1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \ 104a30f8f8cSSatish Balay N = nrow++ - 1; \ 105a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 106a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 107a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 108a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 111a30f8f8cSSatish Balay rp[_i] = bcol; \ 112a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 113a30f8f8cSSatish Balay a_noinsert:; \ 114a30f8f8cSSatish Balay ailen[brow] = nrow; \ 115a30f8f8cSSatish Balay } 116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 117a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 118a30f8f8cSSatish Balay { \ 119a30f8f8cSSatish Balay brow = row/bs; \ 120a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 121a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 122a30f8f8cSSatish Balay bcol = col/bs; \ 123a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 124a30f8f8cSSatish Balay low = 0; high = nrow; \ 125a30f8f8cSSatish Balay while (high-low > 3) { \ 126a30f8f8cSSatish Balay t = (low+high)/2; \ 127a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 128a30f8f8cSSatish Balay else low = t; \ 129a30f8f8cSSatish Balay } \ 130a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 131a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 132a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 133a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 134a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 135a30f8f8cSSatish Balay else *bap = value; \ 136a30f8f8cSSatish Balay goto b_noinsert; \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay } \ 139a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 140085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 141ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay b_noinsert:; \ 152a30f8f8cSSatish Balay bilen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #endif 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 160a30f8f8cSSatish Balay { 161a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 162dfbe8321SBarry Smith PetscErrorCode ierr; 1631302d50aSBarry Smith PetscInt i,N = m*n; 164a30f8f8cSSatish Balay MatScalar *vsingle; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (N > b->setvalueslen) { 168a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 16982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 170a30f8f8cSSatish Balay b->setvalueslen = N; 171a30f8f8cSSatish Balay } 172a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 173a30f8f8cSSatish Balay 174a30f8f8cSSatish Balay for (i=0; i<N; i++) { 175a30f8f8cSSatish Balay vsingle[i] = v[i]; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 178a30f8f8cSSatish Balay PetscFunctionReturn(0); 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 1814a2ae208SSatish Balay #undef __FUNCT__ 1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 184a30f8f8cSSatish Balay { 185a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 186dfbe8321SBarry Smith PetscErrorCode ierr; 1871302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 188a30f8f8cSSatish Balay MatScalar *vsingle; 189a30f8f8cSSatish Balay 190a30f8f8cSSatish Balay PetscFunctionBegin; 191a30f8f8cSSatish Balay if (N > b->setvalueslen) { 192a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 19382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 194a30f8f8cSSatish Balay b->setvalueslen = N; 195a30f8f8cSSatish Balay } 196a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 197a30f8f8cSSatish Balay for (i=0; i<N; i++) { 198a30f8f8cSSatish Balay vsingle[i] = v[i]; 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 201a30f8f8cSSatish Balay PetscFunctionReturn(0); 202a30f8f8cSSatish Balay } 203a30f8f8cSSatish Balay #endif 204a30f8f8cSSatish Balay 205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 206a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 207a30f8f8cSSatish Balay */ 2084a2ae208SSatish Balay #undef __FUNCT__ 209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 211a30f8f8cSSatish Balay { 212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 213a30f8f8cSSatish Balay MatScalar value; 214b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 215dfbe8321SBarry Smith PetscErrorCode ierr; 2161302d50aSBarry Smith PetscInt i,j,row,col; 2171302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2181302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 219521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay /* Some Variables required in the macro */ 222a30f8f8cSSatish Balay Mat A = baij->A; 223a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2241302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 225a30f8f8cSSatish Balay MatScalar *aa=a->a; 226a30f8f8cSSatish Balay 227a30f8f8cSSatish Balay Mat B = baij->B; 228a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2291302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 230a30f8f8cSSatish Balay MatScalar *ba=b->a; 231a30f8f8cSSatish Balay 2321302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2331302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 234a30f8f8cSSatish Balay MatScalar *ap,*bap; 235a30f8f8cSSatish Balay 236a30f8f8cSSatish Balay /* for stash */ 2371302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 238f65c83cfSHong Zhang MatScalar *v_loc=0; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay if(!baij->donotstash){ 2431302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 24482502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay for (i=0; i<m; i++) { 248a30f8f8cSSatish Balay if (im[i] < 0) continue; 2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 25077431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 251a30f8f8cSSatish Balay #endif 252a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 253a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 254a30f8f8cSSatish Balay for (j=0; j<n; j++) { 25501b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 25601b2bd88SHong Zhang if (a->ignore_ltriangular){ 25701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 25801b2bd88SHong Zhang } else { 25901b2bd88SHong Zhang SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)"); 26001b2bd88SHong Zhang } 26101b2bd88SHong Zhang } 262a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 263a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 264a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 265a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 266a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 267a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 268a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 269a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 27177431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 272a30f8f8cSSatish Balay #endif 273a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 274a30f8f8cSSatish Balay if (mat->was_assembled) { 275a30f8f8cSSatish Balay if (!baij->colmap) { 276653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 279a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28071730473SSatish Balay col = col - 1; 281a30f8f8cSSatish Balay #else 28271730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 283a30f8f8cSSatish Balay #endif 284a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 285a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 286a30f8f8cSSatish Balay col = in[j]; 287a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 288a30f8f8cSSatish Balay B = baij->B; 289a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 290a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 291a30f8f8cSSatish Balay ba=b->a; 29271730473SSatish Balay } else col += in[j]%bs; 293a30f8f8cSSatish Balay } else col = in[j]; 294a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 295a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 296a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 297a30f8f8cSSatish Balay } 298a30f8f8cSSatish Balay } 299a30f8f8cSSatish Balay } else { /* off processor entry */ 300a30f8f8cSSatish Balay if (!baij->donotstash) { 301a30f8f8cSSatish Balay n_loc = 0; 302a30f8f8cSSatish Balay for (j=0; j<n; j++){ 303f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 304a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 305a30f8f8cSSatish Balay if (roworiented) { 306a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 307a30f8f8cSSatish Balay } else { 308a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 309a30f8f8cSSatish Balay } 310a30f8f8cSSatish Balay n_loc++; 311a30f8f8cSSatish Balay } 312a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 313a30f8f8cSSatish Balay } 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay if(!baij->donotstash){ 318a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 319a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay PetscFunctionReturn(0); 322a30f8f8cSSatish Balay } 323a30f8f8cSSatish Balay 3244a2ae208SSatish Balay #undef __FUNCT__ 325e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3261302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 327a30f8f8cSSatish Balay { 3280880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 329f15d580aSBarry Smith const MatScalar *value; 330f15d580aSBarry Smith MatScalar *barray=baij->barray; 3310880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 332dfbe8321SBarry Smith PetscErrorCode ierr; 3331302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 3341302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 335521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 3360880e062SHong Zhang 337a30f8f8cSSatish Balay PetscFunctionBegin; 3380880e062SHong Zhang if(!barray) { 3390880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3400880e062SHong Zhang baij->barray = barray; 3410880e062SHong Zhang } 3420880e062SHong Zhang 3430880e062SHong Zhang if (roworiented) { 3440880e062SHong Zhang stepval = (n-1)*bs; 3450880e062SHong Zhang } else { 3460880e062SHong Zhang stepval = (m-1)*bs; 3470880e062SHong Zhang } 3480880e062SHong Zhang for (i=0; i<m; i++) { 3490880e062SHong Zhang if (im[i] < 0) continue; 3502515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3520880e062SHong Zhang #endif 3530880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3540880e062SHong Zhang row = im[i] - rstart; 3550880e062SHong Zhang for (j=0; j<n; j++) { 3560880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3570880e062SHong Zhang if ((roworiented) && (n == 1)) { 358f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3590880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 360f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3610880e062SHong Zhang } else { /* Here a copy is required */ 3620880e062SHong Zhang if (roworiented) { 3630880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3640880e062SHong Zhang } else { 3650880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3660880e062SHong Zhang } 3670880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3680880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3690880e062SHong Zhang *barray++ = *value++; 3700880e062SHong Zhang } 3710880e062SHong Zhang } 3720880e062SHong Zhang barray -=bs2; 3730880e062SHong Zhang } 3740880e062SHong Zhang 3750880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3760880e062SHong Zhang col = in[j] - cstart; 3770880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3780880e062SHong Zhang } 3790880e062SHong Zhang else if (in[j] < 0) continue; 3802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3820880e062SHong Zhang #endif 3830880e062SHong Zhang else { 3840880e062SHong Zhang if (mat->was_assembled) { 3850880e062SHong Zhang if (!baij->colmap) { 386653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3870880e062SHong Zhang } 3880880e062SHong Zhang 3892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3900880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3911302d50aSBarry Smith { PetscInt data; 3920880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3930880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3940880e062SHong Zhang } 3950880e062SHong Zhang #else 3960880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3970880e062SHong Zhang #endif 3980880e062SHong Zhang #endif 3990880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4000880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4010880e062SHong Zhang col = (col - 1)/bs; 4020880e062SHong Zhang #else 4030880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4040880e062SHong Zhang #endif 4050880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4060880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4070880e062SHong Zhang col = in[j]; 4080880e062SHong Zhang } 4090880e062SHong Zhang } 4100880e062SHong Zhang else col = in[j]; 411e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4120880e062SHong Zhang } 4130880e062SHong Zhang } 4140880e062SHong Zhang } else { 4150880e062SHong Zhang if (!baij->donotstash) { 4160880e062SHong Zhang if (roworiented) { 4170880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4180880e062SHong Zhang } else { 4190880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4200880e062SHong Zhang } 4210880e062SHong Zhang } 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang PetscFunctionReturn(0); 425a30f8f8cSSatish Balay } 426a30f8f8cSSatish Balay 4274a2ae208SSatish Balay #undef __FUNCT__ 4284a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4291302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 430a30f8f8cSSatish Balay { 431f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4326849ba73SBarry Smith PetscErrorCode ierr; 433521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 4341302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 435a30f8f8cSSatish Balay 436a30f8f8cSSatish Balay PetscFunctionBegin; 437a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43877431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 43977431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 440a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 441a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 442a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44377431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 44477431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 445a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 446a30f8f8cSSatish Balay col = idxn[j] - bscstart; 447c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 448a30f8f8cSSatish Balay } else { 449a30f8f8cSSatish Balay if (!baij->colmap) { 450653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 451a30f8f8cSSatish Balay } 452a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 453a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 454a30f8f8cSSatish Balay data --; 455a30f8f8cSSatish Balay #else 456a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 457a30f8f8cSSatish Balay #endif 458a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 459a30f8f8cSSatish Balay else { 460a30f8f8cSSatish Balay col = data + idxn[j]%bs; 461e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 462a30f8f8cSSatish Balay } 463a30f8f8cSSatish Balay } 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } else { 46629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 467a30f8f8cSSatish Balay } 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay PetscFunctionReturn(0); 470a30f8f8cSSatish Balay } 471a30f8f8cSSatish Balay 4724a2ae208SSatish Balay #undef __FUNCT__ 4734a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 474dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 475a30f8f8cSSatish Balay { 476a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 477dfbe8321SBarry Smith PetscErrorCode ierr; 478a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 479a30f8f8cSSatish Balay 480a30f8f8cSSatish Balay PetscFunctionBegin; 481a30f8f8cSSatish Balay if (baij->size == 1) { 482a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 483a30f8f8cSSatish Balay } else { 484a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 485f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 486a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 487a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 488a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 489a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 490d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 491a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 492a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4930b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4940b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4950b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4960b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 4970b8dc8d2SHong Zhang PetscInt *jj,*garray=baij->garray,rstart=baij->rstart,nz; 4980b8dc8d2SHong Zhang PetscInt brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs; 4990b8dc8d2SHong Zhang MatScalar *v; 5000b8dc8d2SHong Zhang 5010b8dc8d2SHong Zhang ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 5020b8dc8d2SHong Zhang rsum2 = rsum + mat->N; 5030b8dc8d2SHong Zhang ierr = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 5040b8dc8d2SHong Zhang /* Amat */ 5050b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5060b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5070b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5080b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5090b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5100b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5110b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5120b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5130b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5140b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5150b8dc8d2SHong Zhang /* non-diagonal block */ 5160b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5170b8dc8d2SHong Zhang } 5180b8dc8d2SHong Zhang } 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang /* Bmat */ 5220b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5230b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5240b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5250b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5260b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5270b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5280b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5290b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5300b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5310b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5320b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5330b8dc8d2SHong Zhang } 5340b8dc8d2SHong Zhang } 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5380b8dc8d2SHong Zhang *norm = 0.0; 5390b8dc8d2SHong Zhang for (col=0; col<mat->N; col++) { 5400b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5410b8dc8d2SHong Zhang } 5420b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 543a30f8f8cSSatish Balay } else { 54429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 545a30f8f8cSSatish Balay } 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay PetscFunctionReturn(0); 548a30f8f8cSSatish Balay } 549a30f8f8cSSatish Balay 5504a2ae208SSatish Balay #undef __FUNCT__ 5514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 552dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 553a30f8f8cSSatish Balay { 554a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 555dfbe8321SBarry Smith PetscErrorCode ierr; 5561302d50aSBarry Smith PetscInt nstash,reallocs; 557a30f8f8cSSatish Balay InsertMode addv; 558a30f8f8cSSatish Balay 559a30f8f8cSSatish Balay PetscFunctionBegin; 560a30f8f8cSSatish Balay if (baij->donotstash) { 561a30f8f8cSSatish Balay PetscFunctionReturn(0); 562a30f8f8cSSatish Balay } 563a30f8f8cSSatish Balay 564a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 565a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 566a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 570a30f8f8cSSatish Balay 571a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 572a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 573a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 574*ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 575a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 576*ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 577a30f8f8cSSatish Balay PetscFunctionReturn(0); 578a30f8f8cSSatish Balay } 579a30f8f8cSSatish Balay 5804a2ae208SSatish Balay #undef __FUNCT__ 5814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 582dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 583a30f8f8cSSatish Balay { 584a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 585a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 586a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 5876849ba73SBarry Smith PetscErrorCode ierr; 58813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5891302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 59013f74950SBarry Smith PetscMPIInt n; 591a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 592a30f8f8cSSatish Balay MatScalar *val; 593a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 594a30f8f8cSSatish Balay 595a30f8f8cSSatish Balay PetscFunctionBegin; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay if (!baij->donotstash) { 598a30f8f8cSSatish Balay while (1) { 599a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 600a30f8f8cSSatish Balay if (!flg) break; 601a30f8f8cSSatish Balay 602a30f8f8cSSatish Balay for (i=0; i<n;) { 603a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 604a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 605a30f8f8cSSatish Balay if (j < n) ncols = j-i; 606a30f8f8cSSatish Balay else ncols = n-i; 607a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 608a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 609a30f8f8cSSatish Balay i = j; 610a30f8f8cSSatish Balay } 611a30f8f8cSSatish Balay } 612a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 613a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 614a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 615a30f8f8cSSatish Balay restore the original flags */ 616a30f8f8cSSatish Balay r1 = baij->roworiented; 617a30f8f8cSSatish Balay r2 = a->roworiented; 618a30f8f8cSSatish Balay r3 = b->roworiented; 619a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 620a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 621a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 622a30f8f8cSSatish Balay while (1) { 623a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 624a30f8f8cSSatish Balay if (!flg) break; 625a30f8f8cSSatish Balay 626a30f8f8cSSatish Balay for (i=0; i<n;) { 627a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 628a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 629a30f8f8cSSatish Balay if (j < n) ncols = j-i; 630a30f8f8cSSatish Balay else ncols = n-i; 631a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 632a30f8f8cSSatish Balay i = j; 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay } 635a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 636a30f8f8cSSatish Balay baij->roworiented = r1; 637a30f8f8cSSatish Balay a->roworiented = r2; 638a30f8f8cSSatish Balay b->roworiented = r3; 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay 641a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 642a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 643a30f8f8cSSatish Balay 644a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 645a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 646a30f8f8cSSatish Balay /* 647a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 648a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 649a30f8f8cSSatish Balay */ 650a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 651a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 652a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 653c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 654a30f8f8cSSatish Balay } 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65840781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 659a30f8f8cSSatish Balay } 6604eb6d288SHong Zhang b->compressedrow.use = PETSC_TRUE; 661a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 662a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 663a30f8f8cSSatish Balay 664a30f8f8cSSatish Balay if (baij->rowvalues) { 665a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 666a30f8f8cSSatish Balay baij->rowvalues = 0; 667a30f8f8cSSatish Balay } 6685222a1afSHong Zhang 669a30f8f8cSSatish Balay PetscFunctionReturn(0); 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay 6724a2ae208SSatish Balay #undef __FUNCT__ 6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678521d7252SBarry Smith PetscInt bs = mat->bs; 6791302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68032077d6dSBarry Smith PetscTruth iascii,isdraw; 681b0a32e0cSBarry Smith PetscViewer sviewer; 682f3ef73ceSBarry Smith PetscViewerFormat format; 683a30f8f8cSSatish Balay 684a30f8f8cSSatish Balay PetscFunctionBegin; 68532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 686fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68732077d6dSBarry Smith if (iascii) { 688b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 690a30f8f8cSSatish Balay MatInfo info; 691a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 69477431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 695521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 701a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 702a30f8f8cSSatish Balay PetscFunctionReturn(0); 703fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 705a30f8f8cSSatish Balay PetscFunctionReturn(0); 706c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 707c1490034SHong Zhang PetscFunctionReturn(0); 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay 711a30f8f8cSSatish Balay if (isdraw) { 712b0a32e0cSBarry Smith PetscDraw draw; 713a30f8f8cSSatish Balay PetscTruth isnull; 714b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay 718a30f8f8cSSatish Balay if (size == 1) { 719e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay } else { 722a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 723a30f8f8cSSatish Balay Mat A; 72465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7261302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 727a30f8f8cSSatish Balay MatScalar *a; 728a30f8f8cSSatish Balay 729f204ca49SKris Buschelman /* Should this be the same type as mat? */ 730f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 731a30f8f8cSSatish Balay if (!rank) { 732f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 733a30f8f8cSSatish Balay } else { 734f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 735a30f8f8cSSatish Balay } 736f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 737521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 739a30f8f8cSSatish Balay 740a30f8f8cSSatish Balay /* copy over the A part */ 74165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 742a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7431302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 746a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 747a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 748a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 749a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 750a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 751a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 752a30f8f8cSSatish Balay col++; a += bs; 753a30f8f8cSSatish Balay } 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay /* copy over the B part */ 75765d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75865d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 759a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 760a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 761a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 762a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 763a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 764a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 765a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 766a30f8f8cSSatish Balay col++; a += bs; 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 771a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 773a30f8f8cSSatish Balay /* 774a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 775b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 776a30f8f8cSSatish Balay */ 777b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77865d70643SHong Zhang if (!rank) { 779e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 780a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 781a30f8f8cSSatish Balay } 782b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 783a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay PetscFunctionReturn(0); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay 7884a2ae208SSatish Balay #undef __FUNCT__ 7894a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 790dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 791a30f8f8cSSatish Balay { 792dfbe8321SBarry Smith PetscErrorCode ierr; 79332077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 794a30f8f8cSSatish Balay 795a30f8f8cSSatish Balay PetscFunctionBegin; 79632077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 797fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 798b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 799fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80032077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 801a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 802a30f8f8cSSatish Balay } else { 8031302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 804a30f8f8cSSatish Balay } 805a30f8f8cSSatish Balay PetscFunctionReturn(0); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay 8084a2ae208SSatish Balay #undef __FUNCT__ 8094a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 810dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 811a30f8f8cSSatish Balay { 812a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 813dfbe8321SBarry Smith PetscErrorCode ierr; 814a30f8f8cSSatish Balay 815a30f8f8cSSatish Balay PetscFunctionBegin; 816a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 81777431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 818a30f8f8cSSatish Balay #endif 819a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 820a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 822a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 824a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 825a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 826a30f8f8cSSatish Balay #else 827a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 828a30f8f8cSSatish Balay #endif 829a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 830a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 831a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83240781036SHong Zhang if (baij->slvec0) { 83340781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83440781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83540781036SHong Zhang } 83640781036SHong Zhang if (baij->slvec1) { 83740781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83840781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83940781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 84040781036SHong Zhang } 84140781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 842a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 843a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 844a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 845a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 846a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 847a30f8f8cSSatish Balay #endif 848a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 849901853e0SKris Buschelman 850901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 851901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 852901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 853901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 854a30f8f8cSSatish Balay PetscFunctionReturn(0); 855a30f8f8cSSatish Balay } 856a30f8f8cSSatish Balay 8574a2ae208SSatish Balay #undef __FUNCT__ 858a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 859dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 860a9d4b620SHong Zhang { 861a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 862dfbe8321SBarry Smith PetscErrorCode ierr; 863521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 864a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 865a9d4b620SHong Zhang 866a9d4b620SHong Zhang PetscFunctionBegin; 867a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 868a9d4b620SHong Zhang if (nt != A->n) { 869a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 870a9d4b620SHong Zhang } 871a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 872a9d4b620SHong Zhang if (nt != A->m) { 873a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 874a9d4b620SHong Zhang } 875a9d4b620SHong Zhang 876a9d4b620SHong Zhang /* diagonal part */ 877a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8782dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 879a9d4b620SHong Zhang 880a9d4b620SHong Zhang /* subdiagonal part */ 881a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 882a9d4b620SHong Zhang 883a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8841ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8851ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 886a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8871ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 888a9d4b620SHong Zhang 889a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 8901ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 891a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 892a9d4b620SHong Zhang 893a9d4b620SHong Zhang /* supperdiagonal part */ 894a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 895a9d4b620SHong Zhang 896a9d4b620SHong Zhang PetscFunctionReturn(0); 897a9d4b620SHong Zhang } 898a9d4b620SHong Zhang 899a9d4b620SHong Zhang #undef __FUNCT__ 90040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 901dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 902a30f8f8cSSatish Balay { 903a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 904dfbe8321SBarry Smith PetscErrorCode ierr; 9051302d50aSBarry Smith PetscInt nt; 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay PetscFunctionBegin; 908a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 909b5df2d14SHong Zhang if (nt != A->n) { 91029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 911a30f8f8cSSatish Balay } 912a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 913b5df2d14SHong Zhang if (nt != A->m) { 91429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 915a30f8f8cSSatish Balay } 91665d70643SHong Zhang 917b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 918b941877fSHong Zhang /* do diagonal part */ 919b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 920b941877fSHong Zhang /* do supperdiagonal part */ 921b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 922b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 923b941877fSHong Zhang /* do subdiagonal part */ 924b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 925b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 926b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 92765d70643SHong Zhang 928a30f8f8cSSatish Balay PetscFunctionReturn(0); 929a30f8f8cSSatish Balay } 930a30f8f8cSSatish Balay 9314a2ae208SSatish Balay #undef __FUNCT__ 9324a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 933dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 934a30f8f8cSSatish Balay { 935de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 936dfbe8321SBarry Smith PetscErrorCode ierr; 937521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 938a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 939a9d4b620SHong Zhang 940a9d4b620SHong Zhang PetscFunctionBegin; 941a9d4b620SHong Zhang /* 94256faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 94356faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 944a9d4b620SHong Zhang */ 945a9d4b620SHong Zhang /* diagonal part */ 946a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9472dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 948a9d4b620SHong Zhang 949a9d4b620SHong Zhang /* subdiagonal part */ 950a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 951a9d4b620SHong Zhang 952a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9531ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 955a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9561ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 957a9d4b620SHong Zhang 958a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9591ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 960a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 961a9d4b620SHong Zhang 962a9d4b620SHong Zhang /* supperdiagonal part */ 963a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 964a9d4b620SHong Zhang 965a9d4b620SHong Zhang PetscFunctionReturn(0); 966a9d4b620SHong Zhang } 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang #undef __FUNCT__ 969a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 970dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 971a9d4b620SHong Zhang { 972a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 973dfbe8321SBarry Smith PetscErrorCode ierr; 974a30f8f8cSSatish Balay 975a30f8f8cSSatish Balay PetscFunctionBegin; 976b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 977b941877fSHong Zhang /* do diagonal part */ 978b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 979b941877fSHong Zhang /* do supperdiagonal part */ 980b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 981de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 982de8b6608SHong Zhang 983b941877fSHong Zhang /* do subdiagonal part */ 984a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 985a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 986a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 987aa482183SHong Zhang 988a30f8f8cSSatish Balay PetscFunctionReturn(0); 989a30f8f8cSSatish Balay } 990a30f8f8cSSatish Balay 991a30f8f8cSSatish Balay /* 992a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 993a30f8f8cSSatish Balay diagonal block 994a30f8f8cSSatish Balay */ 9954a2ae208SSatish Balay #undef __FUNCT__ 9964a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 997dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 998a30f8f8cSSatish Balay { 999a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1000dfbe8321SBarry Smith PetscErrorCode ierr; 1001a30f8f8cSSatish Balay 1002a30f8f8cSSatish Balay PetscFunctionBegin; 100329bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1004a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1005a30f8f8cSSatish Balay PetscFunctionReturn(0); 1006a30f8f8cSSatish Balay } 1007a30f8f8cSSatish Balay 10084a2ae208SSatish Balay #undef __FUNCT__ 10094a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1010f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1011a30f8f8cSSatish Balay { 1012a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1013dfbe8321SBarry Smith PetscErrorCode ierr; 1014a30f8f8cSSatish Balay 1015a30f8f8cSSatish Balay PetscFunctionBegin; 1016f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1017f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1018a30f8f8cSSatish Balay PetscFunctionReturn(0); 1019a30f8f8cSSatish Balay } 1020a30f8f8cSSatish Balay 10214a2ae208SSatish Balay #undef __FUNCT__ 10224a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10231302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1024a30f8f8cSSatish Balay { 1025d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1026d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1027d0d4cfc2SHong Zhang PetscErrorCode ierr; 1028d0d4cfc2SHong Zhang PetscInt bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1029d0d4cfc2SHong Zhang PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1030d0d4cfc2SHong Zhang PetscInt *cmap,*idx_p,cstart = mat->cstart; 1031d0d4cfc2SHong Zhang 1032a30f8f8cSSatish Balay PetscFunctionBegin; 1033d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1034d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1035d0d4cfc2SHong Zhang 1036d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1037d0d4cfc2SHong Zhang /* 1038d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1039d0d4cfc2SHong Zhang */ 1040d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1041d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1042d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1043d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1044d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1045d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1046d0d4cfc2SHong Zhang } 1047d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1048d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1049d0d4cfc2SHong Zhang } 1050d0d4cfc2SHong Zhang 1051d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1052d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1053d0d4cfc2SHong Zhang 1054d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1055d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1056d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1057d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1058d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1059d0d4cfc2SHong Zhang nztot = nzA + nzB; 1060d0d4cfc2SHong Zhang 1061d0d4cfc2SHong Zhang cmap = mat->garray; 1062d0d4cfc2SHong Zhang if (v || idx) { 1063d0d4cfc2SHong Zhang if (nztot) { 1064d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1065d0d4cfc2SHong Zhang PetscInt imark = -1; 1066d0d4cfc2SHong Zhang if (v) { 1067d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1068d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1069d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1070d0d4cfc2SHong Zhang else break; 1071d0d4cfc2SHong Zhang } 1072d0d4cfc2SHong Zhang imark = i; 1073d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1074d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1075d0d4cfc2SHong Zhang } 1076d0d4cfc2SHong Zhang if (idx) { 1077d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1078d0d4cfc2SHong Zhang if (imark > -1) { 1079d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1080d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1081d0d4cfc2SHong Zhang } 1082d0d4cfc2SHong Zhang } else { 1083d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1084d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1085d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1086d0d4cfc2SHong Zhang else break; 1087d0d4cfc2SHong Zhang } 1088d0d4cfc2SHong Zhang imark = i; 1089d0d4cfc2SHong Zhang } 1090d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1091d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1092d0d4cfc2SHong Zhang } 1093d0d4cfc2SHong Zhang } else { 1094d0d4cfc2SHong Zhang if (idx) *idx = 0; 1095d0d4cfc2SHong Zhang if (v) *v = 0; 1096d0d4cfc2SHong Zhang } 1097d0d4cfc2SHong Zhang } 1098d0d4cfc2SHong Zhang *nz = nztot; 1099d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1100d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1101a30f8f8cSSatish Balay PetscFunctionReturn(0); 1102a30f8f8cSSatish Balay } 1103a30f8f8cSSatish Balay 11044a2ae208SSatish Balay #undef __FUNCT__ 11054a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11061302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1107a30f8f8cSSatish Balay { 1108a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1109a30f8f8cSSatish Balay 1110a30f8f8cSSatish Balay PetscFunctionBegin; 1111abc0a331SBarry Smith if (!baij->getrowactive) { 1112abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1113a30f8f8cSSatish Balay } 1114a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1115a30f8f8cSSatish Balay PetscFunctionReturn(0); 1116a30f8f8cSSatish Balay } 1117a30f8f8cSSatish Balay 11184a2ae208SSatish Balay #undef __FUNCT__ 1119d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1120d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1121d0d4cfc2SHong Zhang { 1122d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1123d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1124d0d4cfc2SHong Zhang 1125d0d4cfc2SHong Zhang PetscFunctionBegin; 1126d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1127d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1128d0d4cfc2SHong Zhang } 1129d0d4cfc2SHong Zhang #undef __FUNCT__ 1130d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1131d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1132d0d4cfc2SHong Zhang { 1133d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1134d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1135d0d4cfc2SHong Zhang 1136d0d4cfc2SHong Zhang PetscFunctionBegin; 1137d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1138d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1139d0d4cfc2SHong Zhang } 1140d0d4cfc2SHong Zhang 1141d0d4cfc2SHong Zhang #undef __FUNCT__ 114299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 114499cafbc1SBarry Smith { 114599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 114699cafbc1SBarry Smith PetscErrorCode ierr; 114799cafbc1SBarry Smith 114899cafbc1SBarry Smith PetscFunctionBegin; 114999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115199cafbc1SBarry Smith PetscFunctionReturn(0); 115299cafbc1SBarry Smith } 115399cafbc1SBarry Smith 115499cafbc1SBarry Smith #undef __FUNCT__ 115599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 115699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 115799cafbc1SBarry Smith { 115899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115999cafbc1SBarry Smith PetscErrorCode ierr; 116099cafbc1SBarry Smith 116199cafbc1SBarry Smith PetscFunctionBegin; 116299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 116499cafbc1SBarry Smith PetscFunctionReturn(0); 116599cafbc1SBarry Smith } 116699cafbc1SBarry Smith 116799cafbc1SBarry Smith #undef __FUNCT__ 11684a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1169dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1170a30f8f8cSSatish Balay { 1171a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1172dfbe8321SBarry Smith PetscErrorCode ierr; 1173a30f8f8cSSatish Balay 1174a30f8f8cSSatish Balay PetscFunctionBegin; 1175a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1176a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay PetscFunctionReturn(0); 1178a30f8f8cSSatish Balay } 1179a30f8f8cSSatish Balay 11804a2ae208SSatish Balay #undef __FUNCT__ 11814a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1182dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1183a30f8f8cSSatish Balay { 1184a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1185a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1186dfbe8321SBarry Smith PetscErrorCode ierr; 1187a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1188a30f8f8cSSatish Balay 1189a30f8f8cSSatish Balay PetscFunctionBegin; 1190521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1191a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1192a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1193a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1194a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1195a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1196a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1197a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1198a30f8f8cSSatish Balay info->nz_used = isend[0]; 1199a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1200a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1201a30f8f8cSSatish Balay info->memory = isend[3]; 1202a30f8f8cSSatish Balay info->mallocs = isend[4]; 1203a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1204d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1205a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1206a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1207a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1208a30f8f8cSSatish Balay info->memory = irecv[3]; 1209a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1210a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1211d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1212a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1213a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1214a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1215a30f8f8cSSatish Balay info->memory = irecv[3]; 1216a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1217a30f8f8cSSatish Balay } else { 121877431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1219a30f8f8cSSatish Balay } 1220f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1221f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1222f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1223f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1224a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1225a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1226a30f8f8cSSatish Balay info->factor_mallocs = 0; 1227a30f8f8cSSatish Balay PetscFunctionReturn(0); 1228a30f8f8cSSatish Balay } 1229a30f8f8cSSatish Balay 12304a2ae208SSatish Balay #undef __FUNCT__ 12314a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1232dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1233a30f8f8cSSatish Balay { 1234a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1235d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1236dfbe8321SBarry Smith PetscErrorCode ierr; 1237a30f8f8cSSatish Balay 1238a30f8f8cSSatish Balay PetscFunctionBegin; 1239e98b92d7SKris Buschelman switch (op) { 1240e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1241e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1242e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1243e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1244e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1245e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1246e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1247a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1248a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1249e98b92d7SKris Buschelman break; 1250e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1251a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1252a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1253a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1254e98b92d7SKris Buschelman break; 1255e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1256e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1257e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1258*ae15b995SBarry Smith ierr = PetscInfo(A,"Option ignored\n");CHKERRQ(ierr); 1259e98b92d7SKris Buschelman break; 1260e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1261a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1262a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1263a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1264e98b92d7SKris Buschelman break; 1265e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1266a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1267e98b92d7SKris Buschelman break; 1268e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 126929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1270e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1271a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1272e98b92d7SKris Buschelman break; 12739a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12749a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12759a4540c5SBarry Smith case MAT_HERMITIAN: 12769a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 127777e54ba9SKris Buschelman case MAT_SYMMETRIC: 127877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12799a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12809a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12819a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 128277e54ba9SKris Buschelman break; 1283d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1284d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_TRUE; 1285d0d4cfc2SHong Zhang break; 1286d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1287d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_FALSE; 1288d0d4cfc2SHong Zhang break; 1289d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1290d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1291d0d4cfc2SHong Zhang break; 1292e98b92d7SKris Buschelman default: 129329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1294a30f8f8cSSatish Balay } 1295a30f8f8cSSatish Balay PetscFunctionReturn(0); 1296a30f8f8cSSatish Balay } 1297a30f8f8cSSatish Balay 12984a2ae208SSatish Balay #undef __FUNCT__ 12998115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1300dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1301a30f8f8cSSatish Balay { 1302dfbe8321SBarry Smith PetscErrorCode ierr; 1303a30f8f8cSSatish Balay PetscFunctionBegin; 1304999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13058115998fSBarry Smith PetscFunctionReturn(0); 1306a30f8f8cSSatish Balay } 1307a30f8f8cSSatish Balay 13084a2ae208SSatish Balay #undef __FUNCT__ 13094a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1310dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1311a30f8f8cSSatish Balay { 1312a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1313a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1314dfbe8321SBarry Smith PetscErrorCode ierr; 13155e90f9d9SHong Zhang PetscInt nv,m,n; 1316b3bf805bSHong Zhang PetscTruth flg; 1317a30f8f8cSSatish Balay 1318a30f8f8cSSatish Balay PetscFunctionBegin; 1319a30f8f8cSSatish Balay if (ll != rr){ 1320b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1321b3bf805bSHong Zhang if (!flg) 132229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1323a30f8f8cSSatish Balay } 1324b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1325b3bf805bSHong Zhang 13265e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13275e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1328b3bf805bSHong Zhang 13295e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13305e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13315e90f9d9SHong Zhang 1332a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 13335e90f9d9SHong Zhang 13345e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1335a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13365e90f9d9SHong Zhang 13375e90f9d9SHong Zhang /* scale the diagonal part */ 1338a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1339a30f8f8cSSatish Balay 13405e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1341a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1342a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1343a30f8f8cSSatish Balay PetscFunctionReturn(0); 1344a30f8f8cSSatish Balay } 1345a30f8f8cSSatish Balay 13464a2ae208SSatish Balay #undef __FUNCT__ 13474a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1348dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1349a30f8f8cSSatish Balay { 1350a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1351a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 13521302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1353dfbe8321SBarry Smith PetscErrorCode ierr; 1354a30f8f8cSSatish Balay 1355a30f8f8cSSatish Balay PetscFunctionBegin; 1356a30f8f8cSSatish Balay if (!a->rank) { 1357a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1358a30f8f8cSSatish Balay } 13591302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1360a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1361a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1362a30f8f8cSSatish Balay PetscFunctionReturn(0); 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay 13654a2ae208SSatish Balay #undef __FUNCT__ 13664a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1367dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1368a30f8f8cSSatish Balay { 1369f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1370dfbe8321SBarry Smith PetscErrorCode ierr; 1371a30f8f8cSSatish Balay 1372a30f8f8cSSatish Balay PetscFunctionBegin; 1373a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1374a30f8f8cSSatish Balay PetscFunctionReturn(0); 1375a30f8f8cSSatish Balay } 1376a30f8f8cSSatish Balay 13776849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1378a30f8f8cSSatish Balay 13794a2ae208SSatish Balay #undef __FUNCT__ 13804a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1381dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1382a30f8f8cSSatish Balay { 1383a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1384a30f8f8cSSatish Balay Mat a,b,c,d; 1385a30f8f8cSSatish Balay PetscTruth flg; 1386dfbe8321SBarry Smith PetscErrorCode ierr; 1387a30f8f8cSSatish Balay 1388a30f8f8cSSatish Balay PetscFunctionBegin; 1389a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1390a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1391a30f8f8cSSatish Balay 1392a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1393abc0a331SBarry Smith if (flg) { 1394a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay } 1396a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1397a30f8f8cSSatish Balay PetscFunctionReturn(0); 1398a30f8f8cSSatish Balay } 1399a30f8f8cSSatish Balay 14004a2ae208SSatish Balay #undef __FUNCT__ 14013c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 14023c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 14033c896bc6SHong Zhang { 14043c896bc6SHong Zhang PetscErrorCode ierr; 14053c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 14063c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 14073c896bc6SHong Zhang 14083c896bc6SHong Zhang PetscFunctionBegin; 14093c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14103c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1411d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14123c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1413d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14143c896bc6SHong Zhang } else { 14153c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14163c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14173c896bc6SHong Zhang } 14183c896bc6SHong Zhang PetscFunctionReturn(0); 14193c896bc6SHong Zhang } 14203c896bc6SHong Zhang 14213c896bc6SHong Zhang #undef __FUNCT__ 14224a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1423dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1424273d9f13SBarry Smith { 1425dfbe8321SBarry Smith PetscErrorCode ierr; 1426273d9f13SBarry Smith 1427273d9f13SBarry Smith PetscFunctionBegin; 1428273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1429273d9f13SBarry Smith PetscFunctionReturn(0); 1430273d9f13SBarry Smith } 1431a5e6ed63SBarry Smith 14324fe895cdSHong Zhang #include "petscblaslapack.h" 14334fe895cdSHong Zhang #undef __FUNCT__ 14344fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14354fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14364fe895cdSHong Zhang { 14374fe895cdSHong Zhang PetscErrorCode ierr; 14384fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14394fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14404fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14414fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14424fe895cdSHong Zhang 14434fe895cdSHong Zhang PetscFunctionBegin; 14444fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14454fe895cdSHong Zhang PetscScalar alpha = a; 14464fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14474fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14484fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14494fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14504fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14514fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14524fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14534fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14544fe895cdSHong Zhang } else { 1455d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14564fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1457d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14584fe895cdSHong Zhang } 14594fe895cdSHong Zhang PetscFunctionReturn(0); 14604fe895cdSHong Zhang } 14614fe895cdSHong Zhang 1462a5e6ed63SBarry Smith #undef __FUNCT__ 1463a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14641302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1465a5e6ed63SBarry Smith { 14666849ba73SBarry Smith PetscErrorCode ierr; 14671302d50aSBarry Smith PetscInt i; 1468a5e6ed63SBarry Smith PetscTruth flg; 1469a5e6ed63SBarry Smith 14706849ba73SBarry Smith PetscFunctionBegin; 1471a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1472a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1473a5e6ed63SBarry Smith if (!flg) { 14741302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1475a5e6ed63SBarry Smith } 1476a5e6ed63SBarry Smith } 1477a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1478a5e6ed63SBarry Smith PetscFunctionReturn(0); 1479a5e6ed63SBarry Smith } 1480a5e6ed63SBarry Smith 1481a5e6ed63SBarry Smith 1482a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1483a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1484a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1485a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1486a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1487a9d4b620SHong Zhang MatMult_MPISBAIJ, 148897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1489431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1490431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay 0, 149497304618SKris Buschelman /*10*/ 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 14972798e883SHong Zhang MatRelax_MPISBAIJ, 1498a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 149997304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1500a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1501a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1502a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1503a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 150497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1505a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1508a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1509dcf5cc72SBarry Smith /*25*/ 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay 0, 151497304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1515b5df2d14SHong Zhang 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay 0, 151997304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 15244fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1525a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1526d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1527a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15283c896bc6SHong Zhang MatCopy_MPISBAIJ, 152997304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1530a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay 0, 1534521d7252SBarry Smith /*50*/ 0, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 1538a30f8f8cSSatish Balay 0, 153997304618SKris Buschelman /*55*/ 0, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 154497304618SKris Buschelman /*60*/ 0, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay 0, 15478a124369SBarry Smith MatGetPetscMaps_Petsc, 154824d5174aSHong Zhang 0, 154997304618SKris Buschelman /*65*/ 0, 155024d5174aSHong Zhang 0, 155124d5174aSHong Zhang 0, 155224d5174aSHong Zhang 0, 155324d5174aSHong Zhang 0, 155497304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 155524d5174aSHong Zhang 0, 155697304618SKris Buschelman 0, 155797304618SKris Buschelman 0, 155897304618SKris Buschelman 0, 155997304618SKris Buschelman /*75*/ 0, 156097304618SKris Buschelman 0, 156197304618SKris Buschelman 0, 156297304618SKris Buschelman 0, 156397304618SKris Buschelman 0, 156497304618SKris Buschelman /*80*/ 0, 156597304618SKris Buschelman 0, 156697304618SKris Buschelman 0, 156797304618SKris Buschelman 0, 1568865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1569865e5f61SKris Buschelman /*85*/ 0, 1570865e5f61SKris Buschelman 0, 1571865e5f61SKris Buschelman 0, 1572865e5f61SKris Buschelman 0, 1573865e5f61SKris Buschelman 0, 1574865e5f61SKris Buschelman /*90*/ 0, 1575865e5f61SKris Buschelman 0, 1576865e5f61SKris Buschelman 0, 1577865e5f61SKris Buschelman 0, 1578865e5f61SKris Buschelman 0, 1579865e5f61SKris Buschelman /*95*/ 0, 1580865e5f61SKris Buschelman 0, 1581865e5f61SKris Buschelman 0, 158299cafbc1SBarry Smith 0, 158399cafbc1SBarry Smith 0, 158499cafbc1SBarry Smith /*100*/0, 158599cafbc1SBarry Smith 0, 158699cafbc1SBarry Smith 0, 158799cafbc1SBarry Smith 0, 158899cafbc1SBarry Smith 0, 158999cafbc1SBarry Smith /*105*/0, 159099cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1591d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1592d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1593d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 159499cafbc1SBarry Smith }; 1595a30f8f8cSSatish Balay 1596a30f8f8cSSatish Balay 1597a30f8f8cSSatish Balay EXTERN_C_BEGIN 15984a2ae208SSatish Balay #undef __FUNCT__ 15994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1600be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1601a30f8f8cSSatish Balay { 1602a30f8f8cSSatish Balay PetscFunctionBegin; 1603a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1604a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1605a30f8f8cSSatish Balay PetscFunctionReturn(0); 1606a30f8f8cSSatish Balay } 1607a30f8f8cSSatish Balay EXTERN_C_END 1608a30f8f8cSSatish Balay 1609273d9f13SBarry Smith EXTERN_C_BEGIN 16104a2ae208SSatish Balay #undef __FUNCT__ 1611a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1612be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1613a23d5eceSKris Buschelman { 1614a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1615dfbe8321SBarry Smith PetscErrorCode ierr; 16161302d50aSBarry Smith PetscInt i,mbs,Mbs; 1617a23d5eceSKris Buschelman 1618a23d5eceSKris Buschelman PetscFunctionBegin; 1619a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1620a23d5eceSKris Buschelman 1621a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1622a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1623a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 162477431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 162577431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1626a23d5eceSKris Buschelman if (d_nnz) { 1627a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 162877431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1629a23d5eceSKris Buschelman } 1630a23d5eceSKris Buschelman } 1631a23d5eceSKris Buschelman if (o_nnz) { 1632a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 163377431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1634a23d5eceSKris Buschelman } 1635a23d5eceSKris Buschelman } 1636a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1637a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1638a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1639a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1640a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1641a23d5eceSKris Buschelman 1642a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1643a23d5eceSKris Buschelman mbs = B->m/bs; 1644a23d5eceSKris Buschelman Mbs = B->M/bs; 1645a23d5eceSKris Buschelman if (mbs*bs != B->m) { 164677431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1647a23d5eceSKris Buschelman } 1648a23d5eceSKris Buschelman 1649521d7252SBarry Smith B->bs = bs; 1650a23d5eceSKris Buschelman b->bs2 = bs*bs; 1651a23d5eceSKris Buschelman b->mbs = mbs; 1652a23d5eceSKris Buschelman b->nbs = mbs; 1653a23d5eceSKris Buschelman b->Mbs = Mbs; 1654a23d5eceSKris Buschelman b->Nbs = Mbs; 1655a23d5eceSKris Buschelman 1656a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1657a23d5eceSKris Buschelman b->rowners[0] = 0; 1658a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1659a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1660a23d5eceSKris Buschelman } 1661a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1662a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1663a23d5eceSKris Buschelman b->cstart = b->rstart; 1664a23d5eceSKris Buschelman b->cend = b->rend; 1665a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1666a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1667a23d5eceSKris Buschelman } 1668a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1669a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1670a23d5eceSKris Buschelman 1671a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1672a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1673a23d5eceSKris Buschelman 1674f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1675f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->A,B->m,B->m,B->m,B->m);CHKERRQ(ierr); 16769c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1677c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 167852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16799c097c71SKris Buschelman 1680f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1681f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->B,B->m,B->M,B->m,B->M);CHKERRQ(ierr); 16824aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1683589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 168452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1685a23d5eceSKris Buschelman 1686a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1687a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1688a23d5eceSKris Buschelman 1689a23d5eceSKris Buschelman PetscFunctionReturn(0); 1690a23d5eceSKris Buschelman } 1691a23d5eceSKris Buschelman EXTERN_C_END 1692a23d5eceSKris Buschelman 16930bad9183SKris Buschelman /*MC 1694fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16950bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16960bad9183SKris Buschelman 16970bad9183SKris Buschelman Options Database Keys: 16980bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16990bad9183SKris Buschelman 17000bad9183SKris Buschelman Level: beginner 17010bad9183SKris Buschelman 17020bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17030bad9183SKris Buschelman M*/ 17040bad9183SKris Buschelman 1705a23d5eceSKris Buschelman EXTERN_C_BEGIN 1706a23d5eceSKris Buschelman #undef __FUNCT__ 17074a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1708be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1709b5df2d14SHong Zhang { 1710b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1711dfbe8321SBarry Smith PetscErrorCode ierr; 1712b5df2d14SHong Zhang PetscTruth flg; 1713b5df2d14SHong Zhang 1714b5df2d14SHong Zhang PetscFunctionBegin; 1715b5df2d14SHong Zhang 1716b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1717b0a32e0cSBarry Smith B->data = (void*)b; 1718b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1719b5df2d14SHong Zhang 1720b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1721b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1722b5df2d14SHong Zhang B->mapping = 0; 1723b5df2d14SHong Zhang B->factor = 0; 1724b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1725b5df2d14SHong Zhang 1726b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1727b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1728b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang /* build local table of row and column ownerships */ 17311302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1732273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1733273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 173452e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1735b5df2d14SHong Zhang 1736b5df2d14SHong Zhang /* build cache for off array entries formed */ 1737b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1738b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1739b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1740b5df2d14SHong Zhang b->garray = PETSC_NULL; 1741b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1742b5df2d14SHong Zhang 1743f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1744b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 174564a35ccbSBarry Smith b->setvalueslen = 0; 1746b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1747b5df2d14SHong Zhang #endif 1748b5df2d14SHong Zhang 1749b5df2d14SHong Zhang /* stuff used in block assembly */ 1750b5df2d14SHong Zhang b->barray = 0; 1751b5df2d14SHong Zhang 1752b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1753b5df2d14SHong Zhang b->lvec = 0; 1754b5df2d14SHong Zhang b->Mvctx = 0; 175540781036SHong Zhang b->slvec0 = 0; 175640781036SHong Zhang b->slvec0b = 0; 175740781036SHong Zhang b->slvec1 = 0; 175840781036SHong Zhang b->slvec1a = 0; 175940781036SHong Zhang b->slvec1b = 0; 176040781036SHong Zhang b->sMvctx = 0; 1761b5df2d14SHong Zhang 1762b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1763b5df2d14SHong Zhang b->rowindices = 0; 1764b5df2d14SHong Zhang b->rowvalues = 0; 1765b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1766b5df2d14SHong Zhang 1767b5df2d14SHong Zhang /* hash table stuff */ 1768b5df2d14SHong Zhang b->ht = 0; 1769b5df2d14SHong Zhang b->hd = 0; 1770b5df2d14SHong Zhang b->ht_size = 0; 1771b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1772b5df2d14SHong Zhang b->ht_fact = 0; 1773b5df2d14SHong Zhang b->ht_total_ct = 0; 1774b5df2d14SHong Zhang b->ht_insert_ct = 0; 1775b5df2d14SHong Zhang 1776e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1777b5df2d14SHong Zhang if (flg) { 1778f6275e2eSBarry Smith PetscReal fact = 1.39; 1779b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1780e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1781b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1782b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1783*ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1784b5df2d14SHong Zhang } 1785b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1786b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1787b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1788b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1789b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1790b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1791b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1792b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1793b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1794a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1795a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1796a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 179723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 179823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 179923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 180023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1801b5df2d14SHong Zhang PetscFunctionReturn(0); 1802b5df2d14SHong Zhang } 1803273d9f13SBarry Smith EXTERN_C_END 1804b5df2d14SHong Zhang 1805209238afSKris Buschelman /*MC 1806002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1807209238afSKris Buschelman 1808209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1809209238afSKris Buschelman and MATMPISBAIJ otherwise. 1810209238afSKris Buschelman 1811209238afSKris Buschelman Options Database Keys: 1812209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1813209238afSKris Buschelman 1814209238afSKris Buschelman Level: beginner 1815209238afSKris Buschelman 1816209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1817209238afSKris Buschelman M*/ 1818209238afSKris Buschelman 1819209238afSKris Buschelman EXTERN_C_BEGIN 1820209238afSKris Buschelman #undef __FUNCT__ 1821209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1822be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1823dfbe8321SBarry Smith { 18246849ba73SBarry Smith PetscErrorCode ierr; 18251302d50aSBarry Smith PetscMPIInt size; 1826209238afSKris Buschelman 1827209238afSKris Buschelman PetscFunctionBegin; 1828209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1829209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1830209238afSKris Buschelman if (size == 1) { 1831209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1832209238afSKris Buschelman } else { 1833209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1834209238afSKris Buschelman } 1835209238afSKris Buschelman PetscFunctionReturn(0); 1836209238afSKris Buschelman } 1837209238afSKris Buschelman EXTERN_C_END 1838209238afSKris Buschelman 18394a2ae208SSatish Balay #undef __FUNCT__ 18404a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1841b5df2d14SHong Zhang /*@C 1842b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1843b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1844b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1845b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1846b5df2d14SHong Zhang 1847b5df2d14SHong Zhang Collective on Mat 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang Input Parameters: 1850b5df2d14SHong Zhang + A - the matrix 1851b5df2d14SHong Zhang . bs - size of blockk 1852b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1853b5df2d14SHong Zhang submatrix (same for all local rows) 1854b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18556d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18566d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18576d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1858b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1859b5df2d14SHong Zhang submatrix (same for all local rows). 1860b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1861b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1862b5df2d14SHong Zhang each block row) or PETSC_NULL. 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang Options Database Keys: 1866b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1867b5df2d14SHong Zhang block calculations (much slower) 1868b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1869b5df2d14SHong Zhang 1870b5df2d14SHong Zhang Notes: 1871b5df2d14SHong Zhang 1872b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1873b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1874b5df2d14SHong Zhang 187549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187649a6f317SBarry Smith 1877b5df2d14SHong Zhang Storage Information: 1878b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1879b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1880b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1881b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1882b5df2d14SHong Zhang 1883b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1884b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1885b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1886b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1887b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1888b5df2d14SHong Zhang 1889b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1890b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1891b5df2d14SHong Zhang 1892b5df2d14SHong Zhang .vb 1893b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1894b5df2d14SHong Zhang ------------------- 1895b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1896b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1897b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1898b5df2d14SHong Zhang ------------------- 1899b5df2d14SHong Zhang .ve 1900b5df2d14SHong Zhang 1901b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1902b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19036d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19046d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1905b5df2d14SHong Zhang 19066d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19076d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1908b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1909b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1910b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1911b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1912b5df2d14SHong Zhang matrices. 1913b5df2d14SHong Zhang 1914b5df2d14SHong Zhang Level: intermediate 1915b5df2d14SHong Zhang 1916b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1917b5df2d14SHong Zhang 1918b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1919b5df2d14SHong Zhang @*/ 1920be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1921b5df2d14SHong Zhang { 19221302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1923b5df2d14SHong Zhang 1924b5df2d14SHong Zhang PetscFunctionBegin; 1925a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1926a23d5eceSKris Buschelman if (f) { 1927a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1928b5df2d14SHong Zhang } 1929b5df2d14SHong Zhang PetscFunctionReturn(0); 1930b5df2d14SHong Zhang } 1931b5df2d14SHong Zhang 19324a2ae208SSatish Balay #undef __FUNCT__ 19334a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1934a30f8f8cSSatish Balay /*@C 1935a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1936a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1937a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1938a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1939a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1940a30f8f8cSSatish Balay 1941a30f8f8cSSatish Balay Collective on MPI_Comm 1942a30f8f8cSSatish Balay 1943a30f8f8cSSatish Balay Input Parameters: 1944a30f8f8cSSatish Balay + comm - MPI communicator 1945a30f8f8cSSatish Balay . bs - size of blockk 1946a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1947a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1948a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1949a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1950a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1951a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1952a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1953a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1954a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1955a30f8f8cSSatish Balay submatrix (same for all local rows) 1956a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19576d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19586d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19596d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1960a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1961a30f8f8cSSatish Balay submatrix (same for all local rows). 1962a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1963a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1964a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1965a30f8f8cSSatish Balay 1966a30f8f8cSSatish Balay Output Parameter: 1967a30f8f8cSSatish Balay . A - the matrix 1968a30f8f8cSSatish Balay 1969a30f8f8cSSatish Balay Options Database Keys: 1970a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1971a30f8f8cSSatish Balay block calculations (much slower) 1972a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1973a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1974a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay Notes: 1977d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1978d1be2dadSMatthew Knepley 1979a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1980a30f8f8cSSatish Balay (possibly both). 1981a30f8f8cSSatish Balay 1982a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1983a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1984a30f8f8cSSatish Balay 198549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 198649a6f317SBarry Smith 1987a30f8f8cSSatish Balay Storage Information: 1988a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1989a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1990a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1991a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1992a30f8f8cSSatish Balay 1993a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1994a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1995a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1996a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1997a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2000a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay .vb 2003a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2004a30f8f8cSSatish Balay ------------------- 2005a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2006a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2007a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2008a30f8f8cSSatish Balay ------------------- 2009a30f8f8cSSatish Balay .ve 2010a30f8f8cSSatish Balay 2011a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2012a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20136d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20146d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2015a30f8f8cSSatish Balay 20166d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20176d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2018a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2019a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2020a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2021a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2022a30f8f8cSSatish Balay matrices. 2023a30f8f8cSSatish Balay 2024a30f8f8cSSatish Balay Level: intermediate 2025a30f8f8cSSatish Balay 2026a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2027a30f8f8cSSatish Balay 2028a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2029a30f8f8cSSatish Balay @*/ 2030a30f8f8cSSatish Balay 2031be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2032a30f8f8cSSatish Balay { 20336849ba73SBarry Smith PetscErrorCode ierr; 20341302d50aSBarry Smith PetscMPIInt size; 2035a30f8f8cSSatish Balay 2036a30f8f8cSSatish Balay PetscFunctionBegin; 2037f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2038f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2039273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2040273d9f13SBarry Smith if (size > 1) { 2041b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2042b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2043273d9f13SBarry Smith } else { 2044273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2045273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2046273d9f13SBarry Smith } 2047a30f8f8cSSatish Balay PetscFunctionReturn(0); 2048a30f8f8cSSatish Balay } 2049a30f8f8cSSatish Balay 2050a30f8f8cSSatish Balay 20514a2ae208SSatish Balay #undef __FUNCT__ 20524a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20536849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2054a30f8f8cSSatish Balay { 2055a30f8f8cSSatish Balay Mat mat; 2056a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2057dfbe8321SBarry Smith PetscErrorCode ierr; 2058521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 2059387bc808SHong Zhang PetscScalar *array; 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay PetscFunctionBegin; 2062a30f8f8cSSatish Balay *newmat = 0; 2063f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2064f69a0ea3SMatthew Knepley ierr = MatSetSizes(mat,matin->m,matin->n,matin->M,matin->N);CHKERRQ(ierr); 2065be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20661d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2067e1b6402fSHong Zhang 206882327fa8SHong Zhang mat->factor = matin->factor; 2069273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 207082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20717fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20727fff6886SHong Zhang 2073b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2074521d7252SBarry Smith mat->bs = matin->bs; 2075a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2076a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2077a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2078a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2079a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2080a30f8f8cSSatish Balay 2081a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2082a30f8f8cSSatish Balay a->rend = oldmat->rend; 2083a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2084a30f8f8cSSatish Balay a->cend = oldmat->cend; 2085a30f8f8cSSatish Balay a->size = oldmat->size; 2086a30f8f8cSSatish Balay a->rank = oldmat->rank; 2087a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2088a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2089a30f8f8cSSatish Balay a->rowindices = 0; 2090a30f8f8cSSatish Balay a->rowvalues = 0; 2091a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2092a30f8f8cSSatish Balay a->barray = 0; 2093a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2094a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2095a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2096a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2097a30f8f8cSSatish Balay 2098a30f8f8cSSatish Balay /* hash table stuff */ 2099a30f8f8cSSatish Balay a->ht = 0; 2100a30f8f8cSSatish Balay a->hd = 0; 2101a30f8f8cSSatish Balay a->ht_size = 0; 2102a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2103a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2104a30f8f8cSSatish Balay a->ht_total_ct = 0; 2105a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2106a30f8f8cSSatish Balay 21071302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2108a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2109521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 2110a30f8f8cSSatish Balay if (oldmat->colmap) { 2111a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2112a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2113a30f8f8cSSatish Balay #else 21141302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 211552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21161302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2117a30f8f8cSSatish Balay #endif 2118a30f8f8cSSatish Balay } else a->colmap = 0; 2119387bc808SHong Zhang 2120a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21211302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 212252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21231302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2124a30f8f8cSSatish Balay } else a->garray = 0; 2125a30f8f8cSSatish Balay 2126a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 212752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2128a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 212952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 213082327fa8SHong Zhang 213182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 213252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 213452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2135387bc808SHong Zhang 2136387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21371ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2138387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2139387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21401ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21411ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2142387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21431ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 214452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 214552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 214652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 214852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2149387bc808SHong Zhang 2150387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2151387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2152387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 215352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 215482327fa8SHong Zhang 2155a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 215652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2157a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 215852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2159b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay *newmat = mat; 2161a30f8f8cSSatish Balay PetscFunctionReturn(0); 2162a30f8f8cSSatish Balay } 2163a30f8f8cSSatish Balay 2164a30f8f8cSSatish Balay #include "petscsys.h" 2165a30f8f8cSSatish Balay 21664a2ae208SSatish Balay #undef __FUNCT__ 21674a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2168f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2169a30f8f8cSSatish Balay { 2170a30f8f8cSSatish Balay Mat A; 21716849ba73SBarry Smith PetscErrorCode ierr; 217213f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 217387828ca2SBarry Smith PetscScalar *vals,*buf; 2174a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2175a30f8f8cSSatish Balay MPI_Status status; 21762fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 217713f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21782fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21791302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21801302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21811302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 218213f74950SBarry Smith int fd; 2183a30f8f8cSSatish Balay 2184a30f8f8cSSatish Balay PetscFunctionBegin; 2185b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay 2187a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay if (!rank) { 2190b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2191a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2192552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2193a30f8f8cSSatish Balay if (header[3] < 0) { 219429bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2195a30f8f8cSSatish Balay } 2196a30f8f8cSSatish Balay } 2197a30f8f8cSSatish Balay 2198a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2200a30f8f8cSSatish Balay 220129bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2202a30f8f8cSSatish Balay 2203a30f8f8cSSatish Balay /* 2204a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2205a30f8f8cSSatish Balay divisible by the blocksize 2206a30f8f8cSSatish Balay */ 2207a30f8f8cSSatish Balay Mbs = M/bs; 2208a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2209a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2210a30f8f8cSSatish Balay else Mbs++; 2211a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2212*ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2213a30f8f8cSSatish Balay } 2214a30f8f8cSSatish Balay 2215a30f8f8cSSatish Balay /* determine ownership of all rows */ 2216a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2217a30f8f8cSSatish Balay m = mbs*bs; 2218a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay browners = rowners + size + 1; 2220a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay rowners[0] = 0; 2222a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2223a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2224a30f8f8cSSatish Balay rstart = rowners[rank]; 2225a30f8f8cSSatish Balay rend = rowners[rank+1]; 2226a30f8f8cSSatish Balay 2227a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22282fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay if (!rank) { 22301302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2232a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2233a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2234a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2235a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2236a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2237a30f8f8cSSatish Balay } else { 2238a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2239a30f8f8cSSatish Balay } 2240a30f8f8cSSatish Balay 22410222edb1SHong Zhang if (!rank) { /* procs[0] */ 2242a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22431302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22441302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2245a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2246a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2247a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2248a30f8f8cSSatish Balay } 2249a30f8f8cSSatish Balay } 2250a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay 2252a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2253a30f8f8cSSatish Balay maxnz = 0; 2254a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2255a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2256a30f8f8cSSatish Balay } 22571302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay 2259a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2260a30f8f8cSSatish Balay nz = procsnz[0]; 22611302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2262a30f8f8cSSatish Balay mycols = ibuf; 2263a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2264a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2266a30f8f8cSSatish Balay 2267a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2268a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2269a30f8f8cSSatish Balay nz = procsnz[i]; 2270a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2271a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay } 2273a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2274a30f8f8cSSatish Balay if (size != 1) { 2275a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2276a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2277a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2278a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2279a30f8f8cSSatish Balay } 2280a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22810222edb1SHong Zhang } else { /* procs[i], i>0 */ 2282a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2283a30f8f8cSSatish Balay nz = 0; 2284a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2285a30f8f8cSSatish Balay nz += locrowlens[i]; 2286a30f8f8cSSatish Balay } 22871302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2288a30f8f8cSSatish Balay mycols = ibuf; 2289a30f8f8cSSatish Balay /* receive message of column indices*/ 2290a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2291a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 229229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2293a30f8f8cSSatish Balay } 2294a30f8f8cSSatish Balay 2295a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22961302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2297a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22981302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22991302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2300a30f8f8cSSatish Balay masked1 = mask + Mbs; 2301a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2302a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2303a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2304a30f8f8cSSatish Balay dcount = 0; 2305a30f8f8cSSatish Balay odcount = 0; 2306a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2307a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2308a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23090222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2310a30f8f8cSSatish Balay if (!mask[tmp]) { 2311a30f8f8cSSatish Balay mask[tmp] = 1; 23120222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23130222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2314a30f8f8cSSatish Balay } 2315a30f8f8cSSatish Balay } 2316a30f8f8cSSatish Balay rowcount++; 2317a30f8f8cSSatish Balay } 2318a30f8f8cSSatish Balay 23190222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23200222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2321a30f8f8cSSatish Balay 2322a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2323a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2324a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2325a30f8f8cSSatish Balay } 2326a30f8f8cSSatish Balay 2327a30f8f8cSSatish Balay /* create our matrix */ 2328f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2329f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 233022191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 233122191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2332273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2333a30f8f8cSSatish Balay 2334a30f8f8cSSatish Balay if (!rank) { 233587828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2336a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2337a30f8f8cSSatish Balay nz = procsnz[0]; 2338a30f8f8cSSatish Balay vals = buf; 2339a30f8f8cSSatish Balay mycols = ibuf; 2340a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2341a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2342a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2343a30f8f8cSSatish Balay 2344a30f8f8cSSatish Balay /* insert into matrix */ 2345a30f8f8cSSatish Balay jj = rstart*bs; 2346a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23477e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2348a30f8f8cSSatish Balay mycols += locrowlens[i]; 2349a30f8f8cSSatish Balay vals += locrowlens[i]; 2350a30f8f8cSSatish Balay jj++; 2351a30f8f8cSSatish Balay } 23527e06b45fSHong Zhang 2353a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2354a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2355a30f8f8cSSatish Balay nz = procsnz[i]; 2356a30f8f8cSSatish Balay vals = buf; 2357a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay } 2360a30f8f8cSSatish Balay /* the last proc */ 2361a30f8f8cSSatish Balay if (size != 1){ 2362a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2363a30f8f8cSSatish Balay vals = buf; 2364a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2365a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2366a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2367a30f8f8cSSatish Balay } 2368a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23697e06b45fSHong Zhang 2370a30f8f8cSSatish Balay } else { 2371a30f8f8cSSatish Balay /* receive numeric values */ 237287828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2373a30f8f8cSSatish Balay 2374a30f8f8cSSatish Balay /* receive message of values*/ 2375a30f8f8cSSatish Balay vals = buf; 2376a30f8f8cSSatish Balay mycols = ibuf; 2377a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 237929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2380a30f8f8cSSatish Balay 2381a30f8f8cSSatish Balay /* insert into matrix */ 2382a30f8f8cSSatish Balay jj = rstart*bs; 2383a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2384a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2385a30f8f8cSSatish Balay mycols += locrowlens[i]; 2386a30f8f8cSSatish Balay vals += locrowlens[i]; 2387a30f8f8cSSatish Balay jj++; 2388a30f8f8cSSatish Balay } 2389a30f8f8cSSatish Balay } 23907e06b45fSHong Zhang 2391a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2392a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2393a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2394a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2395a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2396a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2397a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2398a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239922191285SKris Buschelman *newmat = A; 2400a30f8f8cSSatish Balay PetscFunctionReturn(0); 2401a30f8f8cSSatish Balay } 2402a30f8f8cSSatish Balay 24034a2ae208SSatish Balay #undef __FUNCT__ 24044a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2405dcf5cc72SBarry Smith /*XXXXX@ 2406a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2407a30f8f8cSSatish Balay 2408a30f8f8cSSatish Balay Input Parameters: 2409a30f8f8cSSatish Balay . mat - the matrix 2410a30f8f8cSSatish Balay . fact - factor 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay Collective on Mat 2413a30f8f8cSSatish Balay 2414a30f8f8cSSatish Balay Level: advanced 2415a30f8f8cSSatish Balay 2416a30f8f8cSSatish Balay Notes: 2417a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2418a30f8f8cSSatish Balay 2419a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2420a30f8f8cSSatish Balay 2421a30f8f8cSSatish Balay .seealso: MatSetOption() 2422dcf5cc72SBarry Smith @XXXXX*/ 2423dcf5cc72SBarry Smith 242424d5174aSHong Zhang 24254a2ae208SSatish Balay #undef __FUNCT__ 24264a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2427dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 242824d5174aSHong Zhang { 242924d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2430f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2431ca54ac64SHong Zhang PetscReal atmp; 243287828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2433dfbe8321SBarry Smith PetscErrorCode ierr; 24341302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24351302d50aSBarry Smith PetscMPIInt rank,size; 24361302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 243787828ca2SBarry Smith PetscScalar *va; 24388a1c53f2SBarry Smith MatScalar *ba; 2439f4c0e9e4SHong Zhang MPI_Status stat; 244024d5174aSHong Zhang 244124d5174aSHong Zhang PetscFunctionBegin; 2442d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24431ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2444f4c0e9e4SHong Zhang 244556faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 244656faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2447f4c0e9e4SHong Zhang 2448521d7252SBarry Smith bs = A->bs; 2449f4c0e9e4SHong Zhang mbs = a->mbs; 2450f4c0e9e4SHong Zhang Mbs = a->Mbs; 2451f4c0e9e4SHong Zhang ba = b->a; 2452f4c0e9e4SHong Zhang bi = b->i; 2453f4c0e9e4SHong Zhang bj = b->j; 2454f4c0e9e4SHong Zhang 2455f4c0e9e4SHong Zhang /* find ownerships */ 2456f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2457f4c0e9e4SHong Zhang 2458f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245982502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2460ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2461f4c0e9e4SHong Zhang 2462f4c0e9e4SHong Zhang /* row_max for B */ 2463b8475685SHong Zhang if (rank != size-1){ 2464f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2465f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2466f4c0e9e4SHong Zhang brow = bs*i; 2467f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2468f4c0e9e4SHong Zhang bcol = bs*(*bj); 2469f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2470ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 247104d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2472f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2473f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2474ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2475ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2476f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2477f4c0e9e4SHong Zhang } 2478f4c0e9e4SHong Zhang } 2479f4c0e9e4SHong Zhang bj++; 2480f4c0e9e4SHong Zhang } 2481f4c0e9e4SHong Zhang } 2482f4c0e9e4SHong Zhang 2483f4c0e9e4SHong Zhang /* send values to its owners */ 2484f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2485f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2486ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 248756faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2488ca54ac64SHong Zhang } 2489f4c0e9e4SHong Zhang } 2490f4c0e9e4SHong Zhang 2491f4c0e9e4SHong Zhang /* receive values */ 2492ca54ac64SHong Zhang if (rank){ 2493f4c0e9e4SHong Zhang rvalues = work; 2494ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2495f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 249656faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2497f4c0e9e4SHong Zhang /* process values */ 2498f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2499ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2500f4c0e9e4SHong Zhang } 2501f4c0e9e4SHong Zhang } 2502ca54ac64SHong Zhang } 2503f4c0e9e4SHong Zhang 25041ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2505ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 250624d5174aSHong Zhang PetscFunctionReturn(0); 250724d5174aSHong Zhang } 25082798e883SHong Zhang 25092798e883SHong Zhang #undef __FUNCT__ 25102798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 25111302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25122798e883SHong Zhang { 25132798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2514dfbe8321SBarry Smith PetscErrorCode ierr; 2515521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2516efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2517ffe4fb16SHong Zhang Vec bb1; 2518ffe4fb16SHong Zhang 2519ffe4fb16SHong Zhang PetscFunctionBegin; 252077431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2521ffe4fb16SHong Zhang if (bs > 1) 2522ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2523ffe4fb16SHong Zhang 2524ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2525ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2526ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2527ffe4fb16SHong Zhang its--; 2528ffe4fb16SHong Zhang } 2529ffe4fb16SHong Zhang 2530ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2531ffe4fb16SHong Zhang while (its--){ 2532ffe4fb16SHong Zhang 2533ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2534ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang 2536ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25371ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25381ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25401ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2541ffe4fb16SHong Zhang 2542efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang 2544ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25451ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25461ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2547ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25481ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2549ffe4fb16SHong Zhang 2550ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25512dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2552ffe4fb16SHong Zhang 2553ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25541ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25551ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2557ffe4fb16SHong Zhang 2558ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2559ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2560ffe4fb16SHong Zhang 2561ffe4fb16SHong Zhang /* local diagonal sweep */ 2562ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2563ffe4fb16SHong Zhang } 2564ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2565ffe4fb16SHong Zhang } else { 2566ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2567ffe4fb16SHong Zhang } 2568ffe4fb16SHong Zhang PetscFunctionReturn(0); 2569ffe4fb16SHong Zhang } 2570ffe4fb16SHong Zhang 2571ffe4fb16SHong Zhang #undef __FUNCT__ 2572ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25731302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2574ffe4fb16SHong Zhang { 2575ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2576dfbe8321SBarry Smith PetscErrorCode ierr; 25772798e883SHong Zhang Vec lvec1,bb1; 25782798e883SHong Zhang 25792798e883SHong Zhang PetscFunctionBegin; 258077431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2581521d7252SBarry Smith if (matin->bs > 1) 25822798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25832798e883SHong Zhang 2584c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25852798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2586bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25872798e883SHong Zhang its--; 25882798e883SHong Zhang } 25892798e883SHong Zhang 25902798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25912798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25922798e883SHong Zhang while (its--){ 25932798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25942798e883SHong Zhang 25952798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25962798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2597efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25982798e883SHong Zhang 25992798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 26002798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 26012798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26022798e883SHong Zhang 26032798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2604efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26052798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26062798e883SHong Zhang 26072798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26082798e883SHong Zhang 2609c14dc6b6SHong Zhang /* diagonal sweep */ 2610bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26112798e883SHong Zhang } 26122798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26132798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2614c14dc6b6SHong Zhang } else { 2615c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2616c14dc6b6SHong Zhang } 26172798e883SHong Zhang PetscFunctionReturn(0); 26182798e883SHong Zhang } 26192798e883SHong Zhang 2620