173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 840781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10f15d580aSBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 11e249d750SSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 12f15d580aSBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode); 13f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 14e249d750SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 1587828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1687828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1887828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 1987828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 21c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 31f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 32f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 33f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 34f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 35f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50a30f8f8cSSatish Balay int ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65a30f8f8cSSatish Balay int ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 104a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 107a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 110a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 112a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 118a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 120a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 136b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 177a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 180a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 183a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 186a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 188a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 194a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 196a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 212b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 234f15d580aSBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237a30f8f8cSSatish Balay int ierr,i,N = m*n; 238a30f8f8cSSatish Balay MatScalar *vsingle; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay if (N > b->setvalueslen) { 242a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 244a30f8f8cSSatish Balay b->setvalueslen = N; 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 247a30f8f8cSSatish Balay 248a30f8f8cSSatish Balay for (i=0; i<N; i++) { 249a30f8f8cSSatish Balay vsingle[i] = v[i]; 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 252a30f8f8cSSatish Balay PetscFunctionReturn(0); 253a30f8f8cSSatish Balay } 254a30f8f8cSSatish Balay 2554a2ae208SSatish Balay #undef __FUNCT__ 2564a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 257f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 258a30f8f8cSSatish Balay { 259a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 260a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 261a30f8f8cSSatish Balay MatScalar *vsingle; 262a30f8f8cSSatish Balay 263a30f8f8cSSatish Balay PetscFunctionBegin; 264a30f8f8cSSatish Balay if (N > b->setvalueslen) { 265a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26682502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 267a30f8f8cSSatish Balay b->setvalueslen = N; 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 270a30f8f8cSSatish Balay for (i=0; i<N; i++) { 271a30f8f8cSSatish Balay vsingle[i] = v[i]; 272a30f8f8cSSatish Balay } 273a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 274a30f8f8cSSatish Balay PetscFunctionReturn(0); 275a30f8f8cSSatish Balay } 276a30f8f8cSSatish Balay 2774a2ae208SSatish Balay #undef __FUNCT__ 2784a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 279f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 280a30f8f8cSSatish Balay { 281a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 282a30f8f8cSSatish Balay int ierr,i,N = m*n; 283a30f8f8cSSatish Balay MatScalar *vsingle; 284a30f8f8cSSatish Balay 285a30f8f8cSSatish Balay PetscFunctionBegin; 28629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 2874d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay 2904a2ae208SSatish Balay #undef __FUNCT__ 2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 292f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 293a30f8f8cSSatish Balay { 294a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 295a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 296a30f8f8cSSatish Balay MatScalar *vsingle; 297a30f8f8cSSatish Balay 298a30f8f8cSSatish Balay PetscFunctionBegin; 29929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3004d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 301a30f8f8cSSatish Balay } 302a30f8f8cSSatish Balay #endif 303a30f8f8cSSatish Balay 304a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 305a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 306a30f8f8cSSatish Balay */ 3074a2ae208SSatish Balay #undef __FUNCT__ 308e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 309f15d580aSBarry Smith int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 310a30f8f8cSSatish Balay { 311a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 312a30f8f8cSSatish Balay MatScalar value; 313b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 314a30f8f8cSSatish Balay int ierr,i,j,row,col; 315b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 316a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 317a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 318a30f8f8cSSatish Balay 319a30f8f8cSSatish Balay /* Some Variables required in the macro */ 320a30f8f8cSSatish Balay Mat A = baij->A; 321a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 322a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 323a30f8f8cSSatish Balay MatScalar *aa=a->a; 324a30f8f8cSSatish Balay 325a30f8f8cSSatish Balay Mat B = baij->B; 326a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 327a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 328a30f8f8cSSatish Balay MatScalar *ba=b->a; 329a30f8f8cSSatish Balay 330a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 331a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 332a30f8f8cSSatish Balay MatScalar *ap,*bap; 333a30f8f8cSSatish Balay 334a30f8f8cSSatish Balay /* for stash */ 335f65c83cfSHong Zhang int n_loc, *in_loc=0; 336f65c83cfSHong Zhang MatScalar *v_loc=0; 337a30f8f8cSSatish Balay 338a30f8f8cSSatish Balay PetscFunctionBegin; 339a30f8f8cSSatish Balay 340a30f8f8cSSatish Balay if(!baij->donotstash){ 34182502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 34282502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 343a30f8f8cSSatish Balay } 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay for (i=0; i<m; i++) { 346a30f8f8cSSatish Balay if (im[i] < 0) continue; 347a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 348590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 349a30f8f8cSSatish Balay #endif 350a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 351a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 352a30f8f8cSSatish Balay for (j=0; j<n; j++) { 353f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 354a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 355a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 356a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 357a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 358a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 359a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 360a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 361a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 363590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);} 364a30f8f8cSSatish Balay #endif 365a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 366a30f8f8cSSatish Balay if (mat->was_assembled) { 367a30f8f8cSSatish Balay if (!baij->colmap) { 368653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 369a30f8f8cSSatish Balay } 370a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 371a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37271730473SSatish Balay col = col - 1; 373a30f8f8cSSatish Balay #else 37471730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 375a30f8f8cSSatish Balay #endif 376a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 377a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 378a30f8f8cSSatish Balay col = in[j]; 379a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 380a30f8f8cSSatish Balay B = baij->B; 381a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 382a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 383a30f8f8cSSatish Balay ba=b->a; 38471730473SSatish Balay } else col += in[j]%bs; 385a30f8f8cSSatish Balay } else col = in[j]; 386a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 387a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 388a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 389a30f8f8cSSatish Balay } 390a30f8f8cSSatish Balay } 391a30f8f8cSSatish Balay } else { /* off processor entry */ 392a30f8f8cSSatish Balay if (!baij->donotstash) { 393a30f8f8cSSatish Balay n_loc = 0; 394a30f8f8cSSatish Balay for (j=0; j<n; j++){ 395f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 396a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 397a30f8f8cSSatish Balay if (roworiented) { 398a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 399a30f8f8cSSatish Balay } else { 400a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay n_loc++; 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay } 408a30f8f8cSSatish Balay 409a30f8f8cSSatish Balay if(!baij->donotstash){ 410a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 411a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 412a30f8f8cSSatish Balay } 413a30f8f8cSSatish Balay PetscFunctionReturn(0); 414a30f8f8cSSatish Balay } 415a30f8f8cSSatish Balay 4164a2ae208SSatish Balay #undef __FUNCT__ 417e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 418f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 419a30f8f8cSSatish Balay { 4200880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 421f15d580aSBarry Smith const MatScalar *value; 422f15d580aSBarry Smith MatScalar *barray=baij->barray; 4230880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 4240880e062SHong Zhang int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 4250880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4260880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4270880e062SHong Zhang 428a30f8f8cSSatish Balay PetscFunctionBegin; 4290880e062SHong Zhang if(!barray) { 4300880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4310880e062SHong Zhang baij->barray = barray; 4320880e062SHong Zhang } 4330880e062SHong Zhang 4340880e062SHong Zhang if (roworiented) { 4350880e062SHong Zhang stepval = (n-1)*bs; 4360880e062SHong Zhang } else { 4370880e062SHong Zhang stepval = (m-1)*bs; 4380880e062SHong Zhang } 4390880e062SHong Zhang for (i=0; i<m; i++) { 4400880e062SHong Zhang if (im[i] < 0) continue; 4410880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 442590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 4430880e062SHong Zhang #endif 4440880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4450880e062SHong Zhang row = im[i] - rstart; 4460880e062SHong Zhang for (j=0; j<n; j++) { 4470880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4480880e062SHong Zhang if ((roworiented) && (n == 1)) { 449f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4500880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 451f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4520880e062SHong Zhang } else { /* Here a copy is required */ 4530880e062SHong Zhang if (roworiented) { 4540880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4550880e062SHong Zhang } else { 4560880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4570880e062SHong Zhang } 4580880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4590880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4600880e062SHong Zhang *barray++ = *value++; 4610880e062SHong Zhang } 4620880e062SHong Zhang } 4630880e062SHong Zhang barray -=bs2; 4640880e062SHong Zhang } 4650880e062SHong Zhang 4660880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4670880e062SHong Zhang col = in[j] - cstart; 4680880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4690880e062SHong Zhang } 4700880e062SHong Zhang else if (in[j] < 0) continue; 4710880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 472590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 4730880e062SHong Zhang #endif 4740880e062SHong Zhang else { 4750880e062SHong Zhang if (mat->was_assembled) { 4760880e062SHong Zhang if (!baij->colmap) { 477653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4780880e062SHong Zhang } 4790880e062SHong Zhang 4800880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4810880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4820880e062SHong Zhang { int data; 4830880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4840880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4850880e062SHong Zhang } 4860880e062SHong Zhang #else 4870880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4880880e062SHong Zhang #endif 4890880e062SHong Zhang #endif 4900880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4910880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4920880e062SHong Zhang col = (col - 1)/bs; 4930880e062SHong Zhang #else 4940880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4950880e062SHong Zhang #endif 4960880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4970880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4980880e062SHong Zhang col = in[j]; 4990880e062SHong Zhang } 5000880e062SHong Zhang } 5010880e062SHong Zhang else col = in[j]; 502e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5030880e062SHong Zhang } 5040880e062SHong Zhang } 5050880e062SHong Zhang } else { 5060880e062SHong Zhang if (!baij->donotstash) { 5070880e062SHong Zhang if (roworiented) { 5080880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5090880e062SHong Zhang } else { 5100880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5110880e062SHong Zhang } 5120880e062SHong Zhang } 5130880e062SHong Zhang } 5140880e062SHong Zhang } 5150880e062SHong Zhang PetscFunctionReturn(0); 516a30f8f8cSSatish Balay } 517a30f8f8cSSatish Balay 518a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 519a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 520a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 521a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5224a2ae208SSatish Balay #undef __FUNCT__ 5234a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 524f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 525a30f8f8cSSatish Balay { 526a30f8f8cSSatish Balay PetscFunctionBegin; 52729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 52896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 529a30f8f8cSSatish Balay } 530a30f8f8cSSatish Balay 5314a2ae208SSatish Balay #undef __FUNCT__ 5324a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 533f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 534a30f8f8cSSatish Balay { 535a30f8f8cSSatish Balay PetscFunctionBegin; 53629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 53796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay 5404a2ae208SSatish Balay #undef __FUNCT__ 5414a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 542f15d580aSBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 543a30f8f8cSSatish Balay { 544f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 545a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 546a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 547a30f8f8cSSatish Balay 548a30f8f8cSSatish Balay PetscFunctionBegin; 549a30f8f8cSSatish Balay for (i=0; i<m; i++) { 550590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 551590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 552a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 553a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 554a30f8f8cSSatish Balay for (j=0; j<n; j++) { 555590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]); 556590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 557a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 558a30f8f8cSSatish Balay col = idxn[j] - bscstart; 559c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 560a30f8f8cSSatish Balay } else { 561a30f8f8cSSatish Balay if (!baij->colmap) { 562653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 565a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 566a30f8f8cSSatish Balay data --; 567a30f8f8cSSatish Balay #else 568a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 569a30f8f8cSSatish Balay #endif 570a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 571a30f8f8cSSatish Balay else { 572a30f8f8cSSatish Balay col = data + idxn[j]%bs; 573e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 574a30f8f8cSSatish Balay } 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay } 577a30f8f8cSSatish Balay } else { 57829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay } 581a30f8f8cSSatish Balay PetscFunctionReturn(0); 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay 5844a2ae208SSatish Balay #undef __FUNCT__ 5854a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 586a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 587a30f8f8cSSatish Balay { 588a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 589bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 590bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 591a30f8f8cSSatish Balay int ierr; 592a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 593a30f8f8cSSatish Balay 594a30f8f8cSSatish Balay PetscFunctionBegin; 595a30f8f8cSSatish Balay if (baij->size == 1) { 596a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 597a30f8f8cSSatish Balay } else { 598a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 599f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 600a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 601a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 602a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 604a30f8f8cSSatish Balay /* 60556faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 60656faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 607a30f8f8cSSatish Balay */ 608d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 609a30f8f8cSSatish Balay /* 61056faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 61156faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 612a30f8f8cSSatish Balay 613a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 614a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 615a30f8f8cSSatish Balay } else { 61629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 617a30f8f8cSSatish Balay } 618a30f8f8cSSatish Balay } 619a30f8f8cSSatish Balay PetscFunctionReturn(0); 620a30f8f8cSSatish Balay } 621a30f8f8cSSatish Balay 622a30f8f8cSSatish Balay /* 623a30f8f8cSSatish Balay Creates the hash table, and sets the table 624a30f8f8cSSatish Balay This table is created only once. 625a30f8f8cSSatish Balay If new entried need to be added to the matrix 626a30f8f8cSSatish Balay then the hash table has to be destroyed and 627a30f8f8cSSatish Balay recreated. 628a30f8f8cSSatish Balay */ 6294a2ae208SSatish Balay #undef __FUNCT__ 6304a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 631a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 632a30f8f8cSSatish Balay { 633a30f8f8cSSatish Balay PetscFunctionBegin; 63429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 63596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 636a30f8f8cSSatish Balay } 637a30f8f8cSSatish Balay 6384a2ae208SSatish Balay #undef __FUNCT__ 6394a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 640a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 641a30f8f8cSSatish Balay { 642a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 643a30f8f8cSSatish Balay int ierr,nstash,reallocs; 644a30f8f8cSSatish Balay InsertMode addv; 645a30f8f8cSSatish Balay 646a30f8f8cSSatish Balay PetscFunctionBegin; 647a30f8f8cSSatish Balay if (baij->donotstash) { 648a30f8f8cSSatish Balay PetscFunctionReturn(0); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 652a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 653a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 65429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 659a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 660a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 661b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 662a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 663b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 664a30f8f8cSSatish Balay PetscFunctionReturn(0); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay 6674a2ae208SSatish Balay #undef __FUNCT__ 6684a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 669a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 670a30f8f8cSSatish Balay { 671a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 672a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 673a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 674a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 675a30f8f8cSSatish Balay int *row,*col,other_disassembled; 676a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 677a30f8f8cSSatish Balay MatScalar *val; 678a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 679a30f8f8cSSatish Balay 680a30f8f8cSSatish Balay PetscFunctionBegin; 681a30f8f8cSSatish Balay 682a30f8f8cSSatish Balay if (!baij->donotstash) { 683a30f8f8cSSatish Balay while (1) { 684a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 685a30f8f8cSSatish Balay /* 68656faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 68756faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 688a30f8f8cSSatish Balay */ 689a30f8f8cSSatish Balay if (!flg) break; 690a30f8f8cSSatish Balay 691a30f8f8cSSatish Balay for (i=0; i<n;) { 692a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 693a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 694a30f8f8cSSatish Balay if (j < n) ncols = j-i; 695a30f8f8cSSatish Balay else ncols = n-i; 696a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 697a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 698a30f8f8cSSatish Balay i = j; 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 702a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 703a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 704a30f8f8cSSatish Balay restore the original flags */ 705a30f8f8cSSatish Balay r1 = baij->roworiented; 706a30f8f8cSSatish Balay r2 = a->roworiented; 707a30f8f8cSSatish Balay r3 = b->roworiented; 708a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 709a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 710a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 711a30f8f8cSSatish Balay while (1) { 712a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 713a30f8f8cSSatish Balay if (!flg) break; 714a30f8f8cSSatish Balay 715a30f8f8cSSatish Balay for (i=0; i<n;) { 716a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 717a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 718a30f8f8cSSatish Balay if (j < n) ncols = j-i; 719a30f8f8cSSatish Balay else ncols = n-i; 720a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 721a30f8f8cSSatish Balay i = j; 722a30f8f8cSSatish Balay } 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 725a30f8f8cSSatish Balay baij->roworiented = r1; 726a30f8f8cSSatish Balay a->roworiented = r2; 727a30f8f8cSSatish Balay b->roworiented = r3; 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 731a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 732a30f8f8cSSatish Balay 733a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 734a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 735a30f8f8cSSatish Balay /* 736a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 737a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 738a30f8f8cSSatish Balay */ 739a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 740a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 741a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 742c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay 746a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 74740781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 748a30f8f8cSSatish Balay } 749a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 750a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 751a30f8f8cSSatish Balay 752a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 753a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 754f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 755a30f8f8cSSatish Balay baij->ht_total_ct = 0; 756a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay #endif 759a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 760c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 761a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 762a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 763a30f8f8cSSatish Balay } 764a30f8f8cSSatish Balay 765a30f8f8cSSatish Balay if (baij->rowvalues) { 766a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 767a30f8f8cSSatish Balay baij->rowvalues = 0; 768a30f8f8cSSatish Balay } 7695222a1afSHong Zhang 770a30f8f8cSSatish Balay PetscFunctionReturn(0); 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay 7734a2ae208SSatish Balay #undef __FUNCT__ 7744a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 775b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 776a30f8f8cSSatish Balay { 777a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 778fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 779a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 780b0a32e0cSBarry Smith PetscViewer sviewer; 781f3ef73ceSBarry Smith PetscViewerFormat format; 782a30f8f8cSSatish Balay 783a30f8f8cSSatish Balay PetscFunctionBegin; 784b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 785fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 786a30f8f8cSSatish Balay if (isascii) { 787b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 788456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 789a30f8f8cSSatish Balay MatInfo info; 790a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 791a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 792b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 793b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 794a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 795a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 796b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 797a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 798b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 799b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 800a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 801a30f8f8cSSatish Balay PetscFunctionReturn(0); 802fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 803b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 804a30f8f8cSSatish Balay PetscFunctionReturn(0); 805a30f8f8cSSatish Balay } 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay 808a30f8f8cSSatish Balay if (isdraw) { 809b0a32e0cSBarry Smith PetscDraw draw; 810a30f8f8cSSatish Balay PetscTruth isnull; 811b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 812b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 813a30f8f8cSSatish Balay } 814a30f8f8cSSatish Balay 815a30f8f8cSSatish Balay if (size == 1) { 816e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 817a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 818a30f8f8cSSatish Balay } else { 819a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 820a30f8f8cSSatish Balay Mat A; 82165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 82265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 823b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 824a30f8f8cSSatish Balay MatScalar *a; 825a30f8f8cSSatish Balay 826a30f8f8cSSatish Balay if (!rank) { 827bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 828a30f8f8cSSatish Balay } else { 829f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 830a30f8f8cSSatish Balay } 831b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 832a30f8f8cSSatish Balay 833a30f8f8cSSatish Balay /* copy over the A part */ 83465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 835a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 83682502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 837a30f8f8cSSatish Balay 838a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 839a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 840a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 841a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 842a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 843a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 844a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 845a30f8f8cSSatish Balay col++; a += bs; 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay } 848a30f8f8cSSatish Balay } 849a30f8f8cSSatish Balay /* copy over the B part */ 85065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 85165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 852a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 853a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 854a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 855a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 856a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 857a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 858a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 859a30f8f8cSSatish Balay col++; a += bs; 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 864a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 865a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 866a30f8f8cSSatish Balay /* 867a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 868b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 869a30f8f8cSSatish Balay */ 870b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 87165d70643SHong Zhang if (!rank) { 872e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 873a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 874a30f8f8cSSatish Balay } 875b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 876a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 877a30f8f8cSSatish Balay } 878a30f8f8cSSatish Balay PetscFunctionReturn(0); 879a30f8f8cSSatish Balay } 880a30f8f8cSSatish Balay 8814a2ae208SSatish Balay #undef __FUNCT__ 8824a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 883b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 884a30f8f8cSSatish Balay { 885a30f8f8cSSatish Balay int ierr; 886a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 887a30f8f8cSSatish Balay 888a30f8f8cSSatish Balay PetscFunctionBegin; 889b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 890fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 891b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 892fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 893a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 894a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 895a30f8f8cSSatish Balay } else { 89629bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 897a30f8f8cSSatish Balay } 898a30f8f8cSSatish Balay PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay 9014a2ae208SSatish Balay #undef __FUNCT__ 9024a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 903a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 904a30f8f8cSSatish Balay { 905a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 906a30f8f8cSSatish Balay int ierr; 907a30f8f8cSSatish Balay 908a30f8f8cSSatish Balay PetscFunctionBegin; 909a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 910b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 911a30f8f8cSSatish Balay #endif 912a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 913a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 914a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 915a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 916a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 917a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 918a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 919a30f8f8cSSatish Balay #else 920a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 921a30f8f8cSSatish Balay #endif 922a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 923a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 924a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 92540781036SHong Zhang if (baij->slvec0) { 92640781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 92740781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 92840781036SHong Zhang } 92940781036SHong Zhang if (baij->slvec1) { 93040781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 93140781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 93240781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 93340781036SHong Zhang } 93440781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 935a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 937a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 938a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 939a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 940a30f8f8cSSatish Balay #endif 941a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 942a30f8f8cSSatish Balay PetscFunctionReturn(0); 943a30f8f8cSSatish Balay } 944a30f8f8cSSatish Balay 9454a2ae208SSatish Balay #undef __FUNCT__ 946a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 947a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 948a9d4b620SHong Zhang { 949a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 9504024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 951a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 952a9d4b620SHong Zhang 953a9d4b620SHong Zhang PetscFunctionBegin; 954a9d4b620SHong Zhang /* 95556faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," _1comm is called ...\n"); 95656faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 957a9d4b620SHong Zhang */ 958a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 959a9d4b620SHong Zhang if (nt != A->n) { 960a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 961a9d4b620SHong Zhang } 962a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 963a9d4b620SHong Zhang if (nt != A->m) { 964a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 965a9d4b620SHong Zhang } 966a9d4b620SHong Zhang 967a9d4b620SHong Zhang /* diagonal part */ 968a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 969a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 970a9d4b620SHong Zhang 971a9d4b620SHong Zhang /* subdiagonal part */ 972a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 973a9d4b620SHong Zhang 974a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 975*b1d4fb26SBarry Smith ierr = VecGetArrayFast(a->slvec0,&from);CHKERRQ(ierr); 976*b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 977a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 978*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(a->slvec0,&from);CHKERRQ(ierr); 979a9d4b620SHong Zhang 980a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 981*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 982a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 983a9d4b620SHong Zhang 984a9d4b620SHong Zhang /* supperdiagonal part */ 985a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 986a9d4b620SHong Zhang 987a9d4b620SHong Zhang PetscFunctionReturn(0); 988a9d4b620SHong Zhang } 989a9d4b620SHong Zhang 990a9d4b620SHong Zhang #undef __FUNCT__ 99140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 99240781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 993a30f8f8cSSatish Balay { 994a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 995a30f8f8cSSatish Balay int ierr,nt; 996a30f8f8cSSatish Balay 997a30f8f8cSSatish Balay PetscFunctionBegin; 998a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 999b5df2d14SHong Zhang if (nt != A->n) { 100029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1001a30f8f8cSSatish Balay } 1002a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1003b5df2d14SHong Zhang if (nt != A->m) { 100429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1005a30f8f8cSSatish Balay } 100665d70643SHong Zhang 1007b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1008b941877fSHong Zhang /* do diagonal part */ 1009b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1010b941877fSHong Zhang /* do supperdiagonal part */ 1011b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1012b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1013b941877fSHong Zhang /* do subdiagonal part */ 1014b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1015b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1016b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 101765d70643SHong Zhang 1018a30f8f8cSSatish Balay PetscFunctionReturn(0); 1019a30f8f8cSSatish Balay } 1020a30f8f8cSSatish Balay 10214a2ae208SSatish Balay #undef __FUNCT__ 10224a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1023a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1024a30f8f8cSSatish Balay { 1025de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1026a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 1027a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1028a9d4b620SHong Zhang 1029a9d4b620SHong Zhang PetscFunctionBegin; 1030a9d4b620SHong Zhang /* 103156faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 103256faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1033a9d4b620SHong Zhang */ 1034a9d4b620SHong Zhang /* diagonal part */ 1035a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1036a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1037a9d4b620SHong Zhang 1038a9d4b620SHong Zhang /* subdiagonal part */ 1039a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1040a9d4b620SHong Zhang 1041a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 1042*b1d4fb26SBarry Smith ierr = VecGetArrayFast(a->slvec0,&from);CHKERRQ(ierr); 1043*b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 1044a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1045*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(a->slvec0,&from);CHKERRQ(ierr); 1046a9d4b620SHong Zhang 1047a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1048*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 1049a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1050a9d4b620SHong Zhang 1051a9d4b620SHong Zhang /* supperdiagonal part */ 1052a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1053a9d4b620SHong Zhang 1054a9d4b620SHong Zhang PetscFunctionReturn(0); 1055a9d4b620SHong Zhang } 1056a9d4b620SHong Zhang 1057a9d4b620SHong Zhang #undef __FUNCT__ 1058a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1059a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1060a9d4b620SHong Zhang { 1061a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1062aa482183SHong Zhang int ierr; 1063a30f8f8cSSatish Balay 1064a30f8f8cSSatish Balay PetscFunctionBegin; 1065b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1066b941877fSHong Zhang /* do diagonal part */ 1067b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1068b941877fSHong Zhang /* do supperdiagonal part */ 1069b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1070de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1071de8b6608SHong Zhang 1072b941877fSHong Zhang /* do subdiagonal part */ 1073a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1074a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1075a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1076aa482183SHong Zhang 1077a30f8f8cSSatish Balay PetscFunctionReturn(0); 1078a30f8f8cSSatish Balay } 1079a30f8f8cSSatish Balay 10804a2ae208SSatish Balay #undef __FUNCT__ 10814a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1082a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1083a30f8f8cSSatish Balay { 10845a7c0312SHong Zhang int ierr; 10855a7c0312SHong Zhang 1086a30f8f8cSSatish Balay PetscFunctionBegin; 10875a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10885a7c0312SHong Zhang PetscFunctionReturn(0); 1089a30f8f8cSSatish Balay } 1090a30f8f8cSSatish Balay 10914a2ae208SSatish Balay #undef __FUNCT__ 10924a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1093a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1094a30f8f8cSSatish Balay { 10955a7c0312SHong Zhang int ierr; 10965a7c0312SHong Zhang 1097a30f8f8cSSatish Balay PetscFunctionBegin; 10985a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10995a7c0312SHong Zhang PetscFunctionReturn(0); 1100a30f8f8cSSatish Balay } 1101a30f8f8cSSatish Balay 1102a30f8f8cSSatish Balay /* 1103a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1104a30f8f8cSSatish Balay diagonal block 1105a30f8f8cSSatish Balay */ 11064a2ae208SSatish Balay #undef __FUNCT__ 11074a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1108a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1109a30f8f8cSSatish Balay { 1110a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1111a30f8f8cSSatish Balay int ierr; 1112a30f8f8cSSatish Balay 1113a30f8f8cSSatish Balay PetscFunctionBegin; 111429bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1115a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1116a30f8f8cSSatish Balay PetscFunctionReturn(0); 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay 11194a2ae208SSatish Balay #undef __FUNCT__ 11204a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1121268466fbSBarry Smith int MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1122a30f8f8cSSatish Balay { 1123a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1124a30f8f8cSSatish Balay int ierr; 1125a30f8f8cSSatish Balay 1126a30f8f8cSSatish Balay PetscFunctionBegin; 1127a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1128a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1129a30f8f8cSSatish Balay PetscFunctionReturn(0); 1130a30f8f8cSSatish Balay } 1131a30f8f8cSSatish Balay 11324a2ae208SSatish Balay #undef __FUNCT__ 11334a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 113487828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1135a30f8f8cSSatish Balay { 1136a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 113787828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1138a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1139a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1140a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1141a30f8f8cSSatish Balay 1142a30f8f8cSSatish Balay PetscFunctionBegin; 114329bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1144a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1145a30f8f8cSSatish Balay 1146a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1147a30f8f8cSSatish Balay /* 1148a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1149a30f8f8cSSatish Balay */ 1150a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1151a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1152a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1153a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1154a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1155a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1156a30f8f8cSSatish Balay } 115787828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1158a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1159a30f8f8cSSatish Balay } 1160a30f8f8cSSatish Balay 116129bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1162a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1163a30f8f8cSSatish Balay 1164a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1165a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1166a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1167a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1168a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1169a30f8f8cSSatish Balay nztot = nzA + nzB; 1170a30f8f8cSSatish Balay 1171a30f8f8cSSatish Balay cmap = mat->garray; 1172a30f8f8cSSatish Balay if (v || idx) { 1173a30f8f8cSSatish Balay if (nztot) { 1174a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1175a30f8f8cSSatish Balay int imark = -1; 1176a30f8f8cSSatish Balay if (v) { 1177a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1178a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1179a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1180a30f8f8cSSatish Balay else break; 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay imark = i; 1183a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1184a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1185a30f8f8cSSatish Balay } 1186a30f8f8cSSatish Balay if (idx) { 1187a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1188a30f8f8cSSatish Balay if (imark > -1) { 1189a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1190a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1191a30f8f8cSSatish Balay } 1192a30f8f8cSSatish Balay } else { 1193a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1194a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1195a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1196a30f8f8cSSatish Balay else break; 1197a30f8f8cSSatish Balay } 1198a30f8f8cSSatish Balay imark = i; 1199a30f8f8cSSatish Balay } 1200a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1201a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1202a30f8f8cSSatish Balay } 1203a30f8f8cSSatish Balay } else { 1204a30f8f8cSSatish Balay if (idx) *idx = 0; 1205a30f8f8cSSatish Balay if (v) *v = 0; 1206a30f8f8cSSatish Balay } 1207a30f8f8cSSatish Balay } 1208a30f8f8cSSatish Balay *nz = nztot; 1209a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1210a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay PetscFunctionReturn(0); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay 12144a2ae208SSatish Balay #undef __FUNCT__ 12154a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 121687828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1217a30f8f8cSSatish Balay { 1218a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1219a30f8f8cSSatish Balay 1220a30f8f8cSSatish Balay PetscFunctionBegin; 1221a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 122229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1223a30f8f8cSSatish Balay } 1224a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1225a30f8f8cSSatish Balay PetscFunctionReturn(0); 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay 12284a2ae208SSatish Balay #undef __FUNCT__ 12294a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1230a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1231a30f8f8cSSatish Balay { 1232a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1233a30f8f8cSSatish Balay 1234a30f8f8cSSatish Balay PetscFunctionBegin; 1235a30f8f8cSSatish Balay *bs = baij->bs; 1236a30f8f8cSSatish Balay PetscFunctionReturn(0); 1237a30f8f8cSSatish Balay } 1238a30f8f8cSSatish Balay 12394a2ae208SSatish Balay #undef __FUNCT__ 12404a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1241a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1242a30f8f8cSSatish Balay { 1243a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1244a30f8f8cSSatish Balay int ierr; 1245a30f8f8cSSatish Balay 1246a30f8f8cSSatish Balay PetscFunctionBegin; 1247a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1248a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1249a30f8f8cSSatish Balay PetscFunctionReturn(0); 1250a30f8f8cSSatish Balay } 1251a30f8f8cSSatish Balay 12524a2ae208SSatish Balay #undef __FUNCT__ 12534a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1254a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1255a30f8f8cSSatish Balay { 1256a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1257a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1258a30f8f8cSSatish Balay int ierr; 1259a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1260a30f8f8cSSatish Balay 1261a30f8f8cSSatish Balay PetscFunctionBegin; 1262f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1263a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1264a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1265a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1266a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1267a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1268a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1269a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1270a30f8f8cSSatish Balay info->nz_used = isend[0]; 1271a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1272a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1273a30f8f8cSSatish Balay info->memory = isend[3]; 1274a30f8f8cSSatish Balay info->mallocs = isend[4]; 1275a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1276d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1277a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1278a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1279a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1280a30f8f8cSSatish Balay info->memory = irecv[3]; 1281a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1282a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1283d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1284a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1285a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1286a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1287a30f8f8cSSatish Balay info->memory = irecv[3]; 1288a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1289a30f8f8cSSatish Balay } else { 129029bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1291a30f8f8cSSatish Balay } 1292f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1293f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1294f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1295f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1296a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1297a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1298a30f8f8cSSatish Balay info->factor_mallocs = 0; 1299a30f8f8cSSatish Balay PetscFunctionReturn(0); 1300a30f8f8cSSatish Balay } 1301a30f8f8cSSatish Balay 13024a2ae208SSatish Balay #undef __FUNCT__ 13034a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1304a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1305a30f8f8cSSatish Balay { 1306a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1307a30f8f8cSSatish Balay int ierr; 1308a30f8f8cSSatish Balay 1309a30f8f8cSSatish Balay PetscFunctionBegin; 1310e98b92d7SKris Buschelman switch (op) { 1311e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1312e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1313e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1314e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1315e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1316e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1317e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1318a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1320e98b92d7SKris Buschelman break; 1321e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1322a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1323a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1324a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1325e98b92d7SKris Buschelman break; 1326e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1327e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1328e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1329b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1330e98b92d7SKris Buschelman break; 1331e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1332a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1333a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1334a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1335e98b92d7SKris Buschelman break; 1336e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1337a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1338e98b92d7SKris Buschelman break; 1339e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 134029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1341e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1342a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1343e98b92d7SKris Buschelman break; 13449a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13459a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13469a4540c5SBarry Smith case MAT_HERMITIAN: 13479a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 134877e54ba9SKris Buschelman case MAT_SYMMETRIC: 134977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13509a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13519a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13529a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 135377e54ba9SKris Buschelman break; 1354e98b92d7SKris Buschelman default: 135529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1356a30f8f8cSSatish Balay } 1357a30f8f8cSSatish Balay PetscFunctionReturn(0); 1358a30f8f8cSSatish Balay } 1359a30f8f8cSSatish Balay 13604a2ae208SSatish Balay #undef __FUNCT__ 13618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 13628115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1363a30f8f8cSSatish Balay { 13648115998fSBarry Smith int ierr; 1365a30f8f8cSSatish Balay PetscFunctionBegin; 1366999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13678115998fSBarry Smith PetscFunctionReturn(0); 1368a30f8f8cSSatish Balay } 1369a30f8f8cSSatish Balay 13704a2ae208SSatish Balay #undef __FUNCT__ 13714a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1372a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1373a30f8f8cSSatish Balay { 1374a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1375a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1376a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1377a30f8f8cSSatish Balay 1378a30f8f8cSSatish Balay PetscFunctionBegin; 1379a30f8f8cSSatish Balay if (ll != rr) { 138029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1381a30f8f8cSSatish Balay } 1382a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay if (rr) { 1384a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 138529bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1386a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1387a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1388a30f8f8cSSatish Balay /*} if (ll) { */ 1389a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 139029bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1391a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1392a30f8f8cSSatish Balay /* } */ 1393a30f8f8cSSatish Balay /* scale the diagonal block */ 1394a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay 1396a30f8f8cSSatish Balay /* if (rr) { */ 1397a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1398a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1399a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1400a30f8f8cSSatish Balay } 1401a30f8f8cSSatish Balay 1402a30f8f8cSSatish Balay PetscFunctionReturn(0); 1403a30f8f8cSSatish Balay } 1404a30f8f8cSSatish Balay 14054a2ae208SSatish Balay #undef __FUNCT__ 14064a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1407268466fbSBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1408a30f8f8cSSatish Balay { 1409a30f8f8cSSatish Balay PetscFunctionBegin; 1410c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1411a30f8f8cSSatish Balay } 1412a30f8f8cSSatish Balay 14134a2ae208SSatish Balay #undef __FUNCT__ 14144a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1415a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1416a30f8f8cSSatish Balay { 1417a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1418a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1419a30f8f8cSSatish Balay static int called = 0; 1420a30f8f8cSSatish Balay int ierr; 1421a30f8f8cSSatish Balay 1422a30f8f8cSSatish Balay PetscFunctionBegin; 1423a30f8f8cSSatish Balay if (!a->rank) { 1424a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1425a30f8f8cSSatish Balay } 1426a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1427a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1428a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1429a30f8f8cSSatish Balay PetscFunctionReturn(0); 1430a30f8f8cSSatish Balay } 1431a30f8f8cSSatish Balay 14324a2ae208SSatish Balay #undef __FUNCT__ 14334a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1434a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1435a30f8f8cSSatish Balay { 1436f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1437a30f8f8cSSatish Balay int ierr; 1438a30f8f8cSSatish Balay 1439a30f8f8cSSatish Balay PetscFunctionBegin; 1440a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1441a30f8f8cSSatish Balay PetscFunctionReturn(0); 1442a30f8f8cSSatish Balay } 1443a30f8f8cSSatish Balay 1444a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1445a30f8f8cSSatish Balay 14464a2ae208SSatish Balay #undef __FUNCT__ 14474a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1448a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1449a30f8f8cSSatish Balay { 1450a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1451a30f8f8cSSatish Balay Mat a,b,c,d; 1452a30f8f8cSSatish Balay PetscTruth flg; 1453a30f8f8cSSatish Balay int ierr; 1454a30f8f8cSSatish Balay 1455a30f8f8cSSatish Balay PetscFunctionBegin; 1456a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1457a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1458a30f8f8cSSatish Balay 1459a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1460a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1461a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1462a30f8f8cSSatish Balay } 1463a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1464a30f8f8cSSatish Balay PetscFunctionReturn(0); 1465a30f8f8cSSatish Balay } 1466a30f8f8cSSatish Balay 14674a2ae208SSatish Balay #undef __FUNCT__ 14684a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1469273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1470273d9f13SBarry Smith { 1471273d9f13SBarry Smith int ierr; 1472273d9f13SBarry Smith 1473273d9f13SBarry Smith PetscFunctionBegin; 1474273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1475273d9f13SBarry Smith PetscFunctionReturn(0); 1476273d9f13SBarry Smith } 1477a5e6ed63SBarry Smith 1478a5e6ed63SBarry Smith #undef __FUNCT__ 1479a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 1480a5e6ed63SBarry Smith int MatGetSubMatrices_MPISBAIJ(Mat A,int n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1481a5e6ed63SBarry Smith { 1482a5e6ed63SBarry Smith int i,ierr; 1483a5e6ed63SBarry Smith PetscTruth flg; 1484a5e6ed63SBarry Smith 1485a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1486a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1487a5e6ed63SBarry Smith if (!flg) { 1488a5e6ed63SBarry Smith SETERRQ(1,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1489a5e6ed63SBarry Smith } 1490a5e6ed63SBarry Smith } 1491a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1492a5e6ed63SBarry Smith PetscFunctionReturn(0); 1493a5e6ed63SBarry Smith } 1494a5e6ed63SBarry Smith 1495a5e6ed63SBarry Smith 1496a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1497a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1498a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1499a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1500a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1501a9d4b620SHong Zhang MatMult_MPISBAIJ, 150297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1503a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1504a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 150897304618SKris Buschelman /*10*/ 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 15112798e883SHong Zhang MatRelax_MPISBAIJ, 1512a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 151397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1514a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1515a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1516a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1517a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 151897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1519a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1522a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 152397304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 152897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1529b5df2d14SHong Zhang 0, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 153397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 153897304618SKris Buschelman /*40*/ 0, 1539a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 15400b15b8e2SSatish Balay 0, 1541a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1542a30f8f8cSSatish Balay 0, 154397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1544a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay 0, 1547a30f8f8cSSatish Balay 0, 154897304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1549a30f8f8cSSatish Balay 0, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 155397304618SKris Buschelman /*55*/ 0, 1554a30f8f8cSSatish Balay 0, 1555a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1556a30f8f8cSSatish Balay 0, 1557a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 155897304618SKris Buschelman /*60*/ 0, 1559a30f8f8cSSatish Balay 0, 1560a30f8f8cSSatish Balay 0, 15618a124369SBarry Smith MatGetPetscMaps_Petsc, 156224d5174aSHong Zhang 0, 156397304618SKris Buschelman /*65*/ 0, 156424d5174aSHong Zhang 0, 156524d5174aSHong Zhang 0, 156624d5174aSHong Zhang 0, 156724d5174aSHong Zhang 0, 156897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 156924d5174aSHong Zhang 0, 157097304618SKris Buschelman 0, 157197304618SKris Buschelman 0, 157297304618SKris Buschelman 0, 157397304618SKris Buschelman /*75*/ 0, 157497304618SKris Buschelman 0, 157597304618SKris Buschelman 0, 157697304618SKris Buschelman 0, 157797304618SKris Buschelman 0, 157897304618SKris Buschelman /*80*/ 0, 157997304618SKris Buschelman 0, 158097304618SKris Buschelman 0, 158197304618SKris Buschelman 0, 158297304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ 158397304618SKris Buschelman }; 1584a30f8f8cSSatish Balay 1585a30f8f8cSSatish Balay 1586a30f8f8cSSatish Balay EXTERN_C_BEGIN 15874a2ae208SSatish Balay #undef __FUNCT__ 15884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1589a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1590a30f8f8cSSatish Balay { 1591a30f8f8cSSatish Balay PetscFunctionBegin; 1592a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1593a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1594a30f8f8cSSatish Balay PetscFunctionReturn(0); 1595a30f8f8cSSatish Balay } 1596a30f8f8cSSatish Balay EXTERN_C_END 1597a30f8f8cSSatish Balay 1598273d9f13SBarry Smith EXTERN_C_BEGIN 15994a2ae208SSatish Balay #undef __FUNCT__ 1600a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1601a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1602a23d5eceSKris Buschelman { 1603a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1604a23d5eceSKris Buschelman int ierr,i,mbs,Mbs; 1605a23d5eceSKris Buschelman 1606a23d5eceSKris Buschelman PetscFunctionBegin; 1607a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1608a23d5eceSKris Buschelman 1609a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1610a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1611a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1612a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1613a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1614a23d5eceSKris Buschelman if (d_nnz) { 1615a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1616a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman } 1619a23d5eceSKris Buschelman if (o_nnz) { 1620a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1621a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1622a23d5eceSKris Buschelman } 1623a23d5eceSKris Buschelman } 1624a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1625a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1626a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1627a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1628a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1629a23d5eceSKris Buschelman 1630a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1631a23d5eceSKris Buschelman mbs = B->m/bs; 1632a23d5eceSKris Buschelman Mbs = B->M/bs; 1633a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1634a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1635a23d5eceSKris Buschelman } 1636a23d5eceSKris Buschelman 1637a23d5eceSKris Buschelman b->bs = bs; 1638a23d5eceSKris Buschelman b->bs2 = bs*bs; 1639a23d5eceSKris Buschelman b->mbs = mbs; 1640a23d5eceSKris Buschelman b->nbs = mbs; 1641a23d5eceSKris Buschelman b->Mbs = Mbs; 1642a23d5eceSKris Buschelman b->Nbs = Mbs; 1643a23d5eceSKris Buschelman 1644a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1645a23d5eceSKris Buschelman b->rowners[0] = 0; 1646a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1647a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1648a23d5eceSKris Buschelman } 1649a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1650a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1651a23d5eceSKris Buschelman b->cstart = b->rstart; 1652a23d5eceSKris Buschelman b->cend = b->rend; 1653a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1654a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1655a23d5eceSKris Buschelman } 1656a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1657a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1658a23d5eceSKris Buschelman 1659a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1660a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1661a23d5eceSKris Buschelman 1662a23d5eceSKris Buschelman 1663a23d5eceSKris Buschelman ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1664a23d5eceSKris Buschelman PetscLogObjectParent(B,b->A); 1665a23d5eceSKris Buschelman ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1666a23d5eceSKris Buschelman PetscLogObjectParent(B,b->B); 1667a23d5eceSKris Buschelman 1668a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1669a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1670a23d5eceSKris Buschelman 1671a23d5eceSKris Buschelman PetscFunctionReturn(0); 1672a23d5eceSKris Buschelman } 1673a23d5eceSKris Buschelman EXTERN_C_END 1674a23d5eceSKris Buschelman 16750bad9183SKris Buschelman /*MC 1676fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16770bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16780bad9183SKris Buschelman 16790bad9183SKris Buschelman Options Database Keys: 16800bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16810bad9183SKris Buschelman 16820bad9183SKris Buschelman Level: beginner 16830bad9183SKris Buschelman 16840bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16850bad9183SKris Buschelman M*/ 16860bad9183SKris Buschelman 1687a23d5eceSKris Buschelman EXTERN_C_BEGIN 1688a23d5eceSKris Buschelman #undef __FUNCT__ 16894a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1690b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1691b5df2d14SHong Zhang { 1692b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1693ca54ac64SHong Zhang int ierr; 1694b5df2d14SHong Zhang PetscTruth flg; 1695b5df2d14SHong Zhang 1696b5df2d14SHong Zhang PetscFunctionBegin; 1697b5df2d14SHong Zhang 1698b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1699b0a32e0cSBarry Smith B->data = (void*)b; 1700b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1701b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1702b5df2d14SHong Zhang 1703b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1704b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1705b5df2d14SHong Zhang B->mapping = 0; 1706b5df2d14SHong Zhang B->factor = 0; 1707b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1708b5df2d14SHong Zhang 1709b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1710b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1711b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1712b5df2d14SHong Zhang 1713b5df2d14SHong Zhang /* build local table of row and column ownerships */ 171482502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1715273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1716273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1717b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1718b5df2d14SHong Zhang 1719b5df2d14SHong Zhang /* build cache for off array entries formed */ 1720b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1721b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1722b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1723b5df2d14SHong Zhang b->garray = PETSC_NULL; 1724b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1725b5df2d14SHong Zhang 1726f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1727b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 172864a35ccbSBarry Smith b->setvalueslen = 0; 1729b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1730b5df2d14SHong Zhang #endif 1731b5df2d14SHong Zhang 1732b5df2d14SHong Zhang /* stuff used in block assembly */ 1733b5df2d14SHong Zhang b->barray = 0; 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1736b5df2d14SHong Zhang b->lvec = 0; 1737b5df2d14SHong Zhang b->Mvctx = 0; 173840781036SHong Zhang b->slvec0 = 0; 173940781036SHong Zhang b->slvec0b = 0; 174040781036SHong Zhang b->slvec1 = 0; 174140781036SHong Zhang b->slvec1a = 0; 174240781036SHong Zhang b->slvec1b = 0; 174340781036SHong Zhang b->sMvctx = 0; 1744b5df2d14SHong Zhang 1745b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1746b5df2d14SHong Zhang b->rowindices = 0; 1747b5df2d14SHong Zhang b->rowvalues = 0; 1748b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1749b5df2d14SHong Zhang 1750b5df2d14SHong Zhang /* hash table stuff */ 1751b5df2d14SHong Zhang b->ht = 0; 1752b5df2d14SHong Zhang b->hd = 0; 1753b5df2d14SHong Zhang b->ht_size = 0; 1754b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1755b5df2d14SHong Zhang b->ht_fact = 0; 1756b5df2d14SHong Zhang b->ht_total_ct = 0; 1757b5df2d14SHong Zhang b->ht_insert_ct = 0; 1758b5df2d14SHong Zhang 1759e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1760b5df2d14SHong Zhang if (flg) { 1761f6275e2eSBarry Smith PetscReal fact = 1.39; 1762b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1763e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1764b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1765b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1766b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1767b5df2d14SHong Zhang } 1768b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1769b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1770b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1771b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1772b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1773b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1774b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1775b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1776b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1777a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1778a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1779a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1780b5df2d14SHong Zhang PetscFunctionReturn(0); 1781b5df2d14SHong Zhang } 1782273d9f13SBarry Smith EXTERN_C_END 1783b5df2d14SHong Zhang 1784209238afSKris Buschelman /*MC 1785002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1786209238afSKris Buschelman 1787209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1788209238afSKris Buschelman and MATMPISBAIJ otherwise. 1789209238afSKris Buschelman 1790209238afSKris Buschelman Options Database Keys: 1791209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1792209238afSKris Buschelman 1793209238afSKris Buschelman Level: beginner 1794209238afSKris Buschelman 1795209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1796209238afSKris Buschelman M*/ 1797209238afSKris Buschelman 1798209238afSKris Buschelman EXTERN_C_BEGIN 1799209238afSKris Buschelman #undef __FUNCT__ 1800209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1801209238afSKris Buschelman int MatCreate_SBAIJ(Mat A) { 1802209238afSKris Buschelman int ierr,size; 1803209238afSKris Buschelman 1804209238afSKris Buschelman PetscFunctionBegin; 1805209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1806209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1807209238afSKris Buschelman if (size == 1) { 1808209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1809209238afSKris Buschelman } else { 1810209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1811209238afSKris Buschelman } 1812209238afSKris Buschelman PetscFunctionReturn(0); 1813209238afSKris Buschelman } 1814209238afSKris Buschelman EXTERN_C_END 1815209238afSKris Buschelman 18164a2ae208SSatish Balay #undef __FUNCT__ 18174a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1818b5df2d14SHong Zhang /*@C 1819b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1820b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1821b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1822b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1823b5df2d14SHong Zhang 1824b5df2d14SHong Zhang Collective on Mat 1825b5df2d14SHong Zhang 1826b5df2d14SHong Zhang Input Parameters: 1827b5df2d14SHong Zhang + A - the matrix 1828b5df2d14SHong Zhang . bs - size of blockk 1829b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1830b5df2d14SHong Zhang submatrix (same for all local rows) 1831b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18326d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18336d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18346d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1835b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1836b5df2d14SHong Zhang submatrix (same for all local rows). 1837b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1838b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1839b5df2d14SHong Zhang each block row) or PETSC_NULL. 1840b5df2d14SHong Zhang 1841b5df2d14SHong Zhang 1842b5df2d14SHong Zhang Options Database Keys: 1843b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1844b5df2d14SHong Zhang block calculations (much slower) 1845b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1846b5df2d14SHong Zhang 1847b5df2d14SHong Zhang Notes: 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1850b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1851b5df2d14SHong Zhang 1852b5df2d14SHong Zhang Storage Information: 1853b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1854b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1855b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1856b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1857b5df2d14SHong Zhang 1858b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1859b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1860b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1861b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1862b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1865b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang .vb 1868b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1869b5df2d14SHong Zhang ------------------- 1870b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1871b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1872b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1873b5df2d14SHong Zhang ------------------- 1874b5df2d14SHong Zhang .ve 1875b5df2d14SHong Zhang 1876b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1877b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18786d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18796d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1880b5df2d14SHong Zhang 18816d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18826d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1883b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1884b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1885b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1886b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1887b5df2d14SHong Zhang matrices. 1888b5df2d14SHong Zhang 1889b5df2d14SHong Zhang Level: intermediate 1890b5df2d14SHong Zhang 1891b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1892b5df2d14SHong Zhang 1893b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1894b5df2d14SHong Zhang @*/ 1895ca01db9bSBarry Smith int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 1896b5df2d14SHong Zhang { 1897ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[],int,const int[]); 1898b5df2d14SHong Zhang 1899b5df2d14SHong Zhang PetscFunctionBegin; 1900a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1901a23d5eceSKris Buschelman if (f) { 1902a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1903b5df2d14SHong Zhang } 1904b5df2d14SHong Zhang PetscFunctionReturn(0); 1905b5df2d14SHong Zhang } 1906b5df2d14SHong Zhang 19074a2ae208SSatish Balay #undef __FUNCT__ 19084a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1909a30f8f8cSSatish Balay /*@C 1910a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1911a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1912a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1913a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1914a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1915a30f8f8cSSatish Balay 1916a30f8f8cSSatish Balay Collective on MPI_Comm 1917a30f8f8cSSatish Balay 1918a30f8f8cSSatish Balay Input Parameters: 1919a30f8f8cSSatish Balay + comm - MPI communicator 1920a30f8f8cSSatish Balay . bs - size of blockk 1921a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1922a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1923a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1924a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1925a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1926a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1927a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1928a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1929a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1930a30f8f8cSSatish Balay submatrix (same for all local rows) 1931a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19326d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19336d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19346d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1935a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1936a30f8f8cSSatish Balay submatrix (same for all local rows). 1937a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1938a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1939a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1940a30f8f8cSSatish Balay 1941a30f8f8cSSatish Balay Output Parameter: 1942a30f8f8cSSatish Balay . A - the matrix 1943a30f8f8cSSatish Balay 1944a30f8f8cSSatish Balay Options Database Keys: 1945a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1946a30f8f8cSSatish Balay block calculations (much slower) 1947a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1948a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1949a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1950a30f8f8cSSatish Balay 1951a30f8f8cSSatish Balay Notes: 1952a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1953a30f8f8cSSatish Balay (possibly both). 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1956a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1957a30f8f8cSSatish Balay 1958a30f8f8cSSatish Balay Storage Information: 1959a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1960a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1961a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1962a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1963a30f8f8cSSatish Balay 1964a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1965a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1966a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1967a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1968a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1969a30f8f8cSSatish Balay 1970a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1971a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1972a30f8f8cSSatish Balay 1973a30f8f8cSSatish Balay .vb 1974a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1975a30f8f8cSSatish Balay ------------------- 1976a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1977a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1978a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1979a30f8f8cSSatish Balay ------------------- 1980a30f8f8cSSatish Balay .ve 1981a30f8f8cSSatish Balay 1982a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1983a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19846d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19856d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1986a30f8f8cSSatish Balay 19876d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19886d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1989a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1990a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1991a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1992a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1993a30f8f8cSSatish Balay matrices. 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay Level: intermediate 1996a30f8f8cSSatish Balay 1997a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1998a30f8f8cSSatish Balay 1999a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2000a30f8f8cSSatish Balay @*/ 2001a30f8f8cSSatish Balay 2002ca01db9bSBarry Smith int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 2003a30f8f8cSSatish Balay { 2004273d9f13SBarry Smith int ierr,size; 2005a30f8f8cSSatish Balay 2006a30f8f8cSSatish Balay PetscFunctionBegin; 2007b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2008273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2009273d9f13SBarry Smith if (size > 1) { 2010b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2011b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2012273d9f13SBarry Smith } else { 2013273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2014273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2015273d9f13SBarry Smith } 2016a30f8f8cSSatish Balay PetscFunctionReturn(0); 2017a30f8f8cSSatish Balay } 2018a30f8f8cSSatish Balay 2019a30f8f8cSSatish Balay 20204a2ae208SSatish Balay #undef __FUNCT__ 20214a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 2022a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2023a30f8f8cSSatish Balay { 2024a30f8f8cSSatish Balay Mat mat; 2025a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2026a30f8f8cSSatish Balay int ierr,len=0; 2027a30f8f8cSSatish Balay 2028a30f8f8cSSatish Balay PetscFunctionBegin; 2029a30f8f8cSSatish Balay *newmat = 0; 2030b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2031b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 2032273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 2033b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2034a30f8f8cSSatish Balay a->bs = oldmat->bs; 2035a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2036a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2037a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2038a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2039a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2040a30f8f8cSSatish Balay 2041a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2042a30f8f8cSSatish Balay a->rend = oldmat->rend; 2043a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2044a30f8f8cSSatish Balay a->cend = oldmat->cend; 2045a30f8f8cSSatish Balay a->size = oldmat->size; 2046a30f8f8cSSatish Balay a->rank = oldmat->rank; 2047a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2048a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2049a30f8f8cSSatish Balay a->rowindices = 0; 2050a30f8f8cSSatish Balay a->rowvalues = 0; 2051a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2052a30f8f8cSSatish Balay a->barray = 0; 2053a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2054a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2055a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2056a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2057a30f8f8cSSatish Balay 2058a30f8f8cSSatish Balay /* hash table stuff */ 2059a30f8f8cSSatish Balay a->ht = 0; 2060a30f8f8cSSatish Balay a->hd = 0; 2061a30f8f8cSSatish Balay a->ht_size = 0; 2062a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2063a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2064a30f8f8cSSatish Balay a->ht_total_ct = 0; 2065a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2066a30f8f8cSSatish Balay 206782502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 2068b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 2069a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 2070a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 2071a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2072a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2073a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2074a30f8f8cSSatish Balay if (oldmat->colmap) { 2075a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2076a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2077a30f8f8cSSatish Balay #else 207882502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2079b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2080a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2081a30f8f8cSSatish Balay #endif 2082a30f8f8cSSatish Balay } else a->colmap = 0; 2083a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 208482502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2085b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2086a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2087a30f8f8cSSatish Balay } else a->garray = 0; 2088a30f8f8cSSatish Balay 2089a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2090b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2091a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2092a30f8f8cSSatish Balay 2093b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 2094a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2095b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2096a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2097b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2098b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay *newmat = mat; 2100a30f8f8cSSatish Balay PetscFunctionReturn(0); 2101a30f8f8cSSatish Balay } 2102a30f8f8cSSatish Balay 2103a30f8f8cSSatish Balay #include "petscsys.h" 2104a30f8f8cSSatish Balay 21054a2ae208SSatish Balay #undef __FUNCT__ 21064a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 21078e9aea5cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2108a30f8f8cSSatish Balay { 2109a30f8f8cSSatish Balay Mat A; 2110a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 211187828ca2SBarry Smith PetscScalar *vals,*buf; 2112a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2113a30f8f8cSSatish Balay MPI_Status status; 2114a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2115a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2116a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2117a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2118a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2119a30f8f8cSSatish Balay 2120a30f8f8cSSatish Balay PetscFunctionBegin; 2121b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2122a30f8f8cSSatish Balay 2123a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2124a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2125a30f8f8cSSatish Balay if (!rank) { 2126b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2128552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2129a30f8f8cSSatish Balay if (header[3] < 0) { 213029bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2131a30f8f8cSSatish Balay } 2132a30f8f8cSSatish Balay } 2133a30f8f8cSSatish Balay 2134a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2135a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2136a30f8f8cSSatish Balay 213729bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2138a30f8f8cSSatish Balay 2139a30f8f8cSSatish Balay /* 2140a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2141a30f8f8cSSatish Balay divisible by the blocksize 2142a30f8f8cSSatish Balay */ 2143a30f8f8cSSatish Balay Mbs = M/bs; 2144a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2145a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2146a30f8f8cSSatish Balay else Mbs++; 2147a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2148b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2149a30f8f8cSSatish Balay } 2150a30f8f8cSSatish Balay 2151a30f8f8cSSatish Balay /* determine ownership of all rows */ 2152a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2153a30f8f8cSSatish Balay m = mbs*bs; 2154b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2155a30f8f8cSSatish Balay browners = rowners + size + 1; 2156a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2157a30f8f8cSSatish Balay rowners[0] = 0; 2158a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2159a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2160a30f8f8cSSatish Balay rstart = rowners[rank]; 2161a30f8f8cSSatish Balay rend = rowners[rank+1]; 2162a30f8f8cSSatish Balay 2163a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 216482502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2165a30f8f8cSSatish Balay if (!rank) { 2166b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2168a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 216982502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2170a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2171a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay } else { 2174a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2175a30f8f8cSSatish Balay } 2176a30f8f8cSSatish Balay 21770222edb1SHong Zhang if (!rank) { /* procs[0] */ 2178a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 217982502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2181a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2182a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2183a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2184a30f8f8cSSatish Balay } 2185a30f8f8cSSatish Balay } 2186a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay 2188a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2189a30f8f8cSSatish Balay maxnz = 0; 2190a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2191a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2192a30f8f8cSSatish Balay } 219382502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay 2195a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2196a30f8f8cSSatish Balay nz = procsnz[0]; 219782502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay mycols = ibuf; 2199a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2200a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2201a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2202a30f8f8cSSatish Balay 2203a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2204a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2205a30f8f8cSSatish Balay nz = procsnz[i]; 2206a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay } 2209a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2210a30f8f8cSSatish Balay if (size != 1) { 2211a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2212a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2214a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay } 2216a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22170222edb1SHong Zhang } else { /* procs[i], i>0 */ 2218a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2219a30f8f8cSSatish Balay nz = 0; 2220a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2221a30f8f8cSSatish Balay nz += locrowlens[i]; 2222a30f8f8cSSatish Balay } 222382502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2224a30f8f8cSSatish Balay mycols = ibuf; 2225a30f8f8cSSatish Balay /* receive message of column indices*/ 2226a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 222829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2229a30f8f8cSSatish Balay } 2230a30f8f8cSSatish Balay 2231a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 223282502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 223482502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2235a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2236a30f8f8cSSatish Balay masked1 = mask + Mbs; 2237a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2238a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2239a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2240a30f8f8cSSatish Balay dcount = 0; 2241a30f8f8cSSatish Balay odcount = 0; 2242a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2243a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2244a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22450222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2246a30f8f8cSSatish Balay if (!mask[tmp]) { 2247a30f8f8cSSatish Balay mask[tmp] = 1; 22480222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22490222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2250a30f8f8cSSatish Balay } 2251a30f8f8cSSatish Balay } 2252a30f8f8cSSatish Balay rowcount++; 2253a30f8f8cSSatish Balay } 2254a30f8f8cSSatish Balay 22550222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22560222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2257a30f8f8cSSatish Balay 2258a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2259a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2260a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2261a30f8f8cSSatish Balay } 2262a30f8f8cSSatish Balay 2263a30f8f8cSSatish Balay /* create our matrix */ 226422191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 226522191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 226622191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2267273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay 2269a30f8f8cSSatish Balay if (!rank) { 227087828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2271a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2272a30f8f8cSSatish Balay nz = procsnz[0]; 2273a30f8f8cSSatish Balay vals = buf; 2274a30f8f8cSSatish Balay mycols = ibuf; 2275a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2276a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2277a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2278a30f8f8cSSatish Balay 2279a30f8f8cSSatish Balay /* insert into matrix */ 2280a30f8f8cSSatish Balay jj = rstart*bs; 2281a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22827e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2283a30f8f8cSSatish Balay mycols += locrowlens[i]; 2284a30f8f8cSSatish Balay vals += locrowlens[i]; 2285a30f8f8cSSatish Balay jj++; 2286a30f8f8cSSatish Balay } 22877e06b45fSHong Zhang 2288a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2289a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2290a30f8f8cSSatish Balay nz = procsnz[i]; 2291a30f8f8cSSatish Balay vals = buf; 2292a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2293a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2294a30f8f8cSSatish Balay } 2295a30f8f8cSSatish Balay /* the last proc */ 2296a30f8f8cSSatish Balay if (size != 1){ 2297a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2298a30f8f8cSSatish Balay vals = buf; 2299a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2300a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2301a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2302a30f8f8cSSatish Balay } 2303a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23047e06b45fSHong Zhang 2305a30f8f8cSSatish Balay } else { 2306a30f8f8cSSatish Balay /* receive numeric values */ 230787828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2308a30f8f8cSSatish Balay 2309a30f8f8cSSatish Balay /* receive message of values*/ 2310a30f8f8cSSatish Balay vals = buf; 2311a30f8f8cSSatish Balay mycols = ibuf; 2312a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2313a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 231429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2315a30f8f8cSSatish Balay 2316a30f8f8cSSatish Balay /* insert into matrix */ 2317a30f8f8cSSatish Balay jj = rstart*bs; 2318a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2319a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2320a30f8f8cSSatish Balay mycols += locrowlens[i]; 2321a30f8f8cSSatish Balay vals += locrowlens[i]; 2322a30f8f8cSSatish Balay jj++; 2323a30f8f8cSSatish Balay } 2324a30f8f8cSSatish Balay } 23257e06b45fSHong Zhang 2326a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2327a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2328a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2329a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2330a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2331a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2332a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2333a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 233422191285SKris Buschelman *newmat = A; 2335a30f8f8cSSatish Balay PetscFunctionReturn(0); 2336a30f8f8cSSatish Balay } 2337a30f8f8cSSatish Balay 23384a2ae208SSatish Balay #undef __FUNCT__ 23394a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2340a30f8f8cSSatish Balay /*@ 2341a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2342a30f8f8cSSatish Balay 2343a30f8f8cSSatish Balay Input Parameters: 2344a30f8f8cSSatish Balay . mat - the matrix 2345a30f8f8cSSatish Balay . fact - factor 2346a30f8f8cSSatish Balay 2347a30f8f8cSSatish Balay Collective on Mat 2348a30f8f8cSSatish Balay 2349a30f8f8cSSatish Balay Level: advanced 2350a30f8f8cSSatish Balay 2351a30f8f8cSSatish Balay Notes: 2352a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2353a30f8f8cSSatish Balay 2354a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2355a30f8f8cSSatish Balay 2356a30f8f8cSSatish Balay .seealso: MatSetOption() 2357a30f8f8cSSatish Balay @*/ 2358a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2359a30f8f8cSSatish Balay { 2360a30f8f8cSSatish Balay PetscFunctionBegin; 236129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 236296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2363a30f8f8cSSatish Balay } 236424d5174aSHong Zhang 23654a2ae208SSatish Balay #undef __FUNCT__ 23664a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 236724d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 236824d5174aSHong Zhang { 236924d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2370f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2371ca54ac64SHong Zhang PetscReal atmp; 237287828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2373ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2374154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 237587828ca2SBarry Smith PetscScalar *va; 23768a1c53f2SBarry Smith MatScalar *ba; 2377f4c0e9e4SHong Zhang MPI_Status stat; 237824d5174aSHong Zhang 237924d5174aSHong Zhang PetscFunctionBegin; 2380d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2381*b1d4fb26SBarry Smith ierr = VecGetArrayFast(v,&va);CHKERRQ(ierr); 2382f4c0e9e4SHong Zhang 238356faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 238456faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2385f4c0e9e4SHong Zhang 2386f4c0e9e4SHong Zhang bs = a->bs; 2387f4c0e9e4SHong Zhang mbs = a->mbs; 2388f4c0e9e4SHong Zhang Mbs = a->Mbs; 2389f4c0e9e4SHong Zhang ba = b->a; 2390f4c0e9e4SHong Zhang bi = b->i; 2391f4c0e9e4SHong Zhang bj = b->j; 2392ca54ac64SHong Zhang /* 239356faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 239456faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2395ca54ac64SHong Zhang */ 2396f4c0e9e4SHong Zhang 2397f4c0e9e4SHong Zhang /* find ownerships */ 2398f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2399f4c0e9e4SHong Zhang /* 240004d41228SHong Zhang if (!rank){ 240104d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2402f4c0e9e4SHong Zhang } 2403f4c0e9e4SHong Zhang */ 2404f4c0e9e4SHong Zhang 2405f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 240682502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2407ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2408f4c0e9e4SHong Zhang 2409f4c0e9e4SHong Zhang /* row_max for B */ 2410b8475685SHong Zhang if (rank != size-1){ 2411f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2412f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2413f4c0e9e4SHong Zhang brow = bs*i; 2414f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2415f4c0e9e4SHong Zhang bcol = bs*(*bj); 2416f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2417ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 241804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2419ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2420f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2421f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2422ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2423f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2424ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2425f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2426f4c0e9e4SHong Zhang } 2427f4c0e9e4SHong Zhang } 2428f4c0e9e4SHong Zhang bj++; 2429f4c0e9e4SHong Zhang } 2430f4c0e9e4SHong Zhang } 243104d41228SHong Zhang /* 243204d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 243304d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 243404d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 243504d41228SHong Zhang */ 2436f4c0e9e4SHong Zhang 2437f4c0e9e4SHong Zhang /* send values to its owners */ 2438f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2439f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2440ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 244156faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2442ca54ac64SHong Zhang /* 244356faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 244456faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2445ca54ac64SHong Zhang */ 2446ca54ac64SHong Zhang } 2447f4c0e9e4SHong Zhang } 2448f4c0e9e4SHong Zhang 2449f4c0e9e4SHong Zhang /* receive values */ 2450ca54ac64SHong Zhang if (rank){ 2451f4c0e9e4SHong Zhang rvalues = work; 2452ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2453f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 245456faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2455f4c0e9e4SHong Zhang /* process values */ 2456f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2457ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2458f4c0e9e4SHong Zhang } 2459ca54ac64SHong Zhang /* 246056faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 246156faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2462ca54ac64SHong Zhang */ 2463f4c0e9e4SHong Zhang } 2464ca54ac64SHong Zhang } 2465f4c0e9e4SHong Zhang 2466*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(v,&va);CHKERRQ(ierr); 2467ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 246824d5174aSHong Zhang PetscFunctionReturn(0); 246924d5174aSHong Zhang } 24702798e883SHong Zhang 24712798e883SHong Zhang #undef __FUNCT__ 24722798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2473c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 24742798e883SHong Zhang { 24752798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2476ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2477ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2478ffe4fb16SHong Zhang Vec bb1; 2479ffe4fb16SHong Zhang 2480ffe4fb16SHong Zhang PetscFunctionBegin; 2481ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2482ffe4fb16SHong Zhang if (bs > 1) 2483ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2484ffe4fb16SHong Zhang 2485ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2486ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2487ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2488ffe4fb16SHong Zhang its--; 2489ffe4fb16SHong Zhang } 2490ffe4fb16SHong Zhang 2491ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2492ffe4fb16SHong Zhang while (its--){ 2493ffe4fb16SHong Zhang 2494ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2495ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2496ffe4fb16SHong Zhang 2497ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2498*b1d4fb26SBarry Smith ierr = VecGetArrayFast(mat->slvec0,&ptr);CHKERRQ(ierr); 2499*b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 2500ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2501*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(mat->slvec0,&ptr);CHKERRQ(ierr); 2502ffe4fb16SHong Zhang 2503ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2504ffe4fb16SHong Zhang 2505ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2506*b1d4fb26SBarry Smith ierr = VecGetArrayFast(mat->slvec1,&ptr);CHKERRQ(ierr); 2507*b1d4fb26SBarry Smith ierr = VecGetArrayFast(bb,&b);CHKERRQ(ierr); 2508ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2509*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(mat->slvec1,&ptr);CHKERRQ(ierr); 2510ffe4fb16SHong Zhang 2511ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2512ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2513ffe4fb16SHong Zhang 2514ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2515*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 2516*b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(bb,&b);CHKERRQ(ierr); 2517ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2518ffe4fb16SHong Zhang 2519ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2520ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2521ffe4fb16SHong Zhang 2522ffe4fb16SHong Zhang /* local diagonal sweep */ 2523ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2524ffe4fb16SHong Zhang } 2525ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2526ffe4fb16SHong Zhang } else { 2527ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2528ffe4fb16SHong Zhang } 2529ffe4fb16SHong Zhang PetscFunctionReturn(0); 2530ffe4fb16SHong Zhang } 2531ffe4fb16SHong Zhang 2532ffe4fb16SHong Zhang #undef __FUNCT__ 2533ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2534ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2535ffe4fb16SHong Zhang { 2536ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 25372798e883SHong Zhang int ierr; 2538d05c616dSSatish Balay PetscScalar mone=-1.0; 25392798e883SHong Zhang Vec lvec1,bb1; 25402798e883SHong Zhang 25412798e883SHong Zhang PetscFunctionBegin; 254291723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 25432798e883SHong Zhang if (mat->bs > 1) 25442798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25452798e883SHong Zhang 2546c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25472798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2548bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25492798e883SHong Zhang its--; 25502798e883SHong Zhang } 25512798e883SHong Zhang 25522798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25532798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25542798e883SHong Zhang while (its--){ 25552798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25562798e883SHong Zhang 25572798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25582798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25592798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25602798e883SHong Zhang 25612798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25622798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25632798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25642798e883SHong Zhang 25652798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25662798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25672798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25682798e883SHong Zhang 25692798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25702798e883SHong Zhang 2571c14dc6b6SHong Zhang /* diagonal sweep */ 2572bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25732798e883SHong Zhang } 25742798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25752798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2576c14dc6b6SHong Zhang } else { 2577c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2578c14dc6b6SHong Zhang } 25792798e883SHong Zhang PetscFunctionReturn(0); 25802798e883SHong Zhang } 25812798e883SHong Zhang 2582