xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision afebec48acb8b1040c5bfa54d0857ffcc0c220e6)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
13a30f8f8cSSatish Balay {
14f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
15dfbe8321SBarry Smith   PetscErrorCode ierr;
16a30f8f8cSSatish Balay 
17a30f8f8cSSatish Balay   PetscFunctionBegin;
18a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
20a30f8f8cSSatish Balay   PetscFunctionReturn(0);
21a30f8f8cSSatish Balay }
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
36d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
37a30f8f8cSSatish Balay   { \
38a30f8f8cSSatish Balay  \
39a30f8f8cSSatish Balay     brow = row/bs;  \
40a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
41a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
42a30f8f8cSSatish Balay     bcol = col/bs; \
43a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
44a30f8f8cSSatish Balay     low  = 0; high = nrow; \
45a30f8f8cSSatish Balay     while (high-low > 3) { \
46a30f8f8cSSatish Balay       t = (low+high)/2; \
47a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
48a30f8f8cSSatish Balay       else              low  = t; \
49a30f8f8cSSatish Balay     } \
50a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
51a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
52a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
53a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
54a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
55a30f8f8cSSatish Balay         else                    *bap  = value;  \
56a30f8f8cSSatish Balay         goto a_noinsert; \
57a30f8f8cSSatish Balay       } \
58a30f8f8cSSatish Balay     } \
59a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
60d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
61fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
62a30f8f8cSSatish Balay     N = nrow++ - 1;  \
63a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
64a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
65a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
66a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
67a30f8f8cSSatish Balay     } \
68a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
69a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
70a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
71e56f5c9eSBarry Smith     A->nonzerostate++;\
72a30f8f8cSSatish Balay a_noinsert:; \
73a30f8f8cSSatish Balay     ailen[brow] = nrow; \
74a30f8f8cSSatish Balay   }
75e5e170daSBarry Smith 
76d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
77a30f8f8cSSatish Balay   { \
78a30f8f8cSSatish Balay     brow = row/bs;  \
79a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
80a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
81a30f8f8cSSatish Balay     bcol = col/bs; \
82a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
83a30f8f8cSSatish Balay     low  = 0; high = nrow; \
84a30f8f8cSSatish Balay     while (high-low > 3) { \
85a30f8f8cSSatish Balay       t = (low+high)/2; \
86a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
87a30f8f8cSSatish Balay       else              low  = t; \
88a30f8f8cSSatish Balay     } \
89a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
90a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
91a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
92a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
93a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
94a30f8f8cSSatish Balay         else                    *bap  = value;  \
95a30f8f8cSSatish Balay         goto b_noinsert; \
96a30f8f8cSSatish Balay       } \
97a30f8f8cSSatish Balay     } \
98a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
99d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
100fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
101a30f8f8cSSatish Balay     N = nrow++ - 1;  \
102a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
103a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
104a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
105a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
106a30f8f8cSSatish Balay     } \
107a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
108a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
109a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
110e56f5c9eSBarry Smith     B->nonzerostate++;\
111a30f8f8cSSatish Balay b_noinsert:; \
112a30f8f8cSSatish Balay     bilen[brow] = nrow; \
113a30f8f8cSSatish Balay   }
114a30f8f8cSSatish Balay 
115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
116a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
117a30f8f8cSSatish Balay */
1184a2ae208SSatish Balay #undef __FUNCT__
119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
121a30f8f8cSSatish Balay {
122a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
123a30f8f8cSSatish Balay   MatScalar      value;
124ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
125dfbe8321SBarry Smith   PetscErrorCode ierr;
1261302d50aSBarry Smith   PetscInt       i,j,row,col;
127d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
128d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
129d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   /* Some Variables required in the macro */
132a30f8f8cSSatish Balay   Mat          A     = baij->A;
133a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1341302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
135a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
136a30f8f8cSSatish Balay 
137a30f8f8cSSatish Balay   Mat         B     = baij->B;
138a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1391302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
140a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
141a30f8f8cSSatish Balay 
1421302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1431302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
144a30f8f8cSSatish Balay   MatScalar *ap,*bap;
145a30f8f8cSSatish Balay 
146a30f8f8cSSatish Balay   /* for stash */
1470298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1480298fd71SBarry Smith   MatScalar *v_loc = NULL;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   PetscFunctionBegin;
151a30f8f8cSSatish Balay   if (!baij->donotstash) {
15259ffdab8SBarry Smith     if (n > baij->n_loc) {
15359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
155785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
156785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15726fbe8dcSKarl Rupp 
15859ffdab8SBarry Smith       baij->n_loc = n;
15959ffdab8SBarry Smith     }
16059ffdab8SBarry Smith     in_loc = baij->in_loc;
16159ffdab8SBarry Smith     v_loc  = baij->v_loc;
162a30f8f8cSSatish Balay   }
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
165a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
167e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
168a30f8f8cSSatish Balay #endif
169a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
170a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
171a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
17201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17301b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17526fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17601b2bd88SHong Zhang         }
177a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
178a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
179a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
180a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
181db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
182db4deed7SKarl Rupp           else             value = v[i+j*m];
183d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
184a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
185a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
187cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
188a30f8f8cSSatish Balay #endif
189a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
190a30f8f8cSSatish Balay           if (mat->was_assembled) {
191a30f8f8cSSatish Balay             if (!baij->colmap) {
192ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
193a30f8f8cSSatish Balay             }
194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
195a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19671730473SSatish Balay             col  = col - 1;
197a30f8f8cSSatish Balay #else
19871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
199a30f8f8cSSatish Balay #endif
200a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
201ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
202a30f8f8cSSatish Balay               col  =  in[j];
203a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
204a30f8f8cSSatish Balay               B    = baij->B;
205a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
206a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
207a30f8f8cSSatish Balay               ba   = b->a;
20871730473SSatish Balay             } else col += in[j]%bs;
209a30f8f8cSSatish Balay           } else col = in[j];
210db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
211db4deed7SKarl Rupp           else             value = v[i+j*m];
212d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
213a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
214a30f8f8cSSatish Balay         }
215a30f8f8cSSatish Balay       }
216a30f8f8cSSatish Balay     } else {  /* off processor entry */
2174cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
218a30f8f8cSSatish Balay       if (!baij->donotstash) {
2195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
220a30f8f8cSSatish Balay         n_loc          = 0;
221a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
222f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
223a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
224a30f8f8cSSatish Balay           if (roworiented) {
225a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
226a30f8f8cSSatish Balay           } else {
227a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
228a30f8f8cSSatish Balay           }
229a30f8f8cSSatish Balay           n_loc++;
230a30f8f8cSSatish Balay         }
231b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     }
234a30f8f8cSSatish Balay   }
235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
236a30f8f8cSSatish Balay }
237a30f8f8cSSatish Balay 
2384a2ae208SSatish Balay #undef __FUNCT__
23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined"
24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
24136bd2089SBarry Smith {
24236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
24336bd2089SBarry Smith   PetscErrorCode    ierr;
24436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
24536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
24636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
24736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
24836bd2089SBarry Smith   const PetscScalar *value     = v;
24936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
25036bd2089SBarry Smith 
25136bd2089SBarry Smith   PetscFunctionBegin;
25236bd2089SBarry Smith   if (col < row) {
25336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
25436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
25536bd2089SBarry Smith   }
25636bd2089SBarry Smith   rp   = aj + ai[row];
25736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
25836bd2089SBarry Smith   rmax = imax[row];
25936bd2089SBarry Smith   nrow = ailen[row];
26036bd2089SBarry Smith   value = v;
26136bd2089SBarry Smith   low   = 0;
26236bd2089SBarry Smith   high  = nrow;
26336bd2089SBarry Smith 
26436bd2089SBarry Smith   while (high-low > 7) {
26536bd2089SBarry Smith     t = (low+high)/2;
26636bd2089SBarry Smith     if (rp[t] > col) high = t;
26736bd2089SBarry Smith     else             low  = t;
26836bd2089SBarry Smith   }
26936bd2089SBarry Smith   for (i=low; i<high; i++) {
27036bd2089SBarry Smith     if (rp[i] > col) break;
27136bd2089SBarry Smith     if (rp[i] == col) {
27236bd2089SBarry Smith       bap = ap +  bs2*i;
27336bd2089SBarry Smith       if (roworiented) {
27436bd2089SBarry Smith         if (is == ADD_VALUES) {
27536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
27636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
27736bd2089SBarry Smith               bap[jj] += *value++;
27836bd2089SBarry Smith             }
27936bd2089SBarry Smith           }
28036bd2089SBarry Smith         } else {
28136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
28236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
28336bd2089SBarry Smith               bap[jj] = *value++;
28436bd2089SBarry Smith             }
28536bd2089SBarry Smith           }
28636bd2089SBarry Smith         }
28736bd2089SBarry Smith       } else {
28836bd2089SBarry Smith         if (is == ADD_VALUES) {
28936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29136bd2089SBarry Smith               *bap++ += *value++;
29236bd2089SBarry Smith             }
29336bd2089SBarry Smith           }
29436bd2089SBarry Smith         } else {
29536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29736bd2089SBarry Smith               *bap++  = *value++;
29836bd2089SBarry Smith             }
29936bd2089SBarry Smith           }
30036bd2089SBarry Smith         }
30136bd2089SBarry Smith       }
30236bd2089SBarry Smith       goto noinsert2;
30336bd2089SBarry Smith     }
30436bd2089SBarry Smith   }
30536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
30636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
30736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
30836bd2089SBarry Smith   N = nrow++ - 1; high++;
30936bd2089SBarry Smith   /* shift up all the later entries in this row */
31036bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
31136bd2089SBarry Smith     rp[ii+1] = rp[ii];
31236bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
31336bd2089SBarry Smith   }
31436bd2089SBarry Smith   if (N >= i) {
31536bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
31636bd2089SBarry Smith   }
31736bd2089SBarry Smith   rp[i] = col;
31836bd2089SBarry Smith   bap   = ap +  bs2*i;
31936bd2089SBarry Smith   if (roworiented) {
32036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32136bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
32236bd2089SBarry Smith         bap[jj] = *value++;
32336bd2089SBarry Smith       }
32436bd2089SBarry Smith     }
32536bd2089SBarry Smith   } else {
32636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32736bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
32836bd2089SBarry Smith         *bap++ = *value++;
32936bd2089SBarry Smith       }
33036bd2089SBarry Smith     }
33136bd2089SBarry Smith   }
33236bd2089SBarry Smith   noinsert2:;
33336bd2089SBarry Smith   ailen[row] = nrow;
33436bd2089SBarry Smith   PetscFunctionReturn(0);
33536bd2089SBarry Smith }
33636bd2089SBarry Smith 
33736bd2089SBarry Smith #undef __FUNCT__
33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined"
33936bd2089SBarry Smith /*
34036bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
34136bd2089SBarry Smith */
34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34336bd2089SBarry Smith {
34436bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
34536bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34636bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
34736bd2089SBarry Smith   PetscErrorCode    ierr;
34836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
35036bd2089SBarry Smith   const PetscScalar *value     = v;
35136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35236bd2089SBarry Smith 
35336bd2089SBarry Smith   PetscFunctionBegin;
35436bd2089SBarry Smith   rp   = aj + ai[row];
35536bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35636bd2089SBarry Smith   rmax = imax[row];
35736bd2089SBarry Smith   nrow = ailen[row];
35836bd2089SBarry Smith   low  = 0;
35936bd2089SBarry Smith   high = nrow;
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   while (high-low > 7) {
36236bd2089SBarry Smith     t = (low+high)/2;
36336bd2089SBarry Smith     if (rp[t] > col) high = t;
36436bd2089SBarry Smith     else             low  = t;
36536bd2089SBarry Smith   }
36636bd2089SBarry Smith   for (i=low; i<high; i++) {
36736bd2089SBarry Smith     if (rp[i] > col) break;
36836bd2089SBarry Smith     if (rp[i] == col) {
36936bd2089SBarry Smith       bap = ap +  bs2*i;
37036bd2089SBarry Smith       if (roworiented) {
37136bd2089SBarry Smith         if (is == ADD_VALUES) {
37236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37436bd2089SBarry Smith               bap[jj] += *value++;
37536bd2089SBarry Smith             }
37636bd2089SBarry Smith           }
37736bd2089SBarry Smith         } else {
37836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38036bd2089SBarry Smith               bap[jj] = *value++;
38136bd2089SBarry Smith             }
38236bd2089SBarry Smith           }
38336bd2089SBarry Smith         }
38436bd2089SBarry Smith       } else {
38536bd2089SBarry Smith         if (is == ADD_VALUES) {
38636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
38736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38836bd2089SBarry Smith               bap[jj] += value[jj];
38936bd2089SBarry Smith             }
39036bd2089SBarry Smith             bap += bs;
39136bd2089SBarry Smith           }
39236bd2089SBarry Smith         } else {
39336bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
39436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39536bd2089SBarry Smith               bap[jj]  = value[jj];
39636bd2089SBarry Smith             }
39736bd2089SBarry Smith             bap += bs;
39836bd2089SBarry Smith           }
39936bd2089SBarry Smith         }
40036bd2089SBarry Smith       }
40136bd2089SBarry Smith       goto noinsert2;
40236bd2089SBarry Smith     }
40336bd2089SBarry Smith   }
40436bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40536bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
40636bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40736bd2089SBarry Smith   N = nrow++ - 1; high++;
40836bd2089SBarry Smith   /* shift up all the later entries in this row */
40936bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
41036bd2089SBarry Smith     rp[ii+1] = rp[ii];
41136bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
41236bd2089SBarry Smith   }
41336bd2089SBarry Smith   if (N >= i) {
41436bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
41536bd2089SBarry Smith   }
41636bd2089SBarry Smith   rp[i] = col;
41736bd2089SBarry Smith   bap   = ap +  bs2*i;
41836bd2089SBarry Smith   if (roworiented) {
41936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
42136bd2089SBarry Smith         bap[jj] = *value++;
42236bd2089SBarry Smith       }
42336bd2089SBarry Smith     }
42436bd2089SBarry Smith   } else {
42536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42736bd2089SBarry Smith         *bap++ = *value++;
42836bd2089SBarry Smith       }
42936bd2089SBarry Smith     }
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   noinsert2:;
43236bd2089SBarry Smith   ailen[row] = nrow;
43336bd2089SBarry Smith   PetscFunctionReturn(0);
43436bd2089SBarry Smith }
43536bd2089SBarry Smith 
43636bd2089SBarry Smith #undef __FUNCT__
437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
43836bd2089SBarry Smith /*
43936bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
44036bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
44136bd2089SBarry Smith */
442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
443a30f8f8cSSatish Balay {
4440880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
445f15d580aSBarry Smith   const MatScalar *value;
446f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
447ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
448dfbe8321SBarry Smith   PetscErrorCode  ierr;
449899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
450899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
451d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
4520880e062SHong Zhang 
453a30f8f8cSSatish Balay   PetscFunctionBegin;
4540880e062SHong Zhang   if (!barray) {
455785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
4560880e062SHong Zhang     baij->barray = barray;
4570880e062SHong Zhang   }
4580880e062SHong Zhang 
4590880e062SHong Zhang   if (roworiented) {
4600880e062SHong Zhang     stepval = (n-1)*bs;
4610880e062SHong Zhang   } else {
4620880e062SHong Zhang     stepval = (m-1)*bs;
4630880e062SHong Zhang   }
4640880e062SHong Zhang   for (i=0; i<m; i++) {
4650880e062SHong Zhang     if (im[i] < 0) continue;
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
4680880e062SHong Zhang #endif
4690880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4700880e062SHong Zhang       row = im[i] - rstart;
4710880e062SHong Zhang       for (j=0; j<n; j++) {
472f3f98c53SJed Brown         if (im[i] > in[j]) {
473f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
474e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
475f3f98c53SJed Brown         }
4760880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4770880e062SHong Zhang         if ((roworiented) && (n == 1)) {
478f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4790880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
480f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4810880e062SHong Zhang         } else { /* Here a copy is required */
4820880e062SHong Zhang           if (roworiented) {
4830880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4840880e062SHong Zhang           } else {
4850880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4860880e062SHong Zhang           }
4870880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4880880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4890880e062SHong Zhang               *barray++ = *value++;
4900880e062SHong Zhang             }
4910880e062SHong Zhang           }
4920880e062SHong Zhang           barray -=bs2;
4930880e062SHong Zhang         }
4940880e062SHong Zhang 
4950880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
4960880e062SHong Zhang           col  = in[j] - cstart;
49736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
49826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
500bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5010880e062SHong Zhang #endif
5020880e062SHong Zhang         else {
5030880e062SHong Zhang           if (mat->was_assembled) {
5040880e062SHong Zhang             if (!baij->colmap) {
505ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5060880e062SHong Zhang             }
5070880e062SHong Zhang 
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5101302d50aSBarry Smith             { PetscInt data;
5110880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
512e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5130880e062SHong Zhang             }
5140880e062SHong Zhang #else
515e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5160880e062SHong Zhang #endif
5170880e062SHong Zhang #endif
5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5190880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5200880e062SHong Zhang             col  = (col - 1)/bs;
5210880e062SHong Zhang #else
5220880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5230880e062SHong Zhang #endif
5240880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
525ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5260880e062SHong Zhang               col  = in[j];
5270880e062SHong Zhang             }
52826fbe8dcSKarl Rupp           } else col = in[j];
52936bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5300880e062SHong Zhang         }
5310880e062SHong Zhang       }
5320880e062SHong Zhang     } else {
533bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
5340880e062SHong Zhang       if (!baij->donotstash) {
5350880e062SHong Zhang         if (roworiented) {
5360880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5370880e062SHong Zhang         } else {
5380880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5390880e062SHong Zhang         }
5400880e062SHong Zhang       }
5410880e062SHong Zhang     }
5420880e062SHong Zhang   }
5430880e062SHong Zhang   PetscFunctionReturn(0);
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
553d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
558e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
563e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
565a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data--;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
587a30f8f8cSSatish Balay }
588a30f8f8cSSatish Balay 
5894a2ae208SSatish Balay #undef __FUNCT__
5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
592a30f8f8cSSatish Balay {
593a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
594dfbe8321SBarry Smith   PetscErrorCode ierr;
595a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
596a30f8f8cSSatish Balay 
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay   if (baij->size == 1) {
599a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   } else {
601a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
602785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
603a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
604a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
605a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
607b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6088f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
609a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6100b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6110b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6120b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6130b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
614899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
615d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6160b8dc8d2SHong Zhang       MatScalar    *v;
6170b8dc8d2SHong Zhang 
618dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
619d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6200b8dc8d2SHong Zhang       /* Amat */
6210b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6220b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6230b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6240b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6250b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6260b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6270b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6280b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6290b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6300b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6310b8dc8d2SHong Zhang               /* non-diagonal block */
6320b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6330b8dc8d2SHong Zhang             }
6340b8dc8d2SHong Zhang           }
6350b8dc8d2SHong Zhang         }
6360b8dc8d2SHong Zhang       }
6370b8dc8d2SHong Zhang       /* Bmat */
6380b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
6390b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6400b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6410b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
6420b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6430b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
6440b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6450b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6460b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6470b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6480b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6490b8dc8d2SHong Zhang             }
6500b8dc8d2SHong Zhang           }
6510b8dc8d2SHong Zhang         }
6520b8dc8d2SHong Zhang       }
653b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6540b8dc8d2SHong Zhang       *norm = 0.0;
655d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
6560b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6570b8dc8d2SHong Zhang       }
65874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
659f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
660a30f8f8cSSatish Balay   }
661a30f8f8cSSatish Balay   PetscFunctionReturn(0);
662a30f8f8cSSatish Balay }
663a30f8f8cSSatish Balay 
6644a2ae208SSatish Balay #undef __FUNCT__
6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
667a30f8f8cSSatish Balay {
668a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
669dfbe8321SBarry Smith   PetscErrorCode ierr;
6701302d50aSBarry Smith   PetscInt       nstash,reallocs;
671a30f8f8cSSatish Balay 
672a30f8f8cSSatish Balay   PetscFunctionBegin;
67326fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
674a30f8f8cSSatish Balay 
675d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
6761e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
677a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6781e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
679a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6801e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
681a30f8f8cSSatish Balay   PetscFunctionReturn(0);
682a30f8f8cSSatish Balay }
683a30f8f8cSSatish Balay 
6844a2ae208SSatish Balay #undef __FUNCT__
6854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
686dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
687a30f8f8cSSatish Balay {
688a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
689a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
6906849ba73SBarry Smith   PetscErrorCode ierr;
69113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
692e44c0bd4SBarry Smith   PetscInt       *row,*col;
693ace3abfcSBarry Smith   PetscBool      other_disassembled;
69413f74950SBarry Smith   PetscMPIInt    n;
695ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
696a30f8f8cSSatish Balay   MatScalar      *val;
697a30f8f8cSSatish Balay 
69891c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
699a30f8f8cSSatish Balay   PetscFunctionBegin;
7004cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
701a30f8f8cSSatish Balay     while (1) {
702a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
703a30f8f8cSSatish Balay       if (!flg) break;
704a30f8f8cSSatish Balay 
705a30f8f8cSSatish Balay       for (i=0; i<n;) {
706a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
70726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
70826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
70926fbe8dcSKarl Rupp         }
710a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
711a30f8f8cSSatish Balay         else       ncols = n-i;
712a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7134b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
714a30f8f8cSSatish Balay         i    = j;
715a30f8f8cSSatish Balay       }
716a30f8f8cSSatish Balay     }
717a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
718a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
719a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
720a30f8f8cSSatish Balay        restore the original flags */
721a30f8f8cSSatish Balay     r1 = baij->roworiented;
722a30f8f8cSSatish Balay     r2 = a->roworiented;
72391c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
72426fbe8dcSKarl Rupp 
725a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
726a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
72726fbe8dcSKarl Rupp 
72891c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
729a30f8f8cSSatish Balay     while (1) {
730a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
731a30f8f8cSSatish Balay       if (!flg) break;
732a30f8f8cSSatish Balay 
733a30f8f8cSSatish Balay       for (i=0; i<n;) {
734a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
73526fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
73626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
73726fbe8dcSKarl Rupp         }
738a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
739a30f8f8cSSatish Balay         else       ncols = n-i;
7404b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
741a30f8f8cSSatish Balay         i    = j;
742a30f8f8cSSatish Balay       }
743a30f8f8cSSatish Balay     }
744a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
74526fbe8dcSKarl Rupp 
746a30f8f8cSSatish Balay     baij->roworiented = r1;
747a30f8f8cSSatish Balay     a->roworiented    = r2;
74826fbe8dcSKarl Rupp 
74991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
750a30f8f8cSSatish Balay   }
751a30f8f8cSSatish Balay 
752a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
754a30f8f8cSSatish Balay 
755a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
756a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
757a30f8f8cSSatish Balay   /*
758a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
759a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
760a30f8f8cSSatish Balay   */
761a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
762b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
763a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
764ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
765a30f8f8cSSatish Balay     }
766a30f8f8cSSatish Balay   }
767a30f8f8cSSatish Balay 
768a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
76940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
770a30f8f8cSSatish Balay   }
771a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
772a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
773a30f8f8cSSatish Balay 
77474ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77526fbe8dcSKarl Rupp 
776a30f8f8cSSatish Balay   baij->rowvalues = 0;
7774f9cfa9eSBarry Smith 
7784f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
7794f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
780e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
781b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
782e56f5c9eSBarry Smith   }
783a30f8f8cSSatish Balay   PetscFunctionReturn(0);
784a30f8f8cSSatish Balay }
785a30f8f8cSSatish Balay 
786383922c3SLisandro Dalcin extern PetscErrorCode MatView_SeqSBAIJ(Mat,PetscViewer);
787dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
7889804daf3SBarry Smith #include <petscdraw.h>
7894a2ae208SSatish Balay #undef __FUNCT__
7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7916849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
792a30f8f8cSSatish Balay {
793a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
794dfbe8321SBarry Smith   PetscErrorCode    ierr;
795d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
7967da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
797ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
798b0a32e0cSBarry Smith   PetscViewer       sviewer;
799f3ef73ceSBarry Smith   PetscViewerFormat format;
800a30f8f8cSSatish Balay 
801a30f8f8cSSatish Balay   PetscFunctionBegin;
802251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
803251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
80432077d6dSBarry Smith   if (iascii) {
805b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
806456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
807a30f8f8cSSatish Balay       MatInfo info;
808ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
809a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8101575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
8117b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
812a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
813e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
814a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
815e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
816b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8171575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
81807d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
819a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
820a30f8f8cSSatish Balay       PetscFunctionReturn(0);
821fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
82277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
823a30f8f8cSSatish Balay       PetscFunctionReturn(0);
824c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
825c1490034SHong Zhang       PetscFunctionReturn(0);
826a30f8f8cSSatish Balay     }
827a30f8f8cSSatish Balay   }
828a30f8f8cSSatish Balay 
829a30f8f8cSSatish Balay   if (isdraw) {
830b0a32e0cSBarry Smith     PetscDraw draw;
831ace3abfcSBarry Smith     PetscBool isnull;
832b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
83345f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
83445f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
835a30f8f8cSSatish Balay   }
836a30f8f8cSSatish Balay 
8377da1fb6eSBarry Smith   {
838a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
839a30f8f8cSSatish Balay     Mat          A;
84065d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84165d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
842d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
843a30f8f8cSSatish Balay     MatScalar    *a;
8443e219373SBarry Smith     const char   *matname;
845a30f8f8cSSatish Balay 
846f204ca49SKris Buschelman     /* Should this be the same type as mat? */
847ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
848a30f8f8cSSatish Balay     if (!rank) {
849f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
850a30f8f8cSSatish Balay     } else {
851f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
852a30f8f8cSSatish Balay     }
853f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
8540298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
8552b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
8563bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
857a30f8f8cSSatish Balay 
858a30f8f8cSSatish Balay     /* copy over the A part */
85965d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
860a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
861785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
862a30f8f8cSSatish Balay 
863a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
864e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
86526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
866a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
867e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
868a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
869dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
87026fbe8dcSKarl Rupp           col++;
87126fbe8dcSKarl Rupp           a += bs;
872a30f8f8cSSatish Balay         }
873a30f8f8cSSatish Balay       }
874a30f8f8cSSatish Balay     }
875a30f8f8cSSatish Balay     /* copy over the B part */
87665d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
87765d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
878a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
879e9f7bc9eSHong Zhang 
880e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
88126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
882a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
883a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
884a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
885799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
88626fbe8dcSKarl Rupp           col++;
88726fbe8dcSKarl Rupp           a += bs;
888a30f8f8cSSatish Balay         }
889a30f8f8cSSatish Balay       }
890a30f8f8cSSatish Balay     }
891a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
892a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
893a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
894a30f8f8cSSatish Balay     /*
895a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
896b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
897a30f8f8cSSatish Balay     */
8983f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
899ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9003e219373SBarry Smith     if (!rank) {
901ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
902383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
903a30f8f8cSSatish Balay     }
9043f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9051575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9066bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
907a30f8f8cSSatish Balay   }
908a30f8f8cSSatish Balay   PetscFunctionReturn(0);
909a30f8f8cSSatish Balay }
910a30f8f8cSSatish Balay 
9114a2ae208SSatish Balay #undef __FUNCT__
9124a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
913dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
914a30f8f8cSSatish Balay {
915dfbe8321SBarry Smith   PetscErrorCode ierr;
916ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
917a30f8f8cSSatish Balay 
918a30f8f8cSSatish Balay   PetscFunctionBegin;
919251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
920251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
921251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
922251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
92332077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
924a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
925a30f8f8cSSatish Balay   }
926a30f8f8cSSatish Balay   PetscFunctionReturn(0);
927a30f8f8cSSatish Balay }
928a30f8f8cSSatish Balay 
9294a2ae208SSatish Balay #undef __FUNCT__
9304a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
931dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
932a30f8f8cSSatish Balay {
933a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
934dfbe8321SBarry Smith   PetscErrorCode ierr;
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay   PetscFunctionBegin;
937a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
938d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
939a30f8f8cSSatish Balay #endif
940a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
941a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
9426bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
9436bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
944a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
9456bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
946a30f8f8cSSatish Balay #else
94705b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
948a30f8f8cSSatish Balay #endif
94905b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
9506bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
9516bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
9526bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
9536bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
9546bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
9556bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
9566bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
9576bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
9585755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
95905b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
96005b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
9616bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
9626bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
9636bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
964ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
96505b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
966a30f8f8cSSatish Balay #endif
96759ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
96859ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
969899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
970bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
971901853e0SKris Buschelman 
972dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
973bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
974bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
975bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
976bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
977bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
9786214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
9796214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
9806214f412SHong Zhang #endif
981a30f8f8cSSatish Balay   PetscFunctionReturn(0);
982a30f8f8cSSatish Balay }
983a30f8f8cSSatish Balay 
9844a2ae208SSatish Balay #undef __FUNCT__
985547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
986547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
987547795f9SHong Zhang {
988547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
989547795f9SHong Zhang   PetscErrorCode    ierr;
990547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
9916de40e93SBarry Smith   PetscScalar       *from;
9926de40e93SBarry Smith   const PetscScalar *x;
993547795f9SHong Zhang 
994547795f9SHong Zhang   PetscFunctionBegin;
995547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
996e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
997547795f9SHong Zhang 
998547795f9SHong Zhang   /* diagonal part */
999547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1000547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1001547795f9SHong Zhang 
1002547795f9SHong Zhang   /* subdiagonal part */
1003547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1004547795f9SHong Zhang 
1005547795f9SHong Zhang   /* copy x into the vec slvec0 */
1006547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10076de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1008547795f9SHong Zhang 
1009547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1010547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
10116de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1012547795f9SHong Zhang 
1013547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1014547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1015547795f9SHong Zhang   /* supperdiagonal part */
1016547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1017547795f9SHong Zhang   PetscFunctionReturn(0);
1018547795f9SHong Zhang }
1019547795f9SHong Zhang 
1020547795f9SHong Zhang #undef __FUNCT__
1021a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
1022dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1023a9d4b620SHong Zhang {
1024a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1025dfbe8321SBarry Smith   PetscErrorCode    ierr;
1026d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1027d9ca1df4SBarry Smith   PetscScalar       *from;
1028d9ca1df4SBarry Smith   const PetscScalar *x;
1029a9d4b620SHong Zhang 
1030a9d4b620SHong Zhang   PetscFunctionBegin;
1031a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1032e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1033a9d4b620SHong Zhang 
1034a9d4b620SHong Zhang   /* diagonal part */
1035a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1036fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1037a9d4b620SHong Zhang 
1038a9d4b620SHong Zhang   /* subdiagonal part */
1039a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1040fc165ae2SBarry Smith 
1041a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10421ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1043d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1044a9d4b620SHong Zhang 
1045fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1046fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1047d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1048fc165ae2SBarry Smith 
1049fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1050ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1051a9d4b620SHong Zhang   /* supperdiagonal part */
1052a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1053a9d4b620SHong Zhang   PetscFunctionReturn(0);
1054a9d4b620SHong Zhang }
1055a9d4b620SHong Zhang 
1056a9d4b620SHong Zhang #undef __FUNCT__
105740781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
1058dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1059a30f8f8cSSatish Balay {
1060a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1061dfbe8321SBarry Smith   PetscErrorCode ierr;
10621302d50aSBarry Smith   PetscInt       nt;
1063a30f8f8cSSatish Balay 
1064a30f8f8cSSatish Balay   PetscFunctionBegin;
1065a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1066e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1067e7e72b3dSBarry Smith 
1068a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1069e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
107065d70643SHong Zhang 
1071ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1072b941877fSHong Zhang   /* do diagonal part */
1073b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1074b941877fSHong Zhang   /* do supperdiagonal part */
1075ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1076b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1077b941877fSHong Zhang   /* do subdiagonal part */
1078b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1079ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1080ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1081a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1082a30f8f8cSSatish Balay }
1083a30f8f8cSSatish Balay 
10844a2ae208SSatish Balay #undef __FUNCT__
10854a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1086dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1087a30f8f8cSSatish Balay {
1088de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1089dfbe8321SBarry Smith   PetscErrorCode    ierr;
1090d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1091d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1092d9ca1df4SBarry Smith   const PetscScalar *x;
1093a9d4b620SHong Zhang 
1094a9d4b620SHong Zhang   PetscFunctionBegin;
1095a9d4b620SHong Zhang   /*
1096ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
10970ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1098a9d4b620SHong Zhang   */
1099a9d4b620SHong Zhang   /* diagonal part */
1100a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11012dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1102a9d4b620SHong Zhang 
1103a9d4b620SHong Zhang   /* subdiagonal part */
1104a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1105a9d4b620SHong Zhang 
1106a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11071ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1108d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1109a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
11101ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1111a9d4b620SHong Zhang 
1112ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1113d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1114ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1115a9d4b620SHong Zhang 
1116a9d4b620SHong Zhang   /* supperdiagonal part */
1117a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1118a9d4b620SHong Zhang   PetscFunctionReturn(0);
1119a9d4b620SHong Zhang }
1120a9d4b620SHong Zhang 
1121a9d4b620SHong Zhang #undef __FUNCT__
1122a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1123dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1124a9d4b620SHong Zhang {
1125a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1126dfbe8321SBarry Smith   PetscErrorCode ierr;
1127a30f8f8cSSatish Balay 
1128a30f8f8cSSatish Balay   PetscFunctionBegin;
1129ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1130b941877fSHong Zhang   /* do diagonal part */
1131b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1132b941877fSHong Zhang   /* do supperdiagonal part */
1133ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1134de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1135de8b6608SHong Zhang 
1136b941877fSHong Zhang   /* do subdiagonal part */
1137a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1138ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1139ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1140a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1141a30f8f8cSSatish Balay }
1142a30f8f8cSSatish Balay 
1143a30f8f8cSSatish Balay /*
1144a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1145a30f8f8cSSatish Balay    diagonal block
1146a30f8f8cSSatish Balay */
11474a2ae208SSatish Balay #undef __FUNCT__
11484a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1149dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1150a30f8f8cSSatish Balay {
1151a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1152dfbe8321SBarry Smith   PetscErrorCode ierr;
1153a30f8f8cSSatish Balay 
1154a30f8f8cSSatish Balay   PetscFunctionBegin;
1155e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1156a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1157a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1158a30f8f8cSSatish Balay }
1159a30f8f8cSSatish Balay 
11604a2ae208SSatish Balay #undef __FUNCT__
11614a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1162f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1163a30f8f8cSSatish Balay {
1164a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1165dfbe8321SBarry Smith   PetscErrorCode ierr;
1166a30f8f8cSSatish Balay 
1167a30f8f8cSSatish Balay   PetscFunctionBegin;
1168f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1169f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1170a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1171a30f8f8cSSatish Balay }
1172a30f8f8cSSatish Balay 
11734a2ae208SSatish Balay #undef __FUNCT__
11744a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11751302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1176a30f8f8cSSatish Balay {
1177d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1178d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1179d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1180d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1181d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1182899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1183d0d4cfc2SHong Zhang 
1184a30f8f8cSSatish Balay   PetscFunctionBegin;
1185e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1186d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1187d0d4cfc2SHong Zhang 
1188d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1189d0d4cfc2SHong Zhang     /*
1190d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1191d0d4cfc2SHong Zhang     */
1192d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1193d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1194d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1195d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1196d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
119726fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1198d0d4cfc2SHong Zhang     }
1199dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1200d0d4cfc2SHong Zhang   }
1201d0d4cfc2SHong Zhang 
1202e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1203d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1204d0d4cfc2SHong Zhang 
1205d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1206d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1207d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1208d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1209d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1210d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1211d0d4cfc2SHong Zhang 
1212d0d4cfc2SHong Zhang   cmap = mat->garray;
1213d0d4cfc2SHong Zhang   if (v  || idx) {
1214d0d4cfc2SHong Zhang     if (nztot) {
1215d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1216d0d4cfc2SHong Zhang       PetscInt imark = -1;
1217d0d4cfc2SHong Zhang       if (v) {
1218d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1219d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1220d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1221d0d4cfc2SHong Zhang           else break;
1222d0d4cfc2SHong Zhang         }
1223d0d4cfc2SHong Zhang         imark = i;
1224d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1225d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1226d0d4cfc2SHong Zhang       }
1227d0d4cfc2SHong Zhang       if (idx) {
1228d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1229d0d4cfc2SHong Zhang         if (imark > -1) {
1230d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1231d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1232d0d4cfc2SHong Zhang           }
1233d0d4cfc2SHong Zhang         } else {
1234d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
123526fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1236d0d4cfc2SHong Zhang             else break;
1237d0d4cfc2SHong Zhang           }
1238d0d4cfc2SHong Zhang           imark = i;
1239d0d4cfc2SHong Zhang         }
1240d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1241d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1242d0d4cfc2SHong Zhang       }
1243d0d4cfc2SHong Zhang     } else {
1244d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1245d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1246d0d4cfc2SHong Zhang     }
1247d0d4cfc2SHong Zhang   }
1248d0d4cfc2SHong Zhang   *nz  = nztot;
1249d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1250d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1252a30f8f8cSSatish Balay }
1253a30f8f8cSSatish Balay 
12544a2ae208SSatish Balay #undef __FUNCT__
12554a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12561302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1257a30f8f8cSSatish Balay {
1258a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1259a30f8f8cSSatish Balay 
1260a30f8f8cSSatish Balay   PetscFunctionBegin;
1261e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1262a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1263a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1264a30f8f8cSSatish Balay }
1265a30f8f8cSSatish Balay 
12664a2ae208SSatish Balay #undef __FUNCT__
1267d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1268d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1269d0d4cfc2SHong Zhang {
1270d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1271d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1272d0d4cfc2SHong Zhang 
1273d0d4cfc2SHong Zhang   PetscFunctionBegin;
1274d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1275d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1276d0d4cfc2SHong Zhang }
1277d0d4cfc2SHong Zhang #undef __FUNCT__
1278d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1279d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1280d0d4cfc2SHong Zhang {
1281d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1282d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1283d0d4cfc2SHong Zhang 
1284d0d4cfc2SHong Zhang   PetscFunctionBegin;
1285d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1286d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1287d0d4cfc2SHong Zhang }
1288d0d4cfc2SHong Zhang 
1289d0d4cfc2SHong Zhang #undef __FUNCT__
129099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
129199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
129299cafbc1SBarry Smith {
129399cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
129499cafbc1SBarry Smith   PetscErrorCode ierr;
129599cafbc1SBarry Smith 
129699cafbc1SBarry Smith   PetscFunctionBegin;
129799cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
129899cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
129999cafbc1SBarry Smith   PetscFunctionReturn(0);
130099cafbc1SBarry Smith }
130199cafbc1SBarry Smith 
130299cafbc1SBarry Smith #undef __FUNCT__
130399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
130499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
130599cafbc1SBarry Smith {
130699cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
130799cafbc1SBarry Smith   PetscErrorCode ierr;
130899cafbc1SBarry Smith 
130999cafbc1SBarry Smith   PetscFunctionBegin;
131099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
131199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
131299cafbc1SBarry Smith   PetscFunctionReturn(0);
131399cafbc1SBarry Smith }
131499cafbc1SBarry Smith 
131536032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
131636032a97SHong Zhang    Input: isrow       - distributed(parallel),
131736032a97SHong Zhang           iscol_local - locally owned (seq)
131836032a97SHong Zhang */
131999cafbc1SBarry Smith #undef __FUNCT__
132036032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
132136032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13228f46ffcaSHong Zhang {
13238f46ffcaSHong Zhang   PetscErrorCode ierr;
13248f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13258f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
132636032a97SHong Zhang 
132736032a97SHong Zhang   PetscFunctionBegin;
13288f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13298f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13301098a8e8SHong Zhang   if (sz1 > sz2) {
13311098a8e8SHong Zhang     *flg = PETSC_FALSE;
13321098a8e8SHong Zhang     PetscFunctionReturn(0);
13331098a8e8SHong Zhang   }
13348f46ffcaSHong Zhang 
13358f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13368f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13378f46ffcaSHong Zhang 
13388f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13398f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
13408f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
13418f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
13428f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13438f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13448f46ffcaSHong Zhang 
13458f46ffcaSHong Zhang   nmatch=0;
13468f46ffcaSHong Zhang   k     = 0;
13478f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
13488f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
13498f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13508f46ffcaSHong Zhang         k = j; nmatch++;
13518f46ffcaSHong Zhang         break;
13528f46ffcaSHong Zhang       }
13538f46ffcaSHong Zhang     }
13548f46ffcaSHong Zhang   }
13558f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13568f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13578f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
13588f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
13591098a8e8SHong Zhang   if (nmatch < sz1) {
13601098a8e8SHong Zhang     *flg = PETSC_FALSE;
13611098a8e8SHong Zhang   } else {
13621098a8e8SHong Zhang     *flg = PETSC_TRUE;
13631098a8e8SHong Zhang   }
136436032a97SHong Zhang   PetscFunctionReturn(0);
13658f46ffcaSHong Zhang }
136636032a97SHong Zhang 
136736032a97SHong Zhang #undef __FUNCT__
136836032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
136936032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
137036032a97SHong Zhang {
137136032a97SHong Zhang   PetscErrorCode ierr;
137236032a97SHong Zhang   IS             iscol_local;
137336032a97SHong Zhang   PetscInt       csize;
137436032a97SHong Zhang   PetscBool      isequal;
137536032a97SHong Zhang 
137636032a97SHong Zhang   PetscFunctionBegin;
137736032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
137836032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
137936032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
138036032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
138136032a97SHong Zhang   } else {
138236032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
138336032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
138436032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
13858f46ffcaSHong Zhang   }
13868f46ffcaSHong Zhang 
13878f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
138836032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
13898f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
13908f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
13918f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
13928f46ffcaSHong Zhang   }
13938f46ffcaSHong Zhang   PetscFunctionReturn(0);
13948f46ffcaSHong Zhang }
13958f46ffcaSHong Zhang 
13968f46ffcaSHong Zhang #undef __FUNCT__
13974a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1398dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1399a30f8f8cSSatish Balay {
1400a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1401dfbe8321SBarry Smith   PetscErrorCode ierr;
1402a30f8f8cSSatish Balay 
1403a30f8f8cSSatish Balay   PetscFunctionBegin;
1404a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1405a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1406a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1407a30f8f8cSSatish Balay }
1408a30f8f8cSSatish Balay 
14094a2ae208SSatish Balay #undef __FUNCT__
14104a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1411dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1412a30f8f8cSSatish Balay {
1413a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1414a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1415dfbe8321SBarry Smith   PetscErrorCode ierr;
1416a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1417a30f8f8cSSatish Balay 
1418a30f8f8cSSatish Balay   PetscFunctionBegin;
1419d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142026fbe8dcSKarl Rupp 
1421a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
142226fbe8dcSKarl Rupp 
1423a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1424a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
142526fbe8dcSKarl Rupp 
1426a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
142726fbe8dcSKarl Rupp 
1428a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1429a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1430a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1431a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1432a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1433a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1434a30f8f8cSSatish Balay     info->memory       = isend[3];
1435a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1436a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1437b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
143826fbe8dcSKarl Rupp 
1439a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1440a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1441a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1442a30f8f8cSSatish Balay     info->memory       = irecv[3];
1443a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1444a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1445b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
144626fbe8dcSKarl Rupp 
1447a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1448a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1449a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1450a30f8f8cSSatish Balay     info->memory       = irecv[3];
1451a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1452f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1453a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1454a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1455a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1456a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1457a30f8f8cSSatish Balay }
1458a30f8f8cSSatish Balay 
14594a2ae208SSatish Balay #undef __FUNCT__
14604a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1461ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1462a30f8f8cSSatish Balay {
1463a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1464d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1465dfbe8321SBarry Smith   PetscErrorCode ierr;
1466a30f8f8cSSatish Balay 
1467a30f8f8cSSatish Balay   PetscFunctionBegin;
1468e98b92d7SKris Buschelman   switch (op) {
1469512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1470e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1472a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1473e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147443674050SBarry Smith     MatCheckPreallocated(A,1);
14754e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14764e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1477e98b92d7SKris Buschelman     break;
1478e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
147943674050SBarry Smith     MatCheckPreallocated(A,1);
14804e0d8c25SBarry Smith     a->roworiented = flg;
148126fbe8dcSKarl Rupp 
14824e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14834e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1484e98b92d7SKris Buschelman     break;
14854e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1486290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1487e98b92d7SKris Buschelman     break;
1488e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14894e0d8c25SBarry Smith     a->donotstash = flg;
1490e98b92d7SKris Buschelman     break;
1491e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
14924e0d8c25SBarry Smith     a->ht_flag = flg;
1493e98b92d7SKris Buschelman     break;
14949a4540c5SBarry Smith   case MAT_HERMITIAN:
149543674050SBarry Smith     MatCheckPreallocated(A,1);
1496e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1497eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
149826fbe8dcSKarl Rupp 
1499547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1500eeffb40dSHong Zhang     break;
1501ffa07934SHong Zhang   case MAT_SPD:
1502ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1503ffa07934SHong Zhang     A->spd     = flg;
1504ffa07934SHong Zhang     if (flg) {
1505ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1506ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1507ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1508ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1509ffa07934SHong Zhang     }
1510ffa07934SHong Zhang     break;
151177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
151243674050SBarry Smith     MatCheckPreallocated(A,1);
1513eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1514eeffb40dSHong Zhang     break;
151577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
151643674050SBarry Smith     MatCheckPreallocated(A,1);
1517eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1518eeffb40dSHong Zhang     break;
15199a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1520e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1521290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
152277e54ba9SKris Buschelman     break;
1523d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15244e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1525d0d4cfc2SHong Zhang     break;
1526d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15274e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1528d0d4cfc2SHong Zhang     break;
1529d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15304e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1531d0d4cfc2SHong Zhang     break;
1532e98b92d7SKris Buschelman   default:
1533e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1534a30f8f8cSSatish Balay   }
1535a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1536a30f8f8cSSatish Balay }
1537a30f8f8cSSatish Balay 
15384a2ae208SSatish Balay #undef __FUNCT__
15398115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1540fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1541a30f8f8cSSatish Balay {
1542dfbe8321SBarry Smith   PetscErrorCode ierr;
15436e111a19SKarl Rupp 
1544a30f8f8cSSatish Balay   PetscFunctionBegin;
1545815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1546999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1547fc4dec0aSBarry Smith   }
15488115998fSBarry Smith   PetscFunctionReturn(0);
1549a30f8f8cSSatish Balay }
1550a30f8f8cSSatish Balay 
15514a2ae208SSatish Balay #undef __FUNCT__
15524a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1553dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1554a30f8f8cSSatish Balay {
1555a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1556a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1557dfbe8321SBarry Smith   PetscErrorCode ierr;
15585e90f9d9SHong Zhang   PetscInt       nv,m,n;
1559ace3abfcSBarry Smith   PetscBool      flg;
1560a30f8f8cSSatish Balay 
1561a30f8f8cSSatish Balay   PetscFunctionBegin;
1562a30f8f8cSSatish Balay   if (ll != rr) {
1563b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1564e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1565a30f8f8cSSatish Balay   }
1566b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1567b3bf805bSHong Zhang 
15685e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1569e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1570b3bf805bSHong Zhang 
15715e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1572e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15735e90f9d9SHong Zhang 
1574ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15755e90f9d9SHong Zhang 
15765e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
15770298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
15785e90f9d9SHong Zhang 
15795e90f9d9SHong Zhang   /* scale the diagonal part */
1580a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1581a30f8f8cSSatish Balay 
15825e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1583ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15840298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1585a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1586a30f8f8cSSatish Balay }
1587a30f8f8cSSatish Balay 
15884a2ae208SSatish Balay #undef __FUNCT__
15894a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1590dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1591a30f8f8cSSatish Balay {
1592f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1593dfbe8321SBarry Smith   PetscErrorCode ierr;
1594a30f8f8cSSatish Balay 
1595a30f8f8cSSatish Balay   PetscFunctionBegin;
1596a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1597a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1598a30f8f8cSSatish Balay }
1599a30f8f8cSSatish Balay 
16006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1601a30f8f8cSSatish Balay 
16024a2ae208SSatish Balay #undef __FUNCT__
16034a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1604ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1605a30f8f8cSSatish Balay {
1606a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1607a30f8f8cSSatish Balay   Mat            a,b,c,d;
1608ace3abfcSBarry Smith   PetscBool      flg;
1609dfbe8321SBarry Smith   PetscErrorCode ierr;
1610a30f8f8cSSatish Balay 
1611a30f8f8cSSatish Balay   PetscFunctionBegin;
1612a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1613a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1614a30f8f8cSSatish Balay 
1615a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1616abc0a331SBarry Smith   if (flg) {
1617a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1618a30f8f8cSSatish Balay   }
1619b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1620a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1621a30f8f8cSSatish Balay }
1622a30f8f8cSSatish Balay 
16234a2ae208SSatish Balay #undef __FUNCT__
16243c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
16253c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16263c896bc6SHong Zhang {
16273c896bc6SHong Zhang   PetscErrorCode ierr;
16283c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
16293c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
16303c896bc6SHong Zhang 
16313c896bc6SHong Zhang   PetscFunctionBegin;
16323c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16333c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1634d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16353c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1636d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16373c896bc6SHong Zhang   } else {
16383c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16393c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16403c896bc6SHong Zhang   }
16413c896bc6SHong Zhang   PetscFunctionReturn(0);
16423c896bc6SHong Zhang }
16433c896bc6SHong Zhang 
16443c896bc6SHong Zhang #undef __FUNCT__
16454994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
16464994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1647273d9f13SBarry Smith {
1648dfbe8321SBarry Smith   PetscErrorCode ierr;
1649273d9f13SBarry Smith 
1650273d9f13SBarry Smith   PetscFunctionBegin;
1651535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1652273d9f13SBarry Smith   PetscFunctionReturn(0);
1653273d9f13SBarry Smith }
1654a5e6ed63SBarry Smith 
16554fe895cdSHong Zhang #undef __FUNCT__
16564fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
16574fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16584fe895cdSHong Zhang {
16594fe895cdSHong Zhang   PetscErrorCode ierr;
16604fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16614fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16624fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16634fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16644fe895cdSHong Zhang 
16654fe895cdSHong Zhang   PetscFunctionBegin;
16664fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16674fe895cdSHong Zhang     PetscScalar alpha = a;
16684fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16694fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1670c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
16718b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16724fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16734fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1674c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
16758b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1676a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1677ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1678ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1679ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1680ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
16814fe895cdSHong Zhang   } else {
16824de5dceeSHong Zhang     Mat      B;
16834de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
16844de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1685d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
16864de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
16874de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
16884de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
16894de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
16904de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
16914de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
16924de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
16934de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
16944de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
16954de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
16964de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
16974de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
169828be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
16994de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
17004de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1701d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17024de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17034fe895cdSHong Zhang   }
17044fe895cdSHong Zhang   PetscFunctionReturn(0);
17054fe895cdSHong Zhang }
17064fe895cdSHong Zhang 
1707a5e6ed63SBarry Smith #undef __FUNCT__
1708a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
17091302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1710a5e6ed63SBarry Smith {
17116849ba73SBarry Smith   PetscErrorCode ierr;
17121302d50aSBarry Smith   PetscInt       i;
1713*afebec48SHong Zhang   PetscBool      flg;
1714a5e6ed63SBarry Smith 
17156849ba73SBarry Smith   PetscFunctionBegin;
1716*afebec48SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1717a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1718a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1719*afebec48SHong Zhang     if (!flg) {
1720*afebec48SHong Zhang       Mat Bseq = *B[i];
1721*afebec48SHong Zhang       /* Bseq is non-symmetric SBAIJ matrix, only used internally by PETSc.
1722*afebec48SHong Zhang          Zero some ops' to avoid invalid usse */
1723*afebec48SHong Zhang       ierr = MatSetOption(Bseq,MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1724*afebec48SHong Zhang       Bseq->ops->mult                   = 0;
1725*afebec48SHong Zhang       Bseq->ops->multadd                = 0;
1726*afebec48SHong Zhang       Bseq->ops->multtranspose          = 0;
1727*afebec48SHong Zhang       Bseq->ops->multtransposeadd       = 0;
1728*afebec48SHong Zhang       Bseq->ops->lufactor               = 0;
1729*afebec48SHong Zhang       Bseq->ops->choleskyfactor         = 0;
1730*afebec48SHong Zhang       Bseq->ops->lufactorsymbolic       = 0;
1731*afebec48SHong Zhang       Bseq->ops->choleskyfactorsymbolic = 0;
1732*afebec48SHong Zhang       Bseq->ops->getinertia             = 0;
1733a5e6ed63SBarry Smith     }
17344dcd73b1SHong Zhang   }
1735a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1736a5e6ed63SBarry Smith }
1737a5e6ed63SBarry Smith 
17387d68702bSBarry Smith #undef __FUNCT__
17397d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ"
17407d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17417d68702bSBarry Smith {
17427d68702bSBarry Smith   PetscErrorCode ierr;
17437d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17446f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17457d68702bSBarry Smith 
17467d68702bSBarry Smith   PetscFunctionBegin;
17476f33a894SBarry Smith   if (!Y->preallocated) {
17487d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17496f33a894SBarry Smith   } else if (!aij->nz) {
1750b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17516f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1752b83222d8SBarry Smith     aij->nonew = nonew;
17537d68702bSBarry Smith   }
17547d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
17557d68702bSBarry Smith   PetscFunctionReturn(0);
17567d68702bSBarry Smith }
17577d68702bSBarry Smith 
17583b49f96aSBarry Smith #undef __FUNCT__
17593b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ"
17603b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
17613b49f96aSBarry Smith {
17623b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
17633b49f96aSBarry Smith   PetscErrorCode ierr;
17643b49f96aSBarry Smith 
17653b49f96aSBarry Smith   PetscFunctionBegin;
17663b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
17673b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
17683b49f96aSBarry Smith   if (d) {
17693b49f96aSBarry Smith     PetscInt rstart;
17703b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
17713b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
17723b49f96aSBarry Smith 
17733b49f96aSBarry Smith   }
17743b49f96aSBarry Smith   PetscFunctionReturn(0);
17753b49f96aSBarry Smith }
17763b49f96aSBarry Smith 
17773b49f96aSBarry Smith 
1778a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17793964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1780a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1781a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1782a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
178397304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1784431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1785431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1786a30f8f8cSSatish Balay                                        0,
1787a30f8f8cSSatish Balay                                        0,
1788a30f8f8cSSatish Balay                                        0,
178997304618SKris Buschelman                                /* 10*/ 0,
1790a30f8f8cSSatish Balay                                        0,
1791a30f8f8cSSatish Balay                                        0,
179241f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1793a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
179497304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1795a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1796a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1797a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1798a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
179997304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1800a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1801a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1802a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1803d519adbfSMatthew Knepley                                /* 24*/ 0,
1804a30f8f8cSSatish Balay                                        0,
1805a30f8f8cSSatish Balay                                        0,
1806a30f8f8cSSatish Balay                                        0,
1807a30f8f8cSSatish Balay                                        0,
18084994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1809b5df2d14SHong Zhang                                        0,
1810a30f8f8cSSatish Balay                                        0,
1811a30f8f8cSSatish Balay                                        0,
1812a30f8f8cSSatish Balay                                        0,
1813d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1814a30f8f8cSSatish Balay                                        0,
1815a30f8f8cSSatish Balay                                        0,
1816a30f8f8cSSatish Balay                                        0,
1817a30f8f8cSSatish Balay                                        0,
1818d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1819a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1820d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1821a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18223c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1823d519adbfSMatthew Knepley                                /* 44*/ 0,
1824a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18257d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1826a30f8f8cSSatish Balay                                        0,
1827a30f8f8cSSatish Balay                                        0,
1828f73d5cc4SBarry Smith                                /* 49*/ 0,
1829a30f8f8cSSatish Balay                                        0,
1830a30f8f8cSSatish Balay                                        0,
1831a30f8f8cSSatish Balay                                        0,
1832a30f8f8cSSatish Balay                                        0,
1833d519adbfSMatthew Knepley                                /* 54*/ 0,
1834a30f8f8cSSatish Balay                                        0,
1835a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1836a30f8f8cSSatish Balay                                        0,
1837a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18388f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1839a30f8f8cSSatish Balay                                        0,
1840a30f8f8cSSatish Balay                                        0,
1841357abbc8SBarry Smith                                        0,
184224d5174aSHong Zhang                                        0,
1843d519adbfSMatthew Knepley                                /* 64*/ 0,
184424d5174aSHong Zhang                                        0,
184524d5174aSHong Zhang                                        0,
184624d5174aSHong Zhang                                        0,
184724d5174aSHong Zhang                                        0,
1848d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
184924d5174aSHong Zhang                                        0,
185097304618SKris Buschelman                                        0,
185197304618SKris Buschelman                                        0,
185297304618SKris Buschelman                                        0,
1853d519adbfSMatthew Knepley                                /* 74*/ 0,
185497304618SKris Buschelman                                        0,
185597304618SKris Buschelman                                        0,
185697304618SKris Buschelman                                        0,
185797304618SKris Buschelman                                        0,
1858d519adbfSMatthew Knepley                                /* 79*/ 0,
185997304618SKris Buschelman                                        0,
186097304618SKris Buschelman                                        0,
186197304618SKris Buschelman                                        0,
18625bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1863d519adbfSMatthew Knepley                                /* 84*/ 0,
1864865e5f61SKris Buschelman                                        0,
1865865e5f61SKris Buschelman                                        0,
1866865e5f61SKris Buschelman                                        0,
1867865e5f61SKris Buschelman                                        0,
1868d519adbfSMatthew Knepley                                /* 89*/ 0,
1869865e5f61SKris Buschelman                                        0,
1870865e5f61SKris Buschelman                                        0,
1871865e5f61SKris Buschelman                                        0,
1872865e5f61SKris Buschelman                                        0,
1873d519adbfSMatthew Knepley                                /* 94*/ 0,
1874865e5f61SKris Buschelman                                        0,
1875865e5f61SKris Buschelman                                        0,
187699cafbc1SBarry Smith                                        0,
187799cafbc1SBarry Smith                                        0,
1878d519adbfSMatthew Knepley                                /* 99*/ 0,
187999cafbc1SBarry Smith                                        0,
188099cafbc1SBarry Smith                                        0,
188199cafbc1SBarry Smith                                        0,
188299cafbc1SBarry Smith                                        0,
1883d519adbfSMatthew Knepley                                /*104*/ 0,
188499cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1885d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1886d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
188795936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
188895936485SShri Abhyankar                                /*109*/ 0,
188995936485SShri Abhyankar                                        0,
189095936485SShri Abhyankar                                        0,
189195936485SShri Abhyankar                                        0,
18923b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
189395936485SShri Abhyankar                                /*114*/ 0,
189495936485SShri Abhyankar                                        0,
189595936485SShri Abhyankar                                        0,
189695936485SShri Abhyankar                                        0,
189795936485SShri Abhyankar                                        0,
189895936485SShri Abhyankar                                /*119*/ 0,
189995936485SShri Abhyankar                                        0,
190095936485SShri Abhyankar                                        0,
19013964eb88SJed Brown                                        0,
19023964eb88SJed Brown                                        0,
19033964eb88SJed Brown                                /*124*/ 0,
19043964eb88SJed Brown                                        0,
19053964eb88SJed Brown                                        0,
19063964eb88SJed Brown                                        0,
19073964eb88SJed Brown                                        0,
19083964eb88SJed Brown                                /*129*/ 0,
19093964eb88SJed Brown                                        0,
19103964eb88SJed Brown                                        0,
19113964eb88SJed Brown                                        0,
19123964eb88SJed Brown                                        0,
19133964eb88SJed Brown                                /*134*/ 0,
19143964eb88SJed Brown                                        0,
19153964eb88SJed Brown                                        0,
19163964eb88SJed Brown                                        0,
19173964eb88SJed Brown                                        0,
19183964eb88SJed Brown                                /*139*/ 0,
1919f9426fe0SMark Adams                                        0,
192059f5e6ceSHong Zhang                                        0,
192159f5e6ceSHong Zhang                                        0,
192259f5e6ceSHong Zhang                                        0,
192359f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
192499cafbc1SBarry Smith };
1925a30f8f8cSSatish Balay 
19264a2ae208SSatish Balay #undef __FUNCT__
19274a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
192811bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1929a30f8f8cSSatish Balay {
1930a30f8f8cSSatish Balay   PetscFunctionBegin;
1931a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1932a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1933a30f8f8cSSatish Balay }
1934a30f8f8cSSatish Balay 
19354a2ae208SSatish Balay #undef __FUNCT__
1936a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1937b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1938a23d5eceSKris Buschelman {
1939a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1940dfbe8321SBarry Smith   PetscErrorCode ierr;
1941535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1942a23d5eceSKris Buschelman 
1943a23d5eceSKris Buschelman   PetscFunctionBegin;
194433d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
194526283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
194626283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1947e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1948899cda47SBarry Smith 
1949a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1950d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1951d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1952c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1953a23d5eceSKris Buschelman 
1954d0f46423SBarry Smith   B->rmap->bs = bs;
1955a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1956a23d5eceSKris Buschelman   b->mbs      = mbs;
1957a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1958de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1959de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1960a23d5eceSKris Buschelman 
1961a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1962d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1963a23d5eceSKris Buschelman   }
1964d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1965d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1966a23d5eceSKris Buschelman 
1967d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1968d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1969a23d5eceSKris Buschelman 
1970526dfc15SBarry Smith   if (!B->preallocated) {
1971f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1972d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
19739c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
19743bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1975f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1976d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
19774aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
19783bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1979ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1980526dfc15SBarry Smith   }
1981a23d5eceSKris Buschelman 
1982526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1983526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
198426fbe8dcSKarl Rupp 
1985526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1986a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1987a23d5eceSKris Buschelman }
1988a23d5eceSKris Buschelman 
1989dfb205c3SBarry Smith #undef __FUNCT__
1990dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1991dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1992dfb205c3SBarry Smith {
1993dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1994dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1995dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1996dfb205c3SBarry Smith   PetscScalar    *values=0;
1997dfb205c3SBarry Smith   PetscErrorCode ierr;
1998dfb205c3SBarry Smith 
1999dfb205c3SBarry Smith   PetscFunctionBegin;
2000ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2001dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2002dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2003dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2004dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2005e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2006dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2007dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2008dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
2009dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2010dfb205c3SBarry Smith 
2011dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2012dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2013dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2014dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2015dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2016dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
2017dfb205c3SBarry Smith     JJ     = jj + ii[i];
2018dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
2019dfb205c3SBarry Smith       if (*JJ >= cstart) break;
2020dfb205c3SBarry Smith       JJ++;
2021dfb205c3SBarry Smith     }
2022dfb205c3SBarry Smith     d = 0;
2023dfb205c3SBarry Smith     for (; j<nz; j++) {
2024dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2025dfb205c3SBarry Smith       d++;
2026dfb205c3SBarry Smith     }
2027dfb205c3SBarry Smith     d_nnz[i] = d;
2028dfb205c3SBarry Smith     o_nnz[i] = nz - d;
2029dfb205c3SBarry Smith   }
2030dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2031dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2032dfb205c3SBarry Smith 
2033dfb205c3SBarry Smith   values = (PetscScalar*)V;
2034dfb205c3SBarry Smith   if (!values) {
2035785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2036dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2037dfb205c3SBarry Smith   }
2038dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2039dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2040dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2041dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2042dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2043dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2044dfb205c3SBarry Smith   }
2045dfb205c3SBarry Smith 
2046dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2047dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2048dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20497827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2050dfb205c3SBarry Smith   PetscFunctionReturn(0);
2051dfb205c3SBarry Smith }
2052dfb205c3SBarry Smith 
20530bad9183SKris Buschelman /*MC
2054fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2055828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2056828413b8SBarry Smith    the matrix is stored.
2057828413b8SBarry Smith 
2058828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2059828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
20600bad9183SKris Buschelman 
20610bad9183SKris Buschelman    Options Database Keys:
20620bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20630bad9183SKris Buschelman 
20640bad9183SKris Buschelman   Level: beginner
20650bad9183SKris Buschelman 
20660bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
20670bad9183SKris Buschelman M*/
20680bad9183SKris Buschelman 
2069cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
2070aa5a9175SDahai Guo 
2071a23d5eceSKris Buschelman #undef __FUNCT__
20724a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
20738cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2074b5df2d14SHong Zhang {
2075b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2076dfbe8321SBarry Smith   PetscErrorCode ierr;
207794ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2078b5df2d14SHong Zhang 
2079b5df2d14SHong Zhang   PetscFunctionBegin;
2080b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2081b0a32e0cSBarry Smith   B->data = (void*)b;
2082b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2083b5df2d14SHong Zhang 
2084b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2085b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2086b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2087b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
208826fbe8dcSKarl Rupp 
2089ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2090ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2091b5df2d14SHong Zhang 
2092b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2093854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2094b5df2d14SHong Zhang 
2095b5df2d14SHong Zhang   /* build cache for off array entries formed */
2096ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
209726fbe8dcSKarl Rupp 
2098b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20990298fd71SBarry Smith   b->colmap      = NULL;
21000298fd71SBarry Smith   b->garray      = NULL;
2101b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2102b5df2d14SHong Zhang 
2103b5df2d14SHong Zhang   /* stuff used in block assembly */
2104b5df2d14SHong Zhang   b->barray = 0;
2105b5df2d14SHong Zhang 
2106b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2107b5df2d14SHong Zhang   b->lvec    = 0;
2108b5df2d14SHong Zhang   b->Mvctx   = 0;
210940781036SHong Zhang   b->slvec0  = 0;
211040781036SHong Zhang   b->slvec0b = 0;
211140781036SHong Zhang   b->slvec1  = 0;
211240781036SHong Zhang   b->slvec1a = 0;
211340781036SHong Zhang   b->slvec1b = 0;
211440781036SHong Zhang   b->sMvctx  = 0;
2115b5df2d14SHong Zhang 
2116b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2117b5df2d14SHong Zhang   b->rowindices   = 0;
2118b5df2d14SHong Zhang   b->rowvalues    = 0;
2119b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2120b5df2d14SHong Zhang 
2121b5df2d14SHong Zhang   /* hash table stuff */
2122b5df2d14SHong Zhang   b->ht           = 0;
2123b5df2d14SHong Zhang   b->hd           = 0;
2124b5df2d14SHong Zhang   b->ht_size      = 0;
2125b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2126b5df2d14SHong Zhang   b->ht_fact      = 0;
2127b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2128b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2129b5df2d14SHong Zhang 
21307a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
21317a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21327a868f3eSHong Zhang 
213359ffdab8SBarry Smith   b->in_loc = 0;
213459ffdab8SBarry Smith   b->v_loc  = 0;
213559ffdab8SBarry Smith   b->n_loc  = 0;
213694ae4db5SBarry Smith 
2137bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2138bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2139bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
2140bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2141bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
2142bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
21436214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21446214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
21456214f412SHong Zhang #endif
2146aa5a9175SDahai Guo 
214723ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
214823ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
214923ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
215023ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
215126fbe8dcSKarl Rupp 
215217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
215394ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
215494ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
215594ae4db5SBarry Smith   if (flg) {
215694ae4db5SBarry Smith     PetscReal fact = 1.39;
215794ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
215894ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
215994ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
216094ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
216194ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
216294ae4db5SBarry Smith   }
216394ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2164b5df2d14SHong Zhang   PetscFunctionReturn(0);
2165b5df2d14SHong Zhang }
2166b5df2d14SHong Zhang 
2167209238afSKris Buschelman /*MC
2168002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2169209238afSKris Buschelman 
2170209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2171209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2172209238afSKris Buschelman 
2173209238afSKris Buschelman    Options Database Keys:
2174209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2175209238afSKris Buschelman 
2176209238afSKris Buschelman   Level: beginner
2177209238afSKris Buschelman 
2178209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2179209238afSKris Buschelman M*/
2180209238afSKris Buschelman 
21814a2ae208SSatish Balay #undef __FUNCT__
21824a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
2183b5df2d14SHong Zhang /*@C
2184b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2185b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2186b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2187b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2188b5df2d14SHong Zhang 
2189b5df2d14SHong Zhang    Collective on Mat
2190b5df2d14SHong Zhang 
2191b5df2d14SHong Zhang    Input Parameters:
21921c4f3114SJed Brown +  B - the matrix
2193bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2194bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2195b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2196b5df2d14SHong Zhang            submatrix  (same for all local rows)
2197b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
21986d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
21990298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
220095742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2201b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2202b5df2d14SHong Zhang            submatrix (same for all local rows).
2203b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2204c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22050298fd71SBarry Smith            (possibly different for each block row) or NULL.
2206b5df2d14SHong Zhang 
2207b5df2d14SHong Zhang 
2208b5df2d14SHong Zhang    Options Database Keys:
2209b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2210b5df2d14SHong Zhang                      block calculations (much slower)
2211b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2212b5df2d14SHong Zhang 
2213b5df2d14SHong Zhang    Notes:
2214b5df2d14SHong Zhang 
2215b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2216b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2217b5df2d14SHong Zhang 
221849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
221949a6f317SBarry Smith 
2220b5df2d14SHong Zhang    Storage Information:
2221b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2222b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2223b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2224b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2225b5df2d14SHong Zhang 
2226b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2227b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
22280298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2229b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2230b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2231b5df2d14SHong Zhang 
2232aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2233aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2234aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2235aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2236aa95bbe8SBarry Smith 
2237b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2238b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2239b5df2d14SHong Zhang 
2240b5df2d14SHong Zhang .vb
2241b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2242a4b1a0f6SJed Brown           --------------------------
2243c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2244c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2245c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2246a4b1a0f6SJed Brown           --------------------------
2247b5df2d14SHong Zhang .ve
2248b5df2d14SHong Zhang 
2249b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2250b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22516d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22526d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2253b5df2d14SHong Zhang 
22546d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22556d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2256c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2257c2fc9fa9SBarry Smith 
2258b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2259b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2260b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2261b5df2d14SHong Zhang    matrices.
2262b5df2d14SHong Zhang 
2263b5df2d14SHong Zhang    Level: intermediate
2264b5df2d14SHong Zhang 
2265b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2266b5df2d14SHong Zhang 
2267ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2268b5df2d14SHong Zhang @*/
22697087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2270b5df2d14SHong Zhang {
22714ac538c5SBarry Smith   PetscErrorCode ierr;
2272b5df2d14SHong Zhang 
2273b5df2d14SHong Zhang   PetscFunctionBegin;
22746ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22756ba663aaSJed Brown   PetscValidType(B,1);
22766ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
22774ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2278b5df2d14SHong Zhang   PetscFunctionReturn(0);
2279b5df2d14SHong Zhang }
2280b5df2d14SHong Zhang 
22814a2ae208SSatish Balay #undef __FUNCT__
228269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2283a30f8f8cSSatish Balay /*@C
228469b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2285a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2286a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2287a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2288a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2289a30f8f8cSSatish Balay 
2290a30f8f8cSSatish Balay    Collective on MPI_Comm
2291a30f8f8cSSatish Balay 
2292a30f8f8cSSatish Balay    Input Parameters:
2293a30f8f8cSSatish Balay +  comm - MPI communicator
2294bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2295bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2296a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2297a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2298a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2299a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2300a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2301a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2302a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2303a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2304a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2305a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2306a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
23076d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23080298fd71SBarry Smith            (possibly different for each block block row) or NULL.
230995742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
231095742e49SBarry Smith            set its value even if it is zero.
2311a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2312a30f8f8cSSatish Balay            submatrix (same for all local rows).
2313a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2314a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23150298fd71SBarry Smith            each block row) or NULL.
2316a30f8f8cSSatish Balay 
2317a30f8f8cSSatish Balay    Output Parameter:
2318a30f8f8cSSatish Balay .  A - the matrix
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay    Options Database Keys:
2321a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2322a30f8f8cSSatish Balay                      block calculations (much slower)
2323a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2324a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2325a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2326a30f8f8cSSatish Balay 
2327175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2328ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2329175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2330175b88e8SBarry Smith 
2331a30f8f8cSSatish Balay    Notes:
2332d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23336d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2334d1be2dadSMatthew Knepley 
2335a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2336a30f8f8cSSatish Balay    (possibly both).
2337a30f8f8cSSatish Balay 
2338a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2339a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2340a30f8f8cSSatish Balay 
234149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
234249a6f317SBarry Smith 
2343a30f8f8cSSatish Balay    Storage Information:
2344a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2345a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2346a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2347a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2348a30f8f8cSSatish Balay 
2349a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2350a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
23510298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2352a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2353a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2354a30f8f8cSSatish Balay 
2355a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2356a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2357a30f8f8cSSatish Balay 
2358a30f8f8cSSatish Balay .vb
2359a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2360a4b1a0f6SJed Brown           --------------------------
2361c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2362c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2363c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2364a4b1a0f6SJed Brown           --------------------------
2365a30f8f8cSSatish Balay .ve
2366a30f8f8cSSatish Balay 
2367a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2368a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23696d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23706d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2371a30f8f8cSSatish Balay 
23726d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23736d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2374a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2375a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2376a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2377a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2378a30f8f8cSSatish Balay    matrices.
2379a30f8f8cSSatish Balay 
2380a30f8f8cSSatish Balay    Level: intermediate
2381a30f8f8cSSatish Balay 
2382a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2383a30f8f8cSSatish Balay 
238469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2385a30f8f8cSSatish Balay @*/
2386a30f8f8cSSatish Balay 
238769b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2388a30f8f8cSSatish Balay {
23896849ba73SBarry Smith   PetscErrorCode ierr;
23901302d50aSBarry Smith   PetscMPIInt    size;
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay   PetscFunctionBegin;
2393f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2394f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2395273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2396273d9f13SBarry Smith   if (size > 1) {
2397b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2398b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2399273d9f13SBarry Smith   } else {
2400273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2401273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2402273d9f13SBarry Smith   }
2403a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2404a30f8f8cSSatish Balay }
2405a30f8f8cSSatish Balay 
2406a30f8f8cSSatish Balay 
24074a2ae208SSatish Balay #undef __FUNCT__
24084a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
24096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2410a30f8f8cSSatish Balay {
2411a30f8f8cSSatish Balay   Mat            mat;
2412a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2413dfbe8321SBarry Smith   PetscErrorCode ierr;
2414d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2415387bc808SHong Zhang   PetscScalar    *array;
2416a30f8f8cSSatish Balay 
2417a30f8f8cSSatish Balay   PetscFunctionBegin;
2418a30f8f8cSSatish Balay   *newmat = 0;
241926fbe8dcSKarl Rupp 
2420ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2421d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
24227adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24231d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
24241e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
24251e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2426e1b6402fSHong Zhang 
2427d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2428273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
242982327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24307fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24317fff6886SHong Zhang 
2432b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2433a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2434a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2435a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2436a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2437a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2438a30f8f8cSSatish Balay 
2439899cda47SBarry Smith 
2440a30f8f8cSSatish Balay   a->size         = oldmat->size;
2441a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2442a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2443a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2444a30f8f8cSSatish Balay   a->rowindices   = 0;
2445a30f8f8cSSatish Balay   a->rowvalues    = 0;
2446a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2447a30f8f8cSSatish Balay   a->barray       = 0;
2448899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2449899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2450899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2451899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2452a30f8f8cSSatish Balay 
2453a30f8f8cSSatish Balay   /* hash table stuff */
2454a30f8f8cSSatish Balay   a->ht           = 0;
2455a30f8f8cSSatish Balay   a->hd           = 0;
2456a30f8f8cSSatish Balay   a->ht_size      = 0;
2457a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2458a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2459a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2460a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2461a30f8f8cSSatish Balay 
2462899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2463a30f8f8cSSatish Balay   if (oldmat->colmap) {
2464a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2465a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2466a30f8f8cSSatish Balay #else
2467854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
24683bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
24691302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2470a30f8f8cSSatish Balay #endif
2471a30f8f8cSSatish Balay   } else a->colmap = 0;
2472387bc808SHong Zhang 
2473a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2474785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
24753bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
24761302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2477a30f8f8cSSatish Balay   } else a->garray = 0;
2478a30f8f8cSSatish Balay 
2479ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2480a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
24813bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2482a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
24833bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
248482327fa8SHong Zhang 
248582327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
24863bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
248782327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
24883bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2489387bc808SHong Zhang 
2490387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
24911ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2492778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2493778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
24941ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
24951ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2496778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
24971ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
24983bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
24993bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
25003bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
25013bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
25023bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2503387bc808SHong Zhang 
2504387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2505387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2506387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
25073bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
250882327fa8SHong Zhang 
2509a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
25103bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2511a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
25123bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2513140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2514a30f8f8cSSatish Balay   *newmat = mat;
2515a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2516a30f8f8cSSatish Balay }
2517a30f8f8cSSatish Balay 
25184a2ae208SSatish Balay #undef __FUNCT__
25195bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2520112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
252195936485SShri Abhyankar {
252295936485SShri Abhyankar   PetscErrorCode ierr;
252395936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
252495936485SShri Abhyankar   PetscScalar    *vals,*buf;
2525ce94432eSBarry Smith   MPI_Comm       comm;
252695936485SShri Abhyankar   MPI_Status     status;
2527adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2528adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
252995936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
25303059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
253195936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2532461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
253395936485SShri Abhyankar   int            fd;
253495936485SShri Abhyankar 
253595936485SShri Abhyankar   PetscFunctionBegin;
2536c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2537c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2538ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
25390298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
25400298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
254195936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
25423059b6faSBarry Smith   if (bs < 0) bs = 1;
254395936485SShri Abhyankar 
254495936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
254595936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
254695936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
25475872f025SBarry Smith   if (!rank) {
254895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
254995936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
255095936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
255195936485SShri Abhyankar   }
255295936485SShri Abhyankar 
255395936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
255426fbe8dcSKarl Rupp   M    = header[1];
255526fbe8dcSKarl Rupp   N    = header[2];
255695936485SShri Abhyankar 
255795936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2558461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2559461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
256095936485SShri Abhyankar 
256195936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
256295936485SShri Abhyankar 
256395936485SShri Abhyankar   /*
256495936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
256595936485SShri Abhyankar      divisible by the blocksize
256695936485SShri Abhyankar   */
256795936485SShri Abhyankar   Mbs        = M/bs;
256895936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
256995936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
257095936485SShri Abhyankar   else                  Mbs++;
257195936485SShri Abhyankar   if (extra_rows &&!rank) {
257295936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
257395936485SShri Abhyankar   }
257495936485SShri Abhyankar 
257595936485SShri Abhyankar   /* determine ownership of all rows */
257695936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
257795936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
257895936485SShri Abhyankar     m   = mbs*bs;
257995936485SShri Abhyankar   } else { /* User Set */
258095936485SShri Abhyankar     m   = newmat->rmap->n;
258195936485SShri Abhyankar     mbs = m/bs;
258295936485SShri Abhyankar   }
2583dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
25844dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
258595936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
258695936485SShri Abhyankar   rowners[0] = 0;
258795936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
258895936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
258995936485SShri Abhyankar   rstart = rowners[rank];
259095936485SShri Abhyankar   rend   = rowners[rank+1];
259195936485SShri Abhyankar 
259295936485SShri Abhyankar   /* distribute row lengths to all processors */
2593785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
259495936485SShri Abhyankar   if (!rank) {
2595854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
259695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
259795936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2598785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
259995936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
260095936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
260195936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
260295936485SShri Abhyankar   } else {
260395936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
260495936485SShri Abhyankar   }
260595936485SShri Abhyankar 
260695936485SShri Abhyankar   if (!rank) {   /* procs[0] */
260795936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2608785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
260995936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
261095936485SShri Abhyankar     for (i=0; i<size; i++) {
261195936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
261295936485SShri Abhyankar         procsnz[i] += rowlengths[j];
261395936485SShri Abhyankar       }
261495936485SShri Abhyankar     }
261595936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
261695936485SShri Abhyankar 
261795936485SShri Abhyankar     /* determine max buffer needed and allocate it */
261895936485SShri Abhyankar     maxnz = 0;
261995936485SShri Abhyankar     for (i=0; i<size; i++) {
262095936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
262195936485SShri Abhyankar     }
2622785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
262395936485SShri Abhyankar 
262495936485SShri Abhyankar     /* read in my part of the matrix column indices  */
262595936485SShri Abhyankar     nz     = procsnz[0];
2626785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
262795936485SShri Abhyankar     mycols = ibuf;
262895936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
262995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
263026fbe8dcSKarl Rupp     if (size == 1) {
263126fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
263226fbe8dcSKarl Rupp     }
263395936485SShri Abhyankar 
263495936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
263595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
263695936485SShri Abhyankar       nz   = procsnz[i];
263795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
263895936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
263995936485SShri Abhyankar     }
264095936485SShri Abhyankar     /* read in the stuff for the last proc */
264195936485SShri Abhyankar     if (size != 1) {
264295936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
264395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
264495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
264595936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
264695936485SShri Abhyankar     }
264795936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
264895936485SShri Abhyankar   } else {  /* procs[i], i>0 */
264995936485SShri Abhyankar     /* determine buffer space needed for message */
265095936485SShri Abhyankar     nz = 0;
265126fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2652785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
265395936485SShri Abhyankar     mycols = ibuf;
265495936485SShri Abhyankar     /* receive message of column indices*/
265595936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
265695936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
265795936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
265895936485SShri Abhyankar   }
265995936485SShri Abhyankar 
266095936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2661dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2662dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
266395936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
266495936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
266595936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
266695936485SShri Abhyankar   rowcount = 0;
266795936485SShri Abhyankar   nzcount  = 0;
266895936485SShri Abhyankar   for (i=0; i<mbs; i++) {
266995936485SShri Abhyankar     dcount  = 0;
267095936485SShri Abhyankar     odcount = 0;
267195936485SShri Abhyankar     for (j=0; j<bs; j++) {
267295936485SShri Abhyankar       kmax = locrowlens[rowcount];
267395936485SShri Abhyankar       for (k=0; k<kmax; k++) {
267495936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
267595936485SShri Abhyankar         if (!mask[tmp]) {
267695936485SShri Abhyankar           mask[tmp] = 1;
267795936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
267895936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
267995936485SShri Abhyankar         }
268095936485SShri Abhyankar       }
268195936485SShri Abhyankar       rowcount++;
268295936485SShri Abhyankar     }
268395936485SShri Abhyankar 
268495936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
268595936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
268695936485SShri Abhyankar 
268795936485SShri Abhyankar     /* zero out the mask elements we set */
268895936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
268995936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
269095936485SShri Abhyankar   }
269195936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
269295936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
26936816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
269495936485SShri Abhyankar 
269595936485SShri Abhyankar   if (!rank) {
2696785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
269795936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
269895936485SShri Abhyankar     nz     = procsnz[0];
269995936485SShri Abhyankar     vals   = buf;
270095936485SShri Abhyankar     mycols = ibuf;
270195936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
270295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
270326fbe8dcSKarl Rupp     if (size == 1) {
270426fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
270526fbe8dcSKarl Rupp     }
270695936485SShri Abhyankar 
270795936485SShri Abhyankar     /* insert into matrix */
270895936485SShri Abhyankar     jj = rstart*bs;
270995936485SShri Abhyankar     for (i=0; i<m; i++) {
271095936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
271195936485SShri Abhyankar       mycols += locrowlens[i];
271295936485SShri Abhyankar       vals   += locrowlens[i];
271395936485SShri Abhyankar       jj++;
271495936485SShri Abhyankar     }
271595936485SShri Abhyankar 
271695936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
271795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
271895936485SShri Abhyankar       nz   = procsnz[i];
271995936485SShri Abhyankar       vals = buf;
272095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
272195936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
272295936485SShri Abhyankar     }
272395936485SShri Abhyankar     /* the last proc */
272495936485SShri Abhyankar     if (size != 1) {
272595936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
272695936485SShri Abhyankar       vals = buf;
272795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
272895936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
272995936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
273095936485SShri Abhyankar     }
273195936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
273295936485SShri Abhyankar 
273395936485SShri Abhyankar   } else {
273495936485SShri Abhyankar     /* receive numeric values */
2735785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
273695936485SShri Abhyankar 
273795936485SShri Abhyankar     /* receive message of values*/
273895936485SShri Abhyankar     vals   = buf;
273995936485SShri Abhyankar     mycols = ibuf;
274095936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
274195936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
274295936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
274395936485SShri Abhyankar 
274495936485SShri Abhyankar     /* insert into matrix */
274595936485SShri Abhyankar     jj = rstart*bs;
274695936485SShri Abhyankar     for (i=0; i<m; i++) {
274795936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
274895936485SShri Abhyankar       mycols += locrowlens[i];
274995936485SShri Abhyankar       vals   += locrowlens[i];
275095936485SShri Abhyankar       jj++;
275195936485SShri Abhyankar     }
275295936485SShri Abhyankar   }
275395936485SShri Abhyankar 
275495936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
275595936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
275695936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
275795936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
275895936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
275995936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
276095936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
276195936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
276295936485SShri Abhyankar   PetscFunctionReturn(0);
276395936485SShri Abhyankar }
276495936485SShri Abhyankar 
276595936485SShri Abhyankar #undef __FUNCT__
27664a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2767dcf5cc72SBarry Smith /*XXXXX@
2768a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2769a30f8f8cSSatish Balay 
2770a30f8f8cSSatish Balay    Input Parameters:
2771a30f8f8cSSatish Balay .  mat  - the matrix
2772a30f8f8cSSatish Balay .  fact - factor
2773a30f8f8cSSatish Balay 
2774c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2775a30f8f8cSSatish Balay 
2776a30f8f8cSSatish Balay    Level: advanced
2777a30f8f8cSSatish Balay 
2778a30f8f8cSSatish Balay   Notes:
2779a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2780a30f8f8cSSatish Balay 
2781a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2782a30f8f8cSSatish Balay 
2783a30f8f8cSSatish Balay .seealso: MatSetOption()
2784dcf5cc72SBarry Smith @XXXXX*/
2785dcf5cc72SBarry Smith 
278624d5174aSHong Zhang 
27874a2ae208SSatish Balay #undef __FUNCT__
2788985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2789985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
279024d5174aSHong Zhang {
279124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2792f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2793ca54ac64SHong Zhang   PetscReal      atmp;
279487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2795dfbe8321SBarry Smith   PetscErrorCode ierr;
27961302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
27971302d50aSBarry Smith   PetscMPIInt    rank,size;
27981302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
279987828ca2SBarry Smith   PetscScalar    *va;
28008a1c53f2SBarry Smith   MatScalar      *ba;
2801f4c0e9e4SHong Zhang   MPI_Status     stat;
280224d5174aSHong Zhang 
280324d5174aSHong Zhang   PetscFunctionBegin;
2804e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
28050298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
28061ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2807f4c0e9e4SHong Zhang 
2808ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2809ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2810f4c0e9e4SHong Zhang 
2811d0f46423SBarry Smith   bs  = A->rmap->bs;
2812f4c0e9e4SHong Zhang   mbs = a->mbs;
2813f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2814f4c0e9e4SHong Zhang   ba  = b->a;
2815f4c0e9e4SHong Zhang   bi  = b->i;
2816f4c0e9e4SHong Zhang   bj  = b->j;
2817f4c0e9e4SHong Zhang 
2818f4c0e9e4SHong Zhang   /* find ownerships */
2819d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2820f4c0e9e4SHong Zhang 
2821f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2822785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2823ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2824f4c0e9e4SHong Zhang 
2825f4c0e9e4SHong Zhang   /* row_max for B */
2826b8475685SHong Zhang   if (rank != size-1) {
2827f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2828f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2829f4c0e9e4SHong Zhang       brow  = bs*i;
2830f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2831f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2832f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2833ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
283404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2835f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2836f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2837ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2838ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2839f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2840f4c0e9e4SHong Zhang           }
2841f4c0e9e4SHong Zhang         }
2842f4c0e9e4SHong Zhang         bj++;
2843f4c0e9e4SHong Zhang       }
2844f4c0e9e4SHong Zhang     }
2845f4c0e9e4SHong Zhang 
2846f4c0e9e4SHong Zhang     /* send values to its owners */
2847f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2848f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2849ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2850ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2851ca54ac64SHong Zhang     }
2852f4c0e9e4SHong Zhang   }
2853f4c0e9e4SHong Zhang 
2854f4c0e9e4SHong Zhang   /* receive values */
2855ca54ac64SHong Zhang   if (rank) {
2856f4c0e9e4SHong Zhang     rvalues = work;
2857ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2858f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2859ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2860f4c0e9e4SHong Zhang       /* process values */
2861f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2862ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2863f4c0e9e4SHong Zhang       }
2864f4c0e9e4SHong Zhang     }
2865ca54ac64SHong Zhang   }
2866f4c0e9e4SHong Zhang 
28671ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2868ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
286924d5174aSHong Zhang   PetscFunctionReturn(0);
287024d5174aSHong Zhang }
28712798e883SHong Zhang 
28722798e883SHong Zhang #undef __FUNCT__
287341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
287441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
28752798e883SHong Zhang {
28762798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2877dfbe8321SBarry Smith   PetscErrorCode    ierr;
2878d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
28793649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2880ffe4fb16SHong Zhang   Vec               bb1;
28813649974fSBarry Smith   const PetscScalar *b;
2882ffe4fb16SHong Zhang 
2883ffe4fb16SHong Zhang   PetscFunctionBegin;
2884e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2885e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2886ffe4fb16SHong Zhang 
2887a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
288841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2889a2b30743SBarry Smith     PetscFunctionReturn(0);
2890a2b30743SBarry Smith   }
2891a2b30743SBarry Smith 
2892ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2893ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
289441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2895ffe4fb16SHong Zhang       its--;
2896ffe4fb16SHong Zhang     }
2897ffe4fb16SHong Zhang 
2898ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2899ffe4fb16SHong Zhang     while (its--) {
2900ffe4fb16SHong Zhang 
2901ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2902ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2903ffe4fb16SHong Zhang 
2904ffe4fb16SHong Zhang       /* copy xx into slvec0a */
29051ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
29061ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2907ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
29081ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2909ffe4fb16SHong Zhang 
2910efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2911ffe4fb16SHong Zhang 
2912ffe4fb16SHong Zhang       /* copy bb into slvec1a */
29131ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
29143649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2915ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
29161ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2917ffe4fb16SHong Zhang 
2918ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2919fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2920ffe4fb16SHong Zhang 
2921ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29221ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2923a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2924ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2925ffe4fb16SHong Zhang 
2926ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2927ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2928ffe4fb16SHong Zhang 
2929ffe4fb16SHong Zhang       /* local diagonal sweep */
293041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2931ffe4fb16SHong Zhang     }
29326bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2933fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
293441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2935fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
293641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2937fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2938fa22f6d0SBarry Smith     Vec               xx1;
2939ace3abfcSBarry Smith     PetscBool         hasop;
294020f1ed55SBarry Smith     const PetscScalar *diag;
2941887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
294220f1ed55SBarry Smith     PetscInt          i,n;
2943fa22f6d0SBarry Smith 
2944fa22f6d0SBarry Smith     if (!mat->xx1) {
2945fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2946fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2947fa22f6d0SBarry Smith     }
2948fa22f6d0SBarry Smith     xx1 = mat->xx1;
2949fa22f6d0SBarry Smith     bb1 = mat->bb1;
2950fa22f6d0SBarry Smith 
295141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2952fa22f6d0SBarry Smith 
2953fa22f6d0SBarry Smith     if (!mat->diag) {
2954effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
29552a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2956fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2957fa22f6d0SBarry Smith     }
2958fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2959fa22f6d0SBarry Smith 
2960fa22f6d0SBarry Smith     if (hasop) {
2961fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2962887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
296320f1ed55SBarry Smith     } else {
296420f1ed55SBarry Smith       /*
296520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
296620f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2967887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
296820f1ed55SBarry Smith       */
296920f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29703649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29713649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
297220f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
297320f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2974887ee2caSBarry Smith       if (omega == 1.0) {
297526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
297620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2977887ee2caSBarry Smith       } else {
297826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2979887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2980887ee2caSBarry Smith       }
298120f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29823649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29833649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
298420f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
298520f1ed55SBarry Smith     }
2986fa22f6d0SBarry Smith 
2987fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2988fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2989fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2990fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2991fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2992fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2993fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2994fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2995fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2996fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2997effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2998fa22f6d0SBarry Smith 
2999fa22f6d0SBarry Smith     /* local sweep */
300041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
3001fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
3002f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
3003ffe4fb16SHong Zhang   PetscFunctionReturn(0);
3004ffe4fb16SHong Zhang }
3005ffe4fb16SHong Zhang 
3006ffe4fb16SHong Zhang #undef __FUNCT__
300741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
300841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
3009ffe4fb16SHong Zhang {
3010ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
3011dfbe8321SBarry Smith   PetscErrorCode ierr;
30122798e883SHong Zhang   Vec            lvec1,bb1;
30132798e883SHong Zhang 
30142798e883SHong Zhang   PetscFunctionBegin;
3015e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3016e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
30172798e883SHong Zhang 
3018c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
30192798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
302041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
30212798e883SHong Zhang       its--;
30222798e883SHong Zhang     }
30232798e883SHong Zhang 
30242798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
30252798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
30262798e883SHong Zhang     while (its--) {
3027ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30282798e883SHong Zhang 
30292798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
30302798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3031efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
30322798e883SHong Zhang 
3033ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30342798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3035ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30362798e883SHong Zhang 
30372798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3038efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
30392798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
30402798e883SHong Zhang 
3041ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30422798e883SHong Zhang 
3043c14dc6b6SHong Zhang       /* diagonal sweep */
304441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
30452798e883SHong Zhang     }
30466bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
30476bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
30486bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
30492798e883SHong Zhang   PetscFunctionReturn(0);
30502798e883SHong Zhang }
30512798e883SHong Zhang 
3052dfb205c3SBarry Smith #undef __FUNCT__
3053dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
3054dfb205c3SBarry Smith /*@
3055dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3056dfb205c3SBarry Smith          CSR format the local rows.
3057dfb205c3SBarry Smith 
3058dfb205c3SBarry Smith    Collective on MPI_Comm
3059dfb205c3SBarry Smith 
3060dfb205c3SBarry Smith    Input Parameters:
3061dfb205c3SBarry Smith +  comm - MPI communicator
3062dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3063dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3064dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3065dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3066dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3067dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3068dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3069dfb205c3SBarry Smith .   i - row indices
3070dfb205c3SBarry Smith .   j - column indices
3071dfb205c3SBarry Smith -   a - matrix values
3072dfb205c3SBarry Smith 
3073dfb205c3SBarry Smith    Output Parameter:
3074dfb205c3SBarry Smith .   mat - the matrix
3075dfb205c3SBarry Smith 
3076dfb205c3SBarry Smith    Level: intermediate
3077dfb205c3SBarry Smith 
3078dfb205c3SBarry Smith    Notes:
3079dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3080dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3081dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3082dfb205c3SBarry Smith 
3083dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3084dfb205c3SBarry Smith 
3085dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3086dfb205c3SBarry Smith 
3087dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
308869b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3089dfb205c3SBarry Smith @*/
30907087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3091dfb205c3SBarry Smith {
3092dfb205c3SBarry Smith   PetscErrorCode ierr;
3093dfb205c3SBarry Smith 
3094dfb205c3SBarry Smith 
3095dfb205c3SBarry Smith   PetscFunctionBegin;
3096f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3097dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3098dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3099dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3100dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3101dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3102dfb205c3SBarry Smith   PetscFunctionReturn(0);
3103dfb205c3SBarry Smith }
3104dfb205c3SBarry Smith 
3105dfb205c3SBarry Smith 
3106dfb205c3SBarry Smith #undef __FUNCT__
3107dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
3108dfb205c3SBarry Smith /*@C
3109dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3110dfb205c3SBarry Smith    (the default parallel PETSc format).
3111dfb205c3SBarry Smith 
3112dfb205c3SBarry Smith    Collective on MPI_Comm
3113dfb205c3SBarry Smith 
3114dfb205c3SBarry Smith    Input Parameters:
31151c4f3114SJed Brown +  B - the matrix
3116dfb205c3SBarry Smith .  bs - the block size
3117dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3118dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3119dfb205c3SBarry Smith -  v - optional values in the matrix
3120dfb205c3SBarry Smith 
3121dfb205c3SBarry Smith    Level: developer
3122dfb205c3SBarry Smith 
3123dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3124dfb205c3SBarry Smith 
312569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3126dfb205c3SBarry Smith @*/
31277087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3128dfb205c3SBarry Smith {
31294ac538c5SBarry Smith   PetscErrorCode ierr;
3130dfb205c3SBarry Smith 
3131dfb205c3SBarry Smith   PetscFunctionBegin;
31324ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3133dfb205c3SBarry Smith   PetscFunctionReturn(0);
3134dfb205c3SBarry Smith }
3135dfb205c3SBarry Smith 
3136de4b53ebSHong Zhang #undef __FUNCT__
313710c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
313810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
31394dcd73b1SHong Zhang {
31404dcd73b1SHong Zhang   PetscErrorCode ierr;
314110c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
314210c56fdeSHong Zhang   PetscInt       *indx;
314310c56fdeSHong Zhang   PetscScalar    *values;
3144dfb205c3SBarry Smith 
31454dcd73b1SHong Zhang   PetscFunctionBegin;
31464dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
314710c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
314810c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
314910c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
315010c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
31514dcd73b1SHong Zhang 
315210c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
315310c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
315410c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
315510c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
315610c56fdeSHong Zhang     }
315710c56fdeSHong Zhang     /* Check sum(n) = Nbs */
3158b2566f29SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
315910c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
316010c56fdeSHong Zhang 
316110c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
316210c56fdeSHong Zhang     rstart -= mbs;
31634dcd73b1SHong Zhang 
31644dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
316510c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3166e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
316710c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
31684dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
31694dcd73b1SHong Zhang       nnz = nnz/bs;
31704dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
31714dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
31724dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
31734dcd73b1SHong Zhang     }
3174e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
31754dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
31764dcd73b1SHong Zhang 
31774dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
317810c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
31794dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
31804dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
31814dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
31824dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
31834dcd73b1SHong Zhang   }
31844dcd73b1SHong Zhang 
318510c56fdeSHong Zhang   /* numeric phase */
31864dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
318710c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
31884dcd73b1SHong Zhang 
3189e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
31904dcd73b1SHong Zhang   for (i=0; i<m; i++) {
31914dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31924dcd73b1SHong Zhang     Ii   = i + rstart;
319310c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
31944dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31954dcd73b1SHong Zhang   }
3196e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
319710c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
319810c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31994dcd73b1SHong Zhang   PetscFunctionReturn(0);
32004dcd73b1SHong Zhang }
3201