1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 52d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237a30f8f8cSSatish Balay a_noinsert:; \ 238a30f8f8cSSatish Balay ailen[brow] = nrow; \ 239a8f51744SPierre Jolivet } while (0) 240e5e170daSBarry Smith 241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 242a8f51744SPierre Jolivet do { \ 243a30f8f8cSSatish Balay brow = row / bs; \ 2449371c9d4SSatish Balay rp = bj + bi[brow]; \ 2459371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2469371c9d4SSatish Balay rmax = bimax[brow]; \ 2479371c9d4SSatish Balay nrow = bilen[brow]; \ 248a30f8f8cSSatish Balay bcol = col / bs; \ 2499371c9d4SSatish Balay ridx = row % bs; \ 2509371c9d4SSatish Balay cidx = col % bs; \ 2519371c9d4SSatish Balay low = 0; \ 2529371c9d4SSatish Balay high = nrow; \ 253a30f8f8cSSatish Balay while (high - low > 3) { \ 254a30f8f8cSSatish Balay t = (low + high) / 2; \ 255a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 256a30f8f8cSSatish Balay else low = t; \ 257a30f8f8cSSatish Balay } \ 258a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 259a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 260a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 261a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 262a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 263a30f8f8cSSatish Balay else *bap = value; \ 264a30f8f8cSSatish Balay goto b_noinsert; \ 265a30f8f8cSSatish Balay } \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2685f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 269fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 270a30f8f8cSSatish Balay N = nrow++ - 1; \ 271a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 275a30f8f8cSSatish Balay rp[_i] = bcol; \ 276a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 277a30f8f8cSSatish Balay b_noinsert:; \ 278a30f8f8cSSatish Balay bilen[brow] = nrow; \ 279a8f51744SPierre Jolivet } while (0) 280a30f8f8cSSatish Balay 281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 282da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 283a30f8f8cSSatish Balay */ 28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 285d71ae5a4SJacob Faibussowitsch { 286a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 287a30f8f8cSSatish Balay MatScalar value; 288ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2891302d50aSBarry Smith PetscInt i, j, row, col; 290d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 291d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 292d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 293a30f8f8cSSatish Balay 294a30f8f8cSSatish Balay /* Some Variables required in the macro */ 295a30f8f8cSSatish Balay Mat A = baij->A; 29657508eceSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 2971302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 298a30f8f8cSSatish Balay MatScalar *aa = a->a; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay Mat B = baij->B; 30157508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 3021302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 303a30f8f8cSSatish Balay MatScalar *ba = b->a; 304a30f8f8cSSatish Balay 3051302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3061302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 307a30f8f8cSSatish Balay MatScalar *ap, *bap; 308a30f8f8cSSatish Balay 309a30f8f8cSSatish Balay /* for stash */ 3100298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3110298fd71SBarry Smith MatScalar *v_loc = NULL; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 314a30f8f8cSSatish Balay if (!baij->donotstash) { 31559ffdab8SBarry Smith if (n > baij->n_loc) { 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32026fbe8dcSKarl Rupp 32159ffdab8SBarry Smith baij->n_loc = n; 32259ffdab8SBarry Smith } 32359ffdab8SBarry Smith in_loc = baij->in_loc; 32459ffdab8SBarry Smith v_loc = baij->v_loc; 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay 327a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 328a30f8f8cSSatish Balay if (im[i] < 0) continue; 3295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 330a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 331a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 332a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33301b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 334966bd95aSPierre Jolivet PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33601b2bd88SHong Zhang } 337a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 338a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3399371c9d4SSatish Balay brow = row / bs; 3409371c9d4SSatish Balay bcol = col / bs; 341a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 342db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 343db4deed7SKarl Rupp else value = v[i + j * m]; 344d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3459566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 346f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 347f7d195e4SLawrence Mitchell continue; 348f7d195e4SLawrence Mitchell } else { 349f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 350f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 351a30f8f8cSSatish Balay if (mat->was_assembled) { 35248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 353a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 354eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35571730473SSatish Balay col = col - 1; 356a30f8f8cSSatish Balay #else 35771730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 358a30f8f8cSSatish Balay #endif 359f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) { 3609566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 361a30f8f8cSSatish Balay col = in[j]; 362a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 363a30f8f8cSSatish Balay B = baij->B; 36457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 3659371c9d4SSatish Balay bimax = b->imax; 3669371c9d4SSatish Balay bi = b->i; 3679371c9d4SSatish Balay bilen = b->ilen; 3689371c9d4SSatish Balay bj = b->j; 369a30f8f8cSSatish Balay ba = b->a; 37071730473SSatish Balay } else col += in[j] % bs; 371a30f8f8cSSatish Balay } else col = in[j]; 372db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 373db4deed7SKarl Rupp else value = v[i + j * m]; 374d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3759566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 376a30f8f8cSSatish Balay } 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } else { /* off processor entry */ 3795f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 380a30f8f8cSSatish Balay if (!baij->donotstash) { 3815080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 382a30f8f8cSSatish Balay n_loc = 0; 383a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 384f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 385a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 386a30f8f8cSSatish Balay if (roworiented) { 387a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 388a30f8f8cSSatish Balay } else { 389a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 390a30f8f8cSSatish Balay } 391a30f8f8cSSatish Balay n_loc++; 392a30f8f8cSSatish Balay } 3939566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 3973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay 400d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 401d71ae5a4SJacob Faibussowitsch { 40236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40336bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40436bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40536bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40636bd2089SBarry Smith PetscBool roworiented = a->roworiented; 40736bd2089SBarry Smith const PetscScalar *value = v; 40836bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 40936bd2089SBarry Smith 41036bd2089SBarry Smith PetscFunctionBegin; 41136bd2089SBarry Smith if (col < row) { 412966bd95aSPierre Jolivet PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 413966bd95aSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41436bd2089SBarry Smith } 41536bd2089SBarry Smith rp = aj + ai[row]; 41636bd2089SBarry Smith ap = aa + bs2 * ai[row]; 41736bd2089SBarry Smith rmax = imax[row]; 41836bd2089SBarry Smith nrow = ailen[row]; 41936bd2089SBarry Smith value = v; 42036bd2089SBarry Smith low = 0; 42136bd2089SBarry Smith high = nrow; 42236bd2089SBarry Smith 42336bd2089SBarry Smith while (high - low > 7) { 42436bd2089SBarry Smith t = (low + high) / 2; 42536bd2089SBarry Smith if (rp[t] > col) high = t; 42636bd2089SBarry Smith else low = t; 42736bd2089SBarry Smith } 42836bd2089SBarry Smith for (i = low; i < high; i++) { 42936bd2089SBarry Smith if (rp[i] > col) break; 43036bd2089SBarry Smith if (rp[i] == col) { 43136bd2089SBarry Smith bap = ap + bs2 * i; 43236bd2089SBarry Smith if (roworiented) { 43336bd2089SBarry Smith if (is == ADD_VALUES) { 43436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 435ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43636bd2089SBarry Smith } 43736bd2089SBarry Smith } else { 43836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 439ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44036bd2089SBarry Smith } 44136bd2089SBarry Smith } 44236bd2089SBarry Smith } else { 44336bd2089SBarry Smith if (is == ADD_VALUES) { 44436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 445ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44636bd2089SBarry Smith } 44736bd2089SBarry Smith } else { 44836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 449ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45036bd2089SBarry Smith } 45136bd2089SBarry Smith } 45236bd2089SBarry Smith } 45336bd2089SBarry Smith goto noinsert2; 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4575f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 45836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4599371c9d4SSatish Balay N = nrow++ - 1; 4609371c9d4SSatish Balay high++; 46136bd2089SBarry Smith /* shift up all the later entries in this row */ 4629566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46436bd2089SBarry Smith rp[i] = col; 46536bd2089SBarry Smith bap = ap + bs2 * i; 46636bd2089SBarry Smith if (roworiented) { 46736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 468ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } else { 47136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 472ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47336bd2089SBarry Smith } 47436bd2089SBarry Smith } 47536bd2089SBarry Smith noinsert2:; 47636bd2089SBarry Smith ailen[row] = nrow; 4773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47836bd2089SBarry Smith } 47936bd2089SBarry Smith 48036bd2089SBarry Smith /* 48136bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48236bd2089SBarry Smith */ 483d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 484d71ae5a4SJacob Faibussowitsch { 48536bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 48736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 48836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 48936bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49036bd2089SBarry Smith const PetscScalar *value = v; 49136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49236bd2089SBarry Smith 49336bd2089SBarry Smith PetscFunctionBegin; 49436bd2089SBarry Smith rp = aj + ai[row]; 49536bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49636bd2089SBarry Smith rmax = imax[row]; 49736bd2089SBarry Smith nrow = ailen[row]; 49836bd2089SBarry Smith low = 0; 49936bd2089SBarry Smith high = nrow; 50036bd2089SBarry Smith value = v; 50136bd2089SBarry Smith while (high - low > 7) { 50236bd2089SBarry Smith t = (low + high) / 2; 50336bd2089SBarry Smith if (rp[t] > col) high = t; 50436bd2089SBarry Smith else low = t; 50536bd2089SBarry Smith } 50636bd2089SBarry Smith for (i = low; i < high; i++) { 50736bd2089SBarry Smith if (rp[i] > col) break; 50836bd2089SBarry Smith if (rp[i] == col) { 50936bd2089SBarry Smith bap = ap + bs2 * i; 51036bd2089SBarry Smith if (roworiented) { 51136bd2089SBarry Smith if (is == ADD_VALUES) { 51236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 513ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51436bd2089SBarry Smith } 51536bd2089SBarry Smith } else { 51636bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 517ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 51836bd2089SBarry Smith } 51936bd2089SBarry Smith } 52036bd2089SBarry Smith } else { 52136bd2089SBarry Smith if (is == ADD_VALUES) { 52236bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 523ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52436bd2089SBarry Smith bap += bs; 52536bd2089SBarry Smith } 52636bd2089SBarry Smith } else { 52736bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 528ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 52936bd2089SBarry Smith bap += bs; 53036bd2089SBarry Smith } 53136bd2089SBarry Smith } 53236bd2089SBarry Smith } 53336bd2089SBarry Smith goto noinsert2; 53436bd2089SBarry Smith } 53536bd2089SBarry Smith } 53636bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5375f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 53836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5399371c9d4SSatish Balay N = nrow++ - 1; 5409371c9d4SSatish Balay high++; 54136bd2089SBarry Smith /* shift up all the later entries in this row */ 5429566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5439566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54436bd2089SBarry Smith rp[i] = col; 54536bd2089SBarry Smith bap = ap + bs2 * i; 54636bd2089SBarry Smith if (roworiented) { 54736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 548ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 54936bd2089SBarry Smith } 55036bd2089SBarry Smith } else { 55136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 552ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55336bd2089SBarry Smith } 55436bd2089SBarry Smith } 55536bd2089SBarry Smith noinsert2:; 55636bd2089SBarry Smith ailen[row] = nrow; 5573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55836bd2089SBarry Smith } 55936bd2089SBarry Smith 56036bd2089SBarry Smith /* 56136bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56236bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56336bd2089SBarry Smith */ 56466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 565d71ae5a4SJacob Faibussowitsch { 5660880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 567f15d580aSBarry Smith const MatScalar *value; 568f15d580aSBarry Smith MatScalar *barray = baij->barray; 569ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 570899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 571476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 572476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5730880e062SHong Zhang 574a30f8f8cSSatish Balay PetscFunctionBegin; 5750880e062SHong Zhang if (!barray) { 5769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5770880e062SHong Zhang baij->barray = barray; 5780880e062SHong Zhang } 5790880e062SHong Zhang 5800880e062SHong Zhang if (roworiented) { 5810880e062SHong Zhang stepval = (n - 1) * bs; 5820880e062SHong Zhang } else { 5830880e062SHong Zhang stepval = (m - 1) * bs; 5840880e062SHong Zhang } 5850880e062SHong Zhang for (i = 0; i < m; i++) { 5860880e062SHong Zhang if (im[i] < 0) continue; 5876bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5880880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5890880e062SHong Zhang row = im[i] - rstart; 5900880e062SHong Zhang for (j = 0; j < n; j++) { 591f3f98c53SJed Brown if (im[i] > in[j]) { 592966bd95aSPierre Jolivet PetscCheck(ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 593966bd95aSPierre Jolivet continue; /* ignore lower triangular blocks */ 594f3f98c53SJed Brown } 5950880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 596966bd95aSPierre Jolivet if (roworiented && n == 1) { 597f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5980880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 599f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6000880e062SHong Zhang } else { /* Here a copy is required */ 6010880e062SHong Zhang if (roworiented) { 6020880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6030880e062SHong Zhang } else { 6040880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6050880e062SHong Zhang } 6060880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 607ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6080880e062SHong Zhang } 6090880e062SHong Zhang barray -= bs2; 6100880e062SHong Zhang } 6110880e062SHong Zhang 6120880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6130880e062SHong Zhang col = in[j] - cstart; 6149566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 615f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 616f7d195e4SLawrence Mitchell continue; 617f7d195e4SLawrence Mitchell } else { 618f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6190880e062SHong Zhang if (mat->was_assembled) { 62048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6210880e062SHong Zhang 6220880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 623eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 624b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 6250880e062SHong Zhang #else 626b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 6270880e062SHong Zhang #endif 628f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 6299566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6300880e062SHong Zhang col = in[j]; 6310880e062SHong Zhang } 63226fbe8dcSKarl Rupp } else col = in[j]; 6339566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6340880e062SHong Zhang } 6350880e062SHong Zhang } 6360880e062SHong Zhang } else { 6375f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6380880e062SHong Zhang if (!baij->donotstash) { 6390880e062SHong Zhang if (roworiented) { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410880e062SHong Zhang } else { 6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6430880e062SHong Zhang } 6440880e062SHong Zhang } 6450880e062SHong Zhang } 6460880e062SHong Zhang } 6473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 65066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 651d71ae5a4SJacob Faibussowitsch { 652f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 653d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 654d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay PetscFunctionBegin; 657a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 65854c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 65954c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 660966bd95aSPierre Jolivet PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 661a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 662a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 66354c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66454c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 665a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 666a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6679566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 668a30f8f8cSSatish Balay } else { 66948a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 670a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 671eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 672a30f8f8cSSatish Balay data--; 673a30f8f8cSSatish Balay #else 674a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 675a30f8f8cSSatish Balay #endif 676966bd95aSPierre Jolivet if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0; 677a30f8f8cSSatish Balay else { 678a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6799566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay } 6843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay 68766976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 688d71ae5a4SJacob Faibussowitsch { 689a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 690a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 691a30f8f8cSSatish Balay 692a30f8f8cSSatish Balay PetscFunctionBegin; 693a30f8f8cSSatish Balay if (baij->size == 1) { 6949566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 695a30f8f8cSSatish Balay } else { 696a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 6989566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 6999371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 70075dbe01dSPierre Jolivet lnorm2++; /* square power of norm(A) */ 7019566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7029371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 70375dbe01dSPierre Jolivet lnorm2--; /* square power of norm(B) */ 704462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7058f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7069566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7070b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7080b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7090b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 710e91c04dfSPierre Jolivet PetscReal *rsum, vabs; 711899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 712d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7130b8dc8d2SHong Zhang MatScalar *v; 7140b8dc8d2SHong Zhang 71575dbe01dSPierre Jolivet PetscCall(PetscCalloc1(mat->cmap->N, &rsum)); 7160b8dc8d2SHong Zhang /* Amat */ 7179371c9d4SSatish Balay v = amat->a; 7189371c9d4SSatish Balay jj = amat->j; 7190b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7200b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7210b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7220b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7239371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7249371c9d4SSatish Balay jj++; 7250b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7260b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7279371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7289371c9d4SSatish Balay v++; 7290b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7300b8dc8d2SHong Zhang /* non-diagonal block */ 7310b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7320b8dc8d2SHong Zhang } 7330b8dc8d2SHong Zhang } 7340b8dc8d2SHong Zhang } 7359566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7360b8dc8d2SHong Zhang } 7370b8dc8d2SHong Zhang /* Bmat */ 7389371c9d4SSatish Balay v = bmat->a; 7399371c9d4SSatish Balay jj = bmat->j; 7400b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7410b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7420b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7430b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7449371c9d4SSatish Balay gcol = bs * garray[*jj]; 7459371c9d4SSatish Balay jj++; 7460b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7470b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7489371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7499371c9d4SSatish Balay v++; 7500b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7510b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7520b8dc8d2SHong Zhang } 7530b8dc8d2SHong Zhang } 7540b8dc8d2SHong Zhang } 7559566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7560b8dc8d2SHong Zhang } 757e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7580b8dc8d2SHong Zhang *norm = 0.0; 759d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 760e91c04dfSPierre Jolivet if (rsum[col] > *norm) *norm = rsum[col]; 7610b8dc8d2SHong Zhang } 762e91c04dfSPierre Jolivet PetscCall(PetscFree(rsum)); 763f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 764a30f8f8cSSatish Balay } 7653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay 76866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 769d71ae5a4SJacob Faibussowitsch { 770a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7711302d50aSBarry Smith PetscInt nstash, reallocs; 772a30f8f8cSSatish Balay 773a30f8f8cSSatish Balay PetscFunctionBegin; 7743ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 775a30f8f8cSSatish Balay 7769566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7779566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7789566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7809566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7819566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay 78566976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 786d71ae5a4SJacob Faibussowitsch { 787a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 788a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 78913f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 790e44c0bd4SBarry Smith PetscInt *row, *col; 791c0edf612SJunchao Zhang PetscBool all_assembled; 79213f74950SBarry Smith PetscMPIInt n; 793ace3abfcSBarry Smith PetscBool r1, r2, r3; 794a30f8f8cSSatish Balay MatScalar *val; 795a30f8f8cSSatish Balay 79691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 797a30f8f8cSSatish Balay PetscFunctionBegin; 7984cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 799a30f8f8cSSatish Balay while (1) { 8009566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 801a30f8f8cSSatish Balay if (!flg) break; 802a30f8f8cSSatish Balay 803a30f8f8cSSatish Balay for (i = 0; i < n;) { 804a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 80526fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 80626fbe8dcSKarl Rupp if (row[j] != rstart) break; 80726fbe8dcSKarl Rupp } 808a30f8f8cSSatish Balay if (j < n) ncols = j - i; 809a30f8f8cSSatish Balay else ncols = n - i; 810a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8119566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 812a30f8f8cSSatish Balay i = j; 813a30f8f8cSSatish Balay } 814a30f8f8cSSatish Balay } 8159566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 816a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8175e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 818a30f8f8cSSatish Balay restore the original flags */ 819a30f8f8cSSatish Balay r1 = baij->roworiented; 820a30f8f8cSSatish Balay r2 = a->roworiented; 82191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 82226fbe8dcSKarl Rupp 823a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 824a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 82526fbe8dcSKarl Rupp 826b638e6b4SJunchao Zhang ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworiented */ 827a30f8f8cSSatish Balay while (1) { 8289566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 829a30f8f8cSSatish Balay if (!flg) break; 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay for (i = 0; i < n;) { 832a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 83326fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 83426fbe8dcSKarl Rupp if (row[j] != rstart) break; 83526fbe8dcSKarl Rupp } 836a30f8f8cSSatish Balay if (j < n) ncols = j - i; 837a30f8f8cSSatish Balay else ncols = n - i; 8389566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 839a30f8f8cSSatish Balay i = j; 840a30f8f8cSSatish Balay } 841a30f8f8cSSatish Balay } 8429566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 84326fbe8dcSKarl Rupp 844a30f8f8cSSatish Balay baij->roworiented = r1; 845a30f8f8cSSatish Balay a->roworiented = r2; 84626fbe8dcSKarl Rupp 847b638e6b4SJunchao Zhang ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 848a30f8f8cSSatish Balay } 849a30f8f8cSSatish Balay 8509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 852a30f8f8cSSatish Balay 853b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 8546aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 855a30f8f8cSSatish Balay /* 856a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 857b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 858a30f8f8cSSatish Balay */ 859a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8605440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 861c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay 864ac530a7eSPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ 8659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 867a30f8f8cSSatish Balay 8689566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 86926fbe8dcSKarl Rupp 870f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8714f9cfa9eSBarry Smith 8724f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 873f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 874e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 875462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 876e56f5c9eSBarry Smith } 8773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay 880dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8819804daf3SBarry Smith #include <petscdraw.h> 882d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 883d71ae5a4SJacob Faibussowitsch { 884a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 885d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8867da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 8879f196a02SMartin Diehl PetscBool isascii, isdraw; 888b0a32e0cSBarry Smith PetscViewer sviewer; 889f3ef73ceSBarry Smith PetscViewerFormat format; 890a30f8f8cSSatish Balay 891a30f8f8cSSatish Balay PetscFunctionBegin; 8929f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 8939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 8949f196a02SMartin Diehl if (isascii) { 8959566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 896456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 897a30f8f8cSSatish Balay MatInfo info; 8989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 8999566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9019371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 902835f2295SStefano Zampini mat->rmap->bs, info.memory)); 9039566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9059566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9079566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9109566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 912fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 915c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917a30f8f8cSSatish Balay } 918a30f8f8cSSatish Balay } 919a30f8f8cSSatish Balay 920a30f8f8cSSatish Balay if (isdraw) { 921b0a32e0cSBarry Smith PetscDraw draw; 922ace3abfcSBarry Smith PetscBool isnull; 9239566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9249566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9253ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 926a30f8f8cSSatish Balay } 927a30f8f8cSSatish Balay 9287da1fb6eSBarry Smith { 929a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 930a30f8f8cSSatish Balay Mat A; 93165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 93265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 933d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 934a30f8f8cSSatish Balay MatScalar *a; 9353e219373SBarry Smith const char *matname; 936a30f8f8cSSatish Balay 937f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9389566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 939dd400576SPatrick Sanan if (rank == 0) { 9409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 941a30f8f8cSSatish Balay } else { 9429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 943a30f8f8cSSatish Balay } 9449566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9459566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9469566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 947a30f8f8cSSatish Balay 948a30f8f8cSSatish Balay /* copy over the A part */ 94965d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9509371c9d4SSatish Balay ai = Aloc->i; 9519371c9d4SSatish Balay aj = Aloc->j; 9529371c9d4SSatish Balay a = Aloc->a; 9539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 954a30f8f8cSSatish Balay 955a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 956e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 95726fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 958a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 959e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 960a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9619566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 96226fbe8dcSKarl Rupp col++; 96326fbe8dcSKarl Rupp a += bs; 964a30f8f8cSSatish Balay } 965a30f8f8cSSatish Balay } 966a30f8f8cSSatish Balay } 967a30f8f8cSSatish Balay /* copy over the B part */ 96865d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9699371c9d4SSatish Balay ai = Bloc->i; 9709371c9d4SSatish Balay aj = Bloc->j; 9719371c9d4SSatish Balay a = Bloc->a; 972a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 973e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97426fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 975a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 976a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 977a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9789566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 97926fbe8dcSKarl Rupp col++; 98026fbe8dcSKarl Rupp a += bs; 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay } 9849566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 987a30f8f8cSSatish Balay /* 988a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 989b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 990a30f8f8cSSatish Balay */ 9919566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 99223a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 993dd400576SPatrick Sanan if (rank == 0) { 994f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname)); 995f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer)); 996a30f8f8cSSatish Balay } 9979566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 9989566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 999a30f8f8cSSatish Balay } 10003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1001a30f8f8cSSatish Balay } 1002a30f8f8cSSatish Balay 1003618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1004618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1005d1654148SHong Zhang 100666976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1007d71ae5a4SJacob Faibussowitsch { 10089f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 1009a30f8f8cSSatish Balay 1010a30f8f8cSSatish Balay PetscFunctionBegin; 10119f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 10129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1015ac530a7eSPierre Jolivet if (isascii || isdraw || issocket) PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 1016ac530a7eSPierre Jolivet else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1018a30f8f8cSSatish Balay } 1019a30f8f8cSSatish Balay 1020789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1021789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1022d71ae5a4SJacob Faibussowitsch { 1023547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1024eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10256de40e93SBarry Smith PetscScalar *from; 10266de40e93SBarry Smith const PetscScalar *x; 1027547795f9SHong Zhang 1028547795f9SHong Zhang PetscFunctionBegin; 1029547795f9SHong Zhang /* diagonal part */ 10309566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1031629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1032629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1033629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1034547795f9SHong Zhang 1035547795f9SHong Zhang /* subdiagonal part */ 10365f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10379566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1038547795f9SHong Zhang 1039547795f9SHong Zhang /* copy x into the vec slvec0 */ 10409566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10419566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1042547795f9SHong Zhang 10439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1046547795f9SHong Zhang 10479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10489566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1049547795f9SHong Zhang /* supperdiagonal part */ 10509566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1052547795f9SHong Zhang } 1053789afff4SPierre Jolivet #endif 1054547795f9SHong Zhang 105566976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1056d71ae5a4SJacob Faibussowitsch { 1057a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1058eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1059d9ca1df4SBarry Smith PetscScalar *from; 1060d9ca1df4SBarry Smith const PetscScalar *x; 1061a9d4b620SHong Zhang 1062a9d4b620SHong Zhang PetscFunctionBegin; 1063a9d4b620SHong Zhang /* diagonal part */ 10649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1065629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1066629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1067629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1068a9d4b620SHong Zhang 1069a9d4b620SHong Zhang /* subdiagonal part */ 10709566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1071fc165ae2SBarry Smith 1072a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10739566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10749566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1075a9d4b620SHong Zhang 10769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10789566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1079fc165ae2SBarry Smith 10809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1082a9d4b620SHong Zhang /* supperdiagonal part */ 10839566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1085a9d4b620SHong Zhang } 1086a9d4b620SHong Zhang 108766976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 108866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1089d71ae5a4SJacob Faibussowitsch { 1090eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1091eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1092629a200eSBarry Smith PetscScalar *from; 1093eb1ec7c1SStefano Zampini const PetscScalar *x; 1094eb1ec7c1SStefano Zampini 1095eb1ec7c1SStefano Zampini PetscFunctionBegin; 1096eb1ec7c1SStefano Zampini /* diagonal part */ 10979566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1098629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1099629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1100eb1ec7c1SStefano Zampini 1101eb1ec7c1SStefano Zampini /* subdiagonal part */ 11025f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11039566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1104eb1ec7c1SStefano Zampini 1105eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11069566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11089566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1110eb1ec7c1SStefano Zampini 11119566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11129566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1114eb1ec7c1SStefano Zampini 1115eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11169566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1118eb1ec7c1SStefano Zampini } 111966976f2fSJacob Faibussowitsch #endif 1120eb1ec7c1SStefano Zampini 112166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1122d71ae5a4SJacob Faibussowitsch { 1123de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1124d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1125629a200eSBarry Smith PetscScalar *from; 1126d9ca1df4SBarry Smith const PetscScalar *x; 1127a9d4b620SHong Zhang 1128a9d4b620SHong Zhang PetscFunctionBegin; 1129a9d4b620SHong Zhang /* diagonal part */ 11309566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1131629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1132629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1133a9d4b620SHong Zhang 1134a9d4b620SHong Zhang /* subdiagonal part */ 11359566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1136a9d4b620SHong Zhang 1137a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11389566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11409566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11419566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1142a9d4b620SHong Zhang 11439566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1146a9d4b620SHong Zhang 1147a9d4b620SHong Zhang /* supperdiagonal part */ 11489566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1150a9d4b620SHong Zhang } 1151a9d4b620SHong Zhang 1152a30f8f8cSSatish Balay /* 1153a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1154a30f8f8cSSatish Balay diagonal block 1155a30f8f8cSSatish Balay */ 115666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1157d71ae5a4SJacob Faibussowitsch { 1158a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1159a30f8f8cSSatish Balay 1160a30f8f8cSSatish Balay PetscFunctionBegin; 116108401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11629566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1164a30f8f8cSSatish Balay } 1165a30f8f8cSSatish Balay 116666976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1167d71ae5a4SJacob Faibussowitsch { 1168a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1169a30f8f8cSSatish Balay 1170a30f8f8cSSatish Balay PetscFunctionBegin; 11719566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11729566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1174a30f8f8cSSatish Balay } 1175a30f8f8cSSatish Balay 117666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1177d71ae5a4SJacob Faibussowitsch { 1178d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1179d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1180d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1181d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1182899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1183d0d4cfc2SHong Zhang 1184a30f8f8cSSatish Balay PetscFunctionBegin; 11855f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1186d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1187d0d4cfc2SHong Zhang 1188d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1189d0d4cfc2SHong Zhang /* 1190d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1191d0d4cfc2SHong Zhang */ 1192d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1193d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1194d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1195d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1196d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 119726fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1198d0d4cfc2SHong Zhang } 11999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1200d0d4cfc2SHong Zhang } 1201d0d4cfc2SHong Zhang 12025f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1203d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1204d0d4cfc2SHong Zhang 12059371c9d4SSatish Balay pvA = &vworkA; 12069371c9d4SSatish Balay pcA = &cworkA; 12079371c9d4SSatish Balay pvB = &vworkB; 12089371c9d4SSatish Balay pcB = &cworkB; 12099371c9d4SSatish Balay if (!v) { 12109371c9d4SSatish Balay pvA = NULL; 12119371c9d4SSatish Balay pvB = NULL; 12129371c9d4SSatish Balay } 12139371c9d4SSatish Balay if (!idx) { 12149371c9d4SSatish Balay pcA = NULL; 12159371c9d4SSatish Balay if (!v) pcB = NULL; 12169371c9d4SSatish Balay } 12179566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12189566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1219d0d4cfc2SHong Zhang nztot = nzA + nzB; 1220d0d4cfc2SHong Zhang 1221d0d4cfc2SHong Zhang cmap = mat->garray; 1222d0d4cfc2SHong Zhang if (v || idx) { 1223d0d4cfc2SHong Zhang if (nztot) { 1224d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1225d0d4cfc2SHong Zhang PetscInt imark = -1; 1226d0d4cfc2SHong Zhang if (v) { 1227d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1228d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1229d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1230d0d4cfc2SHong Zhang else break; 1231d0d4cfc2SHong Zhang } 1232d0d4cfc2SHong Zhang imark = i; 1233d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1234d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1235d0d4cfc2SHong Zhang } 1236d0d4cfc2SHong Zhang if (idx) { 1237d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1238d0d4cfc2SHong Zhang if (imark > -1) { 1239ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1240d0d4cfc2SHong Zhang } else { 1241d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 124226fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1243d0d4cfc2SHong Zhang else break; 1244d0d4cfc2SHong Zhang } 1245d0d4cfc2SHong Zhang imark = i; 1246d0d4cfc2SHong Zhang } 1247d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1248d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1249d0d4cfc2SHong Zhang } 1250d0d4cfc2SHong Zhang } else { 1251f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1252f4259b30SLisandro Dalcin if (v) *v = NULL; 1253d0d4cfc2SHong Zhang } 1254d0d4cfc2SHong Zhang } 1255d0d4cfc2SHong Zhang *nz = nztot; 12569566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12579566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1259a30f8f8cSSatish Balay } 1260a30f8f8cSSatish Balay 126166976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1262d71ae5a4SJacob Faibussowitsch { 1263a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1264a30f8f8cSSatish Balay 1265a30f8f8cSSatish Balay PetscFunctionBegin; 12665f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1267a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1269a30f8f8cSSatish Balay } 1270a30f8f8cSSatish Balay 127166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1272d71ae5a4SJacob Faibussowitsch { 1273d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1274d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1275d0d4cfc2SHong Zhang 1276d0d4cfc2SHong Zhang PetscFunctionBegin; 1277d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1279d0d4cfc2SHong Zhang } 128066976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1281d71ae5a4SJacob Faibussowitsch { 1282d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1283d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1284d0d4cfc2SHong Zhang 1285d0d4cfc2SHong Zhang PetscFunctionBegin; 1286d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 12873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1288d0d4cfc2SHong Zhang } 1289d0d4cfc2SHong Zhang 129066976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1291d71ae5a4SJacob Faibussowitsch { 12925f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12935f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 12942726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 12952726fb6dSPierre Jolivet 12969566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 12979566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 12985f80ce2aSJacob Faibussowitsch } 12993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13002726fb6dSPierre Jolivet } 13012726fb6dSPierre Jolivet 130266976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1303d71ae5a4SJacob Faibussowitsch { 130499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 130599cafbc1SBarry Smith 130699cafbc1SBarry Smith PetscFunctionBegin; 13079566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13089566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131099cafbc1SBarry Smith } 131199cafbc1SBarry Smith 131266976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1313d71ae5a4SJacob Faibussowitsch { 131499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 131599cafbc1SBarry Smith 131699cafbc1SBarry Smith PetscFunctionBegin; 13179566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13189566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132099cafbc1SBarry Smith } 132199cafbc1SBarry Smith 13227dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 132336032a97SHong Zhang Input: isrow - distributed(parallel), 132436032a97SHong Zhang iscol_local - locally owned (seq) 132536032a97SHong Zhang */ 132666976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1327d71ae5a4SJacob Faibussowitsch { 13288f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13298f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 133036032a97SHong Zhang 133136032a97SHong Zhang PetscFunctionBegin; 133266976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13339566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13349566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 133566976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13368f46ffcaSHong Zhang 13379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13398f46ffcaSHong Zhang 13409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13449566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13459566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13468f46ffcaSHong Zhang 13478f46ffcaSHong Zhang nmatch = 0; 13488f46ffcaSHong Zhang k = 0; 13498f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13508f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13518f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13529371c9d4SSatish Balay k = j; 13539371c9d4SSatish Balay nmatch++; 13548f46ffcaSHong Zhang break; 13558f46ffcaSHong Zhang } 13568f46ffcaSHong Zhang } 13578f46ffcaSHong Zhang } 13589566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13599566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13609566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13619566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13621098a8e8SHong Zhang if (nmatch < sz1) { 13631098a8e8SHong Zhang *flg = PETSC_FALSE; 13641098a8e8SHong Zhang } else { 13651098a8e8SHong Zhang *flg = PETSC_TRUE; 13661098a8e8SHong Zhang } 13673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13688f46ffcaSHong Zhang } 136936032a97SHong Zhang 137066976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1371d71ae5a4SJacob Faibussowitsch { 1372fdfbdca6SPierre Jolivet Mat C[2]; 1373fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1374fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1375fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 137636032a97SHong Zhang 137736032a97SHong Zhang PetscFunctionBegin; 13789566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1379fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 138036032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13819566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13825f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 138336032a97SHong Zhang } else { 13849566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13859566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1386fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 13878f46ffcaSHong Zhang } 1388fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1389fdfbdca6SPierre Jolivet if (!isequal) { 1390fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1391fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1392fdfbdca6SPierre Jolivet if (!isidentity) { 1393fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1394fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1395fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1396fdfbdca6SPierre Jolivet } else { 1397fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1398fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1399fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1400fdfbdca6SPierre Jolivet } 1401fdfbdca6SPierre Jolivet } 1402fdfbdca6SPierre Jolivet } 14037dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1404fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1405fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14068f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1407fdfbdca6SPierre Jolivet IS intersect; 1408fdfbdca6SPierre Jolivet PetscInt ni; 1409fdfbdca6SPierre Jolivet 1410fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1411fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1412fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1413fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1414fdfbdca6SPierre Jolivet } 1415fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1416fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1417fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1418fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1419fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1420fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1421fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1422fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1423fdfbdca6SPierre Jolivet } 1424fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1425fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1426fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1427fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1428fdfbdca6SPierre Jolivet } 14299566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14318f46ffcaSHong Zhang } 14323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14338f46ffcaSHong Zhang } 14348f46ffcaSHong Zhang 143566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1436d71ae5a4SJacob Faibussowitsch { 1437a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1438a30f8f8cSSatish Balay 1439a30f8f8cSSatish Balay PetscFunctionBegin; 14409566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14419566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1443a30f8f8cSSatish Balay } 1444a30f8f8cSSatish Balay 144566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1446d71ae5a4SJacob Faibussowitsch { 1447a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1448a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14493966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1450a30f8f8cSSatish Balay 1451a30f8f8cSSatish Balay PetscFunctionBegin; 1452d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 145326fbe8dcSKarl Rupp 14549566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 145526fbe8dcSKarl Rupp 14569371c9d4SSatish Balay isend[0] = info->nz_used; 14579371c9d4SSatish Balay isend[1] = info->nz_allocated; 14589371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14599371c9d4SSatish Balay isend[3] = info->memory; 14609371c9d4SSatish Balay isend[4] = info->mallocs; 146126fbe8dcSKarl Rupp 14629566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 146326fbe8dcSKarl Rupp 14649371c9d4SSatish Balay isend[0] += info->nz_used; 14659371c9d4SSatish Balay isend[1] += info->nz_allocated; 14669371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14679371c9d4SSatish Balay isend[3] += info->memory; 14689371c9d4SSatish Balay isend[4] += info->mallocs; 1469a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1470a30f8f8cSSatish Balay info->nz_used = isend[0]; 1471a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1472a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1473a30f8f8cSSatish Balay info->memory = isend[3]; 1474a30f8f8cSSatish Balay info->mallocs = isend[4]; 1475a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1476462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 147726fbe8dcSKarl Rupp 1478a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1479a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1480a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1481a30f8f8cSSatish Balay info->memory = irecv[3]; 1482a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1483a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1484462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 148526fbe8dcSKarl Rupp 1486a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1487a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1488a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1489a30f8f8cSSatish Balay info->memory = irecv[3]; 1490a30f8f8cSSatish Balay info->mallocs = irecv[4]; 149198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1492a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1493a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1494a30f8f8cSSatish Balay info->factor_mallocs = 0; 14953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1496a30f8f8cSSatish Balay } 1497a30f8f8cSSatish Balay 149866976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1499d71ae5a4SJacob Faibussowitsch { 1500a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1501d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1502a30f8f8cSSatish Balay 1503a30f8f8cSSatish Balay PetscFunctionBegin; 1504e98b92d7SKris Buschelman switch (op) { 1505512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1506e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 150728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1508a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1509e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 151043674050SBarry Smith MatCheckPreallocated(A, 1); 15119566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15129566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1513e98b92d7SKris Buschelman break; 1514e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 151543674050SBarry Smith MatCheckPreallocated(A, 1); 15164e0d8c25SBarry Smith a->roworiented = flg; 151726fbe8dcSKarl Rupp 15189566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15199566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1520e98b92d7SKris Buschelman break; 1521d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1522d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1523d71ae5a4SJacob Faibussowitsch break; 1524d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1525d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1526d71ae5a4SJacob Faibussowitsch break; 1527d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 15289725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 15290f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1530eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1531547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1532eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1533eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1534eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1535eb1ec7c1SStefano Zampini } 15360f2140c7SStefano Zampini #endif 1537eeffb40dSHong Zhang break; 1538ffa07934SHong Zhang case MAT_SPD: 1539d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 15409725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1541eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1542eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1543eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1544eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1545eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1546eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1547eb1ec7c1SStefano Zampini } 1548eb1ec7c1SStefano Zampini #endif 1549eeffb40dSHong Zhang break; 155077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15519725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1552eeffb40dSHong Zhang break; 1553d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1554d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1555d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1556d71ae5a4SJacob Faibussowitsch break; 1557d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1558d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1559d71ae5a4SJacob Faibussowitsch break; 1560d71ae5a4SJacob Faibussowitsch default: 1561888c827cSStefano Zampini break; 1562a30f8f8cSSatish Balay } 15633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1564a30f8f8cSSatish Balay } 1565a30f8f8cSSatish Balay 156666976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1567d71ae5a4SJacob Faibussowitsch { 1568a30f8f8cSSatish Balay PetscFunctionBegin; 15697fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1570cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15719566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1572cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15739566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1574fc4dec0aSBarry Smith } 15753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1576a30f8f8cSSatish Balay } 1577a30f8f8cSSatish Balay 157866976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1579d71ae5a4SJacob Faibussowitsch { 1580a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1581a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 15825e90f9d9SHong Zhang PetscInt nv, m, n; 1583ace3abfcSBarry Smith PetscBool flg; 1584a30f8f8cSSatish Balay 1585a30f8f8cSSatish Balay PetscFunctionBegin; 1586a30f8f8cSSatish Balay if (ll != rr) { 15879566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 15885f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1589a30f8f8cSSatish Balay } 15903ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1591b3bf805bSHong Zhang 15929566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 15935f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1594b3bf805bSHong Zhang 15959566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 15965f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 15975e90f9d9SHong Zhang 15989566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 15995e90f9d9SHong Zhang 16005e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1601dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16025e90f9d9SHong Zhang 16035e90f9d9SHong Zhang /* scale the diagonal part */ 1604dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1605a30f8f8cSSatish Balay 16065e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16079566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1608dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1610a30f8f8cSSatish Balay } 1611a30f8f8cSSatish Balay 161266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1613d71ae5a4SJacob Faibussowitsch { 1614f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1615a30f8f8cSSatish Balay 1616a30f8f8cSSatish Balay PetscFunctionBegin; 16179566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1619a30f8f8cSSatish Balay } 1620a30f8f8cSSatish Balay 16216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1622a30f8f8cSSatish Balay 162366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1624d71ae5a4SJacob Faibussowitsch { 1625a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1626a30f8f8cSSatish Balay Mat a, b, c, d; 1627ace3abfcSBarry Smith PetscBool flg; 1628a30f8f8cSSatish Balay 1629a30f8f8cSSatish Balay PetscFunctionBegin; 16309371c9d4SSatish Balay a = matA->A; 16319371c9d4SSatish Balay b = matA->B; 16329371c9d4SSatish Balay c = matB->A; 16339371c9d4SSatish Balay d = matB->B; 1634a30f8f8cSSatish Balay 16359566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 163648a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 16375440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1639a30f8f8cSSatish Balay } 1640a30f8f8cSSatish Balay 164166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1642d71ae5a4SJacob Faibussowitsch { 16434c7a3774SStefano Zampini PetscBool isbaij; 16443c896bc6SHong Zhang 16453c896bc6SHong Zhang PetscFunctionBegin; 16469566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16475f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16483c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16493c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16509566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16519566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16529566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16533c896bc6SHong Zhang } else { 16544c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16554c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16564c7a3774SStefano Zampini 16579566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16589566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16593c896bc6SHong Zhang } 16609566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16623c896bc6SHong Zhang } 16633c896bc6SHong Zhang 166466976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1665d71ae5a4SJacob Faibussowitsch { 16664fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16674fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16684fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16694fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16704fe895cdSHong Zhang 16714fe895cdSHong Zhang PetscFunctionBegin; 16724fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16734fe895cdSHong Zhang PetscScalar alpha = a; 16744fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16754fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16769566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1677792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16784fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16794fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16809566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1681792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 16829566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1683ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16849566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 16859566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 16869566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 16874fe895cdSHong Zhang } else { 16884de5dceeSHong Zhang Mat B; 16894de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 16905f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 16919566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16929566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 16949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 16959566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 16969566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 16979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 16989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 16999566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17009566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17019566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17029566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17039566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17049566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17059566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17069566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17079566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17089566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17094fe895cdSHong Zhang } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17114fe895cdSHong Zhang } 17124fe895cdSHong Zhang 171366976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1714d71ae5a4SJacob Faibussowitsch { 17151302d50aSBarry Smith PetscInt i; 1716afebec48SHong Zhang PetscBool flg; 1717a5e6ed63SBarry Smith 17186849ba73SBarry Smith PetscFunctionBegin; 17199566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1720a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17219566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 172248a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17234dcd73b1SHong Zhang } 17243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1725a5e6ed63SBarry Smith } 1726a5e6ed63SBarry Smith 172766976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1728d71ae5a4SJacob Faibussowitsch { 17297d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17306f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17317d68702bSBarry Smith 17327d68702bSBarry Smith PetscFunctionBegin; 17336f33a894SBarry Smith if (!Y->preallocated) { 17349566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17356f33a894SBarry Smith } else if (!aij->nz) { 1736b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17379566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1738b83222d8SBarry Smith aij->nonew = nonew; 17397d68702bSBarry Smith } 17409566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17427d68702bSBarry Smith } 17437d68702bSBarry Smith 174466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1745d71ae5a4SJacob Faibussowitsch { 1746a5b7ff6bSBarry Smith PetscFunctionBegin; 1747a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1749a5b7ff6bSBarry Smith } 17503b49f96aSBarry Smith 175117ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 175217ea310bSPierre Jolivet { 175317ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 175417ea310bSPierre Jolivet 175517ea310bSPierre Jolivet PetscFunctionBegin; 175617ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 175717ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 175817ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 175917ea310bSPierre Jolivet } 176017ea310bSPierre Jolivet 17616cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer); 1762789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]); 1763789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 17646cff0a6bSPierre Jolivet 17653964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1766a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1767a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1768a9d4b620SHong Zhang MatMult_MPISBAIJ, 176997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1770431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1771431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1772f4259b30SLisandro Dalcin NULL, 1773f4259b30SLisandro Dalcin NULL, 1774f4259b30SLisandro Dalcin NULL, 1775f4259b30SLisandro Dalcin /* 10*/ NULL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 177841f059aeSBarry Smith MatSOR_MPISBAIJ, 1779a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 178097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1781a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1782a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1783a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1784a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 178597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1786a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1787a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1788a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1789f4259b30SLisandro Dalcin /* 24*/ NULL, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 179426cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1795f4259b30SLisandro Dalcin NULL, 1796f4259b30SLisandro Dalcin NULL, 1797a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1798f4259b30SLisandro Dalcin NULL, 1799d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin NULL, 1804d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18057dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1806d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1807a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18083c896bc6SHong Zhang MatCopy_MPISBAIJ, 1809f4259b30SLisandro Dalcin /* 44*/ NULL, 1810a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18117d68702bSBarry Smith MatShift_MPISBAIJ, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 1814f4259b30SLisandro Dalcin /* 49*/ NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin /* 54*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1822f4259b30SLisandro Dalcin NULL, 1823a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18247dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin /* 64*/ NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 18338bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPISBAIJ, 18348bb0f5c6SPierre Jolivet /* 69*/ NULL, 183528d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 18435bba2384SShri Abhyankar MatLoad_MPISBAIJ, 18448bb0f5c6SPierre Jolivet /* 79*/ NULL, 18458bb0f5c6SPierre Jolivet NULL, 18468bb0f5c6SPierre Jolivet NULL, 18478bb0f5c6SPierre Jolivet NULL, 18488bb0f5c6SPierre Jolivet NULL, 1849f4259b30SLisandro Dalcin /* 84*/ NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin /* 89*/ NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 18588bb0f5c6SPierre Jolivet MatConjugate_MPISBAIJ, 1859f4259b30SLisandro Dalcin /* 94*/ NULL, 1860f4259b30SLisandro Dalcin NULL, 186199cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1862d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1863d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 18648bb0f5c6SPierre Jolivet /* 99*/ MatRestoreRowUpperTriangular_MPISBAIJ, 18658bb0f5c6SPierre Jolivet NULL, 18668bb0f5c6SPierre Jolivet NULL, 18678bb0f5c6SPierre Jolivet NULL, 18688bb0f5c6SPierre Jolivet NULL, 1869421480d9SBarry Smith /*104*/ NULL, 18708bb0f5c6SPierre Jolivet NULL, 18718bb0f5c6SPierre Jolivet NULL, 18728bb0f5c6SPierre Jolivet NULL, 18738bb0f5c6SPierre Jolivet NULL, 1874f4259b30SLisandro Dalcin /*109*/ NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 18788bb0f5c6SPierre Jolivet NULL, 1879f4259b30SLisandro Dalcin /*114*/ NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 1884f4259b30SLisandro Dalcin /*119*/ NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin /*124*/ NULL, 1890f4259b30SLisandro Dalcin NULL, 18918bb0f5c6SPierre Jolivet MatSetBlockSizes_Default, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin NULL, 1894421480d9SBarry Smith /*129*/ NULL, 18958bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898421480d9SBarry Smith NULL, 1899f4259b30SLisandro Dalcin /*134*/ NULL, 1900f4259b30SLisandro Dalcin NULL, 1901eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 19024cc2b5b5SPierre Jolivet NULL, 190342ce410bSJunchao Zhang NULL, 1904421480d9SBarry Smith /*139*/ NULL, 190542ce410bSJunchao Zhang NULL, 190603db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 1907c2be7ffeSStefano Zampini NULL, 190803db1824SAlex Lindsay NULL}; 1909a30f8f8cSSatish Balay 191066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1911d71ae5a4SJacob Faibussowitsch { 1912476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1913535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19145d2a9ed1SStefano Zampini PetscMPIInt size; 1915a23d5eceSKris Buschelman 1916a23d5eceSKris Buschelman PetscFunctionBegin; 1917ad79cf63SBarry Smith if (B->hash_active) { 1918aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1919ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1920ad79cf63SBarry Smith } 1921ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 192258b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs)); 19239566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19249566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19259566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19265f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19275f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1928899cda47SBarry Smith 1929d0f46423SBarry Smith mbs = B->rmap->n / bs; 1930d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19315f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1932a23d5eceSKris Buschelman 1933d0f46423SBarry Smith B->rmap->bs = bs; 1934a23d5eceSKris Buschelman b->bs2 = bs * bs; 1935a23d5eceSKris Buschelman b->mbs = mbs; 1936a23d5eceSKris Buschelman b->Mbs = Mbs; 1937de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1938de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1939a23d5eceSKris Buschelman 1940ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1941d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1942d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1943a23d5eceSKris Buschelman 1944d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1945d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1946a23d5eceSKris Buschelman 1947cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1948eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 1949cb7b82ddSBarry Smith #else 19509566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1951cb7b82ddSBarry Smith #endif 19529566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 19549566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 19559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 19569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 19579566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 19589566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 19599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 19609566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1961cb7b82ddSBarry Smith 19629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 1963c508b908SBarry Smith 1964c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 19659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19669566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 19679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 19689566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 1969c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 1970cb7b82ddSBarry Smith 1971c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 1972ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 19739566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 19749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 19759566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 1976c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 1977a23d5eceSKris Buschelman 19789566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 19799566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 198026fbe8dcSKarl Rupp 1981526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1982cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1983cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 19843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1985a23d5eceSKris Buschelman } 1986a23d5eceSKris Buschelman 198766976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 1988d71ae5a4SJacob Faibussowitsch { 198902106b30SBarry Smith PetscInt m, rstart, cend; 1990f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 1991f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 1992f4259b30SLisandro Dalcin PetscScalar *values = NULL; 1993bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 19943bd0feecSPierre Jolivet PetscBool nooffprocentries; 1995dfb205c3SBarry Smith 1996dfb205c3SBarry Smith PetscFunctionBegin; 19975f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 19989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 19999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20029566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2003dfb205c3SBarry Smith m = B->rmap->n / bs; 2004dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2005dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2006dfb205c3SBarry Smith 20075f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2009dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2010dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20115f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20124cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2013dfb205c3SBarry Smith JJ = jj + ii[i]; 20140cd7f59aSBarry Smith bd = 0; 2015dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20160cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2017dfb205c3SBarry Smith JJ++; 20180cd7f59aSBarry Smith bd++; 2019dfb205c3SBarry Smith } 2020dfb205c3SBarry Smith d = 0; 2021dfb205c3SBarry Smith for (; j < nz; j++) { 2022dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2023dfb205c3SBarry Smith d++; 2024dfb205c3SBarry Smith } 2025dfb205c3SBarry Smith d_nnz[i] = d; 20260cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20270cd7f59aSBarry Smith nz = nz - bd; 20280cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2029dfb205c3SBarry Smith } 20309566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20329566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2033dfb205c3SBarry Smith 2034dfb205c3SBarry Smith values = (PetscScalar *)V; 203548a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2036dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2037dfb205c3SBarry Smith PetscInt row = i + rstart; 2038dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2039dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2040bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2041dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20429566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2043bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2044bb80cfbbSStefano Zampini PetscInt j; 20450cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20460cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20479566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20480cd7f59aSBarry Smith } 20490cd7f59aSBarry Smith } 2050dfb205c3SBarry Smith } 2051dfb205c3SBarry Smith 20529566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20533bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20543bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 20559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 20569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 20573bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20583bd0feecSPierre Jolivet 20599566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 20603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2061dfb205c3SBarry Smith } 2062dfb205c3SBarry Smith 20630bad9183SKris Buschelman /*MC 2064fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2065828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2066828413b8SBarry Smith the matrix is stored. 2067828413b8SBarry Smith 2068828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 206911a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 20700bad9183SKris Buschelman 20712ef1f0ffSBarry Smith Options Database Key: 207211a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 20730bad9183SKris Buschelman 20742ef1f0ffSBarry Smith Level: beginner 20752ef1f0ffSBarry Smith 207611a5261eSBarry Smith Note: 2077476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2078476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2079476417e5SBarry Smith 20801cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20810bad9183SKris Buschelman M*/ 20820bad9183SKris Buschelman 2083d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2084d71ae5a4SJacob Faibussowitsch { 2085b5df2d14SHong Zhang Mat_MPISBAIJ *b; 208694ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2087b5df2d14SHong Zhang 2088b5df2d14SHong Zhang PetscFunctionBegin; 20894dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2090b0a32e0cSBarry Smith B->data = (void *)b; 2091aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2092b5df2d14SHong Zhang 2093b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2094b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2095b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2096b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 209726fbe8dcSKarl Rupp 20989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 20999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2100b5df2d14SHong Zhang 2101b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2103b5df2d14SHong Zhang 2104b5df2d14SHong Zhang /* build cache for off array entries formed */ 21059566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 210626fbe8dcSKarl Rupp 2107b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21080298fd71SBarry Smith b->colmap = NULL; 21090298fd71SBarry Smith b->garray = NULL; 2110b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2111b5df2d14SHong Zhang 2112b5df2d14SHong Zhang /* stuff used in block assembly */ 2113f4259b30SLisandro Dalcin b->barray = NULL; 2114b5df2d14SHong Zhang 2115b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2116f4259b30SLisandro Dalcin b->lvec = NULL; 2117f4259b30SLisandro Dalcin b->Mvctx = NULL; 2118f4259b30SLisandro Dalcin b->slvec0 = NULL; 2119f4259b30SLisandro Dalcin b->slvec0b = NULL; 2120f4259b30SLisandro Dalcin b->slvec1 = NULL; 2121f4259b30SLisandro Dalcin b->slvec1a = NULL; 2122f4259b30SLisandro Dalcin b->slvec1b = NULL; 2123f4259b30SLisandro Dalcin b->sMvctx = NULL; 2124b5df2d14SHong Zhang 2125b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2126f4259b30SLisandro Dalcin b->rowindices = NULL; 2127f4259b30SLisandro Dalcin b->rowvalues = NULL; 2128b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2129b5df2d14SHong Zhang 2130b5df2d14SHong Zhang /* hash table stuff */ 2131f4259b30SLisandro Dalcin b->ht = NULL; 2132f4259b30SLisandro Dalcin b->hd = NULL; 2133b5df2d14SHong Zhang b->ht_size = 0; 2134b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2135b5df2d14SHong Zhang b->ht_fact = 0; 2136b5df2d14SHong Zhang b->ht_total_ct = 0; 2137b5df2d14SHong Zhang b->ht_insert_ct = 0; 2138b5df2d14SHong Zhang 21397dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21407a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21417a868f3eSHong Zhang 2142f4259b30SLisandro Dalcin b->in_loc = NULL; 2143f4259b30SLisandro Dalcin b->v_loc = NULL; 214459ffdab8SBarry Smith b->n_loc = 0; 214594ae4db5SBarry Smith 21469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21506214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 21526214f412SHong Zhang #endif 2153d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 21549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2155d24d4204SJose E. Roman #endif 21569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 21579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2158aa5a9175SDahai Guo 2159b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2160b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2161b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2162b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2163*b0c98d1dSPierre Jolivet #if !defined(PETSC_USE_COMPLEX) 2164b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2165eb1ec7c1SStefano Zampini #endif 216613647f61SHong Zhang 21679566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2168d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 21699566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 217094ae4db5SBarry Smith if (flg) { 217194ae4db5SBarry Smith PetscReal fact = 1.39; 21729566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 21739566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 217494ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21759566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 21769566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 217794ae4db5SBarry Smith } 2178d0609cedSBarry Smith PetscOptionsEnd(); 21793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2180b5df2d14SHong Zhang } 2181b5df2d14SHong Zhang 21822920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2183209238afSKris Buschelman /*MC 2184002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2185209238afSKris Buschelman 218611a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 218711a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2188209238afSKris Buschelman 218911a5261eSBarry Smith Options Database Key: 2190c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2191209238afSKris Buschelman 2192209238afSKris Buschelman Level: beginner 2193209238afSKris Buschelman 21941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2195209238afSKris Buschelman M*/ 2196209238afSKris Buschelman 21975d83a8b1SBarry Smith /*@ 2198b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2199b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2200b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2201b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2202b5df2d14SHong Zhang 2203c3339decSBarry Smith Collective 2204b5df2d14SHong Zhang 2205b5df2d14SHong Zhang Input Parameters: 22061c4f3114SJed Brown + B - the matrix 2207bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2208bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2209b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2210b5df2d14SHong Zhang submatrix (same for all local rows) 2211b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22126d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22132ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 221495742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2215b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2216b5df2d14SHong Zhang submatrix (same for all local rows). 2217b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2218c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22192ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2220b5df2d14SHong Zhang 2221b5df2d14SHong Zhang Options Database Keys: 2222a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2223b5df2d14SHong Zhang block calculations (much slower) 2224a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2225b5df2d14SHong Zhang 22262ef1f0ffSBarry Smith Level: intermediate 22272ef1f0ffSBarry Smith 2228b5df2d14SHong Zhang Notes: 2229b5df2d14SHong Zhang 223011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2231b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2232b5df2d14SHong Zhang 223349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 223449a6f317SBarry Smith 2235b5df2d14SHong Zhang Storage Information: 2236b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2237b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2238b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2239b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2240b5df2d14SHong Zhang 2241b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22422ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22432ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2244b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22452ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2246b5df2d14SHong Zhang 224711a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2248aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 22492ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2250aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2251aa95bbe8SBarry Smith 2252b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2253b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2254b5df2d14SHong Zhang 2255b5df2d14SHong Zhang .vb 2256b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2257a4b1a0f6SJed Brown -------------------------- 2258c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2259c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2260c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2261a4b1a0f6SJed Brown -------------------------- 2262b5df2d14SHong Zhang .ve 2263b5df2d14SHong Zhang 2264b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2265b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22666d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 226711a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2268b5df2d14SHong Zhang 22692ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 22706d10fdaeSSatish Balay plus the diagonal part of the d matrix, 22712ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2272c2fc9fa9SBarry Smith 2273b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 22742ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2275b5df2d14SHong Zhang 22761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2277b5df2d14SHong Zhang @*/ 2278d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2279d71ae5a4SJacob Faibussowitsch { 2280b5df2d14SHong Zhang PetscFunctionBegin; 22816ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 22826ba663aaSJed Brown PetscValidType(B, 1); 22836ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2284cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 22853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2286b5df2d14SHong Zhang } 2287b5df2d14SHong Zhang 22882920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 22895d83a8b1SBarry Smith /*@ 229011a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2291a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2292a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 229320f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2294a30f8f8cSSatish Balay 2295d083f849SBarry Smith Collective 2296a30f8f8cSSatish Balay 2297a30f8f8cSSatish Balay Input Parameters: 2298a30f8f8cSSatish Balay + comm - MPI communicator 229911a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 230020f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 230120f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2302a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2303a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 230420f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2305a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2306a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 230720f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 230820f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2309a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2310a30f8f8cSSatish Balay submatrix (same for all local rows) 2311a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23126d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23132ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 231495742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 231595742e49SBarry Smith set its value even if it is zero. 2316a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2317a30f8f8cSSatish Balay submatrix (same for all local rows). 2318a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2319a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23202ef1f0ffSBarry Smith each block row) or `NULL`. 2321a30f8f8cSSatish Balay 2322a30f8f8cSSatish Balay Output Parameter: 2323a30f8f8cSSatish Balay . A - the matrix 2324a30f8f8cSSatish Balay 2325a30f8f8cSSatish Balay Options Database Keys: 2326a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2327a30f8f8cSSatish Balay block calculations (much slower) 2328a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2329a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2330a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2331a30f8f8cSSatish Balay 23322ef1f0ffSBarry Smith Level: intermediate 23332ef1f0ffSBarry Smith 23342ef1f0ffSBarry Smith Notes: 233577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2336f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 233711a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2338175b88e8SBarry Smith 2339d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23406d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2341d1be2dadSMatthew Knepley 2342a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2343a30f8f8cSSatish Balay (possibly both). 2344a30f8f8cSSatish Balay 234511a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2346a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2347a30f8f8cSSatish Balay 2348727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by 2349727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 2350727bdf9bSBarry Smith 235149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 235249a6f317SBarry Smith 2353a30f8f8cSSatish Balay Storage Information: 2354a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2355a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2356a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2357a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2358a30f8f8cSSatish Balay 2359a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 23602ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 23612ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2362a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 23632ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2364a30f8f8cSSatish Balay 2365a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2366a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2367a30f8f8cSSatish Balay 2368a30f8f8cSSatish Balay .vb 2369a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2370a4b1a0f6SJed Brown -------------------------- 2371c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2372c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2373c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2374a4b1a0f6SJed Brown -------------------------- 2375a30f8f8cSSatish Balay .ve 2376a30f8f8cSSatish Balay 2377a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2378a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23796d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23802ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2381a30f8f8cSSatish Balay 23822ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23836d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23842ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2385a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 23862ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2387a30f8f8cSSatish Balay 2388727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, 2389727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 2390a30f8f8cSSatish Balay @*/ 2391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2392d71ae5a4SJacob Faibussowitsch { 23931302d50aSBarry Smith PetscMPIInt size; 2394a30f8f8cSSatish Balay 2395a30f8f8cSSatish Balay PetscFunctionBegin; 23969566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 23979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 23989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2399273d9f13SBarry Smith if (size > 1) { 24009566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24019566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2402273d9f13SBarry Smith } else { 24039566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24049566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2405273d9f13SBarry Smith } 24063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2407a30f8f8cSSatish Balay } 2408a30f8f8cSSatish Balay 2409d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2410d71ae5a4SJacob Faibussowitsch { 2411a30f8f8cSSatish Balay Mat mat; 2412a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2413d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2414387bc808SHong Zhang PetscScalar *array; 2415a30f8f8cSSatish Balay 2416a30f8f8cSSatish Balay PetscFunctionBegin; 2417f4259b30SLisandro Dalcin *newmat = NULL; 241826fbe8dcSKarl Rupp 24199566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24219566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24229566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24239566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2424e1b6402fSHong Zhang 2425420957c1SBarry Smith if (matin->hash_active) { 2426420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2427420957c1SBarry Smith } else { 2428d5f3da31SBarry Smith mat->factortype = matin->factortype; 2429273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 243082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24317fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24327fff6886SHong Zhang 2433b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2434a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2435a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2436a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2437a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2438a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2439a30f8f8cSSatish Balay 2440a30f8f8cSSatish Balay a->size = oldmat->size; 2441a30f8f8cSSatish Balay a->rank = oldmat->rank; 2442a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2443a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2444f4259b30SLisandro Dalcin a->rowindices = NULL; 2445f4259b30SLisandro Dalcin a->rowvalues = NULL; 2446a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2447f4259b30SLisandro Dalcin a->barray = NULL; 2448899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2449899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2450899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2451899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2452a30f8f8cSSatish Balay 2453a30f8f8cSSatish Balay /* hash table stuff */ 2454f4259b30SLisandro Dalcin a->ht = NULL; 2455f4259b30SLisandro Dalcin a->hd = NULL; 2456a30f8f8cSSatish Balay a->ht_size = 0; 2457a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2458a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2459a30f8f8cSSatish Balay a->ht_total_ct = 0; 2460a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2461a30f8f8cSSatish Balay 24629566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2463a30f8f8cSSatish Balay if (oldmat->colmap) { 2464a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2465eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2466a30f8f8cSSatish Balay #else 24679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 24689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2469a30f8f8cSSatish Balay #endif 2470f4259b30SLisandro Dalcin } else a->colmap = NULL; 2471387bc808SHong Zhang 2472f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 24739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 24749566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2475f4259b30SLisandro Dalcin } else a->garray = NULL; 2476a30f8f8cSSatish Balay 24779566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 24789566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 24799566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 248082327fa8SHong Zhang 24819566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 24829566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2483387bc808SHong Zhang 24849566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 24859566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 24889566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 24899566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 24909566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 24919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2492387bc808SHong Zhang 2493387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 24949566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2495387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 249682327fa8SHong Zhang 24979566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 24989566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2499420957c1SBarry Smith } 25009566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2501a30f8f8cSSatish Balay *newmat = mat; 25023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2503a30f8f8cSSatish Balay } 2504a30f8f8cSSatish Balay 2505618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2506618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2507618cc2edSLisandro Dalcin 25086cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2509d71ae5a4SJacob Faibussowitsch { 25107f489da9SVaclav Hapla PetscBool isbinary; 251195936485SShri Abhyankar 251295936485SShri Abhyankar PetscFunctionBegin; 25139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25145f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25159566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 251795936485SShri Abhyankar } 251895936485SShri Abhyankar 2519789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2520d71ae5a4SJacob Faibussowitsch { 252124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2522f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data; 2523ca54ac64SHong Zhang PetscReal atmp; 252487828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25251302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25261302d50aSBarry Smith PetscMPIInt rank, size; 25276497c311SBarry Smith PetscInt *rowners_bs, count, source; 252887828ca2SBarry Smith PetscScalar *va; 25298a1c53f2SBarry Smith MatScalar *ba; 2530f4c0e9e4SHong Zhang MPI_Status stat; 253124d5174aSHong Zhang 253224d5174aSHong Zhang PetscFunctionBegin; 25335f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25349566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25359566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2536f4c0e9e4SHong Zhang 25379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2539f4c0e9e4SHong Zhang 2540d0f46423SBarry Smith bs = A->rmap->bs; 2541f4c0e9e4SHong Zhang mbs = a->mbs; 2542f4c0e9e4SHong Zhang Mbs = a->Mbs; 2543f4c0e9e4SHong Zhang ba = b->a; 2544f4c0e9e4SHong Zhang bi = b->i; 2545f4c0e9e4SHong Zhang bj = b->j; 2546f4c0e9e4SHong Zhang 2547f4c0e9e4SHong Zhang /* find ownerships */ 2548d0f46423SBarry Smith rowners_bs = A->rmap->range; 2549f4c0e9e4SHong Zhang 2550f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25519566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2552f4c0e9e4SHong Zhang 2553f4c0e9e4SHong Zhang /* row_max for B */ 2554b8475685SHong Zhang if (rank != size - 1) { 2555f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 25569371c9d4SSatish Balay ncols = bi[1] - bi[0]; 25579371c9d4SSatish Balay bi++; 2558f4c0e9e4SHong Zhang brow = bs * i; 2559f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2560f4c0e9e4SHong Zhang bcol = bs * (*bj); 2561f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2562ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 256304d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2564f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 25659371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 25669371c9d4SSatish Balay ba++; 2567ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2568ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2569f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2570f4c0e9e4SHong Zhang } 2571f4c0e9e4SHong Zhang } 2572f4c0e9e4SHong Zhang bj++; 2573f4c0e9e4SHong Zhang } 2574f4c0e9e4SHong Zhang } 2575f4c0e9e4SHong Zhang 2576f4c0e9e4SHong Zhang /* send values to its owners */ 25776497c311SBarry Smith for (PetscMPIInt dest = rank + 1; dest < size; dest++) { 2578f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2579ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 25806497c311SBarry Smith PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2581ca54ac64SHong Zhang } 2582f4c0e9e4SHong Zhang } 2583f4c0e9e4SHong Zhang 2584f4c0e9e4SHong Zhang /* receive values */ 2585ca54ac64SHong Zhang if (rank) { 2586f4c0e9e4SHong Zhang rvalues = work; 2587ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2588f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 25896497c311SBarry Smith PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2590f4c0e9e4SHong Zhang /* process values */ 2591f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2592ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2593f4c0e9e4SHong Zhang } 2594f4c0e9e4SHong Zhang } 2595ca54ac64SHong Zhang } 2596f4c0e9e4SHong Zhang 25979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 25989566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 25993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260024d5174aSHong Zhang } 26012798e883SHong Zhang 2602789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2603d71ae5a4SJacob Faibussowitsch { 26042798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2605d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26063649974fSBarry Smith PetscScalar *x, *ptr, *from; 2607ffe4fb16SHong Zhang Vec bb1; 26083649974fSBarry Smith const PetscScalar *b; 2609ffe4fb16SHong Zhang 2610ffe4fb16SHong Zhang PetscFunctionBegin; 26115f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26125f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2613ffe4fb16SHong Zhang 2614a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26159566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2617a2b30743SBarry Smith } 2618a2b30743SBarry Smith 2619ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2620ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26219566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2622ffe4fb16SHong Zhang its--; 2623ffe4fb16SHong Zhang } 2624ffe4fb16SHong Zhang 26259566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2626ffe4fb16SHong Zhang while (its--) { 2627ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26289566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2629ffe4fb16SHong Zhang 2630ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26319566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26329566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26339566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26349566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2635ffe4fb16SHong Zhang 26369566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2637ffe4fb16SHong Zhang 2638ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26399566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26409566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2643ffe4fb16SHong Zhang 2644ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2645629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2646629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2647ffe4fb16SHong Zhang 26489566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2652ffe4fb16SHong Zhang 2653ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2655ffe4fb16SHong Zhang 2656ffe4fb16SHong Zhang /* local diagonal sweep */ 26579566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2658ffe4fb16SHong Zhang } 26599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2660fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2662fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26639566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2664fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2665fa22f6d0SBarry Smith Vec xx1; 2666ace3abfcSBarry Smith PetscBool hasop; 266720f1ed55SBarry Smith const PetscScalar *diag; 2668887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 266920f1ed55SBarry Smith PetscInt i, n; 2670fa22f6d0SBarry Smith 2671fa22f6d0SBarry Smith if (!mat->xx1) { 26729566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 26739566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2674fa22f6d0SBarry Smith } 2675fa22f6d0SBarry Smith xx1 = mat->xx1; 2676fa22f6d0SBarry Smith bb1 = mat->bb1; 2677fa22f6d0SBarry Smith 26789566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2679fa22f6d0SBarry Smith 2680fa22f6d0SBarry Smith if (!mat->diag) { 2681effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26829566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 26839566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2684fa22f6d0SBarry Smith } 26859566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2686fa22f6d0SBarry Smith 2687fa22f6d0SBarry Smith if (hasop) { 26889566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 26899566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 269020f1ed55SBarry Smith } else { 269120f1ed55SBarry Smith /* 269220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 26939566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 26949566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 269520f1ed55SBarry Smith */ 26969566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 26979566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 26989566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26999566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27009566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2701887ee2caSBarry Smith if (omega == 1.0) { 270226fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27039566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2704887ee2caSBarry Smith } else { 270526fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27069566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2707887ee2caSBarry Smith } 27089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27109566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 271220f1ed55SBarry Smith } 2713fa22f6d0SBarry Smith 2714fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2715629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2716629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27179566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27189566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27199566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27229566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27239566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27249566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27259566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2726fa22f6d0SBarry Smith 2727fa22f6d0SBarry Smith /* local sweep */ 27289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27299566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2730f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2732ffe4fb16SHong Zhang } 2733ffe4fb16SHong Zhang 2734dfb205c3SBarry Smith /*@ 2735d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2736dfb205c3SBarry Smith 2737d083f849SBarry Smith Collective 2738dfb205c3SBarry Smith 2739dfb205c3SBarry Smith Input Parameters: 2740dfb205c3SBarry Smith + comm - MPI communicator 2741dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 274211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2743dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2744d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 27452ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27462ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27472ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2748483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2749dfb205c3SBarry Smith . j - column indices 2750dfb205c3SBarry Smith - a - matrix values 2751dfb205c3SBarry Smith 2752dfb205c3SBarry Smith Output Parameter: 2753dfb205c3SBarry Smith . mat - the matrix 2754dfb205c3SBarry Smith 2755dfb205c3SBarry Smith Level: intermediate 2756dfb205c3SBarry Smith 2757dfb205c3SBarry Smith Notes: 27582ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 27592ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 27602ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2761dfb205c3SBarry Smith 27622ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2763dfb205c3SBarry Smith 27641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2765d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2766dfb205c3SBarry Smith @*/ 2767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2768d71ae5a4SJacob Faibussowitsch { 2769dfb205c3SBarry Smith PetscFunctionBegin; 27705f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 27715f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 27729566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 27739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 27749566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 27759566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 27763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2777dfb205c3SBarry Smith } 2778dfb205c3SBarry Smith 27795d83a8b1SBarry Smith /*@ 278011a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2781dfb205c3SBarry Smith 2782d083f849SBarry Smith Collective 2783dfb205c3SBarry Smith 2784dfb205c3SBarry Smith Input Parameters: 27851c4f3114SJed Brown + B - the matrix 2786dfb205c3SBarry Smith . bs - the block size 2787d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2788d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2789d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2790dfb205c3SBarry Smith 2791664954b6SBarry Smith Level: advanced 2792664954b6SBarry Smith 2793664954b6SBarry Smith Notes: 2794d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2795d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2796d8a51d2aSBarry Smith called this routine. 2797d8a51d2aSBarry Smith 27980cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 27990cd7f59aSBarry Smith and usually the numerical values as well 28000cd7f59aSBarry Smith 2801d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2802dfb205c3SBarry Smith 2803d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2804d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2805dfb205c3SBarry Smith @*/ 2806d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2807d71ae5a4SJacob Faibussowitsch { 2808dfb205c3SBarry Smith PetscFunctionBegin; 2809cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2811dfb205c3SBarry Smith } 2812dfb205c3SBarry Smith 2813d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2814d71ae5a4SJacob Faibussowitsch { 281510c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 281610c56fdeSHong Zhang PetscInt *indx; 281710c56fdeSHong Zhang PetscScalar *values; 2818dfb205c3SBarry Smith 28194dcd73b1SHong Zhang PetscFunctionBegin; 28209566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 282110c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 282210c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2823de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 282410c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2825de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28264dcd73b1SHong Zhang 28279566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28289371c9d4SSatish Balay mbs = m / bs; 28299371c9d4SSatish Balay Nbs = N / cbs; 283048a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2831da91a574SPierre Jolivet nbs = n / cbs; 28324dcd73b1SHong Zhang 28339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2834d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2835de25e9cbSPierre Jolivet 28369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2838de25e9cbSPierre Jolivet if (rank == size - 1) { 2839de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28405f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2841de25e9cbSPierre Jolivet } 2842de25e9cbSPierre Jolivet 2843d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28449566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 284510c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28469566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28474dcd73b1SHong Zhang nnz = nnz / bs; 28484dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 28499566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 28509566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28514dcd73b1SHong Zhang } 28529566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28539566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28544dcd73b1SHong Zhang 28559566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 28569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 28579566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 28589566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 28599566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 28609566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2861d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 28624dcd73b1SHong Zhang } 28634dcd73b1SHong Zhang 286410c56fdeSHong Zhang /* numeric phase */ 28659566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28669566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 28674dcd73b1SHong Zhang 28689566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 28694dcd73b1SHong Zhang for (i = 0; i < m; i++) { 28709566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28714dcd73b1SHong Zhang Ii = i + rstart; 28729566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 28739566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28744dcd73b1SHong Zhang } 28759566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28769566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 28779566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 28783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28794dcd73b1SHong Zhang } 2880