xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision acfcf0e5ba359b58e6a8a7af3f239cd7334278e8)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6f3da1532SBarry Smith #include "petscblaslapack.h"
7a30f8f8cSSatish Balay 
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay EXTERN_C_BEGIN
254a2ae208SSatish Balay #undef __FUNCT__
264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
28a30f8f8cSSatish Balay {
29f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
30dfbe8321SBarry Smith   PetscErrorCode ierr;
31a30f8f8cSSatish Balay 
32a30f8f8cSSatish Balay   PetscFunctionBegin;
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   PetscFunctionReturn(0);
36a30f8f8cSSatish Balay }
37a30f8f8cSSatish Balay EXTERN_C_END
38a30f8f8cSSatish Balay 
39a30f8f8cSSatish Balay EXTERN_C_BEGIN
404a2ae208SSatish Balay #undef __FUNCT__
414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
43a30f8f8cSSatish Balay {
44f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
45dfbe8321SBarry Smith   PetscErrorCode ierr;
46a30f8f8cSSatish Balay 
47a30f8f8cSSatish Balay   PetscFunctionBegin;
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
50a30f8f8cSSatish Balay   PetscFunctionReturn(0);
51a30f8f8cSSatish Balay }
52a30f8f8cSSatish Balay EXTERN_C_END
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay 
55a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
56a30f8f8cSSatish Balay { \
57a30f8f8cSSatish Balay  \
58a30f8f8cSSatish Balay     brow = row/bs;  \
59a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
60a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
61a30f8f8cSSatish Balay       bcol = col/bs; \
62a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
63a30f8f8cSSatish Balay       low = 0; high = nrow; \
64a30f8f8cSSatish Balay       while (high-low > 3) { \
65a30f8f8cSSatish Balay         t = (low+high)/2; \
66a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
67a30f8f8cSSatish Balay         else              low  = t; \
68a30f8f8cSSatish Balay       } \
69a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
70a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
71a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
72a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
73a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
74a30f8f8cSSatish Balay           else                    *bap  = value;  \
75a30f8f8cSSatish Balay           goto a_noinsert; \
76a30f8f8cSSatish Balay         } \
77a30f8f8cSSatish Balay       } \
78a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
79e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
80fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
81a30f8f8cSSatish Balay       N = nrow++ - 1;  \
82a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
83a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
84a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
85a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
86a30f8f8cSSatish Balay       } \
87a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
88a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
89a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
90a30f8f8cSSatish Balay       a_noinsert:; \
91a30f8f8cSSatish Balay     ailen[brow] = nrow; \
92a30f8f8cSSatish Balay }
93e5e170daSBarry Smith 
94a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
95a30f8f8cSSatish Balay { \
96a30f8f8cSSatish Balay     brow = row/bs;  \
97a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
98a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
99a30f8f8cSSatish Balay       bcol = col/bs; \
100a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
101a30f8f8cSSatish Balay       low = 0; high = nrow; \
102a30f8f8cSSatish Balay       while (high-low > 3) { \
103a30f8f8cSSatish Balay         t = (low+high)/2; \
104a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
105a30f8f8cSSatish Balay         else              low  = t; \
106a30f8f8cSSatish Balay       } \
107a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
108a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
109a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
110a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
111a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
112a30f8f8cSSatish Balay           else                    *bap  = value;  \
113a30f8f8cSSatish Balay           goto b_noinsert; \
114a30f8f8cSSatish Balay         } \
115a30f8f8cSSatish Balay       } \
116a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
117e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
118fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
119a30f8f8cSSatish Balay       N = nrow++ - 1;  \
120a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
121a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
122a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
124a30f8f8cSSatish Balay       } \
125a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
126a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
127a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
128a30f8f8cSSatish Balay       b_noinsert:; \
129a30f8f8cSSatish Balay     bilen[brow] = nrow; \
130a30f8f8cSSatish Balay }
131a30f8f8cSSatish Balay 
132a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
133a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
134a30f8f8cSSatish Balay */
1354a2ae208SSatish Balay #undef __FUNCT__
136dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
137dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
138a30f8f8cSSatish Balay {
139a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
140a30f8f8cSSatish Balay   MatScalar      value;
141ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
142dfbe8321SBarry Smith   PetscErrorCode ierr;
1431302d50aSBarry Smith   PetscInt       i,j,row,col;
144d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
145d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
146d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
147a30f8f8cSSatish Balay 
148a30f8f8cSSatish Balay   /* Some Variables required in the macro */
149a30f8f8cSSatish Balay   Mat            A = baij->A;
150a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1511302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
152a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
153a30f8f8cSSatish Balay 
154a30f8f8cSSatish Balay   Mat            B = baij->B;
155a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1561302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
157a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
158a30f8f8cSSatish Balay 
1591302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1601302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
161a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
162a30f8f8cSSatish Balay 
163a30f8f8cSSatish Balay   /* for stash */
164910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
165910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
166a30f8f8cSSatish Balay 
167a30f8f8cSSatish Balay   PetscFunctionBegin;
16871fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
169a30f8f8cSSatish Balay   if (!baij->donotstash){
17059ffdab8SBarry Smith     if (n > baij->n_loc) {
17159ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       baij->n_loc = n;
17659ffdab8SBarry Smith     }
17759ffdab8SBarry Smith     in_loc = baij->in_loc;
17859ffdab8SBarry Smith     v_loc  = baij->v_loc;
179a30f8f8cSSatish Balay   }
180a30f8f8cSSatish Balay 
181a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
182a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
184e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
185a30f8f8cSSatish Balay #endif
186a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
187a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
188a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18901b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19001b2bd88SHong Zhang           if (a->ignore_ltriangular){
19101b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19201b2bd88SHong Zhang           } else {
193e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19401b2bd88SHong Zhang           }
19501b2bd88SHong Zhang         }
196a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
197a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
198a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
199a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
200a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
201a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
202a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
203a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
205cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
206a30f8f8cSSatish Balay #endif
207a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
208a30f8f8cSSatish Balay           if (mat->was_assembled) {
209a30f8f8cSSatish Balay             if (!baij->colmap) {
210653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
211a30f8f8cSSatish Balay             }
212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
213a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21471730473SSatish Balay             col  = col - 1;
215a30f8f8cSSatish Balay #else
21671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
217a30f8f8cSSatish Balay #endif
218a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
219a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
220a30f8f8cSSatish Balay               col =  in[j];
221a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
222a30f8f8cSSatish Balay               B = baij->B;
223a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
224a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
225a30f8f8cSSatish Balay               ba=b->a;
22671730473SSatish Balay             } else col += in[j]%bs;
227a30f8f8cSSatish Balay           } else col = in[j];
228a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
230a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
231a30f8f8cSSatish Balay         }
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     } else {  /* off processor entry */
2344cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
261ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
281e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286f3f98c53SJed Brown         if (im[i] > in[j]) {
287f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++  = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3120880e062SHong Zhang         }
3130880e062SHong Zhang         else if (in[j] < 0) continue;
3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
315cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3160880e062SHong Zhang #endif
3170880e062SHong Zhang         else {
3180880e062SHong Zhang           if (mat->was_assembled) {
3190880e062SHong Zhang             if (!baij->colmap) {
320653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3210880e062SHong Zhang             }
3220880e062SHong Zhang 
3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3251302d50aSBarry Smith             { PetscInt data;
3260880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
327e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3280880e062SHong Zhang             }
3290880e062SHong Zhang #else
330e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #endif
3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3340880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3350880e062SHong Zhang             col  = (col - 1)/bs;
3360880e062SHong Zhang #else
3370880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3380880e062SHong Zhang #endif
3390880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3400880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3410880e062SHong Zhang               col =  in[j];
3420880e062SHong Zhang             }
3430880e062SHong Zhang           }
3440880e062SHong Zhang           else col = in[j];
345e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3460880e062SHong Zhang         }
3470880e062SHong Zhang       }
3480880e062SHong Zhang     } else {
3494cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3500880e062SHong Zhang       if (!baij->donotstash) {
3510880e062SHong Zhang         if (roworiented) {
3520880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         } else {
3540880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3550880e062SHong Zhang         }
3560880e062SHong Zhang       }
3570880e062SHong Zhang     }
3580880e062SHong Zhang   }
3590880e062SHong Zhang   PetscFunctionReturn(0);
360a30f8f8cSSatish Balay }
361a30f8f8cSSatish Balay 
3624a2ae208SSatish Balay #undef __FUNCT__
3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
365a30f8f8cSSatish Balay {
366f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3676849ba73SBarry Smith   PetscErrorCode ierr;
368d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
369d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
370a30f8f8cSSatish Balay 
371a30f8f8cSSatish Balay   PetscFunctionBegin;
372a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
373e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
374e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
375a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
376a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
377a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
378e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
379e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
380a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
381a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
382c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
383a30f8f8cSSatish Balay         } else {
384a30f8f8cSSatish Balay           if (!baij->colmap) {
385653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
386a30f8f8cSSatish Balay           }
387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
388a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
389a30f8f8cSSatish Balay           data --;
390a30f8f8cSSatish Balay #else
391a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
392a30f8f8cSSatish Balay #endif
393a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
394a30f8f8cSSatish Balay           else {
395a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
396e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
397a30f8f8cSSatish Balay           }
398a30f8f8cSSatish Balay         }
399a30f8f8cSSatish Balay       }
400a30f8f8cSSatish Balay     } else {
401e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
402a30f8f8cSSatish Balay     }
403a30f8f8cSSatish Balay   }
404a30f8f8cSSatish Balay  PetscFunctionReturn(0);
405a30f8f8cSSatish Balay }
406a30f8f8cSSatish Balay 
4074a2ae208SSatish Balay #undef __FUNCT__
4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
410a30f8f8cSSatish Balay {
411a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
412dfbe8321SBarry Smith   PetscErrorCode ierr;
413a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
414a30f8f8cSSatish Balay 
415a30f8f8cSSatish Balay   PetscFunctionBegin;
416a30f8f8cSSatish Balay   if (baij->size == 1) {
417a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
418a30f8f8cSSatish Balay   } else {
419a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
420f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
423a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4257adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
426a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
427a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4280b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4290b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4300b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4310b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
432899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
433d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4340b8dc8d2SHong Zhang       MatScalar    *v;
4350b8dc8d2SHong Zhang 
43674ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
437d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4380b8dc8d2SHong Zhang       /* Amat */
4390b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4420b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4440b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4450b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4460b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4470b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4490b8dc8d2SHong Zhang               /* non-diagonal block */
4500b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4510b8dc8d2SHong Zhang             }
4520b8dc8d2SHong Zhang           }
4530b8dc8d2SHong Zhang         }
4540b8dc8d2SHong Zhang       }
4550b8dc8d2SHong Zhang       /* Bmat */
4560b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4570b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4580b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4590b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4600b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4610b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4620b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4630b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4640b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4650b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4660b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4670b8dc8d2SHong Zhang             }
4680b8dc8d2SHong Zhang           }
4690b8dc8d2SHong Zhang         }
4700b8dc8d2SHong Zhang       }
471d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4720b8dc8d2SHong Zhang       *norm = 0.0;
473d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4740b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4750b8dc8d2SHong Zhang       }
47674ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
477a30f8f8cSSatish Balay     } else {
478e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
479a30f8f8cSSatish Balay     }
480a30f8f8cSSatish Balay   }
481a30f8f8cSSatish Balay   PetscFunctionReturn(0);
482a30f8f8cSSatish Balay }
483a30f8f8cSSatish Balay 
4844a2ae208SSatish Balay #undef __FUNCT__
4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
487a30f8f8cSSatish Balay {
488a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
489dfbe8321SBarry Smith   PetscErrorCode ierr;
4901302d50aSBarry Smith   PetscInt       nstash,reallocs;
491a30f8f8cSSatish Balay   InsertMode     addv;
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   PetscFunctionBegin;
4944cb17eb5SBarry Smith   if (baij->donotstash || mat->nooffprocentries) {
495a30f8f8cSSatish Balay     PetscFunctionReturn(0);
496a30f8f8cSSatish Balay   }
497a30f8f8cSSatish Balay 
498a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4997adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
500e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
501a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
502a30f8f8cSSatish Balay 
503d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5081e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
509a30f8f8cSSatish Balay   PetscFunctionReturn(0);
510a30f8f8cSSatish Balay }
511a30f8f8cSSatish Balay 
5124a2ae208SSatish Balay #undef __FUNCT__
5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
515a30f8f8cSSatish Balay {
516a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
517a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5186849ba73SBarry Smith   PetscErrorCode ierr;
51913f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
520e44c0bd4SBarry Smith   PetscInt       *row,*col;
521ace3abfcSBarry Smith   PetscBool      other_disassembled;
52213f74950SBarry Smith   PetscMPIInt    n;
523ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
524a30f8f8cSSatish Balay   MatScalar      *val;
525a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
526a30f8f8cSSatish Balay 
52791c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
528a30f8f8cSSatish Balay   PetscFunctionBegin;
529a30f8f8cSSatish Balay 
5304cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
531a30f8f8cSSatish Balay     while (1) {
532a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
533a30f8f8cSSatish Balay       if (!flg) break;
534a30f8f8cSSatish Balay 
535a30f8f8cSSatish Balay       for (i=0; i<n;) {
536a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
537a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
538a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
539a30f8f8cSSatish Balay         else       ncols = n-i;
540a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
541dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
542a30f8f8cSSatish Balay         i = j;
543a30f8f8cSSatish Balay       }
544a30f8f8cSSatish Balay     }
545a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
546a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
547a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
548a30f8f8cSSatish Balay        restore the original flags */
549a30f8f8cSSatish Balay     r1 = baij->roworiented;
550a30f8f8cSSatish Balay     r2 = a->roworiented;
55191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
552a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
553a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
555a30f8f8cSSatish Balay     while (1) {
556a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
557a30f8f8cSSatish Balay       if (!flg) break;
558a30f8f8cSSatish Balay 
559a30f8f8cSSatish Balay       for (i=0; i<n;) {
560a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
561a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
562a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
563a30f8f8cSSatish Balay         else       ncols = n-i;
564dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
565a30f8f8cSSatish Balay         i = j;
566a30f8f8cSSatish Balay       }
567a30f8f8cSSatish Balay     }
568a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
569a30f8f8cSSatish Balay     baij->roworiented = r1;
570a30f8f8cSSatish Balay     a->roworiented    = r2;
57191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
572a30f8f8cSSatish Balay   }
573a30f8f8cSSatish Balay 
574a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
576a30f8f8cSSatish Balay 
577a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
578a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
579a30f8f8cSSatish Balay   /*
580a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
581a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
582a30f8f8cSSatish Balay   */
583a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5847adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
586c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
587a30f8f8cSSatish Balay     }
588a30f8f8cSSatish Balay   }
589a30f8f8cSSatish Balay 
590a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
592a30f8f8cSSatish Balay   }
59391c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
594a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
595a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
596a30f8f8cSSatish Balay 
59774ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
598a30f8f8cSSatish Balay   baij->rowvalues = 0;
5995222a1afSHong Zhang 
600a30f8f8cSSatish Balay   PetscFunctionReturn(0);
601a30f8f8cSSatish Balay }
602a30f8f8cSSatish Balay 
603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6044a2ae208SSatish Balay #undef __FUNCT__
6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
607a30f8f8cSSatish Balay {
608a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
609dfbe8321SBarry Smith   PetscErrorCode    ierr;
610d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6111302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
612ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
613b0a32e0cSBarry Smith   PetscViewer       sviewer;
614f3ef73ceSBarry Smith   PetscViewerFormat format;
615a30f8f8cSSatish Balay 
616a30f8f8cSSatish Balay   PetscFunctionBegin;
6172692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
6182692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61932077d6dSBarry Smith   if (iascii) {
620b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
621456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
622a30f8f8cSSatish Balay       MatInfo info;
6237adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
624a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
62616608c43SJed Brown              rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
627a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
628e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
629a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
630e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
631b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63207d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
633a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
634a30f8f8cSSatish Balay       PetscFunctionReturn(0);
635fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63677431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
637a30f8f8cSSatish Balay       PetscFunctionReturn(0);
638c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
639c1490034SHong Zhang       PetscFunctionReturn(0);
640a30f8f8cSSatish Balay     }
641a30f8f8cSSatish Balay   }
642a30f8f8cSSatish Balay 
643a30f8f8cSSatish Balay   if (isdraw) {
644b0a32e0cSBarry Smith     PetscDraw  draw;
645ace3abfcSBarry Smith     PetscBool  isnull;
646b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
647b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
648a30f8f8cSSatish Balay   }
649a30f8f8cSSatish Balay 
650a30f8f8cSSatish Balay   if (size == 1) {
6517adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
652a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
653a30f8f8cSSatish Balay   } else {
654a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
655a30f8f8cSSatish Balay     Mat          A;
65665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
658d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
659a30f8f8cSSatish Balay     MatScalar    *a;
660a30f8f8cSSatish Balay 
661f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6627adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
663a30f8f8cSSatish Balay     if (!rank) {
664f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
665a30f8f8cSSatish Balay     } else {
666f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
667a30f8f8cSSatish Balay     }
668f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
669d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
67052e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
671a30f8f8cSSatish Balay 
672a30f8f8cSSatish Balay     /* copy over the A part */
67365d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
674a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6751302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
676a30f8f8cSSatish Balay 
677a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
678e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
679a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
680a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
681e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
682a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
683dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
684a30f8f8cSSatish Balay           col++; a += bs;
685a30f8f8cSSatish Balay         }
686a30f8f8cSSatish Balay       }
687a30f8f8cSSatish Balay     }
688a30f8f8cSSatish Balay     /* copy over the B part */
68965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69065d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
691a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
692e9f7bc9eSHong Zhang 
693e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
694a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
695a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
696a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
697a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
698799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
699a30f8f8cSSatish Balay           col++; a += bs;
700a30f8f8cSSatish Balay         }
701a30f8f8cSSatish Balay       }
702a30f8f8cSSatish Balay     }
703a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     /*
707a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
708b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
709a30f8f8cSSatish Balay     */
710b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71165d70643SHong Zhang     if (!rank) {
7127adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7137566de4bSShri Abhyankar           /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/
7147566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ);
715a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
716a30f8f8cSSatish Balay     }
717b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
718a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
719a30f8f8cSSatish Balay   }
720a30f8f8cSSatish Balay   PetscFunctionReturn(0);
721a30f8f8cSSatish Balay }
722a30f8f8cSSatish Balay 
7234a2ae208SSatish Balay #undef __FUNCT__
7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
726a30f8f8cSSatish Balay {
727dfbe8321SBarry Smith   PetscErrorCode ierr;
728ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
729a30f8f8cSSatish Balay 
730a30f8f8cSSatish Balay   PetscFunctionBegin;
7312692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
7322692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7332692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
7342692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73532077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
736a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
737a30f8f8cSSatish Balay   } else {
738e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
739a30f8f8cSSatish Balay   }
740a30f8f8cSSatish Balay   PetscFunctionReturn(0);
741a30f8f8cSSatish Balay }
742a30f8f8cSSatish Balay 
7434a2ae208SSatish Balay #undef __FUNCT__
7444a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
745dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
746a30f8f8cSSatish Balay {
747a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
748dfbe8321SBarry Smith   PetscErrorCode ierr;
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   PetscFunctionBegin;
751a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
752d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
753a30f8f8cSSatish Balay #endif
754a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
75613ea16ffSHong Zhang   if (baij->A){ierr = MatDestroy(baij->A);CHKERRQ(ierr);}
75713ea16ffSHong Zhang   if (baij->B){ierr = MatDestroy(baij->B);CHKERRQ(ierr);}
758a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7599c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
760a30f8f8cSSatish Balay #else
76105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #endif
76305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
764a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
765a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76640781036SHong Zhang   if (baij->slvec0) {
76740781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76940781036SHong Zhang   }
77040781036SHong Zhang   if (baij->slvec1) {
77140781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
77240781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77340781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77440781036SHong Zhang   }
77540781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
7765755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77705b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77805b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
779fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
780fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
781fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
78265460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78305b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
784a30f8f8cSSatish Balay #endif
78559ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78659ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
787899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
788a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
789901853e0SKris Buschelman 
790dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
793901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
794901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
795a30f8f8cSSatish Balay   PetscFunctionReturn(0);
796a30f8f8cSSatish Balay }
797a30f8f8cSSatish Balay 
7984a2ae208SSatish Balay #undef __FUNCT__
799547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
800547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
801547795f9SHong Zhang {
802547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
803547795f9SHong Zhang   PetscErrorCode ierr;
804547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
805547795f9SHong Zhang   PetscScalar    *x,*from;
806547795f9SHong Zhang 
807547795f9SHong Zhang   PetscFunctionBegin;
808547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
809e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
810547795f9SHong Zhang 
811547795f9SHong Zhang   /* diagonal part */
812547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
813547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
814547795f9SHong Zhang 
815547795f9SHong Zhang   /* subdiagonal part */
816547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
817547795f9SHong Zhang 
818547795f9SHong Zhang   /* copy x into the vec slvec0 */
819547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
820547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
821547795f9SHong Zhang 
822547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
824547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
825547795f9SHong Zhang 
826547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
828547795f9SHong Zhang   /* supperdiagonal part */
829547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
830547795f9SHong Zhang   PetscFunctionReturn(0);
831547795f9SHong Zhang }
832547795f9SHong Zhang 
833547795f9SHong Zhang #undef __FUNCT__
834a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
835dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
836a9d4b620SHong Zhang {
837a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
838dfbe8321SBarry Smith   PetscErrorCode ierr;
839d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
840fa22f6d0SBarry Smith   PetscScalar    *x,*from;
841a9d4b620SHong Zhang 
842a9d4b620SHong Zhang   PetscFunctionBegin;
843a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
844e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
845a9d4b620SHong Zhang 
846a9d4b620SHong Zhang   /* diagonal part */
847a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
848fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
849a9d4b620SHong Zhang 
850a9d4b620SHong Zhang   /* subdiagonal part */
851a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
852fc165ae2SBarry Smith 
853a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8541ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8551ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
856a9d4b620SHong Zhang 
857fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
858fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8591ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
860fc165ae2SBarry Smith 
861fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
862ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
863a9d4b620SHong Zhang   /* supperdiagonal part */
864a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
865a9d4b620SHong Zhang   PetscFunctionReturn(0);
866a9d4b620SHong Zhang }
867a9d4b620SHong Zhang 
868a9d4b620SHong Zhang #undef __FUNCT__
86940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
870dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
871a30f8f8cSSatish Balay {
872a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
873dfbe8321SBarry Smith   PetscErrorCode ierr;
8741302d50aSBarry Smith   PetscInt       nt;
875a30f8f8cSSatish Balay 
876a30f8f8cSSatish Balay   PetscFunctionBegin;
877a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
878e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
879e7e72b3dSBarry Smith 
880a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
881e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88265d70643SHong Zhang 
883ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
884b941877fSHong Zhang   /* do diagonal part */
885b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
886b941877fSHong Zhang   /* do supperdiagonal part */
887ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
888b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
889b941877fSHong Zhang   /* do subdiagonal part */
890b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
891ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
892ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89365d70643SHong Zhang 
894a30f8f8cSSatish Balay   PetscFunctionReturn(0);
895a30f8f8cSSatish Balay }
896a30f8f8cSSatish Balay 
8974a2ae208SSatish Balay #undef __FUNCT__
8984a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
899dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
900a30f8f8cSSatish Balay {
901de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
902dfbe8321SBarry Smith   PetscErrorCode ierr;
903d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
904a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
905a9d4b620SHong Zhang 
906a9d4b620SHong Zhang   PetscFunctionBegin;
907a9d4b620SHong Zhang   /*
9087adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9097adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
910a9d4b620SHong Zhang   */
911a9d4b620SHong Zhang   /* diagonal part */
912a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9132dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
914a9d4b620SHong Zhang 
915a9d4b620SHong Zhang   /* subdiagonal part */
916a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
917a9d4b620SHong Zhang 
918a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9191ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9201ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
921a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9221ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
923a9d4b620SHong Zhang 
924ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9251ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
926ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
927a9d4b620SHong Zhang 
928a9d4b620SHong Zhang   /* supperdiagonal part */
929a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
930a9d4b620SHong Zhang 
931a9d4b620SHong Zhang   PetscFunctionReturn(0);
932a9d4b620SHong Zhang }
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang #undef __FUNCT__
935a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
936dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
937a9d4b620SHong Zhang {
938a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
939dfbe8321SBarry Smith   PetscErrorCode ierr;
940a30f8f8cSSatish Balay 
941a30f8f8cSSatish Balay   PetscFunctionBegin;
942ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
943b941877fSHong Zhang   /* do diagonal part */
944b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
945b941877fSHong Zhang   /* do supperdiagonal part */
946ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
947de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
948de8b6608SHong Zhang 
949b941877fSHong Zhang   /* do subdiagonal part */
950a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
951ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
952ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
953aa482183SHong Zhang 
954a30f8f8cSSatish Balay   PetscFunctionReturn(0);
955a30f8f8cSSatish Balay }
956a30f8f8cSSatish Balay 
957a30f8f8cSSatish Balay /*
958a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
959a30f8f8cSSatish Balay    diagonal block
960a30f8f8cSSatish Balay */
9614a2ae208SSatish Balay #undef __FUNCT__
9624a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
963dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
964a30f8f8cSSatish Balay {
965a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
966dfbe8321SBarry Smith   PetscErrorCode ierr;
967a30f8f8cSSatish Balay 
968a30f8f8cSSatish Balay   PetscFunctionBegin;
969e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
970a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
971a30f8f8cSSatish Balay   PetscFunctionReturn(0);
972a30f8f8cSSatish Balay }
973a30f8f8cSSatish Balay 
9744a2ae208SSatish Balay #undef __FUNCT__
9754a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
976f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
977a30f8f8cSSatish Balay {
978a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
979dfbe8321SBarry Smith   PetscErrorCode ierr;
980a30f8f8cSSatish Balay 
981a30f8f8cSSatish Balay   PetscFunctionBegin;
982f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
983f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
984a30f8f8cSSatish Balay   PetscFunctionReturn(0);
985a30f8f8cSSatish Balay }
986a30f8f8cSSatish Balay 
9874a2ae208SSatish Balay #undef __FUNCT__
9884a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9891302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
990a30f8f8cSSatish Balay {
991d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
992d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
993d0d4cfc2SHong Zhang   PetscErrorCode ierr;
994d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
995d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
996899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
997d0d4cfc2SHong Zhang 
998a30f8f8cSSatish Balay   PetscFunctionBegin;
999e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1000d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1001d0d4cfc2SHong Zhang 
1002d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1003d0d4cfc2SHong Zhang     /*
1004d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1005d0d4cfc2SHong Zhang     */
1006d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1007d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1008d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1009d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1010d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1011d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1012d0d4cfc2SHong Zhang     }
101374ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1014d0d4cfc2SHong Zhang   }
1015d0d4cfc2SHong Zhang 
1016e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1017d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1018d0d4cfc2SHong Zhang 
1019d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1020d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1021d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1022d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1023d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1024d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1025d0d4cfc2SHong Zhang 
1026d0d4cfc2SHong Zhang   cmap  = mat->garray;
1027d0d4cfc2SHong Zhang   if (v  || idx) {
1028d0d4cfc2SHong Zhang     if (nztot) {
1029d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1030d0d4cfc2SHong Zhang       PetscInt imark = -1;
1031d0d4cfc2SHong Zhang       if (v) {
1032d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1033d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1034d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1035d0d4cfc2SHong Zhang           else break;
1036d0d4cfc2SHong Zhang         }
1037d0d4cfc2SHong Zhang         imark = i;
1038d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1039d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1040d0d4cfc2SHong Zhang       }
1041d0d4cfc2SHong Zhang       if (idx) {
1042d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1043d0d4cfc2SHong Zhang         if (imark > -1) {
1044d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1045d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1046d0d4cfc2SHong Zhang           }
1047d0d4cfc2SHong Zhang         } else {
1048d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1049d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1050d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1051d0d4cfc2SHong Zhang             else break;
1052d0d4cfc2SHong Zhang           }
1053d0d4cfc2SHong Zhang           imark = i;
1054d0d4cfc2SHong Zhang         }
1055d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1056d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1057d0d4cfc2SHong Zhang       }
1058d0d4cfc2SHong Zhang     } else {
1059d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1060d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1061d0d4cfc2SHong Zhang     }
1062d0d4cfc2SHong Zhang   }
1063d0d4cfc2SHong Zhang   *nz = nztot;
1064d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1065d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1066a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1067a30f8f8cSSatish Balay }
1068a30f8f8cSSatish Balay 
10694a2ae208SSatish Balay #undef __FUNCT__
10704a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10711302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1072a30f8f8cSSatish Balay {
1073a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1074a30f8f8cSSatish Balay 
1075a30f8f8cSSatish Balay   PetscFunctionBegin;
1076e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1077a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1078a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1079a30f8f8cSSatish Balay }
1080a30f8f8cSSatish Balay 
10814a2ae208SSatish Balay #undef __FUNCT__
1082d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1083d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1084d0d4cfc2SHong Zhang {
1085d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1086d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1087d0d4cfc2SHong Zhang 
1088d0d4cfc2SHong Zhang   PetscFunctionBegin;
1089d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1090d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1091d0d4cfc2SHong Zhang }
1092d0d4cfc2SHong Zhang #undef __FUNCT__
1093d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1094d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1095d0d4cfc2SHong Zhang {
1096d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1097d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1098d0d4cfc2SHong Zhang 
1099d0d4cfc2SHong Zhang   PetscFunctionBegin;
1100d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1101d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1102d0d4cfc2SHong Zhang }
1103d0d4cfc2SHong Zhang 
1104d0d4cfc2SHong Zhang #undef __FUNCT__
110599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110799cafbc1SBarry Smith {
110899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110999cafbc1SBarry Smith   PetscErrorCode ierr;
111099cafbc1SBarry Smith 
111199cafbc1SBarry Smith   PetscFunctionBegin;
111299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111499cafbc1SBarry Smith   PetscFunctionReturn(0);
111599cafbc1SBarry Smith }
111699cafbc1SBarry Smith 
111799cafbc1SBarry Smith #undef __FUNCT__
111899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112099cafbc1SBarry Smith {
112199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112299cafbc1SBarry Smith   PetscErrorCode ierr;
112399cafbc1SBarry Smith 
112499cafbc1SBarry Smith   PetscFunctionBegin;
112599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112799cafbc1SBarry Smith   PetscFunctionReturn(0);
112899cafbc1SBarry Smith }
112999cafbc1SBarry Smith 
113099cafbc1SBarry Smith #undef __FUNCT__
11314a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1132dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1133a30f8f8cSSatish Balay {
1134a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1135dfbe8321SBarry Smith   PetscErrorCode ierr;
1136a30f8f8cSSatish Balay 
1137a30f8f8cSSatish Balay   PetscFunctionBegin;
1138a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1139a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1140a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1141a30f8f8cSSatish Balay }
1142a30f8f8cSSatish Balay 
11434a2ae208SSatish Balay #undef __FUNCT__
11444a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1145dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1146a30f8f8cSSatish Balay {
1147a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1148a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1149dfbe8321SBarry Smith   PetscErrorCode ierr;
1150a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1151a30f8f8cSSatish Balay 
1152a30f8f8cSSatish Balay   PetscFunctionBegin;
1153d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1154a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1155a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1156a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1157a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1158a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1159a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1160a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1161a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1162a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1163a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1164a30f8f8cSSatish Balay     info->memory       = isend[3];
1165a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1166a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11677adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1168a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1169a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1170a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1171a30f8f8cSSatish Balay     info->memory       = irecv[3];
1172a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1173a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11747adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1175a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1176a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1177a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1178a30f8f8cSSatish Balay     info->memory       = irecv[3];
1179a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1180a30f8f8cSSatish Balay   } else {
1181e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1182a30f8f8cSSatish Balay   }
1183a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1184a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1185a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1186a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1187a30f8f8cSSatish Balay }
1188a30f8f8cSSatish Balay 
11894a2ae208SSatish Balay #undef __FUNCT__
11904a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1191ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool  flg)
1192a30f8f8cSSatish Balay {
1193a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1194d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1195dfbe8321SBarry Smith   PetscErrorCode ierr;
1196a30f8f8cSSatish Balay 
1197a30f8f8cSSatish Balay   PetscFunctionBegin;
1198e98b92d7SKris Buschelman   switch (op) {
1199512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1200e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1202a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1203e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12044e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12054e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1206e98b92d7SKris Buschelman     break;
1207e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12084e0d8c25SBarry Smith     a->roworiented = flg;
12094e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12104e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1211e98b92d7SKris Buschelman     break;
12124e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1213290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1214e98b92d7SKris Buschelman     break;
1215e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12164e0d8c25SBarry Smith     a->donotstash = flg;
1217e98b92d7SKris Buschelman     break;
1218e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12194e0d8c25SBarry Smith     a->ht_flag = flg;
1220e98b92d7SKris Buschelman     break;
12219a4540c5SBarry Smith   case MAT_HERMITIAN:
1222e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1223eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1224547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1225eeffb40dSHong Zhang     break;
1226ffa07934SHong Zhang   case MAT_SPD:
1227ffa07934SHong Zhang     A->spd_set                         = PETSC_TRUE;
1228ffa07934SHong Zhang     A->spd                             = flg;
1229ffa07934SHong Zhang     if (flg) {
1230ffa07934SHong Zhang       A->symmetric                     = PETSC_TRUE;
1231ffa07934SHong Zhang       A->structurally_symmetric        = PETSC_TRUE;
1232ffa07934SHong Zhang       A->symmetric_set                 = PETSC_TRUE;
1233ffa07934SHong Zhang       A->structurally_symmetric_set    = PETSC_TRUE;
1234ffa07934SHong Zhang     }
1235ffa07934SHong Zhang     break;
123677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1237eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1238eeffb40dSHong Zhang     break;
123977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1240eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1241eeffb40dSHong Zhang     break;
12429a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1243e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1244290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124577e54ba9SKris Buschelman     break;
1246d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12474e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1248d0d4cfc2SHong Zhang     break;
1249d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12504e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1251d0d4cfc2SHong Zhang     break;
1252d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12534e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1254d0d4cfc2SHong Zhang     break;
1255e98b92d7SKris Buschelman   default:
1256e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1257a30f8f8cSSatish Balay   }
1258a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1259a30f8f8cSSatish Balay }
1260a30f8f8cSSatish Balay 
12614a2ae208SSatish Balay #undef __FUNCT__
12628115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1263fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1264a30f8f8cSSatish Balay {
1265dfbe8321SBarry Smith   PetscErrorCode ierr;
1266a30f8f8cSSatish Balay   PetscFunctionBegin;
1267815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1268999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1269fc4dec0aSBarry Smith   }
12708115998fSBarry Smith   PetscFunctionReturn(0);
1271a30f8f8cSSatish Balay }
1272a30f8f8cSSatish Balay 
12734a2ae208SSatish Balay #undef __FUNCT__
12744a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1275dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1276a30f8f8cSSatish Balay {
1277a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1278a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1279dfbe8321SBarry Smith   PetscErrorCode ierr;
12805e90f9d9SHong Zhang   PetscInt       nv,m,n;
1281ace3abfcSBarry Smith   PetscBool      flg;
1282a30f8f8cSSatish Balay 
1283a30f8f8cSSatish Balay   PetscFunctionBegin;
1284a30f8f8cSSatish Balay   if (ll != rr){
1285b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1286e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1287a30f8f8cSSatish Balay   }
1288b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1289b3bf805bSHong Zhang 
12905e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1291e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1292b3bf805bSHong Zhang 
12935e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1294e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12955e90f9d9SHong Zhang 
1296ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12975e90f9d9SHong Zhang 
12985e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1299a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13005e90f9d9SHong Zhang 
13015e90f9d9SHong Zhang   /* scale the diagonal part */
1302a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay 
13045e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1305ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1306a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1307a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1308a30f8f8cSSatish Balay }
1309a30f8f8cSSatish Balay 
13104a2ae208SSatish Balay #undef __FUNCT__
13114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1312dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1313a30f8f8cSSatish Balay {
1314f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1315dfbe8321SBarry Smith   PetscErrorCode ierr;
1316a30f8f8cSSatish Balay 
1317a30f8f8cSSatish Balay   PetscFunctionBegin;
1318a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1320a30f8f8cSSatish Balay }
1321a30f8f8cSSatish Balay 
13226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1323a30f8f8cSSatish Balay 
13244a2ae208SSatish Balay #undef __FUNCT__
13254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1326ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1327a30f8f8cSSatish Balay {
1328a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1329a30f8f8cSSatish Balay   Mat            a,b,c,d;
1330ace3abfcSBarry Smith   PetscBool      flg;
1331dfbe8321SBarry Smith   PetscErrorCode ierr;
1332a30f8f8cSSatish Balay 
1333a30f8f8cSSatish Balay   PetscFunctionBegin;
1334a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1335a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1336a30f8f8cSSatish Balay 
1337a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1338abc0a331SBarry Smith   if (flg) {
1339a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   }
13417adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1342a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1343a30f8f8cSSatish Balay }
1344a30f8f8cSSatish Balay 
13454a2ae208SSatish Balay #undef __FUNCT__
13463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13473c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13483c896bc6SHong Zhang {
13493c896bc6SHong Zhang   PetscErrorCode ierr;
13503c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13513c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13523c896bc6SHong Zhang 
13533c896bc6SHong Zhang   PetscFunctionBegin;
13543c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13553c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1356d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13573c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1358d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13593c896bc6SHong Zhang   } else {
13603c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13613c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13623c896bc6SHong Zhang   }
13633c896bc6SHong Zhang   PetscFunctionReturn(0);
13643c896bc6SHong Zhang }
13653c896bc6SHong Zhang 
13663c896bc6SHong Zhang #undef __FUNCT__
13674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1368dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1369273d9f13SBarry Smith {
1370dfbe8321SBarry Smith   PetscErrorCode ierr;
1371273d9f13SBarry Smith 
1372273d9f13SBarry Smith   PetscFunctionBegin;
1373db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1374273d9f13SBarry Smith   PetscFunctionReturn(0);
1375273d9f13SBarry Smith }
1376a5e6ed63SBarry Smith 
13774fe895cdSHong Zhang #undef __FUNCT__
13784fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13804fe895cdSHong Zhang {
13814fe895cdSHong Zhang   PetscErrorCode ierr;
13824fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13834fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13844fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13854fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13864fe895cdSHong Zhang 
13874fe895cdSHong Zhang   PetscFunctionBegin;
13884fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13894fe895cdSHong Zhang     PetscScalar alpha = a;
13904fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13914fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13920805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13934fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13944fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13954fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13960805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13974fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13984fe895cdSHong Zhang   } else {
1399d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14004fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1401d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14024fe895cdSHong Zhang   }
14034fe895cdSHong Zhang   PetscFunctionReturn(0);
14044fe895cdSHong Zhang }
14054fe895cdSHong Zhang 
1406a5e6ed63SBarry Smith #undef __FUNCT__
14076363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14086363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14096363de48SJed Brown {
14106363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14116363de48SJed Brown   PetscInt        rbs,cbs;
14126363de48SJed Brown   PetscErrorCode  ierr;
14136363de48SJed Brown 
14146363de48SJed Brown   PetscFunctionBegin;
14156363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14166363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14176363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14186363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1419e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1420e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14216363de48SJed Brown   PetscFunctionReturn(0);
14226363de48SJed Brown }
14236363de48SJed Brown 
14246363de48SJed Brown #undef __FUNCT__
1425a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14261302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1427a5e6ed63SBarry Smith {
14286849ba73SBarry Smith   PetscErrorCode ierr;
14291302d50aSBarry Smith   PetscInt       i;
1430ace3abfcSBarry Smith   PetscBool      flg;
1431a5e6ed63SBarry Smith 
14326849ba73SBarry Smith   PetscFunctionBegin;
1433a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1434a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1435e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1436a5e6ed63SBarry Smith   }
1437a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1438a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1439a5e6ed63SBarry Smith }
1440a5e6ed63SBarry Smith 
1441a5e6ed63SBarry Smith 
1442a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1443a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1444a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1446a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1447a9d4b620SHong Zhang        MatMult_MPISBAIJ,
144897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1449431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1450431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1451a30f8f8cSSatish Balay        0,
1452a30f8f8cSSatish Balay        0,
1453a30f8f8cSSatish Balay        0,
145497304618SKris Buschelman /*10*/ 0,
1455a30f8f8cSSatish Balay        0,
1456a30f8f8cSSatish Balay        0,
145741f059aeSBarry Smith        MatSOR_MPISBAIJ,
1458a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
145997304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1460a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1462a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1463a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1467a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1468d519adbfSMatthew Knepley /*24*/ 0,
1469a30f8f8cSSatish Balay        0,
1470a30f8f8cSSatish Balay        0,
1471a30f8f8cSSatish Balay        0,
1472a30f8f8cSSatish Balay        0,
1473d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1474b5df2d14SHong Zhang        0,
1475a30f8f8cSSatish Balay        0,
1476a30f8f8cSSatish Balay        0,
1477a30f8f8cSSatish Balay        0,
1478d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        0,
1482a30f8f8cSSatish Balay        0,
1483d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1484a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1485d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1486a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14873c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1488d519adbfSMatthew Knepley /*44*/ 0,
1489a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        0,
1492a30f8f8cSSatish Balay        0,
14936363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497a30f8f8cSSatish Balay        0,
1498d519adbfSMatthew Knepley /*54*/ 0,
1499a30f8f8cSSatish Balay        0,
1500a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1501a30f8f8cSSatish Balay        0,
1502a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1503d519adbfSMatthew Knepley /*59*/ 0,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        0,
1506357abbc8SBarry Smith        0,
150724d5174aSHong Zhang        0,
1508d519adbfSMatthew Knepley /*64*/ 0,
150924d5174aSHong Zhang        0,
151024d5174aSHong Zhang        0,
151124d5174aSHong Zhang        0,
151224d5174aSHong Zhang        0,
1513d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151424d5174aSHong Zhang        0,
151597304618SKris Buschelman        0,
151697304618SKris Buschelman        0,
151797304618SKris Buschelman        0,
1518d519adbfSMatthew Knepley /*74*/ 0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
152197304618SKris Buschelman        0,
152297304618SKris Buschelman        0,
1523d519adbfSMatthew Knepley /*79*/ 0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
152697304618SKris Buschelman        0,
15275bba2384SShri Abhyankar        MatLoad_MPISBAIJ,
1528d519adbfSMatthew Knepley /*84*/ 0,
1529865e5f61SKris Buschelman        0,
1530865e5f61SKris Buschelman        0,
1531865e5f61SKris Buschelman        0,
1532865e5f61SKris Buschelman        0,
1533d519adbfSMatthew Knepley /*89*/ 0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536865e5f61SKris Buschelman        0,
1537865e5f61SKris Buschelman        0,
1538d519adbfSMatthew Knepley /*94*/ 0,
1539865e5f61SKris Buschelman        0,
1540865e5f61SKris Buschelman        0,
154199cafbc1SBarry Smith        0,
154299cafbc1SBarry Smith        0,
1543d519adbfSMatthew Knepley /*99*/ 0,
154499cafbc1SBarry Smith        0,
154599cafbc1SBarry Smith        0,
154699cafbc1SBarry Smith        0,
154799cafbc1SBarry Smith        0,
1548d519adbfSMatthew Knepley /*104*/0,
154999cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1550d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1551d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
155295936485SShri Abhyankar        MatRestoreRowUpperTriangular_MPISBAIJ,
155395936485SShri Abhyankar /*109*/0,
155495936485SShri Abhyankar        0,
155595936485SShri Abhyankar        0,
155695936485SShri Abhyankar        0,
155795936485SShri Abhyankar        0,
155895936485SShri Abhyankar /*114*/0,
155995936485SShri Abhyankar        0,
156095936485SShri Abhyankar        0,
156195936485SShri Abhyankar        0,
156295936485SShri Abhyankar        0,
156395936485SShri Abhyankar /*119*/0,
156495936485SShri Abhyankar        0,
156595936485SShri Abhyankar        0,
15665bba2384SShri Abhyankar        0
156799cafbc1SBarry Smith };
1568a30f8f8cSSatish Balay 
1569a30f8f8cSSatish Balay 
1570a30f8f8cSSatish Balay EXTERN_C_BEGIN
15714a2ae208SSatish Balay #undef __FUNCT__
15724a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1573ace3abfcSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscBool  *iscopy,MatReuse reuse,Mat *a)
1574a30f8f8cSSatish Balay {
1575a30f8f8cSSatish Balay   PetscFunctionBegin;
1576a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1577a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1578a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1579a30f8f8cSSatish Balay }
1580a30f8f8cSSatish Balay EXTERN_C_END
1581a30f8f8cSSatish Balay 
1582273d9f13SBarry Smith EXTERN_C_BEGIN
15834a2ae208SSatish Balay #undef __FUNCT__
1584a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1585be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1586a23d5eceSKris Buschelman {
1587a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1588dfbe8321SBarry Smith   PetscErrorCode ierr;
1589db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1590a23d5eceSKris Buschelman 
1591a23d5eceSKris Buschelman   PetscFunctionBegin;
1592db4efbfdSBarry Smith   if (bs < 0){
15937adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1594db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15958c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1596db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1597db4efbfdSBarry Smith   }
1598e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1599db4efbfdSBarry Smith   bs = newbs;
1600a23d5eceSKris Buschelman 
1601a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1602a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1603e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1604e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1605899cda47SBarry Smith 
1606d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
160726283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
160826283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1609899cda47SBarry Smith 
1610a23d5eceSKris Buschelman   if (d_nnz) {
1611d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1612e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1613a23d5eceSKris Buschelman     }
1614a23d5eceSKris Buschelman   }
1615a23d5eceSKris Buschelman   if (o_nnz) {
1616d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1617e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1618a23d5eceSKris Buschelman     }
1619a23d5eceSKris Buschelman   }
1620a23d5eceSKris Buschelman 
1621a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1622d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1623d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1624d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1625e32f2f54SBarry Smith     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1626a23d5eceSKris Buschelman   }
1627a23d5eceSKris Buschelman 
1628d0f46423SBarry Smith   B->rmap->bs  = bs;
1629a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1630a23d5eceSKris Buschelman   b->mbs = mbs;
1631a23d5eceSKris Buschelman   b->nbs = mbs;
1632a23d5eceSKris Buschelman   b->Mbs = Mbs;
1633a23d5eceSKris Buschelman   b->Nbs = Mbs;
1634a23d5eceSKris Buschelman 
1635a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1636d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1637a23d5eceSKris Buschelman   }
1638d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1639d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1640a23d5eceSKris Buschelman 
1641d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1642d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1643a23d5eceSKris Buschelman 
1644526dfc15SBarry Smith   if (!B->preallocated) {
1645f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1646d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16479c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
164852e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1649f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1650d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16514aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
165252e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
165315bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1654526dfc15SBarry Smith   }
1655a23d5eceSKris Buschelman 
1656526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1657526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1658526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1659a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1660a23d5eceSKris Buschelman }
1661a23d5eceSKris Buschelman EXTERN_C_END
1662a23d5eceSKris Buschelman 
16635c9eb25fSBarry Smith EXTERN_C_BEGIN
1664dfb205c3SBarry Smith #undef __FUNCT__
1665dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1666dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1667dfb205c3SBarry Smith {
1668dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1669dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1670dfb205c3SBarry Smith   const PetscInt *JJ=0;
1671dfb205c3SBarry Smith   PetscScalar    *values=0;
1672dfb205c3SBarry Smith   PetscErrorCode ierr;
1673dfb205c3SBarry Smith 
1674dfb205c3SBarry Smith   PetscFunctionBegin;
1675dfb205c3SBarry Smith 
1676dfb205c3SBarry Smith   if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1677dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1678dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1679dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1680dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1681dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1682dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1683dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1684dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1685dfb205c3SBarry Smith 
1686dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1687dfb205c3SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
1688dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1689dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1690dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1691dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1692dfb205c3SBarry Smith     JJ  = jj + ii[i];
1693dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1694dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1695dfb205c3SBarry Smith       JJ++;
1696dfb205c3SBarry Smith     }
1697dfb205c3SBarry Smith     d = 0;
1698dfb205c3SBarry Smith     for (; j<nz; j++) {
1699dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1700dfb205c3SBarry Smith       d++;
1701dfb205c3SBarry Smith     }
1702dfb205c3SBarry Smith     d_nnz[i] = d;
1703dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1704dfb205c3SBarry Smith   }
1705dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1706dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1707dfb205c3SBarry Smith 
1708dfb205c3SBarry Smith   values = (PetscScalar*)V;
1709dfb205c3SBarry Smith   if (!values) {
1710dfb205c3SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
1711dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1712dfb205c3SBarry Smith   }
1713dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1714dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1715dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1716dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1717dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1718dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1719dfb205c3SBarry Smith   }
1720dfb205c3SBarry Smith 
1721dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1722dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1723dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1724dfb205c3SBarry Smith 
1725dfb205c3SBarry Smith   PetscFunctionReturn(0);
1726dfb205c3SBarry Smith }
1727dfb205c3SBarry Smith EXTERN_C_END
1728dfb205c3SBarry Smith 
1729dfb205c3SBarry Smith EXTERN_C_BEGIN
1730611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1731bccb9932SShri Abhyankar extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1732611f576cSBarry Smith #endif
1733611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
17345c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1735611f576cSBarry Smith #endif
1736b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1737b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1738b5e56a35SBarry Smith #endif
17395c9eb25fSBarry Smith EXTERN_C_END
17405c9eb25fSBarry Smith 
17410bad9183SKris Buschelman /*MC
1742fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
17430bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
17440bad9183SKris Buschelman 
17450bad9183SKris Buschelman    Options Database Keys:
17460bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17470bad9183SKris Buschelman 
17480bad9183SKris Buschelman   Level: beginner
17490bad9183SKris Buschelman 
17500bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17510bad9183SKris Buschelman M*/
17520bad9183SKris Buschelman 
1753a23d5eceSKris Buschelman EXTERN_C_BEGIN
1754a23d5eceSKris Buschelman #undef __FUNCT__
17554a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1756be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1757b5df2d14SHong Zhang {
1758b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1759dfbe8321SBarry Smith   PetscErrorCode ierr;
1760ace3abfcSBarry Smith   PetscBool      flg;
1761b5df2d14SHong Zhang 
1762b5df2d14SHong Zhang   PetscFunctionBegin;
1763b5df2d14SHong Zhang 
176438f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1765b0a32e0cSBarry Smith   B->data = (void*)b;
1766b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1767b5df2d14SHong Zhang 
1768b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1769b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1770b5df2d14SHong Zhang   B->mapping         = 0;
1771b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1772b5df2d14SHong Zhang 
1773b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
17747adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17757adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1776b5df2d14SHong Zhang 
1777b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1778899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1779b5df2d14SHong Zhang 
1780b5df2d14SHong Zhang   /* build cache for off array entries formed */
17817adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1782b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1783b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1784b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1785b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1786b5df2d14SHong Zhang 
1787b5df2d14SHong Zhang   /* stuff used in block assembly */
1788b5df2d14SHong Zhang   b->barray       = 0;
1789b5df2d14SHong Zhang 
1790b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1791b5df2d14SHong Zhang   b->lvec         = 0;
1792b5df2d14SHong Zhang   b->Mvctx        = 0;
179340781036SHong Zhang   b->slvec0       = 0;
179440781036SHong Zhang   b->slvec0b      = 0;
179540781036SHong Zhang   b->slvec1       = 0;
179640781036SHong Zhang   b->slvec1a      = 0;
179740781036SHong Zhang   b->slvec1b      = 0;
179840781036SHong Zhang   b->sMvctx       = 0;
1799b5df2d14SHong Zhang 
1800b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1801b5df2d14SHong Zhang   b->rowindices   = 0;
1802b5df2d14SHong Zhang   b->rowvalues    = 0;
1803b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1804b5df2d14SHong Zhang 
1805b5df2d14SHong Zhang   /* hash table stuff */
1806b5df2d14SHong Zhang   b->ht           = 0;
1807b5df2d14SHong Zhang   b->hd           = 0;
1808b5df2d14SHong Zhang   b->ht_size      = 0;
1809b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1810b5df2d14SHong Zhang   b->ht_fact      = 0;
1811b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1812b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1813b5df2d14SHong Zhang 
181459ffdab8SBarry Smith   b->in_loc       = 0;
181559ffdab8SBarry Smith   b->v_loc        = 0;
181659ffdab8SBarry Smith   b->n_loc        = 0;
18177adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
1818*acfcf0e5SJed Brown     ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1819b5df2d14SHong Zhang     if (flg) {
1820f6275e2eSBarry Smith       PetscReal fact = 1.39;
18214e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
18228c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1823b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1824b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18251e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1826b5df2d14SHong Zhang     }
18278c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18288c07d4e3SBarry Smith 
1829b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1830ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1831b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1832b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1833b5e56a35SBarry Smith #endif
1834611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1835ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1836bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1837bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1838611f576cSBarry Smith #endif
1839611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1840ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
18415c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
18425c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1843611f576cSBarry Smith #endif
1844b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1845b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1846b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1847b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1848b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1849b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1850b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1851b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1852b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1853a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1854a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1855a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1856dfb205c3SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",
1857dfb205c3SBarry Smith                                      "MatMPISBAIJSetPreallocationCSR_MPISBAIJ",
1858dfb205c3SBarry Smith                                      MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
185923ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
186023ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
186123ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
186223ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
186317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1864b5df2d14SHong Zhang   PetscFunctionReturn(0);
1865b5df2d14SHong Zhang }
1866273d9f13SBarry Smith EXTERN_C_END
1867b5df2d14SHong Zhang 
1868209238afSKris Buschelman /*MC
1869002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1870209238afSKris Buschelman 
1871209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1872209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1873209238afSKris Buschelman 
1874209238afSKris Buschelman    Options Database Keys:
1875209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1876209238afSKris Buschelman 
1877209238afSKris Buschelman   Level: beginner
1878209238afSKris Buschelman 
1879209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1880209238afSKris Buschelman M*/
1881209238afSKris Buschelman 
1882209238afSKris Buschelman EXTERN_C_BEGIN
1883209238afSKris Buschelman #undef __FUNCT__
1884209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1885be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1886dfbe8321SBarry Smith {
18876849ba73SBarry Smith   PetscErrorCode ierr;
18881302d50aSBarry Smith   PetscMPIInt    size;
1889209238afSKris Buschelman 
1890209238afSKris Buschelman   PetscFunctionBegin;
18917adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1892209238afSKris Buschelman   if (size == 1) {
1893209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1894209238afSKris Buschelman   } else {
1895209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1896209238afSKris Buschelman   }
1897209238afSKris Buschelman   PetscFunctionReturn(0);
1898209238afSKris Buschelman }
1899209238afSKris Buschelman EXTERN_C_END
1900209238afSKris Buschelman 
19014a2ae208SSatish Balay #undef __FUNCT__
19024a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1903b5df2d14SHong Zhang /*@C
1904b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1905b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1906b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1907b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1908b5df2d14SHong Zhang 
1909b5df2d14SHong Zhang    Collective on Mat
1910b5df2d14SHong Zhang 
1911b5df2d14SHong Zhang    Input Parameters:
1912b5df2d14SHong Zhang +  A - the matrix
1913b5df2d14SHong Zhang .  bs   - size of blockk
1914b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1915b5df2d14SHong Zhang            submatrix  (same for all local rows)
1916b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
19176d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
19186d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
19196d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1920b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1921b5df2d14SHong Zhang            submatrix (same for all local rows).
1922b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1923b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1924b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1925b5df2d14SHong Zhang 
1926b5df2d14SHong Zhang 
1927b5df2d14SHong Zhang    Options Database Keys:
1928b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1929b5df2d14SHong Zhang                      block calculations (much slower)
1930b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1931b5df2d14SHong Zhang 
1932b5df2d14SHong Zhang    Notes:
1933b5df2d14SHong Zhang 
1934b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1935b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1936b5df2d14SHong Zhang 
193749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
193849a6f317SBarry Smith 
1939b5df2d14SHong Zhang    Storage Information:
1940b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1941b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1942b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1943b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1944b5df2d14SHong Zhang 
1945b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1946b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1947b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1948b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1949b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1950b5df2d14SHong Zhang 
1951aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1952aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1953aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1954aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1955aa95bbe8SBarry Smith 
1956b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1957b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1958b5df2d14SHong Zhang 
1959b5df2d14SHong Zhang .vb
1960b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1961b5df2d14SHong Zhang           -------------------
1962b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1963b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1964b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1965b5df2d14SHong Zhang           -------------------
1966b5df2d14SHong Zhang .ve
1967b5df2d14SHong Zhang 
1968b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1969b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19706d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19716d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1972b5df2d14SHong Zhang 
19736d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19746d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1975b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1976b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1977b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1978b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1979b5df2d14SHong Zhang    matrices.
1980b5df2d14SHong Zhang 
1981b5df2d14SHong Zhang    Level: intermediate
1982b5df2d14SHong Zhang 
1983b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1984b5df2d14SHong Zhang 
1985b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1986b5df2d14SHong Zhang @*/
1987be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1988b5df2d14SHong Zhang {
19894ac538c5SBarry Smith   PetscErrorCode ierr;
1990b5df2d14SHong Zhang 
1991b5df2d14SHong Zhang   PetscFunctionBegin;
19924ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1993b5df2d14SHong Zhang   PetscFunctionReturn(0);
1994b5df2d14SHong Zhang }
1995b5df2d14SHong Zhang 
19964a2ae208SSatish Balay #undef __FUNCT__
19974a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1998a30f8f8cSSatish Balay /*@C
1999a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2000a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2001a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2002a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2003a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2004a30f8f8cSSatish Balay 
2005a30f8f8cSSatish Balay    Collective on MPI_Comm
2006a30f8f8cSSatish Balay 
2007a30f8f8cSSatish Balay    Input Parameters:
2008a30f8f8cSSatish Balay +  comm - MPI communicator
2009a30f8f8cSSatish Balay .  bs   - size of blockk
2010a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2011a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2012a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2013a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2014a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2015a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2016a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2017a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2018a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2019a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2020a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
20216d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
20226d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
20236d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
2024a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2025a30f8f8cSSatish Balay            submatrix (same for all local rows).
2026a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2027a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
2028a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
2029a30f8f8cSSatish Balay 
2030a30f8f8cSSatish Balay    Output Parameter:
2031a30f8f8cSSatish Balay .  A - the matrix
2032a30f8f8cSSatish Balay 
2033a30f8f8cSSatish Balay    Options Database Keys:
2034a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2035a30f8f8cSSatish Balay                      block calculations (much slower)
2036a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2037a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2038a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2039a30f8f8cSSatish Balay 
2040175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2041ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2042175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2043175b88e8SBarry Smith 
2044a30f8f8cSSatish Balay    Notes:
2045d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20466d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2047d1be2dadSMatthew Knepley 
2048a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2049a30f8f8cSSatish Balay    (possibly both).
2050a30f8f8cSSatish Balay 
2051a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2052a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2053a30f8f8cSSatish Balay 
205449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
205549a6f317SBarry Smith 
2056a30f8f8cSSatish Balay    Storage Information:
2057a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2058a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2059a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2060a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2061a30f8f8cSSatish Balay 
2062a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2063a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
2064a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2065a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2066a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2067a30f8f8cSSatish Balay 
2068a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2069a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2070a30f8f8cSSatish Balay 
2071a30f8f8cSSatish Balay .vb
2072a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2073a30f8f8cSSatish Balay           -------------------
2074a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2075a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2076a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2077a30f8f8cSSatish Balay           -------------------
2078a30f8f8cSSatish Balay .ve
2079a30f8f8cSSatish Balay 
2080a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2081a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20826d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20836d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2084a30f8f8cSSatish Balay 
20856d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20866d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2087a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2088a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2089a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2090a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2091a30f8f8cSSatish Balay    matrices.
2092a30f8f8cSSatish Balay 
2093a30f8f8cSSatish Balay    Level: intermediate
2094a30f8f8cSSatish Balay 
2095a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2096a30f8f8cSSatish Balay 
2097a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2098a30f8f8cSSatish Balay @*/
2099a30f8f8cSSatish Balay 
2100be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2101a30f8f8cSSatish Balay {
21026849ba73SBarry Smith   PetscErrorCode ierr;
21031302d50aSBarry Smith   PetscMPIInt    size;
2104a30f8f8cSSatish Balay 
2105a30f8f8cSSatish Balay   PetscFunctionBegin;
2106f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2107f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2108273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2109273d9f13SBarry Smith   if (size > 1) {
2110b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2111b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2112273d9f13SBarry Smith   } else {
2113273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2114273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2115273d9f13SBarry Smith   }
2116a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2117a30f8f8cSSatish Balay }
2118a30f8f8cSSatish Balay 
2119a30f8f8cSSatish Balay 
21204a2ae208SSatish Balay #undef __FUNCT__
21214a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
21226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2123a30f8f8cSSatish Balay {
2124a30f8f8cSSatish Balay   Mat            mat;
2125a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2126dfbe8321SBarry Smith   PetscErrorCode ierr;
2127d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2128387bc808SHong Zhang   PetscScalar    *array;
2129a30f8f8cSSatish Balay 
2130a30f8f8cSSatish Balay   PetscFunctionBegin;
2131a30f8f8cSSatish Balay   *newmat       = 0;
21327adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2133d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21347adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21351d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
213626283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
213726283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2138e1b6402fSHong Zhang 
2139d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2140273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
214182327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21427fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21437fff6886SHong Zhang 
2144b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2145a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2146a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2147a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2148a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2149a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2150a30f8f8cSSatish Balay 
2151899cda47SBarry Smith 
2152a30f8f8cSSatish Balay   a->size         = oldmat->size;
2153a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2154a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2155a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2156a30f8f8cSSatish Balay   a->rowindices   = 0;
2157a30f8f8cSSatish Balay   a->rowvalues    = 0;
2158a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2159a30f8f8cSSatish Balay   a->barray       = 0;
2160899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2161899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2162899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2163899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2164a30f8f8cSSatish Balay 
2165a30f8f8cSSatish Balay   /* hash table stuff */
2166a30f8f8cSSatish Balay   a->ht           = 0;
2167a30f8f8cSSatish Balay   a->hd           = 0;
2168a30f8f8cSSatish Balay   a->ht_size      = 0;
2169a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2170a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2171a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2172a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2173a30f8f8cSSatish Balay 
2174899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2175a30f8f8cSSatish Balay   if (oldmat->colmap) {
2176a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2177a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2178a30f8f8cSSatish Balay #else
21791302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
218052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21811302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2182a30f8f8cSSatish Balay #endif
2183a30f8f8cSSatish Balay   } else a->colmap = 0;
2184387bc808SHong Zhang 
2185a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21861302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
218752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21881302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   } else a->garray = 0;
2190a30f8f8cSSatish Balay 
2191533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2192a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
219352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
219552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
219682327fa8SHong Zhang 
219782327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
219852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
219982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
220052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2201387bc808SHong Zhang 
2202387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
22031ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2204387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2205387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
22061ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
22071ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2208387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
22091ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
221052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
221152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
221252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
221352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
221452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2215387bc808SHong Zhang 
2216387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2217387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2218387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
221952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
222082327fa8SHong Zhang 
2221a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
222252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
222452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
22257adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2226a30f8f8cSSatish Balay   *newmat = mat;
2227a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2228a30f8f8cSSatish Balay }
2229a30f8f8cSSatish Balay 
22304a2ae208SSatish Balay #undef __FUNCT__
22315bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2232112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
223395936485SShri Abhyankar {
223495936485SShri Abhyankar   PetscErrorCode ierr;
223595936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
223695936485SShri Abhyankar   PetscScalar    *vals,*buf;
223795936485SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
223895936485SShri Abhyankar   MPI_Status     status;
223995936485SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
224095936485SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
224195936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
224295936485SShri Abhyankar   PetscInt       bs=1,Mbs,mbs,extra_rows;
224395936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
224495936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
224595936485SShri Abhyankar   int            fd;
224695936485SShri Abhyankar 
224795936485SShri Abhyankar   PetscFunctionBegin;
224895936485SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
224995936485SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
225095936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
225195936485SShri Abhyankar 
225295936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
225395936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
225495936485SShri Abhyankar   if (!rank) {
225595936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
225695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
225795936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
225895936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
225995936485SShri Abhyankar   }
226095936485SShri Abhyankar 
226195936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
226295936485SShri Abhyankar 
226395936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
226495936485SShri Abhyankar   M = header[1]; N = header[2];
226595936485SShri Abhyankar 
226695936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
226795936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
226895936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
226995936485SShri Abhyankar 
227095936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
227195936485SShri Abhyankar   if (sizesset) {
227295936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
227395936485SShri Abhyankar   }
2274abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2275abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
227695936485SShri Abhyankar 
227795936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
227895936485SShri Abhyankar 
227995936485SShri Abhyankar   /*
228095936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
228195936485SShri Abhyankar      divisible by the blocksize
228295936485SShri Abhyankar   */
228395936485SShri Abhyankar   Mbs        = M/bs;
228495936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
228595936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
228695936485SShri Abhyankar   else                  Mbs++;
228795936485SShri Abhyankar   if (extra_rows &&!rank) {
228895936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
228995936485SShri Abhyankar   }
229095936485SShri Abhyankar 
229195936485SShri Abhyankar   /* determine ownership of all rows */
229295936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
229395936485SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
229495936485SShri Abhyankar     m          = mbs*bs;
229595936485SShri Abhyankar   } else { /* User Set */
229695936485SShri Abhyankar     m          = newmat->rmap->n;
229795936485SShri Abhyankar     mbs        = m/bs;
229895936485SShri Abhyankar   }
229995936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
230095936485SShri Abhyankar   mmbs       = PetscMPIIntCast(mbs);
230195936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
230295936485SShri Abhyankar   rowners[0] = 0;
230395936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
230495936485SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
230595936485SShri Abhyankar   rstart = rowners[rank];
230695936485SShri Abhyankar   rend   = rowners[rank+1];
230795936485SShri Abhyankar 
230895936485SShri Abhyankar   /* distribute row lengths to all processors */
230995936485SShri Abhyankar   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
231095936485SShri Abhyankar   if (!rank) {
231195936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
231295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
231395936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
231495936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
231595936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
231695936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
231795936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
231895936485SShri Abhyankar   } else {
231995936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
232095936485SShri Abhyankar   }
232195936485SShri Abhyankar 
232295936485SShri Abhyankar   if (!rank) {   /* procs[0] */
232395936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
232495936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
232595936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
232695936485SShri Abhyankar     for (i=0; i<size; i++) {
232795936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
232895936485SShri Abhyankar         procsnz[i] += rowlengths[j];
232995936485SShri Abhyankar       }
233095936485SShri Abhyankar     }
233195936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
233295936485SShri Abhyankar 
233395936485SShri Abhyankar     /* determine max buffer needed and allocate it */
233495936485SShri Abhyankar     maxnz = 0;
233595936485SShri Abhyankar     for (i=0; i<size; i++) {
233695936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
233795936485SShri Abhyankar     }
233895936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
233995936485SShri Abhyankar 
234095936485SShri Abhyankar     /* read in my part of the matrix column indices  */
234195936485SShri Abhyankar     nz     = procsnz[0];
234295936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
234395936485SShri Abhyankar     mycols = ibuf;
234495936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
234595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
234695936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
234795936485SShri Abhyankar 
234895936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
234995936485SShri Abhyankar     for (i=1; i<size-1; i++) {
235095936485SShri Abhyankar       nz   = procsnz[i];
235195936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
235295936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
235395936485SShri Abhyankar     }
235495936485SShri Abhyankar     /* read in the stuff for the last proc */
235595936485SShri Abhyankar     if (size != 1) {
235695936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
235795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
235895936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
235995936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
236095936485SShri Abhyankar     }
236195936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
236295936485SShri Abhyankar   } else {  /* procs[i], i>0 */
236395936485SShri Abhyankar     /* determine buffer space needed for message */
236495936485SShri Abhyankar     nz = 0;
236595936485SShri Abhyankar     for (i=0; i<m; i++) {
236695936485SShri Abhyankar       nz += locrowlens[i];
236795936485SShri Abhyankar     }
236895936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
236995936485SShri Abhyankar     mycols = ibuf;
237095936485SShri Abhyankar     /* receive message of column indices*/
237195936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
237295936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
237395936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
237495936485SShri Abhyankar   }
237595936485SShri Abhyankar 
237695936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
237795936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
237895936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
237995936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
238095936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
238195936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
238295936485SShri Abhyankar   rowcount = 0;
238395936485SShri Abhyankar   nzcount  = 0;
238495936485SShri Abhyankar   for (i=0; i<mbs; i++) {
238595936485SShri Abhyankar     dcount  = 0;
238695936485SShri Abhyankar     odcount = 0;
238795936485SShri Abhyankar     for (j=0; j<bs; j++) {
238895936485SShri Abhyankar       kmax = locrowlens[rowcount];
238995936485SShri Abhyankar       for (k=0; k<kmax; k++) {
239095936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
239195936485SShri Abhyankar         if (!mask[tmp]) {
239295936485SShri Abhyankar           mask[tmp] = 1;
239395936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
239495936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
239595936485SShri Abhyankar         }
239695936485SShri Abhyankar       }
239795936485SShri Abhyankar       rowcount++;
239895936485SShri Abhyankar     }
239995936485SShri Abhyankar 
240095936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
240195936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
240295936485SShri Abhyankar 
240395936485SShri Abhyankar     /* zero out the mask elements we set */
240495936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
240595936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
240695936485SShri Abhyankar   }
240795936485SShri Abhyankar     if (!sizesset) {
240895936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
240995936485SShri Abhyankar   }
241095936485SShri Abhyankar   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
241195936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
241295936485SShri Abhyankar 
241395936485SShri Abhyankar   if (!rank) {
241495936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
241595936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
241695936485SShri Abhyankar     nz = procsnz[0];
241795936485SShri Abhyankar     vals = buf;
241895936485SShri Abhyankar     mycols = ibuf;
241995936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
242095936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
242195936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
242295936485SShri Abhyankar 
242395936485SShri Abhyankar     /* insert into matrix */
242495936485SShri Abhyankar     jj      = rstart*bs;
242595936485SShri Abhyankar     for (i=0; i<m; i++) {
242695936485SShri Abhyankar       ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
242795936485SShri Abhyankar       mycols += locrowlens[i];
242895936485SShri Abhyankar       vals   += locrowlens[i];
242995936485SShri Abhyankar       jj++;
243095936485SShri Abhyankar     }
243195936485SShri Abhyankar 
243295936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
243395936485SShri Abhyankar     for (i=1; i<size-1; i++) {
243495936485SShri Abhyankar       nz   = procsnz[i];
243595936485SShri Abhyankar       vals = buf;
243695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
243795936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
243895936485SShri Abhyankar     }
243995936485SShri Abhyankar     /* the last proc */
244095936485SShri Abhyankar     if (size != 1){
244195936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
244295936485SShri Abhyankar       vals = buf;
244395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
244495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
244595936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
244695936485SShri Abhyankar     }
244795936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
244895936485SShri Abhyankar 
244995936485SShri Abhyankar   } else {
245095936485SShri Abhyankar     /* receive numeric values */
245195936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
245295936485SShri Abhyankar 
245395936485SShri Abhyankar     /* receive message of values*/
245495936485SShri Abhyankar     vals   = buf;
245595936485SShri Abhyankar     mycols = ibuf;
245695936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
245795936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
245895936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
245995936485SShri Abhyankar 
246095936485SShri Abhyankar     /* insert into matrix */
246195936485SShri Abhyankar     jj      = rstart*bs;
246295936485SShri Abhyankar     for (i=0; i<m; i++) {
246395936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
246495936485SShri Abhyankar       mycols += locrowlens[i];
246595936485SShri Abhyankar       vals   += locrowlens[i];
246695936485SShri Abhyankar       jj++;
246795936485SShri Abhyankar     }
246895936485SShri Abhyankar   }
246995936485SShri Abhyankar 
247095936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
247195936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
247295936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
247395936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
247495936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
247595936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
247695936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
247795936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
247895936485SShri Abhyankar   PetscFunctionReturn(0);
247995936485SShri Abhyankar }
248095936485SShri Abhyankar 
248195936485SShri Abhyankar #undef __FUNCT__
24824a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2483dcf5cc72SBarry Smith /*XXXXX@
2484a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2485a30f8f8cSSatish Balay 
2486a30f8f8cSSatish Balay    Input Parameters:
2487a30f8f8cSSatish Balay .  mat  - the matrix
2488a30f8f8cSSatish Balay .  fact - factor
2489a30f8f8cSSatish Balay 
2490c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2491a30f8f8cSSatish Balay 
2492a30f8f8cSSatish Balay    Level: advanced
2493a30f8f8cSSatish Balay 
2494a30f8f8cSSatish Balay   Notes:
2495a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2496a30f8f8cSSatish Balay 
2497a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2498a30f8f8cSSatish Balay 
2499a30f8f8cSSatish Balay .seealso: MatSetOption()
2500dcf5cc72SBarry Smith @XXXXX*/
2501dcf5cc72SBarry Smith 
250224d5174aSHong Zhang 
25034a2ae208SSatish Balay #undef __FUNCT__
2504985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2505985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
250624d5174aSHong Zhang {
250724d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2508f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2509ca54ac64SHong Zhang   PetscReal      atmp;
251087828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2511dfbe8321SBarry Smith   PetscErrorCode ierr;
25121302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25131302d50aSBarry Smith   PetscMPIInt    rank,size;
25141302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
251587828ca2SBarry Smith   PetscScalar    *va;
25168a1c53f2SBarry Smith   MatScalar      *ba;
2517f4c0e9e4SHong Zhang   MPI_Status     stat;
251824d5174aSHong Zhang 
251924d5174aSHong Zhang   PetscFunctionBegin;
2520e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2521985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
25221ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2523f4c0e9e4SHong Zhang 
25247adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
25257adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2526f4c0e9e4SHong Zhang 
2527d0f46423SBarry Smith   bs   = A->rmap->bs;
2528f4c0e9e4SHong Zhang   mbs  = a->mbs;
2529f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2530f4c0e9e4SHong Zhang   ba   = b->a;
2531f4c0e9e4SHong Zhang   bi   = b->i;
2532f4c0e9e4SHong Zhang   bj   = b->j;
2533f4c0e9e4SHong Zhang 
2534f4c0e9e4SHong Zhang   /* find ownerships */
2535d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2536f4c0e9e4SHong Zhang 
2537f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
253882502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2539ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2540f4c0e9e4SHong Zhang 
2541f4c0e9e4SHong Zhang   /* row_max for B */
2542b8475685SHong Zhang   if (rank != size-1){
2543f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2544f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2545f4c0e9e4SHong Zhang       brow  = bs*i;
2546f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2547f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2548f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2549ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
255004d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2551f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2552f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2553ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2554ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2555f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2556f4c0e9e4SHong Zhang           }
2557f4c0e9e4SHong Zhang         }
2558f4c0e9e4SHong Zhang         bj++;
2559f4c0e9e4SHong Zhang       }
2560f4c0e9e4SHong Zhang     }
2561f4c0e9e4SHong Zhang 
2562f4c0e9e4SHong Zhang     /* send values to its owners */
2563f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2564f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2565ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
25667adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2567ca54ac64SHong Zhang     }
2568f4c0e9e4SHong Zhang   }
2569f4c0e9e4SHong Zhang 
2570f4c0e9e4SHong Zhang   /* receive values */
2571ca54ac64SHong Zhang   if (rank){
2572f4c0e9e4SHong Zhang     rvalues = work;
2573ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2574f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
25757adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2576f4c0e9e4SHong Zhang       /* process values */
2577f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2578ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2579f4c0e9e4SHong Zhang       }
2580f4c0e9e4SHong Zhang     }
2581ca54ac64SHong Zhang   }
2582f4c0e9e4SHong Zhang 
25831ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2584ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
258524d5174aSHong Zhang   PetscFunctionReturn(0);
258624d5174aSHong Zhang }
25872798e883SHong Zhang 
25882798e883SHong Zhang #undef __FUNCT__
258941f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
259041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25912798e883SHong Zhang {
25922798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2593dfbe8321SBarry Smith   PetscErrorCode    ierr;
2594d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25953649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2596ffe4fb16SHong Zhang   Vec               bb1;
25973649974fSBarry Smith   const PetscScalar *b;
2598ffe4fb16SHong Zhang 
2599ffe4fb16SHong Zhang   PetscFunctionBegin;
2600e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2601e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2602ffe4fb16SHong Zhang 
2603a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
260441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2605a2b30743SBarry Smith     PetscFunctionReturn(0);
2606a2b30743SBarry Smith   }
2607a2b30743SBarry Smith 
2608ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2609ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
261041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2611ffe4fb16SHong Zhang       its--;
2612ffe4fb16SHong Zhang     }
2613ffe4fb16SHong Zhang 
2614ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2615ffe4fb16SHong Zhang     while (its--){
2616ffe4fb16SHong Zhang 
2617ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2618ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2619ffe4fb16SHong Zhang 
2620ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26211ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26221ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2623ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26241ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2625ffe4fb16SHong Zhang 
2626efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2627ffe4fb16SHong Zhang 
2628ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26291ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26303649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2631ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26321ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2633ffe4fb16SHong Zhang 
2634ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2635fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2636ffe4fb16SHong Zhang 
2637ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26381ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2639a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2640ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2641ffe4fb16SHong Zhang 
2642ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2643ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2644ffe4fb16SHong Zhang 
2645ffe4fb16SHong Zhang       /* local diagonal sweep */
264641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2647ffe4fb16SHong Zhang     }
2648ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2649fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
265041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2651fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
265241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2653fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2654fa22f6d0SBarry Smith     Vec               xx1;
2655ace3abfcSBarry Smith     PetscBool         hasop;
265620f1ed55SBarry Smith     const PetscScalar *diag;
2657887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
265820f1ed55SBarry Smith     PetscInt          i,n;
2659fa22f6d0SBarry Smith 
2660fa22f6d0SBarry Smith     if (!mat->xx1) {
2661fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2662fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2663fa22f6d0SBarry Smith     }
2664fa22f6d0SBarry Smith     xx1 = mat->xx1;
2665fa22f6d0SBarry Smith     bb1 = mat->bb1;
2666fa22f6d0SBarry Smith 
266741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2668fa22f6d0SBarry Smith 
2669fa22f6d0SBarry Smith     if (!mat->diag) {
2670effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2671fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2672fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2673fa22f6d0SBarry Smith     }
2674fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2675fa22f6d0SBarry Smith 
2676fa22f6d0SBarry Smith     if (hasop) {
2677fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2678887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
267920f1ed55SBarry Smith     } else {
268020f1ed55SBarry Smith       /*
268120f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
268220f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2683887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
268420f1ed55SBarry Smith       */
268520f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26863649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26873649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
268820f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
268920f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2690887ee2caSBarry Smith       if (omega == 1.0) {
269120f1ed55SBarry Smith 	for (i=0; i<n; i++) {
269220f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
269320f1ed55SBarry Smith 	}
269420f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2695887ee2caSBarry Smith       } else {
2696887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2697887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2698887ee2caSBarry Smith 	}
2699887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2700887ee2caSBarry Smith       }
270120f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27023649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27033649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
270420f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
270520f1ed55SBarry Smith     }
2706fa22f6d0SBarry Smith 
2707fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2708fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2709fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2710fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2711fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2712fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2713fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2714fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2715fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2716fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2717effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2718fa22f6d0SBarry Smith 
2719fa22f6d0SBarry Smith     /* local sweep */
272041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2721fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2722ffe4fb16SHong Zhang   } else {
2723e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2724ffe4fb16SHong Zhang   }
2725ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2726ffe4fb16SHong Zhang }
2727ffe4fb16SHong Zhang 
2728ffe4fb16SHong Zhang #undef __FUNCT__
272941f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
273041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2731ffe4fb16SHong Zhang {
2732ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2733dfbe8321SBarry Smith   PetscErrorCode ierr;
27342798e883SHong Zhang   Vec            lvec1,bb1;
27352798e883SHong Zhang 
27362798e883SHong Zhang   PetscFunctionBegin;
2737e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2738e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27392798e883SHong Zhang 
2740c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
27412798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
274241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27432798e883SHong Zhang       its--;
27442798e883SHong Zhang     }
27452798e883SHong Zhang 
27462798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27472798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27482798e883SHong Zhang     while (its--){
2749ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27502798e883SHong Zhang 
27512798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27522798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2753efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27542798e883SHong Zhang 
2755ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27562798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2757ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27582798e883SHong Zhang 
27592798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2760efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27612798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27622798e883SHong Zhang 
2763ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27642798e883SHong Zhang 
2765c14dc6b6SHong Zhang       /* diagonal sweep */
276641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27672798e883SHong Zhang     }
27682798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
27692798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2770c14dc6b6SHong Zhang   } else {
2771e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2772c14dc6b6SHong Zhang   }
27732798e883SHong Zhang   PetscFunctionReturn(0);
27742798e883SHong Zhang }
27752798e883SHong Zhang 
2776dfb205c3SBarry Smith #undef __FUNCT__
2777dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2778dfb205c3SBarry Smith /*@
2779dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2780dfb205c3SBarry Smith          CSR format the local rows.
2781dfb205c3SBarry Smith 
2782dfb205c3SBarry Smith    Collective on MPI_Comm
2783dfb205c3SBarry Smith 
2784dfb205c3SBarry Smith    Input Parameters:
2785dfb205c3SBarry Smith +  comm - MPI communicator
2786dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2787dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2788dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2789dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2790dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2791dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2792dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2793dfb205c3SBarry Smith .   i - row indices
2794dfb205c3SBarry Smith .   j - column indices
2795dfb205c3SBarry Smith -   a - matrix values
2796dfb205c3SBarry Smith 
2797dfb205c3SBarry Smith    Output Parameter:
2798dfb205c3SBarry Smith .   mat - the matrix
2799dfb205c3SBarry Smith 
2800dfb205c3SBarry Smith    Level: intermediate
2801dfb205c3SBarry Smith 
2802dfb205c3SBarry Smith    Notes:
2803dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2804dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2805dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2806dfb205c3SBarry Smith 
2807dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2808dfb205c3SBarry Smith 
2809dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2810dfb205c3SBarry Smith 
2811dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
2812dfb205c3SBarry Smith           MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithSplitArrays()
2813dfb205c3SBarry Smith @*/
2814dfb205c3SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2815dfb205c3SBarry Smith {
2816dfb205c3SBarry Smith   PetscErrorCode ierr;
2817dfb205c3SBarry Smith 
2818dfb205c3SBarry Smith 
2819dfb205c3SBarry Smith  PetscFunctionBegin;
2820dfb205c3SBarry Smith   if (i[0]) {
2821dfb205c3SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2822dfb205c3SBarry Smith   }
2823dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2824dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2825dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2826dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2827dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2828dfb205c3SBarry Smith   PetscFunctionReturn(0);
2829dfb205c3SBarry Smith }
2830dfb205c3SBarry Smith 
2831dfb205c3SBarry Smith 
2832dfb205c3SBarry Smith #undef __FUNCT__
2833dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2834dfb205c3SBarry Smith /*@C
2835dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2836dfb205c3SBarry Smith    (the default parallel PETSc format).
2837dfb205c3SBarry Smith 
2838dfb205c3SBarry Smith    Collective on MPI_Comm
2839dfb205c3SBarry Smith 
2840dfb205c3SBarry Smith    Input Parameters:
2841dfb205c3SBarry Smith +  A - the matrix
2842dfb205c3SBarry Smith .  bs - the block size
2843dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2844dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2845dfb205c3SBarry Smith -  v - optional values in the matrix
2846dfb205c3SBarry Smith 
2847dfb205c3SBarry Smith    Level: developer
2848dfb205c3SBarry Smith 
2849dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2850dfb205c3SBarry Smith 
2851dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2852dfb205c3SBarry Smith @*/
2853dfb205c3SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2854dfb205c3SBarry Smith {
28554ac538c5SBarry Smith   PetscErrorCode ierr;
2856dfb205c3SBarry Smith 
2857dfb205c3SBarry Smith   PetscFunctionBegin;
28584ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2859dfb205c3SBarry Smith   PetscFunctionReturn(0);
2860dfb205c3SBarry Smith }
2861dfb205c3SBarry Smith 
2862dfb205c3SBarry Smith 
2863