510b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4520b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4530b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4540b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4550b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4560b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4570b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4580b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4590b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4600b8dc8d2SHong Zhang             }
4610b8dc8d2SHong Zhang           }
4620b8dc8d2SHong Zhang         }
4630b8dc8d2SHong Zhang       }
464ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4650b8dc8d2SHong Zhang       *norm = 0.0;
466d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4670b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4680b8dc8d2SHong Zhang       }
46974ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
470f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
471a30f8f8cSSatish Balay   }
472a30f8f8cSSatish Balay   PetscFunctionReturn(0);
473a30f8f8cSSatish Balay }
474a30f8f8cSSatish Balay 
4754a2ae208SSatish Balay #undef __FUNCT__
4764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
477dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
478a30f8f8cSSatish Balay {
479a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
480dfbe8321SBarry Smith   PetscErrorCode ierr;
4811302d50aSBarry Smith   PetscInt       nstash,reallocs;
482a30f8f8cSSatish Balay   InsertMode     addv;
483a30f8f8cSSatish Balay 
484a30f8f8cSSatish Balay   PetscFunctionBegin;
48526fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
486a30f8f8cSSatish Balay 
487a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
488ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
489ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
490a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
491a30f8f8cSSatish Balay 
492d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4931e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
494a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4951e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
496a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4971e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
498a30f8f8cSSatish Balay   PetscFunctionReturn(0);
499a30f8f8cSSatish Balay }
500a30f8f8cSSatish Balay 
5014a2ae208SSatish Balay #undef __FUNCT__
5024a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
503dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
504a30f8f8cSSatish Balay {
505a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
506a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
5076849ba73SBarry Smith   PetscErrorCode ierr;
50813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
509e44c0bd4SBarry Smith   PetscInt       *row,*col;
510ace3abfcSBarry Smith   PetscBool      other_disassembled;
51113f74950SBarry Smith   PetscMPIInt    n;
512ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
513a30f8f8cSSatish Balay   MatScalar      *val;
514a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
515a30f8f8cSSatish Balay 
51691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
517a30f8f8cSSatish Balay   PetscFunctionBegin;
5184cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
519a30f8f8cSSatish Balay     while (1) {
520a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
521a30f8f8cSSatish Balay       if (!flg) break;
522a30f8f8cSSatish Balay 
523a30f8f8cSSatish Balay       for (i=0; i<n;) {
524a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
52526fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
52626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
52726fbe8dcSKarl Rupp         }
528a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
529a30f8f8cSSatish Balay         else       ncols = n-i;
530a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
531dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
532a30f8f8cSSatish Balay         i    = j;
533a30f8f8cSSatish Balay       }
534a30f8f8cSSatish Balay     }
535a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
536a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
537a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
538a30f8f8cSSatish Balay        restore the original flags */
539a30f8f8cSSatish Balay     r1 = baij->roworiented;
540a30f8f8cSSatish Balay     r2 = a->roworiented;
54191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
54226fbe8dcSKarl Rupp 
543a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
544a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
54526fbe8dcSKarl Rupp 
54691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
547a30f8f8cSSatish Balay     while (1) {
548a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
549a30f8f8cSSatish Balay       if (!flg) break;
550a30f8f8cSSatish Balay 
551a30f8f8cSSatish Balay       for (i=0; i<n;) {
552a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
55326fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
55426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
55526fbe8dcSKarl Rupp         }
556a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
557a30f8f8cSSatish Balay         else       ncols = n-i;
558dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
559a30f8f8cSSatish Balay         i    = j;
560a30f8f8cSSatish Balay       }
561a30f8f8cSSatish Balay     }
562a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
56326fbe8dcSKarl Rupp 
564a30f8f8cSSatish Balay     baij->roworiented = r1;
565a30f8f8cSSatish Balay     a->roworiented    = r2;
56626fbe8dcSKarl Rupp 
56791c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
568a30f8f8cSSatish Balay   }
569a30f8f8cSSatish Balay 
570a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
571a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
574a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
575a30f8f8cSSatish Balay   /*
576a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
577a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
578a30f8f8cSSatish Balay   */
579a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
580ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
581a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
582ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     }
584a30f8f8cSSatish Balay   }
585a30f8f8cSSatish Balay 
586a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58740781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
588a30f8f8cSSatish Balay   }
589a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
590a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
591a30f8f8cSSatish Balay 
59274ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
59326fbe8dcSKarl Rupp 
594a30f8f8cSSatish Balay   baij->rowvalues = 0;
5954f9cfa9eSBarry Smith 
5964f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
5974f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
598e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
59909e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
600e56f5c9eSBarry Smith   }
601a30f8f8cSSatish Balay   PetscFunctionReturn(0);
602a30f8f8cSSatish Balay }
603a30f8f8cSSatish Balay 
6047da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6069804daf3SBarry Smith #include <petscdraw.h>
6074a2ae208SSatish Balay #undef __FUNCT__
6084a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6096849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
610a30f8f8cSSatish Balay {
611a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
612dfbe8321SBarry Smith   PetscErrorCode    ierr;
613d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
6147da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
615ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
616b0a32e0cSBarry Smith   PetscViewer       sviewer;
617f3ef73ceSBarry Smith   PetscViewerFormat format;
618a30f8f8cSSatish Balay 
619a30f8f8cSSatish Balay   PetscFunctionBegin;
620251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
621251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
62232077d6dSBarry Smith   if (iascii) {
623b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
624456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
625a30f8f8cSSatish Balay       MatInfo info;
626ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
627a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6287b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6297b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
631e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
633e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
634b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6357b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63607d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
637a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
638a30f8f8cSSatish Balay       PetscFunctionReturn(0);
639fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
64077431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
641a30f8f8cSSatish Balay       PetscFunctionReturn(0);
642c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
643c1490034SHong Zhang       PetscFunctionReturn(0);
644a30f8f8cSSatish Balay     }
645a30f8f8cSSatish Balay   }
646a30f8f8cSSatish Balay 
647a30f8f8cSSatish Balay   if (isdraw) {
648b0a32e0cSBarry Smith     PetscDraw draw;
649ace3abfcSBarry Smith     PetscBool isnull;
650b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
651b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
652a30f8f8cSSatish Balay   }
653a30f8f8cSSatish Balay 
6547da1fb6eSBarry Smith   {
655a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
656a30f8f8cSSatish Balay     Mat          A;
65765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
659d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
660a30f8f8cSSatish Balay     MatScalar    *a;
661a30f8f8cSSatish Balay 
662f204ca49SKris Buschelman     /* Should this be the same type as mat? */
663ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     if (!rank) {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     } else {
667f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     }
669f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6700298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6712b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6723bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
673a30f8f8cSSatish Balay 
674a30f8f8cSSatish Balay     /* copy over the A part */
67565d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
676a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
677785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
678a30f8f8cSSatish Balay 
679a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
680e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
68126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
682a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
683e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
684a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
685dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
68626fbe8dcSKarl Rupp           col++;
68726fbe8dcSKarl Rupp           a += bs;
688a30f8f8cSSatish Balay         }
689a30f8f8cSSatish Balay       }
690a30f8f8cSSatish Balay     }
691a30f8f8cSSatish Balay     /* copy over the B part */
69265d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69365d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
694a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
695e9f7bc9eSHong Zhang 
696e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
69726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
698a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
699a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
700a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
701799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
70226fbe8dcSKarl Rupp           col++;
70326fbe8dcSKarl Rupp           a += bs;
704a30f8f8cSSatish Balay         }
705a30f8f8cSSatish Balay       }
706a30f8f8cSSatish Balay     }
707a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
708a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
709a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
710a30f8f8cSSatish Balay     /*
711a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
712b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
713a30f8f8cSSatish Balay     */
714b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71565d70643SHong Zhang     if (!rank) {
7167da1fb6eSBarry Smith         ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
717a30f8f8cSSatish Balay     }
718b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7196bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
720a30f8f8cSSatish Balay   }
721a30f8f8cSSatish Balay   PetscFunctionReturn(0);
722a30f8f8cSSatish Balay }
723a30f8f8cSSatish Balay 
7244a2ae208SSatish Balay #undef __FUNCT__
7254a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
726dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
727a30f8f8cSSatish Balay {
728dfbe8321SBarry Smith   PetscErrorCode ierr;
729ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
730a30f8f8cSSatish Balay 
731a30f8f8cSSatish Balay   PetscFunctionBegin;
732251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
733251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
734251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
735251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73632077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
737a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
738a30f8f8cSSatish Balay   }
739a30f8f8cSSatish Balay   PetscFunctionReturn(0);
740a30f8f8cSSatish Balay }
741a30f8f8cSSatish Balay 
7424a2ae208SSatish Balay #undef __FUNCT__
7434a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
744dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
745a30f8f8cSSatish Balay {
746a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
747dfbe8321SBarry Smith   PetscErrorCode ierr;
748a30f8f8cSSatish Balay 
749a30f8f8cSSatish Balay   PetscFunctionBegin;
750a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
751d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
752a30f8f8cSSatish Balay #endif
75381bf3e96SHong Zhang   ierr = MatDestroy_Redundant(&mat->redundant);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7566bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7576bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
758a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7596bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
760a30f8f8cSSatish Balay #else
76105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #endif
76305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7646bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7656bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7676bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7725755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7756bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7766bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7776bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
778ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
77905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
780a30f8f8cSSatish Balay #endif
78159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
783899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
784bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
785901853e0SKris Buschelman 
786dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
787bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
788bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
789bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
790bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
791bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
792a30f8f8cSSatish Balay   PetscFunctionReturn(0);
793a30f8f8cSSatish Balay }
794a30f8f8cSSatish Balay 
7954a2ae208SSatish Balay #undef __FUNCT__
796547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
797547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
798547795f9SHong Zhang {
799547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
800547795f9SHong Zhang   PetscErrorCode ierr;
801547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
802547795f9SHong Zhang   PetscScalar    *x,*from;
803547795f9SHong Zhang 
804547795f9SHong Zhang   PetscFunctionBegin;
805547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
806e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
807547795f9SHong Zhang 
808547795f9SHong Zhang   /* diagonal part */
809547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
810547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
811547795f9SHong Zhang 
812547795f9SHong Zhang   /* subdiagonal part */
813547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
814547795f9SHong Zhang 
815547795f9SHong Zhang   /* copy x into the vec slvec0 */
816547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
817547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
818547795f9SHong Zhang 
819547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
820547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
821547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
822547795f9SHong Zhang 
823547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
824547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
825547795f9SHong Zhang   /* supperdiagonal part */
826547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
827547795f9SHong Zhang   PetscFunctionReturn(0);
828547795f9SHong Zhang }
829547795f9SHong Zhang 
830547795f9SHong Zhang #undef __FUNCT__
831a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
832dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
833a9d4b620SHong Zhang {
834a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
835dfbe8321SBarry Smith   PetscErrorCode ierr;
836d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
837fa22f6d0SBarry Smith   PetscScalar    *x,*from;
838a9d4b620SHong Zhang 
839a9d4b620SHong Zhang   PetscFunctionBegin;
840a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
841e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
842a9d4b620SHong Zhang 
843a9d4b620SHong Zhang   /* diagonal part */
844a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
845fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
846a9d4b620SHong Zhang 
847a9d4b620SHong Zhang   /* subdiagonal part */
848a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
849fc165ae2SBarry Smith 
850a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8511ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8521ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
853a9d4b620SHong Zhang 
854fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
855fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8561ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
857fc165ae2SBarry Smith 
858fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
859ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
860a9d4b620SHong Zhang   /* supperdiagonal part */
861a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
862a9d4b620SHong Zhang   PetscFunctionReturn(0);
863a9d4b620SHong Zhang }
864a9d4b620SHong Zhang 
865a9d4b620SHong Zhang #undef __FUNCT__
86640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
867dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
868a30f8f8cSSatish Balay {
869a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
870dfbe8321SBarry Smith   PetscErrorCode ierr;
8711302d50aSBarry Smith   PetscInt       nt;
872a30f8f8cSSatish Balay 
873a30f8f8cSSatish Balay   PetscFunctionBegin;
874a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
875e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
876e7e72b3dSBarry Smith 
877a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
878e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
87965d70643SHong Zhang 
880ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
881b941877fSHong Zhang   /* do diagonal part */
882b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
883b941877fSHong Zhang   /* do supperdiagonal part */
884ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
885b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
886b941877fSHong Zhang   /* do subdiagonal part */
887b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
888ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
889ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
890a30f8f8cSSatish Balay   PetscFunctionReturn(0);
891a30f8f8cSSatish Balay }
892a30f8f8cSSatish Balay 
8934a2ae208SSatish Balay #undef __FUNCT__
8944a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
895dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
896a30f8f8cSSatish Balay {
897de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
898dfbe8321SBarry Smith   PetscErrorCode ierr;
899d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
900a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
901a9d4b620SHong Zhang 
902a9d4b620SHong Zhang   PetscFunctionBegin;
903a9d4b620SHong Zhang   /*
904ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
9050ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
906a9d4b620SHong Zhang   */
907a9d4b620SHong Zhang   /* diagonal part */
908a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9092dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
910a9d4b620SHong Zhang 
911a9d4b620SHong Zhang   /* subdiagonal part */
912a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
913a9d4b620SHong Zhang 
914a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9151ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9161ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
917a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9181ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
919a9d4b620SHong Zhang 
920ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9211ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
922ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
923a9d4b620SHong Zhang 
924a9d4b620SHong Zhang   /* supperdiagonal part */
925a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
926a9d4b620SHong Zhang   PetscFunctionReturn(0);
927a9d4b620SHong Zhang }
928a9d4b620SHong Zhang 
929a9d4b620SHong Zhang #undef __FUNCT__
930a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
931dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
932a9d4b620SHong Zhang {
933a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
934dfbe8321SBarry Smith   PetscErrorCode ierr;
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay   PetscFunctionBegin;
937ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
938b941877fSHong Zhang   /* do diagonal part */
939b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
940b941877fSHong Zhang   /* do supperdiagonal part */
941ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
942de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
943de8b6608SHong Zhang 
944b941877fSHong Zhang   /* do subdiagonal part */
945a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
946ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
947ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
948a30f8f8cSSatish Balay   PetscFunctionReturn(0);
949a30f8f8cSSatish Balay }
950a30f8f8cSSatish Balay 
951a30f8f8cSSatish Balay /*
952a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
953a30f8f8cSSatish Balay    diagonal block
954a30f8f8cSSatish Balay */
9554a2ae208SSatish Balay #undef __FUNCT__
9564a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
957dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
958a30f8f8cSSatish Balay {
959a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
960dfbe8321SBarry Smith   PetscErrorCode ierr;
961a30f8f8cSSatish Balay 
962a30f8f8cSSatish Balay   PetscFunctionBegin;
963e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
964a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
965a30f8f8cSSatish Balay   PetscFunctionReturn(0);
966a30f8f8cSSatish Balay }
967a30f8f8cSSatish Balay 
9684a2ae208SSatish Balay #undef __FUNCT__
9694a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
970f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
971a30f8f8cSSatish Balay {
972a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
973dfbe8321SBarry Smith   PetscErrorCode ierr;
974a30f8f8cSSatish Balay 
975a30f8f8cSSatish Balay   PetscFunctionBegin;
976f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
977f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
978a30f8f8cSSatish Balay   PetscFunctionReturn(0);
979a30f8f8cSSatish Balay }
980a30f8f8cSSatish Balay 
9814a2ae208SSatish Balay #undef __FUNCT__
9824a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9831302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
984a30f8f8cSSatish Balay {
985d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
986d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
987d0d4cfc2SHong Zhang   PetscErrorCode ierr;
988d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
989d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
990899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
991d0d4cfc2SHong Zhang 
992a30f8f8cSSatish Balay   PetscFunctionBegin;
993e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
994d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
995d0d4cfc2SHong Zhang 
996d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
997d0d4cfc2SHong Zhang     /*
998d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
999d0d4cfc2SHong Zhang     */
1000d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1001d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1002d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1003d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1004d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
100526fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1006d0d4cfc2SHong Zhang     }
1007dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1008d0d4cfc2SHong Zhang   }
1009d0d4cfc2SHong Zhang 
1010e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1011d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1012d0d4cfc2SHong Zhang 
1013d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1014d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1015d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1016d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1017d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1018d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1019d0d4cfc2SHong Zhang 
1020d0d4cfc2SHong Zhang   cmap = mat->garray;
1021d0d4cfc2SHong Zhang   if (v  || idx) {
1022d0d4cfc2SHong Zhang     if (nztot) {
1023d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1024d0d4cfc2SHong Zhang       PetscInt imark = -1;
1025d0d4cfc2SHong Zhang       if (v) {
1026d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1027d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1028d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1029d0d4cfc2SHong Zhang           else break;
1030d0d4cfc2SHong Zhang         }
1031d0d4cfc2SHong Zhang         imark = i;
1032d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1033d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1034d0d4cfc2SHong Zhang       }
1035d0d4cfc2SHong Zhang       if (idx) {
1036d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1037d0d4cfc2SHong Zhang         if (imark > -1) {
1038d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1039d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1040d0d4cfc2SHong Zhang           }
1041d0d4cfc2SHong Zhang         } else {
1042d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
104326fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1044d0d4cfc2SHong Zhang             else break;
1045d0d4cfc2SHong Zhang           }
1046d0d4cfc2SHong Zhang           imark = i;
1047d0d4cfc2SHong Zhang         }
1048d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1049d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1050d0d4cfc2SHong Zhang       }
1051d0d4cfc2SHong Zhang     } else {
1052d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1053d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1054d0d4cfc2SHong Zhang     }
1055d0d4cfc2SHong Zhang   }
1056d0d4cfc2SHong Zhang   *nz  = nztot;
1057d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1058d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1059a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1060a30f8f8cSSatish Balay }
1061a30f8f8cSSatish Balay 
10624a2ae208SSatish Balay #undef __FUNCT__
10634a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10641302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1065a30f8f8cSSatish Balay {
1066a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1067a30f8f8cSSatish Balay 
1068a30f8f8cSSatish Balay   PetscFunctionBegin;
1069e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1070a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1071a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1072a30f8f8cSSatish Balay }
1073a30f8f8cSSatish Balay 
10744a2ae208SSatish Balay #undef __FUNCT__
1075d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1076d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1077d0d4cfc2SHong Zhang {
1078d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1079d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1080d0d4cfc2SHong Zhang 
1081d0d4cfc2SHong Zhang   PetscFunctionBegin;
1082d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1083d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1084d0d4cfc2SHong Zhang }
1085d0d4cfc2SHong Zhang #undef __FUNCT__
1086d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1087d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1088d0d4cfc2SHong Zhang {
1089d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1090d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1091d0d4cfc2SHong Zhang 
1092d0d4cfc2SHong Zhang   PetscFunctionBegin;
1093d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1094d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1095d0d4cfc2SHong Zhang }
1096d0d4cfc2SHong Zhang 
1097d0d4cfc2SHong Zhang #undef __FUNCT__
109899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
109999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110099cafbc1SBarry Smith {
110199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110299cafbc1SBarry Smith   PetscErrorCode ierr;
110399cafbc1SBarry Smith 
110499cafbc1SBarry Smith   PetscFunctionBegin;
110599cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
110699cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
110799cafbc1SBarry Smith   PetscFunctionReturn(0);
110899cafbc1SBarry Smith }
110999cafbc1SBarry Smith 
111099cafbc1SBarry Smith #undef __FUNCT__
111199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111399cafbc1SBarry Smith {
111499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111599cafbc1SBarry Smith   PetscErrorCode ierr;
111699cafbc1SBarry Smith 
111799cafbc1SBarry Smith   PetscFunctionBegin;
111899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
111999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112099cafbc1SBarry Smith   PetscFunctionReturn(0);
112199cafbc1SBarry Smith }
112299cafbc1SBarry Smith 
112399cafbc1SBarry Smith #undef __FUNCT__
11244a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1125dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1126a30f8f8cSSatish Balay {
1127a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1128dfbe8321SBarry Smith   PetscErrorCode ierr;
1129a30f8f8cSSatish Balay 
1130a30f8f8cSSatish Balay   PetscFunctionBegin;
1131a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1132a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1133a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1134a30f8f8cSSatish Balay }
1135a30f8f8cSSatish Balay 
11364a2ae208SSatish Balay #undef __FUNCT__
11374a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1138dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1139a30f8f8cSSatish Balay {
1140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1141a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1142dfbe8321SBarry Smith   PetscErrorCode ierr;
1143a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1144a30f8f8cSSatish Balay 
1145a30f8f8cSSatish Balay   PetscFunctionBegin;
1146d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
114726fbe8dcSKarl Rupp 
1148a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
114926fbe8dcSKarl Rupp 
1150a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1151a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
115226fbe8dcSKarl Rupp 
1153a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
115426fbe8dcSKarl Rupp 
1155a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1156a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1157a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1158a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1159a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1160a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1161a30f8f8cSSatish Balay     info->memory       = isend[3];
1162a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1163a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1164ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
116526fbe8dcSKarl Rupp 
1166a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1167a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1168a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1169a30f8f8cSSatish Balay     info->memory       = irecv[3];
1170a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1171a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1172ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
117326fbe8dcSKarl Rupp 
1174a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1175a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1176a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1177a30f8f8cSSatish Balay     info->memory       = irecv[3];
1178a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1179f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1180a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1181a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1182a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1183a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1184a30f8f8cSSatish Balay }
1185a30f8f8cSSatish Balay 
11864a2ae208SSatish Balay #undef __FUNCT__
11874a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1188ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1189a30f8f8cSSatish Balay {
1190a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1191d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1192dfbe8321SBarry Smith   PetscErrorCode ierr;
1193a30f8f8cSSatish Balay 
1194a30f8f8cSSatish Balay   PetscFunctionBegin;
1195e98b92d7SKris Buschelman   switch (op) {
1196512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1197e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
119828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1199a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1200e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12014e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12024e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1203e98b92d7SKris Buschelman     break;
1204e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12054e0d8c25SBarry Smith     a->roworiented = flg;
120626fbe8dcSKarl Rupp 
12074e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12084e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1209e98b92d7SKris Buschelman     break;
12104e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1211290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1212e98b92d7SKris Buschelman     break;
1213e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12144e0d8c25SBarry Smith     a->donotstash = flg;
1215e98b92d7SKris Buschelman     break;
1216e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12174e0d8c25SBarry Smith     a->ht_flag = flg;
1218e98b92d7SKris Buschelman     break;
12199a4540c5SBarry Smith   case MAT_HERMITIAN:
1220e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1221eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
122226fbe8dcSKarl Rupp 
1223547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1224eeffb40dSHong Zhang     break;
1225ffa07934SHong Zhang   case MAT_SPD:
1226ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1227ffa07934SHong Zhang     A->spd     = flg;
1228ffa07934SHong Zhang     if (flg) {
1229ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1230ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1231ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1232ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1233ffa07934SHong Zhang     }
1234ffa07934SHong Zhang     break;
123577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1236eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1237eeffb40dSHong Zhang     break;
123877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1239eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1240eeffb40dSHong Zhang     break;
12419a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1242e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1243290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124477e54ba9SKris Buschelman     break;
1245d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12464e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1247d0d4cfc2SHong Zhang     break;
1248d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12494e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1250d0d4cfc2SHong Zhang     break;
1251d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12524e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1253d0d4cfc2SHong Zhang     break;
1254e98b92d7SKris Buschelman   default:
1255e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1256a30f8f8cSSatish Balay   }
1257a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1263a30f8f8cSSatish Balay {
1264dfbe8321SBarry Smith   PetscErrorCode ierr;
12656e111a19SKarl Rupp 
1266a30f8f8cSSatish Balay   PetscFunctionBegin;
1267815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1268999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1269fc4dec0aSBarry Smith   }
12708115998fSBarry Smith   PetscFunctionReturn(0);
1271a30f8f8cSSatish Balay }
1272a30f8f8cSSatish Balay 
12734a2ae208SSatish Balay #undef __FUNCT__
12744a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1275dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1276a30f8f8cSSatish Balay {
1277a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1278a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1279dfbe8321SBarry Smith   PetscErrorCode ierr;
12805e90f9d9SHong Zhang   PetscInt       nv,m,n;
1281ace3abfcSBarry Smith   PetscBool      flg;
1282a30f8f8cSSatish Balay 
1283a30f8f8cSSatish Balay   PetscFunctionBegin;
1284a30f8f8cSSatish Balay   if (ll != rr) {
1285b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1286e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1287a30f8f8cSSatish Balay   }
1288b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1289b3bf805bSHong Zhang 
12905e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1291e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1292b3bf805bSHong Zhang 
12935e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1294e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12955e90f9d9SHong Zhang 
1296ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12975e90f9d9SHong Zhang 
12985e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
12990298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
13005e90f9d9SHong Zhang 
13015e90f9d9SHong Zhang   /* scale the diagonal part */
1302a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay 
13045e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1305ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13060298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1307a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1308a30f8f8cSSatish Balay }
1309a30f8f8cSSatish Balay 
13104a2ae208SSatish Balay #undef __FUNCT__
13114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1312dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1313a30f8f8cSSatish Balay {
1314f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1315dfbe8321SBarry Smith   PetscErrorCode ierr;
1316a30f8f8cSSatish Balay 
1317a30f8f8cSSatish Balay   PetscFunctionBegin;
1318a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1320a30f8f8cSSatish Balay }
1321a30f8f8cSSatish Balay 
13226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1323a30f8f8cSSatish Balay 
13244a2ae208SSatish Balay #undef __FUNCT__
13254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1326ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1327a30f8f8cSSatish Balay {
1328a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1329a30f8f8cSSatish Balay   Mat            a,b,c,d;
1330ace3abfcSBarry Smith   PetscBool      flg;
1331dfbe8321SBarry Smith   PetscErrorCode ierr;
1332a30f8f8cSSatish Balay 
1333a30f8f8cSSatish Balay   PetscFunctionBegin;
1334a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1335a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1336a30f8f8cSSatish Balay 
1337a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1338abc0a331SBarry Smith   if (flg) {
1339a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   }
1341ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1342a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1343a30f8f8cSSatish Balay }
1344a30f8f8cSSatish Balay 
13454a2ae208SSatish Balay #undef __FUNCT__
13463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13473c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13483c896bc6SHong Zhang {
13493c896bc6SHong Zhang   PetscErrorCode ierr;
13503c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
13513c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
13523c896bc6SHong Zhang 
13533c896bc6SHong Zhang   PetscFunctionBegin;
13543c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13553c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1356d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13573c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1358d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13593c896bc6SHong Zhang   } else {
13603c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13613c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13623c896bc6SHong Zhang   }
13633c896bc6SHong Zhang   PetscFunctionReturn(0);
13643c896bc6SHong Zhang }
13653c896bc6SHong Zhang 
13663c896bc6SHong Zhang #undef __FUNCT__
13674994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13684994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1369273d9f13SBarry Smith {
1370dfbe8321SBarry Smith   PetscErrorCode ierr;
1371273d9f13SBarry Smith 
1372273d9f13SBarry Smith   PetscFunctionBegin;
1373535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1374273d9f13SBarry Smith   PetscFunctionReturn(0);
1375273d9f13SBarry Smith }
1376a5e6ed63SBarry Smith 
13774fe895cdSHong Zhang #undef __FUNCT__
13784fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13804fe895cdSHong Zhang {
13814fe895cdSHong Zhang   PetscErrorCode ierr;
13824fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
13834fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13844fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13854fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13864fe895cdSHong Zhang 
13874fe895cdSHong Zhang   PetscFunctionBegin;
13884fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13894fe895cdSHong Zhang     PetscScalar alpha = a;
13904fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
13914fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1392c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
13938b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
13944fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
13954fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1396c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
13978b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1398a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
13994fe895cdSHong Zhang   } else {
14004de5dceeSHong Zhang     Mat      B;
14014de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
14024de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1403d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14044de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
14054de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
14064de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
14074de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
14084de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
14094de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
14104de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
14114de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
14124de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
14134de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
14144de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
14154de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
14164de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
14174de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
14184de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1419d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14204de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
14214fe895cdSHong Zhang   }
14224fe895cdSHong Zhang   PetscFunctionReturn(0);
14234fe895cdSHong Zhang }
14244fe895cdSHong Zhang 
1425a5e6ed63SBarry Smith #undef __FUNCT__
1426a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14271302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1428a5e6ed63SBarry Smith {
14296849ba73SBarry Smith   PetscErrorCode ierr;
14301302d50aSBarry Smith   PetscInt       i;
1431ace3abfcSBarry Smith   PetscBool      flg;
1432a5e6ed63SBarry Smith 
14336849ba73SBarry Smith   PetscFunctionBegin;
14344dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1435a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1436a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
14374dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
14384dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1439a5e6ed63SBarry Smith     }
14404dcd73b1SHong Zhang   }
1441a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1442a5e6ed63SBarry Smith }
1443a5e6ed63SBarry Smith 
1444a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
14453964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1446a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1447a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1448a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
144997304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1450431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1451431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1452a30f8f8cSSatish Balay                                        0,
1453a30f8f8cSSatish Balay                                        0,
1454a30f8f8cSSatish Balay                                        0,
145597304618SKris Buschelman                                /* 10*/ 0,
1456a30f8f8cSSatish Balay                                        0,
1457a30f8f8cSSatish Balay                                        0,
145841f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1459a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
146097304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1461a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1462a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1463a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1464a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
146597304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1466a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1467a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1468a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1469d519adbfSMatthew Knepley                                /* 24*/ 0,
1470a30f8f8cSSatish Balay                                        0,
1471a30f8f8cSSatish Balay                                        0,
1472a30f8f8cSSatish Balay                                        0,
1473a30f8f8cSSatish Balay                                        0,
14744994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1475b5df2d14SHong Zhang                                        0,
1476a30f8f8cSSatish Balay                                        0,
1477a30f8f8cSSatish Balay                                        0,
1478a30f8f8cSSatish Balay                                        0,
1479d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1480a30f8f8cSSatish Balay                                        0,
1481a30f8f8cSSatish Balay                                        0,
1482a30f8f8cSSatish Balay                                        0,
1483a30f8f8cSSatish Balay                                        0,
1484d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1485a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1486d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1487a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
14883c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1489d519adbfSMatthew Knepley                                /* 44*/ 0,
1490a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1491a30f8f8cSSatish Balay                                        0,
1492a30f8f8cSSatish Balay                                        0,
1493a30f8f8cSSatish Balay                                        0,
1494f73d5cc4SBarry Smith                                /* 49*/ 0,
1495a30f8f8cSSatish Balay                                        0,
1496a30f8f8cSSatish Balay                                        0,
1497a30f8f8cSSatish Balay                                        0,
1498a30f8f8cSSatish Balay                                        0,
1499d519adbfSMatthew Knepley                                /* 54*/ 0,
1500a30f8f8cSSatish Balay                                        0,
1501a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1502a30f8f8cSSatish Balay                                        0,
1503a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
1504d519adbfSMatthew Knepley                                /* 59*/ 0,
1505a30f8f8cSSatish Balay                                        0,
1506a30f8f8cSSatish Balay                                        0,
1507357abbc8SBarry Smith                                        0,
150824d5174aSHong Zhang                                        0,
1509d519adbfSMatthew Knepley                                /* 64*/ 0,
151024d5174aSHong Zhang                                        0,
151124d5174aSHong Zhang                                        0,
151224d5174aSHong Zhang                                        0,
151324d5174aSHong Zhang                                        0,
1514d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
151524d5174aSHong Zhang                                        0,
151697304618SKris Buschelman                                        0,
151797304618SKris Buschelman                                        0,
151897304618SKris Buschelman                                        0,
1519d519adbfSMatthew Knepley                                /* 74*/ 0,
152097304618SKris Buschelman                                        0,
152197304618SKris Buschelman                                        0,
152297304618SKris Buschelman                                        0,
152397304618SKris Buschelman                                        0,
1524d519adbfSMatthew Knepley                                /* 79*/ 0,
152597304618SKris Buschelman                                        0,
152697304618SKris Buschelman                                        0,
152797304618SKris Buschelman                                        0,
15285bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1529d519adbfSMatthew Knepley                                /* 84*/ 0,
1530865e5f61SKris Buschelman                                        0,
1531865e5f61SKris Buschelman                                        0,
1532865e5f61SKris Buschelman                                        0,
1533865e5f61SKris Buschelman                                        0,
1534d519adbfSMatthew Knepley                                /* 89*/ 0,
1535865e5f61SKris Buschelman                                        0,
1536865e5f61SKris Buschelman                                        0,
1537865e5f61SKris Buschelman                                        0,
1538865e5f61SKris Buschelman                                        0,
1539d519adbfSMatthew Knepley                                /* 94*/ 0,
1540865e5f61SKris Buschelman                                        0,
1541865e5f61SKris Buschelman                                        0,
154299cafbc1SBarry Smith                                        0,
154399cafbc1SBarry Smith                                        0,
1544d519adbfSMatthew Knepley                                /* 99*/ 0,
154599cafbc1SBarry Smith                                        0,
154699cafbc1SBarry Smith                                        0,
154799cafbc1SBarry Smith                                        0,
154899cafbc1SBarry Smith                                        0,
1549d519adbfSMatthew Knepley                                /*104*/ 0,
155099cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1551d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1552d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
155395936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
155495936485SShri Abhyankar                                /*109*/ 0,
1555*aae456dbSHong Zhang                                        0,
155695936485SShri Abhyankar                                        0,
155795936485SShri Abhyankar                                        0,
155895936485SShri Abhyankar                                        0,
155995936485SShri Abhyankar                                /*114*/ 0,
156095936485SShri Abhyankar                                        0,
156195936485SShri Abhyankar                                        0,
156295936485SShri Abhyankar                                        0,
156395936485SShri Abhyankar                                        0,
156495936485SShri Abhyankar                                /*119*/ 0,
156595936485SShri Abhyankar                                        0,
156695936485SShri Abhyankar                                        0,
15673964eb88SJed Brown                                        0,
15683964eb88SJed Brown                                        0,
15693964eb88SJed Brown                                /*124*/ 0,
15703964eb88SJed Brown                                        0,
15713964eb88SJed Brown                                        0,
15723964eb88SJed Brown                                        0,
15733964eb88SJed Brown                                        0,
15743964eb88SJed Brown                                /*129*/ 0,
15753964eb88SJed Brown                                        0,
15763964eb88SJed Brown                                        0,
15773964eb88SJed Brown                                        0,
15783964eb88SJed Brown                                        0,
15793964eb88SJed Brown                                /*134*/ 0,
15803964eb88SJed Brown                                        0,
15813964eb88SJed Brown                                        0,
15823964eb88SJed Brown                                        0,
15833964eb88SJed Brown                                        0,
15843964eb88SJed Brown                                /*139*/ 0,
1585f9426fe0SMark Adams                                        0,
158659f5e6ceSHong Zhang                                        0,
158759f5e6ceSHong Zhang                                        0,
158859f5e6ceSHong Zhang                                        0,
158959f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
159099cafbc1SBarry Smith };
1591a30f8f8cSSatish Balay 
15924a2ae208SSatish Balay #undef __FUNCT__
15934a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
159411bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1595a30f8f8cSSatish Balay {
1596a30f8f8cSSatish Balay   PetscFunctionBegin;
1597a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1599a30f8f8cSSatish Balay }
1600a30f8f8cSSatish Balay 
16014a2ae208SSatish Balay #undef __FUNCT__
1602a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1603b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1604a23d5eceSKris Buschelman {
1605a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1606dfbe8321SBarry Smith   PetscErrorCode ierr;
1607535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1608a23d5eceSKris Buschelman 
1609a23d5eceSKris Buschelman   PetscFunctionBegin;
161033d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
161126283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
161226283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1613e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1614899cda47SBarry Smith 
1615a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1616d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1617d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1618c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1619a23d5eceSKris Buschelman 
1620d0f46423SBarry Smith   B->rmap->bs = bs;
1621a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1622a23d5eceSKris Buschelman   b->mbs      = mbs;
1623a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1624de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1625de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1626a23d5eceSKris Buschelman 
1627a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1628d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1629a23d5eceSKris Buschelman   }
1630d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1631d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1632a23d5eceSKris Buschelman 
1633d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1634d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1635a23d5eceSKris Buschelman 
1636526dfc15SBarry Smith   if (!B->preallocated) {
1637f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1638d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16399c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
16403bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1641f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1642d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16434aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
16443bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1645ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1646526dfc15SBarry Smith   }
1647a23d5eceSKris Buschelman 
1648526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1649526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
165026fbe8dcSKarl Rupp 
1651526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1652a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1653a23d5eceSKris Buschelman }
1654a23d5eceSKris Buschelman 
1655dfb205c3SBarry Smith #undef __FUNCT__
1656dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1657dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1658dfb205c3SBarry Smith {
1659dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1660dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1661dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1662dfb205c3SBarry Smith   PetscScalar    *values=0;
1663dfb205c3SBarry Smith   PetscErrorCode ierr;
1664dfb205c3SBarry Smith 
1665dfb205c3SBarry Smith   PetscFunctionBegin;
1666ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1667dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1668dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1669dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1670dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1671e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1672dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1673dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1674dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1675dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1676dfb205c3SBarry Smith 
1677dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1678dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1679dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1680dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1681dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1682dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1683dfb205c3SBarry Smith     JJ     = jj + ii[i];
1684dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1685dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1686dfb205c3SBarry Smith       JJ++;
1687dfb205c3SBarry Smith     }
1688dfb205c3SBarry Smith     d = 0;
1689dfb205c3SBarry Smith     for (; j<nz; j++) {
1690dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1691dfb205c3SBarry Smith       d++;
1692dfb205c3SBarry Smith     }
1693dfb205c3SBarry Smith     d_nnz[i] = d;
1694dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1695dfb205c3SBarry Smith   }
1696dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1697dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1698dfb205c3SBarry Smith 
1699dfb205c3SBarry Smith   values = (PetscScalar*)V;
1700dfb205c3SBarry Smith   if (!values) {
1701785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1702dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1703dfb205c3SBarry Smith   }
1704dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1705dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1706dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1707dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1708dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1709dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1710dfb205c3SBarry Smith   }
1711dfb205c3SBarry Smith 
1712dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1713dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1714dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17157827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1716dfb205c3SBarry Smith   PetscFunctionReturn(0);
1717dfb205c3SBarry Smith }
1718dfb205c3SBarry Smith 
1719611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
17208cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1721611f576cSBarry Smith #endif
1722b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
17238cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1724b5e56a35SBarry Smith #endif
17255c9eb25fSBarry Smith 
17260bad9183SKris Buschelman /*MC
1727fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1728828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1729828413b8SBarry Smith    the matrix is stored.
1730828413b8SBarry Smith 
1731828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1732828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17330bad9183SKris Buschelman 
17340bad9183SKris Buschelman    Options Database Keys:
17350bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17360bad9183SKris Buschelman 
17370bad9183SKris Buschelman   Level: beginner
17380bad9183SKris Buschelman 
17390bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17400bad9183SKris Buschelman M*/
17410bad9183SKris Buschelman 
17428cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1743aa5a9175SDahai Guo 
1744a23d5eceSKris Buschelman #undef __FUNCT__
17454a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17468cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1747b5df2d14SHong Zhang {
1748b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1749dfbe8321SBarry Smith   PetscErrorCode ierr;
1750ace3abfcSBarry Smith   PetscBool      flg;
1751b5df2d14SHong Zhang 
1752b5df2d14SHong Zhang   PetscFunctionBegin;
1753b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1754b0a32e0cSBarry Smith   B->data = (void*)b;
1755b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1756b5df2d14SHong Zhang 
1757b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1758b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1759b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1760b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
176126fbe8dcSKarl Rupp 
1762ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1763ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1764b5df2d14SHong Zhang 
1765b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1766785e854fSJed Brown   ierr = PetscMalloc1((b->size+2),&b->rangebs);CHKERRQ(ierr);
1767b5df2d14SHong Zhang 
1768b5df2d14SHong Zhang   /* build cache for off array entries formed */
1769ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
177026fbe8dcSKarl Rupp 
1771b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
17720298fd71SBarry Smith   b->colmap      = NULL;
17730298fd71SBarry Smith   b->garray      = NULL;
1774b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1775b5df2d14SHong Zhang 
1776b5df2d14SHong Zhang   /* stuff used in block assembly */
1777b5df2d14SHong Zhang   b->barray = 0;
1778b5df2d14SHong Zhang 
1779b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1780b5df2d14SHong Zhang   b->lvec    = 0;
1781b5df2d14SHong Zhang   b->Mvctx   = 0;
178240781036SHong Zhang   b->slvec0  = 0;
178340781036SHong Zhang   b->slvec0b = 0;
178440781036SHong Zhang   b->slvec1  = 0;
178540781036SHong Zhang   b->slvec1a = 0;
178640781036SHong Zhang   b->slvec1b = 0;
178740781036SHong Zhang   b->sMvctx  = 0;
1788b5df2d14SHong Zhang 
1789b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1790b5df2d14SHong Zhang   b->rowindices   = 0;
1791b5df2d14SHong Zhang   b->rowvalues    = 0;
1792b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1793b5df2d14SHong Zhang 
1794b5df2d14SHong Zhang   /* hash table stuff */
1795b5df2d14SHong Zhang   b->ht           = 0;
1796b5df2d14SHong Zhang   b->hd           = 0;
1797b5df2d14SHong Zhang   b->ht_size      = 0;
1798b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1799b5df2d14SHong Zhang   b->ht_fact      = 0;
1800b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1801b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1802b5df2d14SHong Zhang 
18037a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18047a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
18057a868f3eSHong Zhang 
180659ffdab8SBarry Smith   b->in_loc = 0;
180759ffdab8SBarry Smith   b->v_loc  = 0;
180859ffdab8SBarry Smith   b->n_loc  = 0;
1809ce94432eSBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
18100298fd71SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr);
1811b5df2d14SHong Zhang   if (flg) {
1812f6275e2eSBarry Smith     PetscReal fact = 1.39;
18134e0d8c25SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
18140298fd71SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
1815b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1816b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18171e2582c4SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1818b5df2d14SHong Zhang   }
18198c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18208c07d4e3SBarry Smith 
1821b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1822bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1823b5e56a35SBarry Smith #endif
1824611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1825bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1826611f576cSBarry Smith #endif
1827bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1828bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1829bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1830bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1831bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1832bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1833aa5a9175SDahai Guo 
183423ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
183523ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
183623ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
183723ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
183826fbe8dcSKarl Rupp 
183917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1840b5df2d14SHong Zhang   PetscFunctionReturn(0);
1841b5df2d14SHong Zhang }
1842b5df2d14SHong Zhang 
1843209238afSKris Buschelman /*MC
1844002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1845209238afSKris Buschelman 
1846209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1847209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1848209238afSKris Buschelman 
1849209238afSKris Buschelman    Options Database Keys:
1850209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1851209238afSKris Buschelman 
1852209238afSKris Buschelman   Level: beginner
1853209238afSKris Buschelman 
1854209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1855209238afSKris Buschelman M*/
1856209238afSKris Buschelman 
18574a2ae208SSatish Balay #undef __FUNCT__
18584a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1859b5df2d14SHong Zhang /*@C
1860b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1861b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1862b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1863b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1864b5df2d14SHong Zhang 
1865b5df2d14SHong Zhang    Collective on Mat
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang    Input Parameters:
18681c4f3114SJed Brown +  B - the matrix
1869bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1870bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1871b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1872b5df2d14SHong Zhang            submatrix  (same for all local rows)
1873b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18746d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18750298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
187695742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1877b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1878b5df2d14SHong Zhang            submatrix (same for all local rows).
1879b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1880c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
18810298fd71SBarry Smith            (possibly different for each block row) or NULL.
1882b5df2d14SHong Zhang 
1883b5df2d14SHong Zhang 
1884b5df2d14SHong Zhang    Options Database Keys:
1885b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1886b5df2d14SHong Zhang                      block calculations (much slower)
1887b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1888b5df2d14SHong Zhang 
1889b5df2d14SHong Zhang    Notes:
1890b5df2d14SHong Zhang 
1891b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1892b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1893b5df2d14SHong Zhang 
189449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
189549a6f317SBarry Smith 
1896b5df2d14SHong Zhang    Storage Information:
1897b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1898b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1899b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1900b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1901b5df2d14SHong Zhang 
1902b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1903b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
19040298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1905b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1906b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1907b5df2d14SHong Zhang 
1908aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1909aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1910aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1911aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1912aa95bbe8SBarry Smith 
1913b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1914b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1915b5df2d14SHong Zhang 
1916b5df2d14SHong Zhang .vb
1917b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1918a4b1a0f6SJed Brown           --------------------------
1919c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
1920c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
1921c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
1922a4b1a0f6SJed Brown           --------------------------
1923b5df2d14SHong Zhang .ve
1924b5df2d14SHong Zhang 
1925b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1926b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19276d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19286d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1929b5df2d14SHong Zhang 
19306d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19316d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1932c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1933c2fc9fa9SBarry Smith 
1934b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1935b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1936b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1937b5df2d14SHong Zhang    matrices.
1938b5df2d14SHong Zhang 
1939b5df2d14SHong Zhang    Level: intermediate
1940b5df2d14SHong Zhang 
1941b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1942b5df2d14SHong Zhang 
1943ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
1944b5df2d14SHong Zhang @*/
19457087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1946b5df2d14SHong Zhang {
19474ac538c5SBarry Smith   PetscErrorCode ierr;
1948b5df2d14SHong Zhang 
1949b5df2d14SHong Zhang   PetscFunctionBegin;
19506ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19516ba663aaSJed Brown   PetscValidType(B,1);
19526ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19534ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1954b5df2d14SHong Zhang   PetscFunctionReturn(0);
1955b5df2d14SHong Zhang }
1956b5df2d14SHong Zhang 
19574a2ae208SSatish Balay #undef __FUNCT__
195869b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1959a30f8f8cSSatish Balay /*@C
196069b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1961a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1962a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1963a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1964a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1965a30f8f8cSSatish Balay 
1966a30f8f8cSSatish Balay    Collective on MPI_Comm
1967a30f8f8cSSatish Balay 
1968a30f8f8cSSatish Balay    Input Parameters:
1969a30f8f8cSSatish Balay +  comm - MPI communicator
1970bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1971bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1972a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1973a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1974a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1975a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1976a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1977a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1978a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1979a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1980a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1981a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1982a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19836d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19840298fd71SBarry Smith            (possibly different for each block block row) or NULL.
198595742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
198695742e49SBarry Smith            set its value even if it is zero.
1987a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1988a30f8f8cSSatish Balay            submatrix (same for all local rows).
1989a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1990a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
19910298fd71SBarry Smith            each block row) or NULL.
1992a30f8f8cSSatish Balay 
1993a30f8f8cSSatish Balay    Output Parameter:
1994a30f8f8cSSatish Balay .  A - the matrix
1995a30f8f8cSSatish Balay 
1996a30f8f8cSSatish Balay    Options Database Keys:
1997a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1998a30f8f8cSSatish Balay                      block calculations (much slower)
1999a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2000a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2001a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2002a30f8f8cSSatish Balay 
2003175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2004ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2005175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2006175b88e8SBarry Smith 
2007a30f8f8cSSatish Balay    Notes:
2008d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20096d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2010d1be2dadSMatthew Knepley 
2011a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2012a30f8f8cSSatish Balay    (possibly both).
2013a30f8f8cSSatish Balay 
2014a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2015a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2016a30f8f8cSSatish Balay 
201749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
201849a6f317SBarry Smith 
2019a30f8f8cSSatish Balay    Storage Information:
2020a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2021a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2022a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2023a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2024a30f8f8cSSatish Balay 
2025a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2026a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
20270298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2028a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2029a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2030a30f8f8cSSatish Balay 
2031a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2032a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2033a30f8f8cSSatish Balay 
2034a30f8f8cSSatish Balay .vb
2035a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2036a4b1a0f6SJed Brown           --------------------------
2037c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2038c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2039c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2040a4b1a0f6SJed Brown           --------------------------
2041a30f8f8cSSatish Balay .ve
2042a30f8f8cSSatish Balay 
2043a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2044a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20456d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20466d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2047a30f8f8cSSatish Balay 
20486d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20496d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2050a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2051a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2052a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2053a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2054a30f8f8cSSatish Balay    matrices.
2055a30f8f8cSSatish Balay 
2056a30f8f8cSSatish Balay    Level: intermediate
2057a30f8f8cSSatish Balay 
2058a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2059a30f8f8cSSatish Balay 
206069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2061a30f8f8cSSatish Balay @*/
2062a30f8f8cSSatish Balay 
206369b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2064a30f8f8cSSatish Balay {
20656849ba73SBarry Smith   PetscErrorCode ierr;
20661302d50aSBarry Smith   PetscMPIInt    size;
2067a30f8f8cSSatish Balay 
2068a30f8f8cSSatish Balay   PetscFunctionBegin;
2069f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2070f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2071273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2072273d9f13SBarry Smith   if (size > 1) {
2073b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2074b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2075273d9f13SBarry Smith   } else {
2076273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2077273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2078273d9f13SBarry Smith   }
2079a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2080a30f8f8cSSatish Balay }
2081a30f8f8cSSatish Balay 
2082a30f8f8cSSatish Balay 
20834a2ae208SSatish Balay #undef __FUNCT__
20844a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20856849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2086a30f8f8cSSatish Balay {
2087a30f8f8cSSatish Balay   Mat            mat;
2088a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2089dfbe8321SBarry Smith   PetscErrorCode ierr;
2090d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2091387bc808SHong Zhang   PetscScalar    *array;
2092a30f8f8cSSatish Balay 
2093a30f8f8cSSatish Balay   PetscFunctionBegin;
2094a30f8f8cSSatish Balay   *newmat = 0;
209526fbe8dcSKarl Rupp 
2096ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2097d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20987adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20991d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21001e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21011e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2102e1b6402fSHong Zhang 
2103d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2104273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
210582327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21067fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21077fff6886SHong Zhang 
2108b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2109a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2110a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2111a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2112a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2113a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2114a30f8f8cSSatish Balay 
2115899cda47SBarry Smith 
2116a30f8f8cSSatish Balay   a->size         = oldmat->size;
2117a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2118a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2119a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2120a30f8f8cSSatish Balay   a->rowindices   = 0;
2121a30f8f8cSSatish Balay   a->rowvalues    = 0;
2122a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2123a30f8f8cSSatish Balay   a->barray       = 0;
2124899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2125899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2126899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2127899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2128a30f8f8cSSatish Balay 
2129a30f8f8cSSatish Balay   /* hash table stuff */
2130a30f8f8cSSatish Balay   a->ht           = 0;
2131a30f8f8cSSatish Balay   a->hd           = 0;
2132a30f8f8cSSatish Balay   a->ht_size      = 0;
2133a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2134a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2135a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2136a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2137a30f8f8cSSatish Balay 
2138899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2139a30f8f8cSSatish Balay   if (oldmat->colmap) {
2140a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2141a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2142a30f8f8cSSatish Balay #else
2143785e854fSJed Brown     ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr);
21443bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21451302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2146a30f8f8cSSatish Balay #endif
2147a30f8f8cSSatish Balay   } else a->colmap = 0;
2148387bc808SHong Zhang 
2149a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2150785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
21513bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21521302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2153a30f8f8cSSatish Balay   } else a->garray = 0;
2154a30f8f8cSSatish Balay 
2155ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2156a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
21573bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2158a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
21593bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
216082327fa8SHong Zhang 
216182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
21623bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
216382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
21643bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2165387bc808SHong Zhang 
2166387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21671ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2168778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2169778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21701ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21711ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2172778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21731ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
21743bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
21753bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
21763bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
21773bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
21783bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2179387bc808SHong Zhang 
2180387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2181387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2182387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
21833bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
218482327fa8SHong Zhang 
2185a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
21863bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2187a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
21883bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2189140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2190a30f8f8cSSatish Balay   *newmat = mat;
2191a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2192a30f8f8cSSatish Balay }
2193a30f8f8cSSatish Balay 
21944a2ae208SSatish Balay #undef __FUNCT__
21955bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2196112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
219795936485SShri Abhyankar {
219895936485SShri Abhyankar   PetscErrorCode ierr;
219995936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
220095936485SShri Abhyankar   PetscScalar    *vals,*buf;
2201ce94432eSBarry Smith   MPI_Comm       comm;
220295936485SShri Abhyankar   MPI_Status     status;
2203adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2204adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
220595936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
220695936485SShri Abhyankar   PetscInt       bs       =1,Mbs,mbs,extra_rows;
220795936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
220895936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
220995936485SShri Abhyankar   int            fd;
221095936485SShri Abhyankar 
221195936485SShri Abhyankar   PetscFunctionBegin;
2212ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
22130298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
22140298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
221595936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
221695936485SShri Abhyankar 
221795936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
221895936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
221995936485SShri Abhyankar   if (!rank) {
222095936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
222195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
222295936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
222395936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
222495936485SShri Abhyankar   }
222595936485SShri Abhyankar 
222695936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
222795936485SShri Abhyankar 
222895936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
222926fbe8dcSKarl Rupp   M    = header[1];
223026fbe8dcSKarl Rupp   N    = header[2];
223195936485SShri Abhyankar 
223295936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
223395936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
223495936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
223595936485SShri Abhyankar 
223695936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
223795936485SShri Abhyankar   if (sizesset) {
223895936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
223995936485SShri Abhyankar   }
2240abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2241abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
224295936485SShri Abhyankar 
224395936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
224495936485SShri Abhyankar 
224595936485SShri Abhyankar   /*
224695936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
224795936485SShri Abhyankar      divisible by the blocksize
224895936485SShri Abhyankar   */
224995936485SShri Abhyankar   Mbs        = M/bs;
225095936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
225195936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
225295936485SShri Abhyankar   else                  Mbs++;
225395936485SShri Abhyankar   if (extra_rows &&!rank) {
225495936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
225595936485SShri Abhyankar   }
225695936485SShri Abhyankar 
225795936485SShri Abhyankar   /* determine ownership of all rows */
225895936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
225995936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
226095936485SShri Abhyankar     m   = mbs*bs;
226195936485SShri Abhyankar   } else { /* User Set */
226295936485SShri Abhyankar     m   = newmat->rmap->n;
226395936485SShri Abhyankar     mbs = m/bs;
226495936485SShri Abhyankar   }
2265dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
22664dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
226795936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
226895936485SShri Abhyankar   rowners[0] = 0;
226995936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
227095936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
227195936485SShri Abhyankar   rstart = rowners[rank];
227295936485SShri Abhyankar   rend   = rowners[rank+1];
227395936485SShri Abhyankar 
227495936485SShri Abhyankar   /* distribute row lengths to all processors */
2275785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
227695936485SShri Abhyankar   if (!rank) {
2277785e854fSJed Brown     ierr = PetscMalloc1((M+extra_rows),&rowlengths);CHKERRQ(ierr);
227895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
227995936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2280785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
228195936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
228295936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
228395936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
228495936485SShri Abhyankar   } else {
228595936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
228695936485SShri Abhyankar   }
228795936485SShri Abhyankar 
228895936485SShri Abhyankar   if (!rank) {   /* procs[0] */
228995936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2290785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
229195936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
229295936485SShri Abhyankar     for (i=0; i<size; i++) {
229395936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
229495936485SShri Abhyankar         procsnz[i] += rowlengths[j];
229595936485SShri Abhyankar       }
229695936485SShri Abhyankar     }
229795936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
229895936485SShri Abhyankar 
229995936485SShri Abhyankar     /* determine max buffer needed and allocate it */
230095936485SShri Abhyankar     maxnz = 0;
230195936485SShri Abhyankar     for (i=0; i<size; i++) {
230295936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
230395936485SShri Abhyankar     }
2304785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
230595936485SShri Abhyankar 
230695936485SShri Abhyankar     /* read in my part of the matrix column indices  */
230795936485SShri Abhyankar     nz     = procsnz[0];
2308785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
230995936485SShri Abhyankar     mycols = ibuf;
231095936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
231195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
231226fbe8dcSKarl Rupp     if (size == 1) {
231326fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
231426fbe8dcSKarl Rupp     }
231595936485SShri Abhyankar 
231695936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
231795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
231895936485SShri Abhyankar       nz   = procsnz[i];
231995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
232095936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
232195936485SShri Abhyankar     }
232295936485SShri Abhyankar     /* read in the stuff for the last proc */
232395936485SShri Abhyankar     if (size != 1) {
232495936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
232595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
232695936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
232795936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
232895936485SShri Abhyankar     }
232995936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
233095936485SShri Abhyankar   } else {  /* procs[i], i>0 */
233195936485SShri Abhyankar     /* determine buffer space needed for message */
233295936485SShri Abhyankar     nz = 0;
233326fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2334785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
233595936485SShri Abhyankar     mycols = ibuf;
233695936485SShri Abhyankar     /* receive message of column indices*/
233795936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
233895936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
233995936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
234095936485SShri Abhyankar   }
234195936485SShri Abhyankar 
234295936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2343dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2344dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
234595936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234695936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234795936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234895936485SShri Abhyankar   rowcount = 0;
234995936485SShri Abhyankar   nzcount  = 0;
235095936485SShri Abhyankar   for (i=0; i<mbs; i++) {
235195936485SShri Abhyankar     dcount  = 0;
235295936485SShri Abhyankar     odcount = 0;
235395936485SShri Abhyankar     for (j=0; j<bs; j++) {
235495936485SShri Abhyankar       kmax = locrowlens[rowcount];
235595936485SShri Abhyankar       for (k=0; k<kmax; k++) {
235695936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
235795936485SShri Abhyankar         if (!mask[tmp]) {
235895936485SShri Abhyankar           mask[tmp] = 1;
235995936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
236095936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
236195936485SShri Abhyankar         }
236295936485SShri Abhyankar       }
236395936485SShri Abhyankar       rowcount++;
236495936485SShri Abhyankar     }
236595936485SShri Abhyankar 
236695936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
236795936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
236895936485SShri Abhyankar 
236995936485SShri Abhyankar     /* zero out the mask elements we set */
237095936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
237195936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
237295936485SShri Abhyankar   }
237395936485SShri Abhyankar   if (!sizesset) {
237495936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
237595936485SShri Abhyankar   }
237695936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
23776816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
237895936485SShri Abhyankar 
237995936485SShri Abhyankar   if (!rank) {
2380785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
238195936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
238295936485SShri Abhyankar     nz     = procsnz[0];
238395936485SShri Abhyankar     vals   = buf;
238495936485SShri Abhyankar     mycols = ibuf;
238595936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
238695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
238726fbe8dcSKarl Rupp     if (size == 1) {
238826fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
238926fbe8dcSKarl Rupp     }
239095936485SShri Abhyankar 
239195936485SShri Abhyankar     /* insert into matrix */
239295936485SShri Abhyankar     jj = rstart*bs;
239395936485SShri Abhyankar     for (i=0; i<m; i++) {
239495936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
239595936485SShri Abhyankar       mycols += locrowlens[i];
239695936485SShri Abhyankar       vals   += locrowlens[i];
239795936485SShri Abhyankar       jj++;
239895936485SShri Abhyankar     }
239995936485SShri Abhyankar 
240095936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
240195936485SShri Abhyankar     for (i=1; i<size-1; i++) {
240295936485SShri Abhyankar       nz   = procsnz[i];
240395936485SShri Abhyankar       vals = buf;
240495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
240595936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
240695936485SShri Abhyankar     }
240795936485SShri Abhyankar     /* the last proc */
240895936485SShri Abhyankar     if (size != 1) {
240995936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
241095936485SShri Abhyankar       vals = buf;
241195936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
241295936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
241395936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
241495936485SShri Abhyankar     }
241595936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
241695936485SShri Abhyankar 
241795936485SShri Abhyankar   } else {
241895936485SShri Abhyankar     /* receive numeric values */
2419785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
242095936485SShri Abhyankar 
242195936485SShri Abhyankar     /* receive message of values*/
242295936485SShri Abhyankar     vals   = buf;
242395936485SShri Abhyankar     mycols = ibuf;
242495936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
242595936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
242695936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
242795936485SShri Abhyankar 
242895936485SShri Abhyankar     /* insert into matrix */
242995936485SShri Abhyankar     jj = rstart*bs;
243095936485SShri Abhyankar     for (i=0; i<m; i++) {
243195936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
243295936485SShri Abhyankar       mycols += locrowlens[i];
243395936485SShri Abhyankar       vals   += locrowlens[i];
243495936485SShri Abhyankar       jj++;
243595936485SShri Abhyankar     }
243695936485SShri Abhyankar   }
243795936485SShri Abhyankar 
243895936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
243995936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
244095936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
244195936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
244295936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
244395936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
244495936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244595936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244695936485SShri Abhyankar   PetscFunctionReturn(0);
244795936485SShri Abhyankar }
244895936485SShri Abhyankar 
244995936485SShri Abhyankar #undef __FUNCT__
24504a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2451dcf5cc72SBarry Smith /*XXXXX@
2452a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2453a30f8f8cSSatish Balay 
2454a30f8f8cSSatish Balay    Input Parameters:
2455a30f8f8cSSatish Balay .  mat  - the matrix
2456a30f8f8cSSatish Balay .  fact - factor
2457a30f8f8cSSatish Balay 
2458c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2459a30f8f8cSSatish Balay 
2460a30f8f8cSSatish Balay    Level: advanced
2461a30f8f8cSSatish Balay 
2462a30f8f8cSSatish Balay   Notes:
2463a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2464a30f8f8cSSatish Balay 
2465a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2466a30f8f8cSSatish Balay 
2467a30f8f8cSSatish Balay .seealso: MatSetOption()
2468dcf5cc72SBarry Smith @XXXXX*/
2469dcf5cc72SBarry Smith 
247024d5174aSHong Zhang 
24714a2ae208SSatish Balay #undef __FUNCT__
2472985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2473985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
247424d5174aSHong Zhang {
247524d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2476f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2477ca54ac64SHong Zhang   PetscReal      atmp;
247887828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2479dfbe8321SBarry Smith   PetscErrorCode ierr;
24801302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24811302d50aSBarry Smith   PetscMPIInt    rank,size;
24821302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
248387828ca2SBarry Smith   PetscScalar    *va;
24848a1c53f2SBarry Smith   MatScalar      *ba;
2485f4c0e9e4SHong Zhang   MPI_Status     stat;
248624d5174aSHong Zhang 
248724d5174aSHong Zhang   PetscFunctionBegin;
2488e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
24890298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
24901ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2491f4c0e9e4SHong Zhang 
2492ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2493ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2494f4c0e9e4SHong Zhang 
2495d0f46423SBarry Smith   bs  = A->rmap->bs;
2496f4c0e9e4SHong Zhang   mbs = a->mbs;
2497f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2498f4c0e9e4SHong Zhang   ba  = b->a;
2499f4c0e9e4SHong Zhang   bi  = b->i;
2500f4c0e9e4SHong Zhang   bj  = b->j;
2501f4c0e9e4SHong Zhang 
2502f4c0e9e4SHong Zhang   /* find ownerships */
2503d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2504f4c0e9e4SHong Zhang 
2505f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2506785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2507ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2508f4c0e9e4SHong Zhang 
2509f4c0e9e4SHong Zhang   /* row_max for B */
2510b8475685SHong Zhang   if (rank != size-1) {
2511f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2512f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2513f4c0e9e4SHong Zhang       brow  = bs*i;
2514f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2515f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2516f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2517ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
251804d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2519f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2520f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2521ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2522ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2523f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2524f4c0e9e4SHong Zhang           }
2525f4c0e9e4SHong Zhang         }
2526f4c0e9e4SHong Zhang         bj++;
2527f4c0e9e4SHong Zhang       }
2528f4c0e9e4SHong Zhang     }
2529f4c0e9e4SHong Zhang 
2530f4c0e9e4SHong Zhang     /* send values to its owners */
2531f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2532f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2533ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2534ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2535ca54ac64SHong Zhang     }
2536f4c0e9e4SHong Zhang   }
2537f4c0e9e4SHong Zhang 
2538f4c0e9e4SHong Zhang   /* receive values */
2539ca54ac64SHong Zhang   if (rank) {
2540f4c0e9e4SHong Zhang     rvalues = work;
2541ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2542f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2543ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2544f4c0e9e4SHong Zhang       /* process values */
2545f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2546ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2547f4c0e9e4SHong Zhang       }
2548f4c0e9e4SHong Zhang     }
2549ca54ac64SHong Zhang   }
2550f4c0e9e4SHong Zhang 
25511ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2552ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
255324d5174aSHong Zhang   PetscFunctionReturn(0);
255424d5174aSHong Zhang }
25552798e883SHong Zhang 
25562798e883SHong Zhang #undef __FUNCT__
255741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
255841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25592798e883SHong Zhang {
25602798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2561dfbe8321SBarry Smith   PetscErrorCode    ierr;
2562d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25633649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2564ffe4fb16SHong Zhang   Vec               bb1;
25653649974fSBarry Smith   const PetscScalar *b;
2566ffe4fb16SHong Zhang 
2567ffe4fb16SHong Zhang   PetscFunctionBegin;
2568e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2569e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2570ffe4fb16SHong Zhang 
2571a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
257241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2573a2b30743SBarry Smith     PetscFunctionReturn(0);
2574a2b30743SBarry Smith   }
2575a2b30743SBarry Smith 
2576ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2577ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
257841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2579ffe4fb16SHong Zhang       its--;
2580ffe4fb16SHong Zhang     }
2581ffe4fb16SHong Zhang 
2582ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2583ffe4fb16SHong Zhang     while (its--) {
2584ffe4fb16SHong Zhang 
2585ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2586ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2587ffe4fb16SHong Zhang 
2588ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25891ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25901ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2591ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25921ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2593ffe4fb16SHong Zhang 
2594efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2595ffe4fb16SHong Zhang 
2596ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25971ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25983649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2599ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26001ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2601ffe4fb16SHong Zhang 
2602ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2603fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2604ffe4fb16SHong Zhang 
2605ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26061ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2607a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2608ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2609ffe4fb16SHong Zhang 
2610ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2611ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2612ffe4fb16SHong Zhang 
2613ffe4fb16SHong Zhang       /* local diagonal sweep */
261441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2615ffe4fb16SHong Zhang     }
26166bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2617fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
261841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2619fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
262041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2621fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2622fa22f6d0SBarry Smith     Vec               xx1;
2623ace3abfcSBarry Smith     PetscBool         hasop;
262420f1ed55SBarry Smith     const PetscScalar *diag;
2625887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
262620f1ed55SBarry Smith     PetscInt          i,n;
2627fa22f6d0SBarry Smith 
2628fa22f6d0SBarry Smith     if (!mat->xx1) {
2629fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2630fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2631fa22f6d0SBarry Smith     }
2632fa22f6d0SBarry Smith     xx1 = mat->xx1;
2633fa22f6d0SBarry Smith     bb1 = mat->bb1;
2634fa22f6d0SBarry Smith 
263541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2636fa22f6d0SBarry Smith 
2637fa22f6d0SBarry Smith     if (!mat->diag) {
2638effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26392a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2640fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2641fa22f6d0SBarry Smith     }
2642fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2643fa22f6d0SBarry Smith 
2644fa22f6d0SBarry Smith     if (hasop) {
2645fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2646887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
264720f1ed55SBarry Smith     } else {
264820f1ed55SBarry Smith       /*
264920f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
265020f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2651887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
265220f1ed55SBarry Smith       */
265320f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26543649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26553649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
265620f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
265720f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2658887ee2caSBarry Smith       if (omega == 1.0) {
265926fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
266020f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2661887ee2caSBarry Smith       } else {
266226fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2663887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2664887ee2caSBarry Smith       }
266520f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26663649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26673649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
266820f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
266920f1ed55SBarry Smith     }
2670fa22f6d0SBarry Smith 
2671fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2672fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2673fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2674fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2675fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2676fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2677fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2678fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2679fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2680fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2681effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2682fa22f6d0SBarry Smith 
2683fa22f6d0SBarry Smith     /* local sweep */
268441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2685fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2686f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2687ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2688ffe4fb16SHong Zhang }
2689ffe4fb16SHong Zhang 
2690ffe4fb16SHong Zhang #undef __FUNCT__
269141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
269241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2693ffe4fb16SHong Zhang {
2694ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2695dfbe8321SBarry Smith   PetscErrorCode ierr;
26962798e883SHong Zhang   Vec            lvec1,bb1;
26972798e883SHong Zhang 
26982798e883SHong Zhang   PetscFunctionBegin;
2699e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2700e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27012798e883SHong Zhang 
2702c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
27032798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
270441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27052798e883SHong Zhang       its--;
27062798e883SHong Zhang     }
27072798e883SHong Zhang 
27082798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27092798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27102798e883SHong Zhang     while (its--) {
2711ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27122798e883SHong Zhang 
27132798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27142798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2715efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27162798e883SHong Zhang 
2717ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27182798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2719ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27202798e883SHong Zhang 
27212798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2722efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27232798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27242798e883SHong Zhang 
2725ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27262798e883SHong Zhang 
2727c14dc6b6SHong Zhang       /* diagonal sweep */
272841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27292798e883SHong Zhang     }
27306bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27316bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27326bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27332798e883SHong Zhang   PetscFunctionReturn(0);
27342798e883SHong Zhang }
27352798e883SHong Zhang 
2736dfb205c3SBarry Smith #undef __FUNCT__
2737dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2738dfb205c3SBarry Smith /*@
2739dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2740dfb205c3SBarry Smith          CSR format the local rows.
2741dfb205c3SBarry Smith 
2742dfb205c3SBarry Smith    Collective on MPI_Comm
2743dfb205c3SBarry Smith 
2744dfb205c3SBarry Smith    Input Parameters:
2745dfb205c3SBarry Smith +  comm - MPI communicator
2746dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2747dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2748dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2749dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2750dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2751dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2752dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2753dfb205c3SBarry Smith .   i - row indices
2754dfb205c3SBarry Smith .   j - column indices
2755dfb205c3SBarry Smith -   a - matrix values
2756dfb205c3SBarry Smith 
2757dfb205c3SBarry Smith    Output Parameter:
2758dfb205c3SBarry Smith .   mat - the matrix
2759dfb205c3SBarry Smith 
2760dfb205c3SBarry Smith    Level: intermediate
2761dfb205c3SBarry Smith 
2762dfb205c3SBarry Smith    Notes:
2763dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2764dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2765dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2766dfb205c3SBarry Smith 
2767dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2768dfb205c3SBarry Smith 
2769dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2770dfb205c3SBarry Smith 
2771dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
277269b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2773dfb205c3SBarry Smith @*/
27747087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2775dfb205c3SBarry Smith {
2776dfb205c3SBarry Smith   PetscErrorCode ierr;
2777dfb205c3SBarry Smith 
2778dfb205c3SBarry Smith 
2779dfb205c3SBarry Smith   PetscFunctionBegin;
2780f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2781dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2782dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2783dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2784dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2785dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2786dfb205c3SBarry Smith   PetscFunctionReturn(0);
2787dfb205c3SBarry Smith }
2788dfb205c3SBarry Smith 
2789dfb205c3SBarry Smith 
2790dfb205c3SBarry Smith #undef __FUNCT__
2791dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2792dfb205c3SBarry Smith /*@C
2793dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2794dfb205c3SBarry Smith    (the default parallel PETSc format).
2795dfb205c3SBarry Smith 
2796dfb205c3SBarry Smith    Collective on MPI_Comm
2797dfb205c3SBarry Smith 
2798dfb205c3SBarry Smith    Input Parameters:
27991c4f3114SJed Brown +  B - the matrix
2800dfb205c3SBarry Smith .  bs - the block size
2801dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2802dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2803dfb205c3SBarry Smith -  v - optional values in the matrix
2804dfb205c3SBarry Smith 
2805dfb205c3SBarry Smith    Level: developer
2806dfb205c3SBarry Smith 
2807dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2808dfb205c3SBarry Smith 
280969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2810dfb205c3SBarry Smith @*/
28117087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2812dfb205c3SBarry Smith {
28134ac538c5SBarry Smith   PetscErrorCode ierr;
2814dfb205c3SBarry Smith 
2815dfb205c3SBarry Smith   PetscFunctionBegin;
28164ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2817dfb205c3SBarry Smith   PetscFunctionReturn(0);
2818dfb205c3SBarry Smith }
2819dfb205c3SBarry Smith 
2820de4b53ebSHong Zhang #undef __FUNCT__
28214dcd73b1SHong Zhang #define __FUNCT__ "MatCreateMPISBAIJConcatenateSeqSBAIJSymbolic"
28224dcd73b1SHong Zhang PetscErrorCode MatCreateMPISBAIJConcatenateSeqSBAIJSymbolic(MPI_Comm comm,Mat inmat,PetscInt n,Mat *outmat)
28234dcd73b1SHong Zhang {
28244dcd73b1SHong Zhang   PetscErrorCode ierr;
28254dcd73b1SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
28264dcd73b1SHong Zhang   PetscInt       m,N,i,rstart,nnz,*dnz,*onz,sum,bs,cbs;
28274dcd73b1SHong Zhang   PetscInt       *indx,*bindx,rmax=a->rmax,j;
28284dcd73b1SHong Zhang 
28294dcd73b1SHong Zhang   PetscFunctionBegin;
28304dcd73b1SHong Zhang   /* This routine will ONLY return MPISBAIJ type matrix */
28314dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
28324dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
28334dcd73b1SHong Zhang   m = m/bs; N = N/cbs;
28344dcd73b1SHong Zhang   if (n == PETSC_DECIDE) {
28354dcd73b1SHong Zhang     ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
28364dcd73b1SHong Zhang   }
28374dcd73b1SHong Zhang   /* Check sum(n) = N */
28384dcd73b1SHong Zhang   ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
28394dcd73b1SHong Zhang   if (sum != N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",N);
28404dcd73b1SHong Zhang 
28414dcd73b1SHong Zhang   ierr    = MPI_Scan(&m, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
28424dcd73b1SHong Zhang   rstart -= m;
28434dcd73b1SHong Zhang 
28444dcd73b1SHong Zhang   ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
28454dcd73b1SHong Zhang   ierr = MatPreallocateInitialize(comm,m,n,dnz,onz);CHKERRQ(ierr);
2846e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
28474dcd73b1SHong Zhang   for (i=0; i<m; i++) {
28484dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
28494dcd73b1SHong Zhang     nnz = nnz/bs;
28504dcd73b1SHong Zhang     for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
28514dcd73b1SHong Zhang     ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
28524dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
28534dcd73b1SHong Zhang   }
2854e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
28554dcd73b1SHong Zhang   ierr = PetscFree(bindx);CHKERRQ(ierr);
28564dcd73b1SHong Zhang 
28574dcd73b1SHong Zhang   ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
28584dcd73b1SHong Zhang   ierr = MatSetSizes(*outmat,m*bs,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
28594dcd73b1SHong Zhang   ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
28604dcd73b1SHong Zhang   ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
28614dcd73b1SHong Zhang   ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
28624dcd73b1SHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
28634dcd73b1SHong Zhang   PetscFunctionReturn(0);
28644dcd73b1SHong Zhang }
28654dcd73b1SHong Zhang 
28664dcd73b1SHong Zhang #undef __FUNCT__
28674dcd73b1SHong Zhang #define __FUNCT__ "MatCreateMPISBAIJConcatenateSeqSBAIJNumeric"
28684dcd73b1SHong Zhang PetscErrorCode MatCreateMPISBAIJConcatenateSeqSBAIJNumeric(MPI_Comm comm,Mat inmat,PetscInt n,Mat outmat)
28694dcd73b1SHong Zhang {
28704dcd73b1SHong Zhang   PetscErrorCode ierr;
28714dcd73b1SHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
28724dcd73b1SHong Zhang   PetscInt       *indx;
28734dcd73b1SHong Zhang   PetscScalar    *values;
28744dcd73b1SHong Zhang 
28754dcd73b1SHong Zhang   PetscFunctionBegin;
28764dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
28774dcd73b1SHong Zhang    ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
28784dcd73b1SHong Zhang   ierr = MatGetOwnershipRange(outmat,&rstart,NULL);CHKERRQ(ierr);
28794dcd73b1SHong Zhang 
2880e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
28814dcd73b1SHong Zhang   for (i=0; i<m; i++) {
28824dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
28834dcd73b1SHong Zhang     Ii   = i + rstart;
28844dcd73b1SHong Zhang     ierr = MatSetValues(outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
28854dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
28864dcd73b1SHong Zhang   }
2887e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
28884dcd73b1SHong Zhang   ierr = MatAssemblyBegin(outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28894dcd73b1SHong Zhang   ierr = MatAssemblyEnd(outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28904dcd73b1SHong Zhang   PetscFunctionReturn(0);
28914dcd73b1SHong Zhang }
28924dcd73b1SHong Zhang 
28934dcd73b1SHong Zhang #undef __FUNCT__
289459f5e6ceSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
289559f5e6ceSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28964dcd73b1SHong Zhang {
28974dcd73b1SHong Zhang   PetscErrorCode ierr;
28984dcd73b1SHong Zhang   PetscMPIInt    size;
28994dcd73b1SHong Zhang 
29004dcd73b1SHong Zhang   PetscFunctionBegin;
29014dcd73b1SHong Zhang   /* same as MatCreateMPIAIJConcatenateSeqAIJ() */
29024dcd73b1SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
29034dcd73b1SHong Zhang   ierr = PetscLogEventBegin(MAT_Merge,inmat,0,0,0);CHKERRQ(ierr);
29044dcd73b1SHong Zhang   if (size == 1) {
29054dcd73b1SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
29064dcd73b1SHong Zhang       ierr = MatDuplicate(inmat,MAT_COPY_VALUES,outmat);CHKERRQ(ierr);
29074dcd73b1SHong Zhang     } else {
29084dcd73b1SHong Zhang       ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
29094dcd73b1SHong Zhang     }
29104dcd73b1SHong Zhang   } else {
29114dcd73b1SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
29124dcd73b1SHong Zhang       ierr = MatCreateMPISBAIJConcatenateSeqSBAIJSymbolic(comm,inmat,n,outmat);CHKERRQ(ierr);
29134dcd73b1SHong Zhang     }
29144dcd73b1SHong Zhang     ierr = MatCreateMPISBAIJConcatenateSeqSBAIJNumeric(comm,inmat,n,*outmat);CHKERRQ(ierr);
29154dcd73b1SHong Zhang   }
29164dcd73b1SHong Zhang   ierr = PetscLogEventEnd(MAT_Merge,inmat,0,0,0);CHKERRQ(ierr);
29174dcd73b1SHong Zhang   PetscFunctionReturn(0);
29184dcd73b1SHong Zhang }
2919