1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined" 24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 24136bd2089SBarry Smith { 24236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 24336bd2089SBarry Smith PetscErrorCode ierr; 24436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 24536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 24636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 24736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24836bd2089SBarry Smith const PetscScalar *value = v; 24936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 25036bd2089SBarry Smith 25136bd2089SBarry Smith PetscFunctionBegin; 25236bd2089SBarry Smith if (col < row) { 25336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 25436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 25536bd2089SBarry Smith } 25636bd2089SBarry Smith rp = aj + ai[row]; 25736bd2089SBarry Smith ap = aa + bs2*ai[row]; 25836bd2089SBarry Smith rmax = imax[row]; 25936bd2089SBarry Smith nrow = ailen[row]; 26036bd2089SBarry Smith value = v; 26136bd2089SBarry Smith low = 0; 26236bd2089SBarry Smith high = nrow; 26336bd2089SBarry Smith 26436bd2089SBarry Smith while (high-low > 7) { 26536bd2089SBarry Smith t = (low+high)/2; 26636bd2089SBarry Smith if (rp[t] > col) high = t; 26736bd2089SBarry Smith else low = t; 26836bd2089SBarry Smith } 26936bd2089SBarry Smith for (i=low; i<high; i++) { 27036bd2089SBarry Smith if (rp[i] > col) break; 27136bd2089SBarry Smith if (rp[i] == col) { 27236bd2089SBarry Smith bap = ap + bs2*i; 27336bd2089SBarry Smith if (roworiented) { 27436bd2089SBarry Smith if (is == ADD_VALUES) { 27536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27736bd2089SBarry Smith bap[jj] += *value++; 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } 28036bd2089SBarry Smith } else { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 28336bd2089SBarry Smith bap[jj] = *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } 28736bd2089SBarry Smith } else { 28836bd2089SBarry Smith if (is == ADD_VALUES) { 28936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29136bd2089SBarry Smith *bap++ += *value++; 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith } else { 29536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29736bd2089SBarry Smith *bap++ = *value++; 29836bd2089SBarry Smith } 29936bd2089SBarry Smith } 30036bd2089SBarry Smith } 30136bd2089SBarry Smith } 30236bd2089SBarry Smith goto noinsert2; 30336bd2089SBarry Smith } 30436bd2089SBarry Smith } 30536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 30636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 30736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30836bd2089SBarry Smith N = nrow++ - 1; high++; 30936bd2089SBarry Smith /* shift up all the later entries in this row */ 31036bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 31136bd2089SBarry Smith rp[ii+1] = rp[ii]; 31236bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 31336bd2089SBarry Smith } 31436bd2089SBarry Smith if (N >= i) { 31536bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 31636bd2089SBarry Smith } 31736bd2089SBarry Smith rp[i] = col; 31836bd2089SBarry Smith bap = ap + bs2*i; 31936bd2089SBarry Smith if (roworiented) { 32036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 32236bd2089SBarry Smith bap[jj] = *value++; 32336bd2089SBarry Smith } 32436bd2089SBarry Smith } 32536bd2089SBarry Smith } else { 32636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32836bd2089SBarry Smith *bap++ = *value++; 32936bd2089SBarry Smith } 33036bd2089SBarry Smith } 33136bd2089SBarry Smith } 33236bd2089SBarry Smith noinsert2:; 33336bd2089SBarry Smith ailen[row] = nrow; 33436bd2089SBarry Smith PetscFunctionReturn(0); 33536bd2089SBarry Smith } 33636bd2089SBarry Smith 33736bd2089SBarry Smith #undef __FUNCT__ 33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 33936bd2089SBarry Smith /* 34036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 34136bd2089SBarry Smith */ 34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34336bd2089SBarry Smith { 34436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscErrorCode ierr; 34836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 35036bd2089SBarry Smith const PetscScalar *value = v; 35136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35236bd2089SBarry Smith 35336bd2089SBarry Smith PetscFunctionBegin; 35436bd2089SBarry Smith rp = aj + ai[row]; 35536bd2089SBarry Smith ap = aa + bs2*ai[row]; 35636bd2089SBarry Smith rmax = imax[row]; 35736bd2089SBarry Smith nrow = ailen[row]; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith bap[jj] += value[jj]; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith bap += bs; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } else { 39336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 39436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39536bd2089SBarry Smith bap[jj] = value[jj]; 39636bd2089SBarry Smith } 39736bd2089SBarry Smith bap += bs; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith goto noinsert2; 40236bd2089SBarry Smith } 40336bd2089SBarry Smith } 40436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 40636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40736bd2089SBarry Smith N = nrow++ - 1; high++; 40836bd2089SBarry Smith /* shift up all the later entries in this row */ 40936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 41036bd2089SBarry Smith rp[ii+1] = rp[ii]; 41136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith if (N >= i) { 41436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp[i] = col; 41736bd2089SBarry Smith bap = ap + bs2*i; 41836bd2089SBarry Smith if (roworiented) { 41936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 42136bd2089SBarry Smith bap[jj] = *value++; 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith } else { 42536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42736bd2089SBarry Smith *bap++ = *value++; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith } 43036bd2089SBarry Smith } 43136bd2089SBarry Smith noinsert2:; 43236bd2089SBarry Smith ailen[row] = nrow; 43336bd2089SBarry Smith PetscFunctionReturn(0); 43436bd2089SBarry Smith } 43536bd2089SBarry Smith 43636bd2089SBarry Smith #undef __FUNCT__ 437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 43836bd2089SBarry Smith /* 43936bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 44036bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 44136bd2089SBarry Smith */ 442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 443a30f8f8cSSatish Balay { 4440880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 445f15d580aSBarry Smith const MatScalar *value; 446f15d580aSBarry Smith MatScalar *barray =baij->barray; 447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 450899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 451d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4520880e062SHong Zhang 453a30f8f8cSSatish Balay PetscFunctionBegin; 4540880e062SHong Zhang if (!barray) { 455785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4560880e062SHong Zhang baij->barray = barray; 4570880e062SHong Zhang } 4580880e062SHong Zhang 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang stepval = (n-1)*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang stepval = (m-1)*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (i=0; i<m; i++) { 4650880e062SHong Zhang if (im[i] < 0) continue; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4680880e062SHong Zhang #endif 4690880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4700880e062SHong Zhang row = im[i] - rstart; 4710880e062SHong Zhang for (j=0; j<n; j++) { 472f3f98c53SJed Brown if (im[i] > in[j]) { 473f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 474e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 475f3f98c53SJed Brown } 4760880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4770880e062SHong Zhang if ((roworiented) && (n == 1)) { 478f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4790880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 480f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4810880e062SHong Zhang } else { /* Here a copy is required */ 4820880e062SHong Zhang if (roworiented) { 4830880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4840880e062SHong Zhang } else { 4850880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4860880e062SHong Zhang } 4870880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4880880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4890880e062SHong Zhang *barray++ = *value++; 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang barray -=bs2; 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4960880e062SHong Zhang col = in[j] - cstart; 49736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 49826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 500bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang else { 5030880e062SHong Zhang if (mat->was_assembled) { 5040880e062SHong Zhang if (!baij->colmap) { 505ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5060880e062SHong Zhang } 5070880e062SHong Zhang 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5101302d50aSBarry Smith { PetscInt data; 5110880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 512e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5130880e062SHong Zhang } 5140880e062SHong Zhang #else 515e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5160880e062SHong Zhang #endif 5170880e062SHong Zhang #endif 5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5190880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5200880e062SHong Zhang col = (col - 1)/bs; 5210880e062SHong Zhang #else 5220880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5230880e062SHong Zhang #endif 5240880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 525ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5260880e062SHong Zhang col = in[j]; 5270880e062SHong Zhang } 52826fbe8dcSKarl Rupp } else col = in[j]; 52936bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5300880e062SHong Zhang } 5310880e062SHong Zhang } 5320880e062SHong Zhang } else { 533bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5340880e062SHong Zhang if (!baij->donotstash) { 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5370880e062SHong Zhang } else { 5380880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5390880e062SHong Zhang } 5400880e062SHong Zhang } 5410880e062SHong Zhang } 5420880e062SHong Zhang } 5430880e062SHong Zhang PetscFunctionReturn(0); 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 553d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 558e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 563e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data--; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 594dfbe8321SBarry Smith PetscErrorCode ierr; 595a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay if (baij->size == 1) { 599a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 600a30f8f8cSSatish Balay } else { 601a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 602785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 605a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 607*b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6088f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 609a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6100b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6110b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6120b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6130b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 614899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 615d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6160b8dc8d2SHong Zhang MatScalar *v; 6170b8dc8d2SHong Zhang 618dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 619d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6200b8dc8d2SHong Zhang /* Amat */ 6210b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6220b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6230b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6240b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6250b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6260b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6270b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6280b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6290b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6300b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6310b8dc8d2SHong Zhang /* non-diagonal block */ 6320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6330b8dc8d2SHong Zhang } 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 6360b8dc8d2SHong Zhang } 6370b8dc8d2SHong Zhang /* Bmat */ 6380b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6390b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6400b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6410b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6420b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6430b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6440b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6450b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6460b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6470b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6480b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6490b8dc8d2SHong Zhang } 6500b8dc8d2SHong Zhang } 6510b8dc8d2SHong Zhang } 6520b8dc8d2SHong Zhang } 653*b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6540b8dc8d2SHong Zhang *norm = 0.0; 655d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6560b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6570b8dc8d2SHong Zhang } 65874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 659f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 660a30f8f8cSSatish Balay } 661a30f8f8cSSatish Balay PetscFunctionReturn(0); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 6644a2ae208SSatish Balay #undef __FUNCT__ 6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 667a30f8f8cSSatish Balay { 668a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 669dfbe8321SBarry Smith PetscErrorCode ierr; 6701302d50aSBarry Smith PetscInt nstash,reallocs; 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay PetscFunctionBegin; 67326fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 674a30f8f8cSSatish Balay 675d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6761e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 677a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6781e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 679a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6801e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 681a30f8f8cSSatish Balay PetscFunctionReturn(0); 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay 6844a2ae208SSatish Balay #undef __FUNCT__ 6854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 686dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 687a30f8f8cSSatish Balay { 688a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 689a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6906849ba73SBarry Smith PetscErrorCode ierr; 69113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 692e44c0bd4SBarry Smith PetscInt *row,*col; 693ace3abfcSBarry Smith PetscBool other_disassembled; 69413f74950SBarry Smith PetscMPIInt n; 695ace3abfcSBarry Smith PetscBool r1,r2,r3; 696a30f8f8cSSatish Balay MatScalar *val; 697a30f8f8cSSatish Balay 69891c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 699a30f8f8cSSatish Balay PetscFunctionBegin; 7004cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 701a30f8f8cSSatish Balay while (1) { 702a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 703a30f8f8cSSatish Balay if (!flg) break; 704a30f8f8cSSatish Balay 705a30f8f8cSSatish Balay for (i=0; i<n;) { 706a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 70726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 70826fbe8dcSKarl Rupp if (row[j] != rstart) break; 70926fbe8dcSKarl Rupp } 710a30f8f8cSSatish Balay if (j < n) ncols = j-i; 711a30f8f8cSSatish Balay else ncols = n-i; 712a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7134b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 714a30f8f8cSSatish Balay i = j; 715a30f8f8cSSatish Balay } 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 718a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 719a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 720a30f8f8cSSatish Balay restore the original flags */ 721a30f8f8cSSatish Balay r1 = baij->roworiented; 722a30f8f8cSSatish Balay r2 = a->roworiented; 72391c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 72426fbe8dcSKarl Rupp 725a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 726a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 72726fbe8dcSKarl Rupp 72891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 729a30f8f8cSSatish Balay while (1) { 730a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 731a30f8f8cSSatish Balay if (!flg) break; 732a30f8f8cSSatish Balay 733a30f8f8cSSatish Balay for (i=0; i<n;) { 734a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 73526fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 73626fbe8dcSKarl Rupp if (row[j] != rstart) break; 73726fbe8dcSKarl Rupp } 738a30f8f8cSSatish Balay if (j < n) ncols = j-i; 739a30f8f8cSSatish Balay else ncols = n-i; 7404b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 741a30f8f8cSSatish Balay i = j; 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 74526fbe8dcSKarl Rupp 746a30f8f8cSSatish Balay baij->roworiented = r1; 747a30f8f8cSSatish Balay a->roworiented = r2; 74826fbe8dcSKarl Rupp 74991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 750a30f8f8cSSatish Balay } 751a30f8f8cSSatish Balay 752a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 756a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 757a30f8f8cSSatish Balay /* 758a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 759a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 760a30f8f8cSSatish Balay */ 761a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 762*b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 763a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 764ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay 768a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 76940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 773a30f8f8cSSatish Balay 77474ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77526fbe8dcSKarl Rupp 776a30f8f8cSSatish Balay baij->rowvalues = 0; 7774f9cfa9eSBarry Smith 7784f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7794f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 780e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 781*b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 782e56f5c9eSBarry Smith } 783a30f8f8cSSatish Balay PetscFunctionReturn(0); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay 7867da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 787dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7889804daf3SBarry Smith #include <petscdraw.h> 7894a2ae208SSatish Balay #undef __FUNCT__ 7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7916849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 792a30f8f8cSSatish Balay { 793a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 794dfbe8321SBarry Smith PetscErrorCode ierr; 795d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 7967da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 797ace3abfcSBarry Smith PetscBool iascii,isdraw; 798b0a32e0cSBarry Smith PetscViewer sviewer; 799f3ef73ceSBarry Smith PetscViewerFormat format; 800a30f8f8cSSatish Balay 801a30f8f8cSSatish Balay PetscFunctionBegin; 802251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 803251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 80432077d6dSBarry Smith if (iascii) { 805b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 806456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 807a30f8f8cSSatish Balay MatInfo info; 808ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 809a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8101575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 8117b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 812a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 813e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 815e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 816b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8171575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 81807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 819a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 820a30f8f8cSSatish Balay PetscFunctionReturn(0); 821fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 82277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 823a30f8f8cSSatish Balay PetscFunctionReturn(0); 824c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 825c1490034SHong Zhang PetscFunctionReturn(0); 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay } 828a30f8f8cSSatish Balay 829a30f8f8cSSatish Balay if (isdraw) { 830b0a32e0cSBarry Smith PetscDraw draw; 831ace3abfcSBarry Smith PetscBool isnull; 832b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 833b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay 8367da1fb6eSBarry Smith { 837a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 838a30f8f8cSSatish Balay Mat A; 83965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 841d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 842a30f8f8cSSatish Balay MatScalar *a; 8433e219373SBarry Smith const char *matname; 844a30f8f8cSSatish Balay 845f204ca49SKris Buschelman /* Should this be the same type as mat? */ 846ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 847a30f8f8cSSatish Balay if (!rank) { 848f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 849a30f8f8cSSatish Balay } else { 850f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 851a30f8f8cSSatish Balay } 852f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8530298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8542b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 856a30f8f8cSSatish Balay 857a30f8f8cSSatish Balay /* copy over the A part */ 85865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 859a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 860785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 861a30f8f8cSSatish Balay 862a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 863e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 86426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 865a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 866e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 867a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 868dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 86926fbe8dcSKarl Rupp col++; 87026fbe8dcSKarl Rupp a += bs; 871a30f8f8cSSatish Balay } 872a30f8f8cSSatish Balay } 873a30f8f8cSSatish Balay } 874a30f8f8cSSatish Balay /* copy over the B part */ 87565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 87665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 877a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 878e9f7bc9eSHong Zhang 879e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 88026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 881a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 882a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 883a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 884799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 88526fbe8dcSKarl Rupp col++; 88626fbe8dcSKarl Rupp a += bs; 887a30f8f8cSSatish Balay } 888a30f8f8cSSatish Balay } 889a30f8f8cSSatish Balay } 890a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 891a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 892a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 893a30f8f8cSSatish Balay /* 894a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 895b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 896a30f8f8cSSatish Balay */ 8973f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 898ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 8993e219373SBarry Smith if (!rank) { 900ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 9017da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 902a30f8f8cSSatish Balay } 9033f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9041575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9056bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 906a30f8f8cSSatish Balay } 907a30f8f8cSSatish Balay PetscFunctionReturn(0); 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay 9104a2ae208SSatish Balay #undef __FUNCT__ 9114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 912dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 913a30f8f8cSSatish Balay { 914dfbe8321SBarry Smith PetscErrorCode ierr; 915ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 916a30f8f8cSSatish Balay 917a30f8f8cSSatish Balay PetscFunctionBegin; 918251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 919251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 920251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 921251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 92232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 923a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 924a30f8f8cSSatish Balay } 925a30f8f8cSSatish Balay PetscFunctionReturn(0); 926a30f8f8cSSatish Balay } 927a30f8f8cSSatish Balay 9284a2ae208SSatish Balay #undef __FUNCT__ 9294a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 930dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 931a30f8f8cSSatish Balay { 932a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 933dfbe8321SBarry Smith PetscErrorCode ierr; 934a30f8f8cSSatish Balay 935a30f8f8cSSatish Balay PetscFunctionBegin; 936a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 937d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 938a30f8f8cSSatish Balay #endif 939a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 940a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 9416bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 9426bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 943a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 9446bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 945a30f8f8cSSatish Balay #else 94605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 947a30f8f8cSSatish Balay #endif 94805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 9496bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 9506bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 9516bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 9526bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 9536bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 9546bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 9556bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 9566bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 9575755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 95805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 95905b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 9606bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 9616bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 9626bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 963ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 96405b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 965a30f8f8cSSatish Balay #endif 96659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 96759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 968899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 969bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 970901853e0SKris Buschelman 971dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 972bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 973bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 974bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 975bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 976bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 9776214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 9786214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 9796214f412SHong Zhang #endif 980a30f8f8cSSatish Balay PetscFunctionReturn(0); 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay 9834a2ae208SSatish Balay #undef __FUNCT__ 984547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 985547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 986547795f9SHong Zhang { 987547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 988547795f9SHong Zhang PetscErrorCode ierr; 989547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 9906de40e93SBarry Smith PetscScalar *from; 9916de40e93SBarry Smith const PetscScalar *x; 992547795f9SHong Zhang 993547795f9SHong Zhang PetscFunctionBegin; 994547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 995e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 996547795f9SHong Zhang 997547795f9SHong Zhang /* diagonal part */ 998547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 999547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1000547795f9SHong Zhang 1001547795f9SHong Zhang /* subdiagonal part */ 1002547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1003547795f9SHong Zhang 1004547795f9SHong Zhang /* copy x into the vec slvec0 */ 1005547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10066de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1007547795f9SHong Zhang 1008547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1009547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10106de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1011547795f9SHong Zhang 1012547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1013547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1014547795f9SHong Zhang /* supperdiagonal part */ 1015547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1016547795f9SHong Zhang PetscFunctionReturn(0); 1017547795f9SHong Zhang } 1018547795f9SHong Zhang 1019547795f9SHong Zhang #undef __FUNCT__ 1020a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 1021dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1022a9d4b620SHong Zhang { 1023a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1024dfbe8321SBarry Smith PetscErrorCode ierr; 1025d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1026d9ca1df4SBarry Smith PetscScalar *from; 1027d9ca1df4SBarry Smith const PetscScalar *x; 1028a9d4b620SHong Zhang 1029a9d4b620SHong Zhang PetscFunctionBegin; 1030a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1031e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1032a9d4b620SHong Zhang 1033a9d4b620SHong Zhang /* diagonal part */ 1034a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1035fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1036a9d4b620SHong Zhang 1037a9d4b620SHong Zhang /* subdiagonal part */ 1038a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1039fc165ae2SBarry Smith 1040a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10411ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1042d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1043a9d4b620SHong Zhang 1044fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1045fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1046d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1047fc165ae2SBarry Smith 1048fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1049ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1050a9d4b620SHong Zhang /* supperdiagonal part */ 1051a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1052a9d4b620SHong Zhang PetscFunctionReturn(0); 1053a9d4b620SHong Zhang } 1054a9d4b620SHong Zhang 1055a9d4b620SHong Zhang #undef __FUNCT__ 105640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1057dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1058a30f8f8cSSatish Balay { 1059a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1060dfbe8321SBarry Smith PetscErrorCode ierr; 10611302d50aSBarry Smith PetscInt nt; 1062a30f8f8cSSatish Balay 1063a30f8f8cSSatish Balay PetscFunctionBegin; 1064a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1065e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1066e7e72b3dSBarry Smith 1067a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1068e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 106965d70643SHong Zhang 1070ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1071b941877fSHong Zhang /* do diagonal part */ 1072b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1073b941877fSHong Zhang /* do supperdiagonal part */ 1074ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1075b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1076b941877fSHong Zhang /* do subdiagonal part */ 1077b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1078ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1079ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1080a30f8f8cSSatish Balay PetscFunctionReturn(0); 1081a30f8f8cSSatish Balay } 1082a30f8f8cSSatish Balay 10834a2ae208SSatish Balay #undef __FUNCT__ 10844a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1085dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1086a30f8f8cSSatish Balay { 1087de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1088dfbe8321SBarry Smith PetscErrorCode ierr; 1089d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1090d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1091d9ca1df4SBarry Smith const PetscScalar *x; 1092a9d4b620SHong Zhang 1093a9d4b620SHong Zhang PetscFunctionBegin; 1094a9d4b620SHong Zhang /* 1095ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 10960ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1097a9d4b620SHong Zhang */ 1098a9d4b620SHong Zhang /* diagonal part */ 1099a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11002dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1101a9d4b620SHong Zhang 1102a9d4b620SHong Zhang /* subdiagonal part */ 1103a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1104a9d4b620SHong Zhang 1105a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11061ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1107d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1108a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 11091ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1110a9d4b620SHong Zhang 1111ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1112d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1113ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1114a9d4b620SHong Zhang 1115a9d4b620SHong Zhang /* supperdiagonal part */ 1116a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1117a9d4b620SHong Zhang PetscFunctionReturn(0); 1118a9d4b620SHong Zhang } 1119a9d4b620SHong Zhang 1120a9d4b620SHong Zhang #undef __FUNCT__ 1121a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1122dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1123a9d4b620SHong Zhang { 1124a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1125dfbe8321SBarry Smith PetscErrorCode ierr; 1126a30f8f8cSSatish Balay 1127a30f8f8cSSatish Balay PetscFunctionBegin; 1128ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1129b941877fSHong Zhang /* do diagonal part */ 1130b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1131b941877fSHong Zhang /* do supperdiagonal part */ 1132ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1133de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1134de8b6608SHong Zhang 1135b941877fSHong Zhang /* do subdiagonal part */ 1136a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1137ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1138ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay PetscFunctionReturn(0); 1140a30f8f8cSSatish Balay } 1141a30f8f8cSSatish Balay 1142a30f8f8cSSatish Balay /* 1143a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1144a30f8f8cSSatish Balay diagonal block 1145a30f8f8cSSatish Balay */ 11464a2ae208SSatish Balay #undef __FUNCT__ 11474a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1148dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1149a30f8f8cSSatish Balay { 1150a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1151dfbe8321SBarry Smith PetscErrorCode ierr; 1152a30f8f8cSSatish Balay 1153a30f8f8cSSatish Balay PetscFunctionBegin; 1154e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1155a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1156a30f8f8cSSatish Balay PetscFunctionReturn(0); 1157a30f8f8cSSatish Balay } 1158a30f8f8cSSatish Balay 11594a2ae208SSatish Balay #undef __FUNCT__ 11604a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1161f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1162a30f8f8cSSatish Balay { 1163a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1164dfbe8321SBarry Smith PetscErrorCode ierr; 1165a30f8f8cSSatish Balay 1166a30f8f8cSSatish Balay PetscFunctionBegin; 1167f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1168f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1169a30f8f8cSSatish Balay PetscFunctionReturn(0); 1170a30f8f8cSSatish Balay } 1171a30f8f8cSSatish Balay 11724a2ae208SSatish Balay #undef __FUNCT__ 11734a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11741302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1175a30f8f8cSSatish Balay { 1176d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1177d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1178d0d4cfc2SHong Zhang PetscErrorCode ierr; 1179d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1180d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1181899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1182d0d4cfc2SHong Zhang 1183a30f8f8cSSatish Balay PetscFunctionBegin; 1184e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1185d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1186d0d4cfc2SHong Zhang 1187d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1188d0d4cfc2SHong Zhang /* 1189d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1190d0d4cfc2SHong Zhang */ 1191d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1192d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1193d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1194d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1195d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 119626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1197d0d4cfc2SHong Zhang } 1198dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1199d0d4cfc2SHong Zhang } 1200d0d4cfc2SHong Zhang 1201e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1202d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1203d0d4cfc2SHong Zhang 1204d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1205d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1206d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1207d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1208d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1209d0d4cfc2SHong Zhang nztot = nzA + nzB; 1210d0d4cfc2SHong Zhang 1211d0d4cfc2SHong Zhang cmap = mat->garray; 1212d0d4cfc2SHong Zhang if (v || idx) { 1213d0d4cfc2SHong Zhang if (nztot) { 1214d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1215d0d4cfc2SHong Zhang PetscInt imark = -1; 1216d0d4cfc2SHong Zhang if (v) { 1217d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1218d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1219d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1220d0d4cfc2SHong Zhang else break; 1221d0d4cfc2SHong Zhang } 1222d0d4cfc2SHong Zhang imark = i; 1223d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1224d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1225d0d4cfc2SHong Zhang } 1226d0d4cfc2SHong Zhang if (idx) { 1227d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1228d0d4cfc2SHong Zhang if (imark > -1) { 1229d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1230d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1231d0d4cfc2SHong Zhang } 1232d0d4cfc2SHong Zhang } else { 1233d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 123426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1235d0d4cfc2SHong Zhang else break; 1236d0d4cfc2SHong Zhang } 1237d0d4cfc2SHong Zhang imark = i; 1238d0d4cfc2SHong Zhang } 1239d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1240d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang } else { 1243d0d4cfc2SHong Zhang if (idx) *idx = 0; 1244d0d4cfc2SHong Zhang if (v) *v = 0; 1245d0d4cfc2SHong Zhang } 1246d0d4cfc2SHong Zhang } 1247d0d4cfc2SHong Zhang *nz = nztot; 1248d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1249d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1250a30f8f8cSSatish Balay PetscFunctionReturn(0); 1251a30f8f8cSSatish Balay } 1252a30f8f8cSSatish Balay 12534a2ae208SSatish Balay #undef __FUNCT__ 12544a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12551302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1256a30f8f8cSSatish Balay { 1257a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1258a30f8f8cSSatish Balay 1259a30f8f8cSSatish Balay PetscFunctionBegin; 1260e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1261a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1262a30f8f8cSSatish Balay PetscFunctionReturn(0); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 12654a2ae208SSatish Balay #undef __FUNCT__ 1266d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1267d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1268d0d4cfc2SHong Zhang { 1269d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1270d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1271d0d4cfc2SHong Zhang 1272d0d4cfc2SHong Zhang PetscFunctionBegin; 1273d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1274d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1275d0d4cfc2SHong Zhang } 1276d0d4cfc2SHong Zhang #undef __FUNCT__ 1277d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1278d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1279d0d4cfc2SHong Zhang { 1280d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1281d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1282d0d4cfc2SHong Zhang 1283d0d4cfc2SHong Zhang PetscFunctionBegin; 1284d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1285d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1286d0d4cfc2SHong Zhang } 1287d0d4cfc2SHong Zhang 1288d0d4cfc2SHong Zhang #undef __FUNCT__ 128999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 129099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 129199cafbc1SBarry Smith { 129299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 129399cafbc1SBarry Smith PetscErrorCode ierr; 129499cafbc1SBarry Smith 129599cafbc1SBarry Smith PetscFunctionBegin; 129699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 129799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 129899cafbc1SBarry Smith PetscFunctionReturn(0); 129999cafbc1SBarry Smith } 130099cafbc1SBarry Smith 130199cafbc1SBarry Smith #undef __FUNCT__ 130299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 130399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 130499cafbc1SBarry Smith { 130599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 130699cafbc1SBarry Smith PetscErrorCode ierr; 130799cafbc1SBarry Smith 130899cafbc1SBarry Smith PetscFunctionBegin; 130999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 131099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 131199cafbc1SBarry Smith PetscFunctionReturn(0); 131299cafbc1SBarry Smith } 131399cafbc1SBarry Smith 131436032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 131536032a97SHong Zhang Input: isrow - distributed(parallel), 131636032a97SHong Zhang iscol_local - locally owned (seq) 131736032a97SHong Zhang */ 131899cafbc1SBarry Smith #undef __FUNCT__ 131936032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 132036032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13218f46ffcaSHong Zhang { 13228f46ffcaSHong Zhang PetscErrorCode ierr; 13238f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13248f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 132536032a97SHong Zhang 132636032a97SHong Zhang PetscFunctionBegin; 13278f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13288f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13291098a8e8SHong Zhang if (sz1 > sz2) { 13301098a8e8SHong Zhang *flg = PETSC_FALSE; 13311098a8e8SHong Zhang PetscFunctionReturn(0); 13321098a8e8SHong Zhang } 13338f46ffcaSHong Zhang 13348f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13358f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13368f46ffcaSHong Zhang 13378f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13388f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 13398f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 13408f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 13418f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13428f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13438f46ffcaSHong Zhang 13448f46ffcaSHong Zhang nmatch=0; 13458f46ffcaSHong Zhang k = 0; 13468f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13478f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13488f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13498f46ffcaSHong Zhang k = j; nmatch++; 13508f46ffcaSHong Zhang break; 13518f46ffcaSHong Zhang } 13528f46ffcaSHong Zhang } 13538f46ffcaSHong Zhang } 13548f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13558f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13568f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 13578f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 13581098a8e8SHong Zhang if (nmatch < sz1) { 13591098a8e8SHong Zhang *flg = PETSC_FALSE; 13601098a8e8SHong Zhang } else { 13611098a8e8SHong Zhang *flg = PETSC_TRUE; 13621098a8e8SHong Zhang } 136336032a97SHong Zhang PetscFunctionReturn(0); 13648f46ffcaSHong Zhang } 136536032a97SHong Zhang 136636032a97SHong Zhang #undef __FUNCT__ 136736032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 136836032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 136936032a97SHong Zhang { 137036032a97SHong Zhang PetscErrorCode ierr; 137136032a97SHong Zhang IS iscol_local; 137236032a97SHong Zhang PetscInt csize; 137336032a97SHong Zhang PetscBool isequal; 137436032a97SHong Zhang 137536032a97SHong Zhang PetscFunctionBegin; 137636032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 137736032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 137836032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 137936032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 138036032a97SHong Zhang } else { 138136032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 138236032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 138336032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 13848f46ffcaSHong Zhang } 13858f46ffcaSHong Zhang 13868f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 138736032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 13888f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 13898f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 13908f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 13918f46ffcaSHong Zhang } 13928f46ffcaSHong Zhang PetscFunctionReturn(0); 13938f46ffcaSHong Zhang } 13948f46ffcaSHong Zhang 13958f46ffcaSHong Zhang #undef __FUNCT__ 13964a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1397dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1398a30f8f8cSSatish Balay { 1399a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1400dfbe8321SBarry Smith PetscErrorCode ierr; 1401a30f8f8cSSatish Balay 1402a30f8f8cSSatish Balay PetscFunctionBegin; 1403a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1404a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1405a30f8f8cSSatish Balay PetscFunctionReturn(0); 1406a30f8f8cSSatish Balay } 1407a30f8f8cSSatish Balay 14084a2ae208SSatish Balay #undef __FUNCT__ 14094a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1410dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1411a30f8f8cSSatish Balay { 1412a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1413a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1414dfbe8321SBarry Smith PetscErrorCode ierr; 1415a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1416a30f8f8cSSatish Balay 1417a30f8f8cSSatish Balay PetscFunctionBegin; 1418d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141926fbe8dcSKarl Rupp 1420a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 142126fbe8dcSKarl Rupp 1422a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1423a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 142426fbe8dcSKarl Rupp 1425a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 142626fbe8dcSKarl Rupp 1427a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1428a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1429a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1430a30f8f8cSSatish Balay info->nz_used = isend[0]; 1431a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1432a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1433a30f8f8cSSatish Balay info->memory = isend[3]; 1434a30f8f8cSSatish Balay info->mallocs = isend[4]; 1435a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1436*b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 143726fbe8dcSKarl Rupp 1438a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1439a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1440a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1441a30f8f8cSSatish Balay info->memory = irecv[3]; 1442a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1443a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1444*b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 144526fbe8dcSKarl Rupp 1446a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1447a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1448a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1449a30f8f8cSSatish Balay info->memory = irecv[3]; 1450a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1451f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1452a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1453a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1454a30f8f8cSSatish Balay info->factor_mallocs = 0; 1455a30f8f8cSSatish Balay PetscFunctionReturn(0); 1456a30f8f8cSSatish Balay } 1457a30f8f8cSSatish Balay 14584a2ae208SSatish Balay #undef __FUNCT__ 14594a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1460ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1461a30f8f8cSSatish Balay { 1462a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1463d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1464dfbe8321SBarry Smith PetscErrorCode ierr; 1465a30f8f8cSSatish Balay 1466a30f8f8cSSatish Balay PetscFunctionBegin; 1467e98b92d7SKris Buschelman switch (op) { 1468512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1469e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1471a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1472e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14734e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14744e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1475e98b92d7SKris Buschelman break; 1476e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 14774e0d8c25SBarry Smith a->roworiented = flg; 147826fbe8dcSKarl Rupp 14794e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14804e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1481e98b92d7SKris Buschelman break; 14824e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1483290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1484e98b92d7SKris Buschelman break; 1485e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14864e0d8c25SBarry Smith a->donotstash = flg; 1487e98b92d7SKris Buschelman break; 1488e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 14894e0d8c25SBarry Smith a->ht_flag = flg; 1490e98b92d7SKris Buschelman break; 14919a4540c5SBarry Smith case MAT_HERMITIAN: 1492e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1493eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 149426fbe8dcSKarl Rupp 1495547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1496eeffb40dSHong Zhang break; 1497ffa07934SHong Zhang case MAT_SPD: 1498ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1499ffa07934SHong Zhang A->spd = flg; 1500ffa07934SHong Zhang if (flg) { 1501ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1502ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1503ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1504ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1505ffa07934SHong Zhang } 1506ffa07934SHong Zhang break; 150777e54ba9SKris Buschelman case MAT_SYMMETRIC: 1508eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1509eeffb40dSHong Zhang break; 151077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1511eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1512eeffb40dSHong Zhang break; 15139a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1514e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1515290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 151677e54ba9SKris Buschelman break; 1517d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15184e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1519d0d4cfc2SHong Zhang break; 1520d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15214e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1522d0d4cfc2SHong Zhang break; 1523d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15244e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1525d0d4cfc2SHong Zhang break; 1526e98b92d7SKris Buschelman default: 1527e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1528a30f8f8cSSatish Balay } 1529a30f8f8cSSatish Balay PetscFunctionReturn(0); 1530a30f8f8cSSatish Balay } 1531a30f8f8cSSatish Balay 15324a2ae208SSatish Balay #undef __FUNCT__ 15338115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1534fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1535a30f8f8cSSatish Balay { 1536dfbe8321SBarry Smith PetscErrorCode ierr; 15376e111a19SKarl Rupp 1538a30f8f8cSSatish Balay PetscFunctionBegin; 1539815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1540999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1541fc4dec0aSBarry Smith } 15428115998fSBarry Smith PetscFunctionReturn(0); 1543a30f8f8cSSatish Balay } 1544a30f8f8cSSatish Balay 15454a2ae208SSatish Balay #undef __FUNCT__ 15464a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1547dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1548a30f8f8cSSatish Balay { 1549a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1550a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1551dfbe8321SBarry Smith PetscErrorCode ierr; 15525e90f9d9SHong Zhang PetscInt nv,m,n; 1553ace3abfcSBarry Smith PetscBool flg; 1554a30f8f8cSSatish Balay 1555a30f8f8cSSatish Balay PetscFunctionBegin; 1556a30f8f8cSSatish Balay if (ll != rr) { 1557b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1558e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1559a30f8f8cSSatish Balay } 1560b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1561b3bf805bSHong Zhang 15625e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1563e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1564b3bf805bSHong Zhang 15655e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1566e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15675e90f9d9SHong Zhang 1568ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15695e90f9d9SHong Zhang 15705e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 15710298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 15725e90f9d9SHong Zhang 15735e90f9d9SHong Zhang /* scale the diagonal part */ 1574a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1575a30f8f8cSSatish Balay 15765e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1577ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15780298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1579a30f8f8cSSatish Balay PetscFunctionReturn(0); 1580a30f8f8cSSatish Balay } 1581a30f8f8cSSatish Balay 15824a2ae208SSatish Balay #undef __FUNCT__ 15834a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1584dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1585a30f8f8cSSatish Balay { 1586f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1587dfbe8321SBarry Smith PetscErrorCode ierr; 1588a30f8f8cSSatish Balay 1589a30f8f8cSSatish Balay PetscFunctionBegin; 1590a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1591a30f8f8cSSatish Balay PetscFunctionReturn(0); 1592a30f8f8cSSatish Balay } 1593a30f8f8cSSatish Balay 15946849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1595a30f8f8cSSatish Balay 15964a2ae208SSatish Balay #undef __FUNCT__ 15974a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1598ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1599a30f8f8cSSatish Balay { 1600a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1601a30f8f8cSSatish Balay Mat a,b,c,d; 1602ace3abfcSBarry Smith PetscBool flg; 1603dfbe8321SBarry Smith PetscErrorCode ierr; 1604a30f8f8cSSatish Balay 1605a30f8f8cSSatish Balay PetscFunctionBegin; 1606a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1607a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1608a30f8f8cSSatish Balay 1609a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1610abc0a331SBarry Smith if (flg) { 1611a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1612a30f8f8cSSatish Balay } 1613*b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1614a30f8f8cSSatish Balay PetscFunctionReturn(0); 1615a30f8f8cSSatish Balay } 1616a30f8f8cSSatish Balay 16174a2ae208SSatish Balay #undef __FUNCT__ 16183c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 16193c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16203c896bc6SHong Zhang { 16213c896bc6SHong Zhang PetscErrorCode ierr; 16223c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16233c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16243c896bc6SHong Zhang 16253c896bc6SHong Zhang PetscFunctionBegin; 16263c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16273c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1628d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16293c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1630d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16313c896bc6SHong Zhang } else { 16323c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16333c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16343c896bc6SHong Zhang } 16353c896bc6SHong Zhang PetscFunctionReturn(0); 16363c896bc6SHong Zhang } 16373c896bc6SHong Zhang 16383c896bc6SHong Zhang #undef __FUNCT__ 16394994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 16404994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1641273d9f13SBarry Smith { 1642dfbe8321SBarry Smith PetscErrorCode ierr; 1643273d9f13SBarry Smith 1644273d9f13SBarry Smith PetscFunctionBegin; 1645535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1646273d9f13SBarry Smith PetscFunctionReturn(0); 1647273d9f13SBarry Smith } 1648a5e6ed63SBarry Smith 16494fe895cdSHong Zhang #undef __FUNCT__ 16504fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 16514fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16524fe895cdSHong Zhang { 16534fe895cdSHong Zhang PetscErrorCode ierr; 16544fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16554fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16564fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16574fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16584fe895cdSHong Zhang 16594fe895cdSHong Zhang PetscFunctionBegin; 16604fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16614fe895cdSHong Zhang PetscScalar alpha = a; 16624fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16634fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1664c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 16658b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16664fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16674fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1668c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 16698b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1670a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1671ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1672ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1673ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1674ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 16754fe895cdSHong Zhang } else { 16764de5dceeSHong Zhang Mat B; 16774de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 16784de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1679d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 16804de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 16814de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 16824de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 16834de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 16844de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 16854de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 16864de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 16874de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 16884de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 16894de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 16904de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 16914de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 169228be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 16934de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 16944de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1695d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 16964de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 16974fe895cdSHong Zhang } 16984fe895cdSHong Zhang PetscFunctionReturn(0); 16994fe895cdSHong Zhang } 17004fe895cdSHong Zhang 1701a5e6ed63SBarry Smith #undef __FUNCT__ 1702a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 17031302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1704a5e6ed63SBarry Smith { 17056849ba73SBarry Smith PetscErrorCode ierr; 17061302d50aSBarry Smith PetscInt i; 170768906dc2SToby Isaac PetscBool flg,sorted; 1708a5e6ed63SBarry Smith 17096849ba73SBarry Smith PetscFunctionBegin; 171068906dc2SToby Isaac for (i = 0; i < n; i++) { 171168906dc2SToby Isaac ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr); 171268906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i); 171368906dc2SToby Isaac ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr); 171468906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i); 171568906dc2SToby Isaac } 17164dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1717a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1718a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 17194dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 17204dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1721a5e6ed63SBarry Smith } 17224dcd73b1SHong Zhang } 1723a5e6ed63SBarry Smith PetscFunctionReturn(0); 1724a5e6ed63SBarry Smith } 1725a5e6ed63SBarry Smith 17267d68702bSBarry Smith #undef __FUNCT__ 17277d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ" 17287d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17297d68702bSBarry Smith { 17307d68702bSBarry Smith PetscErrorCode ierr; 17317d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17326f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17337d68702bSBarry Smith 17347d68702bSBarry Smith PetscFunctionBegin; 17356f33a894SBarry Smith if (!Y->preallocated) { 17367d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17376f33a894SBarry Smith } else if (!aij->nz) { 1738b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17396f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1740b83222d8SBarry Smith aij->nonew = nonew; 17417d68702bSBarry Smith } 17427d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17437d68702bSBarry Smith PetscFunctionReturn(0); 17447d68702bSBarry Smith } 17457d68702bSBarry Smith 1746a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17473964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1748a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1749a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1750a9d4b620SHong Zhang MatMult_MPISBAIJ, 175197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1752431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1753431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1754a30f8f8cSSatish Balay 0, 1755a30f8f8cSSatish Balay 0, 1756a30f8f8cSSatish Balay 0, 175797304618SKris Buschelman /* 10*/ 0, 1758a30f8f8cSSatish Balay 0, 1759a30f8f8cSSatish Balay 0, 176041f059aeSBarry Smith MatSOR_MPISBAIJ, 1761a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 176297304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1763a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1764a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1765a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1766a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 176797304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1768a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1769a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1770a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1771d519adbfSMatthew Knepley /* 24*/ 0, 1772a30f8f8cSSatish Balay 0, 1773a30f8f8cSSatish Balay 0, 1774a30f8f8cSSatish Balay 0, 1775a30f8f8cSSatish Balay 0, 17764994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1777b5df2d14SHong Zhang 0, 1778a30f8f8cSSatish Balay 0, 1779a30f8f8cSSatish Balay 0, 1780a30f8f8cSSatish Balay 0, 1781d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1782a30f8f8cSSatish Balay 0, 1783a30f8f8cSSatish Balay 0, 1784a30f8f8cSSatish Balay 0, 1785a30f8f8cSSatish Balay 0, 1786d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1787a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1788d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1789a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 17903c896bc6SHong Zhang MatCopy_MPISBAIJ, 1791d519adbfSMatthew Knepley /* 44*/ 0, 1792a30f8f8cSSatish Balay MatScale_MPISBAIJ, 17937d68702bSBarry Smith MatShift_MPISBAIJ, 1794a30f8f8cSSatish Balay 0, 1795a30f8f8cSSatish Balay 0, 1796f73d5cc4SBarry Smith /* 49*/ 0, 1797a30f8f8cSSatish Balay 0, 1798a30f8f8cSSatish Balay 0, 1799a30f8f8cSSatish Balay 0, 1800a30f8f8cSSatish Balay 0, 1801d519adbfSMatthew Knepley /* 54*/ 0, 1802a30f8f8cSSatish Balay 0, 1803a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1804a30f8f8cSSatish Balay 0, 1805a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18068f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1807a30f8f8cSSatish Balay 0, 1808a30f8f8cSSatish Balay 0, 1809357abbc8SBarry Smith 0, 181024d5174aSHong Zhang 0, 1811d519adbfSMatthew Knepley /* 64*/ 0, 181224d5174aSHong Zhang 0, 181324d5174aSHong Zhang 0, 181424d5174aSHong Zhang 0, 181524d5174aSHong Zhang 0, 1816d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 181724d5174aSHong Zhang 0, 181897304618SKris Buschelman 0, 181997304618SKris Buschelman 0, 182097304618SKris Buschelman 0, 1821d519adbfSMatthew Knepley /* 74*/ 0, 182297304618SKris Buschelman 0, 182397304618SKris Buschelman 0, 182497304618SKris Buschelman 0, 182597304618SKris Buschelman 0, 1826d519adbfSMatthew Knepley /* 79*/ 0, 182797304618SKris Buschelman 0, 182897304618SKris Buschelman 0, 182997304618SKris Buschelman 0, 18305bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1831d519adbfSMatthew Knepley /* 84*/ 0, 1832865e5f61SKris Buschelman 0, 1833865e5f61SKris Buschelman 0, 1834865e5f61SKris Buschelman 0, 1835865e5f61SKris Buschelman 0, 1836d519adbfSMatthew Knepley /* 89*/ 0, 1837865e5f61SKris Buschelman 0, 1838865e5f61SKris Buschelman 0, 1839865e5f61SKris Buschelman 0, 1840865e5f61SKris Buschelman 0, 1841d519adbfSMatthew Knepley /* 94*/ 0, 1842865e5f61SKris Buschelman 0, 1843865e5f61SKris Buschelman 0, 184499cafbc1SBarry Smith 0, 184599cafbc1SBarry Smith 0, 1846d519adbfSMatthew Knepley /* 99*/ 0, 184799cafbc1SBarry Smith 0, 184899cafbc1SBarry Smith 0, 184999cafbc1SBarry Smith 0, 185099cafbc1SBarry Smith 0, 1851d519adbfSMatthew Knepley /*104*/ 0, 185299cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1853d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1854d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 185595936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 185695936485SShri Abhyankar /*109*/ 0, 185795936485SShri Abhyankar 0, 185895936485SShri Abhyankar 0, 185995936485SShri Abhyankar 0, 186095936485SShri Abhyankar 0, 186195936485SShri Abhyankar /*114*/ 0, 186295936485SShri Abhyankar 0, 186395936485SShri Abhyankar 0, 186495936485SShri Abhyankar 0, 186595936485SShri Abhyankar 0, 186695936485SShri Abhyankar /*119*/ 0, 186795936485SShri Abhyankar 0, 186895936485SShri Abhyankar 0, 18693964eb88SJed Brown 0, 18703964eb88SJed Brown 0, 18713964eb88SJed Brown /*124*/ 0, 18723964eb88SJed Brown 0, 18733964eb88SJed Brown 0, 18743964eb88SJed Brown 0, 18753964eb88SJed Brown 0, 18763964eb88SJed Brown /*129*/ 0, 18773964eb88SJed Brown 0, 18783964eb88SJed Brown 0, 18793964eb88SJed Brown 0, 18803964eb88SJed Brown 0, 18813964eb88SJed Brown /*134*/ 0, 18823964eb88SJed Brown 0, 18833964eb88SJed Brown 0, 18843964eb88SJed Brown 0, 18853964eb88SJed Brown 0, 18863964eb88SJed Brown /*139*/ 0, 1887f9426fe0SMark Adams 0, 188859f5e6ceSHong Zhang 0, 188959f5e6ceSHong Zhang 0, 189059f5e6ceSHong Zhang 0, 189159f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 189299cafbc1SBarry Smith }; 1893a30f8f8cSSatish Balay 18944a2ae208SSatish Balay #undef __FUNCT__ 18954a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 189611bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1897a30f8f8cSSatish Balay { 1898a30f8f8cSSatish Balay PetscFunctionBegin; 1899a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1900a30f8f8cSSatish Balay PetscFunctionReturn(0); 1901a30f8f8cSSatish Balay } 1902a30f8f8cSSatish Balay 19034a2ae208SSatish Balay #undef __FUNCT__ 1904a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1905b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1906a23d5eceSKris Buschelman { 1907a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1908dfbe8321SBarry Smith PetscErrorCode ierr; 1909535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1910a23d5eceSKris Buschelman 1911a23d5eceSKris Buschelman PetscFunctionBegin; 191233d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 191326283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 191426283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1915e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1916899cda47SBarry Smith 1917a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1918d0f46423SBarry Smith mbs = B->rmap->n/bs; 1919d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1920c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1921a23d5eceSKris Buschelman 1922d0f46423SBarry Smith B->rmap->bs = bs; 1923a23d5eceSKris Buschelman b->bs2 = bs*bs; 1924a23d5eceSKris Buschelman b->mbs = mbs; 1925a23d5eceSKris Buschelman b->Mbs = Mbs; 1926de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1927de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1928a23d5eceSKris Buschelman 1929a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1930d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1931a23d5eceSKris Buschelman } 1932d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1933d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1934a23d5eceSKris Buschelman 1935d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1936d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1937a23d5eceSKris Buschelman 1938526dfc15SBarry Smith if (!B->preallocated) { 1939f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1940d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 19419c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 19423bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1943f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1944d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 19454aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 19463bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1947ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1948526dfc15SBarry Smith } 1949a23d5eceSKris Buschelman 1950526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1951526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 195226fbe8dcSKarl Rupp 1953526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1954a23d5eceSKris Buschelman PetscFunctionReturn(0); 1955a23d5eceSKris Buschelman } 1956a23d5eceSKris Buschelman 1957dfb205c3SBarry Smith #undef __FUNCT__ 1958dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1959dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1960dfb205c3SBarry Smith { 1961dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1962dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1963dfb205c3SBarry Smith const PetscInt *JJ =0; 1964dfb205c3SBarry Smith PetscScalar *values=0; 1965dfb205c3SBarry Smith PetscErrorCode ierr; 1966dfb205c3SBarry Smith 1967dfb205c3SBarry Smith PetscFunctionBegin; 1968ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1969dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1970dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1971dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1972dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1973e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1974dfb205c3SBarry Smith m = B->rmap->n/bs; 1975dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1976dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1977dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1978dfb205c3SBarry Smith 1979dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1980dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1981dfb205c3SBarry Smith for (i=0; i<m; i++) { 1982dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1983dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1984dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1985dfb205c3SBarry Smith JJ = jj + ii[i]; 1986dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1987dfb205c3SBarry Smith if (*JJ >= cstart) break; 1988dfb205c3SBarry Smith JJ++; 1989dfb205c3SBarry Smith } 1990dfb205c3SBarry Smith d = 0; 1991dfb205c3SBarry Smith for (; j<nz; j++) { 1992dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1993dfb205c3SBarry Smith d++; 1994dfb205c3SBarry Smith } 1995dfb205c3SBarry Smith d_nnz[i] = d; 1996dfb205c3SBarry Smith o_nnz[i] = nz - d; 1997dfb205c3SBarry Smith } 1998dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1999dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2000dfb205c3SBarry Smith 2001dfb205c3SBarry Smith values = (PetscScalar*)V; 2002dfb205c3SBarry Smith if (!values) { 2003785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2004dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2005dfb205c3SBarry Smith } 2006dfb205c3SBarry Smith for (i=0; i<m; i++) { 2007dfb205c3SBarry Smith PetscInt row = i + rstart; 2008dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2009dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2010dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2011dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2012dfb205c3SBarry Smith } 2013dfb205c3SBarry Smith 2014dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2015dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2016dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20177827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2018dfb205c3SBarry Smith PetscFunctionReturn(0); 2019dfb205c3SBarry Smith } 2020dfb205c3SBarry Smith 20210bad9183SKris Buschelman /*MC 2022fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2023828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2024828413b8SBarry Smith the matrix is stored. 2025828413b8SBarry Smith 2026828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2027828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20280bad9183SKris Buschelman 20290bad9183SKris Buschelman Options Database Keys: 20300bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20310bad9183SKris Buschelman 20320bad9183SKris Buschelman Level: beginner 20330bad9183SKris Buschelman 20340bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 20350bad9183SKris Buschelman M*/ 20360bad9183SKris Buschelman 20378cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2038aa5a9175SDahai Guo 2039a23d5eceSKris Buschelman #undef __FUNCT__ 20404a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 20418cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2042b5df2d14SHong Zhang { 2043b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2044dfbe8321SBarry Smith PetscErrorCode ierr; 204594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2046b5df2d14SHong Zhang 2047b5df2d14SHong Zhang PetscFunctionBegin; 2048b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2049b0a32e0cSBarry Smith B->data = (void*)b; 2050b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2051b5df2d14SHong Zhang 2052b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2053b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2054b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2055b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 205626fbe8dcSKarl Rupp 2057ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2058ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2059b5df2d14SHong Zhang 2060b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2061854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2062b5df2d14SHong Zhang 2063b5df2d14SHong Zhang /* build cache for off array entries formed */ 2064ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 206526fbe8dcSKarl Rupp 2066b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20670298fd71SBarry Smith b->colmap = NULL; 20680298fd71SBarry Smith b->garray = NULL; 2069b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2070b5df2d14SHong Zhang 2071b5df2d14SHong Zhang /* stuff used in block assembly */ 2072b5df2d14SHong Zhang b->barray = 0; 2073b5df2d14SHong Zhang 2074b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2075b5df2d14SHong Zhang b->lvec = 0; 2076b5df2d14SHong Zhang b->Mvctx = 0; 207740781036SHong Zhang b->slvec0 = 0; 207840781036SHong Zhang b->slvec0b = 0; 207940781036SHong Zhang b->slvec1 = 0; 208040781036SHong Zhang b->slvec1a = 0; 208140781036SHong Zhang b->slvec1b = 0; 208240781036SHong Zhang b->sMvctx = 0; 2083b5df2d14SHong Zhang 2084b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2085b5df2d14SHong Zhang b->rowindices = 0; 2086b5df2d14SHong Zhang b->rowvalues = 0; 2087b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2088b5df2d14SHong Zhang 2089b5df2d14SHong Zhang /* hash table stuff */ 2090b5df2d14SHong Zhang b->ht = 0; 2091b5df2d14SHong Zhang b->hd = 0; 2092b5df2d14SHong Zhang b->ht_size = 0; 2093b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2094b5df2d14SHong Zhang b->ht_fact = 0; 2095b5df2d14SHong Zhang b->ht_total_ct = 0; 2096b5df2d14SHong Zhang b->ht_insert_ct = 0; 2097b5df2d14SHong Zhang 20987a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 20997a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21007a868f3eSHong Zhang 210159ffdab8SBarry Smith b->in_loc = 0; 210259ffdab8SBarry Smith b->v_loc = 0; 210359ffdab8SBarry Smith b->n_loc = 0; 210494ae4db5SBarry Smith 2105bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2106bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2107bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 2108bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2109bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 2110bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 21116214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21126214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21136214f412SHong Zhang #endif 2114aa5a9175SDahai Guo 211523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 211623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 211723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 211823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 211926fbe8dcSKarl Rupp 212017667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 212194ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 212294ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 212394ae4db5SBarry Smith if (flg) { 212494ae4db5SBarry Smith PetscReal fact = 1.39; 212594ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 212694ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 212794ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 212894ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 212994ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 213094ae4db5SBarry Smith } 213194ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2132b5df2d14SHong Zhang PetscFunctionReturn(0); 2133b5df2d14SHong Zhang } 2134b5df2d14SHong Zhang 2135209238afSKris Buschelman /*MC 2136002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2137209238afSKris Buschelman 2138209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2139209238afSKris Buschelman and MATMPISBAIJ otherwise. 2140209238afSKris Buschelman 2141209238afSKris Buschelman Options Database Keys: 2142209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2143209238afSKris Buschelman 2144209238afSKris Buschelman Level: beginner 2145209238afSKris Buschelman 2146209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2147209238afSKris Buschelman M*/ 2148209238afSKris Buschelman 21494a2ae208SSatish Balay #undef __FUNCT__ 21504a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 2151b5df2d14SHong Zhang /*@C 2152b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2153b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2154b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2155b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2156b5df2d14SHong Zhang 2157b5df2d14SHong Zhang Collective on Mat 2158b5df2d14SHong Zhang 2159b5df2d14SHong Zhang Input Parameters: 21601c4f3114SJed Brown + B - the matrix 2161bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2162bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2163b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2164b5df2d14SHong Zhang submatrix (same for all local rows) 2165b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 21666d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 21670298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 216895742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2169b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2170b5df2d14SHong Zhang submatrix (same for all local rows). 2171b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2172c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 21730298fd71SBarry Smith (possibly different for each block row) or NULL. 2174b5df2d14SHong Zhang 2175b5df2d14SHong Zhang 2176b5df2d14SHong Zhang Options Database Keys: 2177b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2178b5df2d14SHong Zhang block calculations (much slower) 2179b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2180b5df2d14SHong Zhang 2181b5df2d14SHong Zhang Notes: 2182b5df2d14SHong Zhang 2183b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2184b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2185b5df2d14SHong Zhang 218649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 218749a6f317SBarry Smith 2188b5df2d14SHong Zhang Storage Information: 2189b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2190b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2191b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2192b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2193b5df2d14SHong Zhang 2194b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2195b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 21960298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2197b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2198b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2199b5df2d14SHong Zhang 2200aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2201aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2202aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2203aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2204aa95bbe8SBarry Smith 2205b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2206b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2207b5df2d14SHong Zhang 2208b5df2d14SHong Zhang .vb 2209b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2210a4b1a0f6SJed Brown -------------------------- 2211c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2212c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2213c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2214a4b1a0f6SJed Brown -------------------------- 2215b5df2d14SHong Zhang .ve 2216b5df2d14SHong Zhang 2217b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2218b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22196d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22206d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2221b5df2d14SHong Zhang 22226d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22236d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2224c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2225c2fc9fa9SBarry Smith 2226b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2227b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2228b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2229b5df2d14SHong Zhang matrices. 2230b5df2d14SHong Zhang 2231b5df2d14SHong Zhang Level: intermediate 2232b5df2d14SHong Zhang 2233b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2234b5df2d14SHong Zhang 2235ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2236b5df2d14SHong Zhang @*/ 22377087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2238b5df2d14SHong Zhang { 22394ac538c5SBarry Smith PetscErrorCode ierr; 2240b5df2d14SHong Zhang 2241b5df2d14SHong Zhang PetscFunctionBegin; 22426ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22436ba663aaSJed Brown PetscValidType(B,1); 22446ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 22454ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2246b5df2d14SHong Zhang PetscFunctionReturn(0); 2247b5df2d14SHong Zhang } 2248b5df2d14SHong Zhang 22494a2ae208SSatish Balay #undef __FUNCT__ 225069b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2251a30f8f8cSSatish Balay /*@C 225269b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2253a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2254a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2255a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2256a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2257a30f8f8cSSatish Balay 2258a30f8f8cSSatish Balay Collective on MPI_Comm 2259a30f8f8cSSatish Balay 2260a30f8f8cSSatish Balay Input Parameters: 2261a30f8f8cSSatish Balay + comm - MPI communicator 2262bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2263bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2264a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2265a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2266a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2267a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2268a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2269a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2270a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2271a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2272a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2273a30f8f8cSSatish Balay submatrix (same for all local rows) 2274a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 22756d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 22760298fd71SBarry Smith (possibly different for each block block row) or NULL. 227795742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 227895742e49SBarry Smith set its value even if it is zero. 2279a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2280a30f8f8cSSatish Balay submatrix (same for all local rows). 2281a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2282a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 22830298fd71SBarry Smith each block row) or NULL. 2284a30f8f8cSSatish Balay 2285a30f8f8cSSatish Balay Output Parameter: 2286a30f8f8cSSatish Balay . A - the matrix 2287a30f8f8cSSatish Balay 2288a30f8f8cSSatish Balay Options Database Keys: 2289a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2290a30f8f8cSSatish Balay block calculations (much slower) 2291a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2292a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2293a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2294a30f8f8cSSatish Balay 2295175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2296ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2297175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2298175b88e8SBarry Smith 2299a30f8f8cSSatish Balay Notes: 2300d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23016d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2302d1be2dadSMatthew Knepley 2303a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2304a30f8f8cSSatish Balay (possibly both). 2305a30f8f8cSSatish Balay 2306a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2307a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2308a30f8f8cSSatish Balay 230949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 231049a6f317SBarry Smith 2311a30f8f8cSSatish Balay Storage Information: 2312a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2313a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2314a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2315a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2316a30f8f8cSSatish Balay 2317a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2318a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23190298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2320a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2321a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2322a30f8f8cSSatish Balay 2323a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2324a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2325a30f8f8cSSatish Balay 2326a30f8f8cSSatish Balay .vb 2327a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2328a4b1a0f6SJed Brown -------------------------- 2329c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2330c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2331c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2332a4b1a0f6SJed Brown -------------------------- 2333a30f8f8cSSatish Balay .ve 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2336a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23376d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23386d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2339a30f8f8cSSatish Balay 23406d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23416d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2342a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2343a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2344a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2345a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2346a30f8f8cSSatish Balay matrices. 2347a30f8f8cSSatish Balay 2348a30f8f8cSSatish Balay Level: intermediate 2349a30f8f8cSSatish Balay 2350a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2351a30f8f8cSSatish Balay 235269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2353a30f8f8cSSatish Balay @*/ 2354a30f8f8cSSatish Balay 235569b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2356a30f8f8cSSatish Balay { 23576849ba73SBarry Smith PetscErrorCode ierr; 23581302d50aSBarry Smith PetscMPIInt size; 2359a30f8f8cSSatish Balay 2360a30f8f8cSSatish Balay PetscFunctionBegin; 2361f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2362f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2363273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2364273d9f13SBarry Smith if (size > 1) { 2365b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2366b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2367273d9f13SBarry Smith } else { 2368273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2369273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2370273d9f13SBarry Smith } 2371a30f8f8cSSatish Balay PetscFunctionReturn(0); 2372a30f8f8cSSatish Balay } 2373a30f8f8cSSatish Balay 2374a30f8f8cSSatish Balay 23754a2ae208SSatish Balay #undef __FUNCT__ 23764a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 23776849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2378a30f8f8cSSatish Balay { 2379a30f8f8cSSatish Balay Mat mat; 2380a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2381dfbe8321SBarry Smith PetscErrorCode ierr; 2382d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2383387bc808SHong Zhang PetscScalar *array; 2384a30f8f8cSSatish Balay 2385a30f8f8cSSatish Balay PetscFunctionBegin; 2386a30f8f8cSSatish Balay *newmat = 0; 238726fbe8dcSKarl Rupp 2388ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2389d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 23907adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 23911d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 23921e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 23931e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2394e1b6402fSHong Zhang 2395d5f3da31SBarry Smith mat->factortype = matin->factortype; 2396273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 239782327fa8SHong Zhang mat->assembled = PETSC_TRUE; 23987fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 23997fff6886SHong Zhang 2400b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2401a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2402a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2403a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2404a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2405a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2406a30f8f8cSSatish Balay 2407899cda47SBarry Smith 2408a30f8f8cSSatish Balay a->size = oldmat->size; 2409a30f8f8cSSatish Balay a->rank = oldmat->rank; 2410a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2411a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2412a30f8f8cSSatish Balay a->rowindices = 0; 2413a30f8f8cSSatish Balay a->rowvalues = 0; 2414a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2415a30f8f8cSSatish Balay a->barray = 0; 2416899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2417899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2418899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2419899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2420a30f8f8cSSatish Balay 2421a30f8f8cSSatish Balay /* hash table stuff */ 2422a30f8f8cSSatish Balay a->ht = 0; 2423a30f8f8cSSatish Balay a->hd = 0; 2424a30f8f8cSSatish Balay a->ht_size = 0; 2425a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2426a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2427a30f8f8cSSatish Balay a->ht_total_ct = 0; 2428a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2429a30f8f8cSSatish Balay 2430899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2431a30f8f8cSSatish Balay if (oldmat->colmap) { 2432a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2433a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2434a30f8f8cSSatish Balay #else 2435854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 24363bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 24371302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2438a30f8f8cSSatish Balay #endif 2439a30f8f8cSSatish Balay } else a->colmap = 0; 2440387bc808SHong Zhang 2441a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2442785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 24433bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 24441302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2445a30f8f8cSSatish Balay } else a->garray = 0; 2446a30f8f8cSSatish Balay 2447ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2448a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 24493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2450a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 24513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 245282327fa8SHong Zhang 245382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 24543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 245582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 24563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2457387bc808SHong Zhang 2458387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 24591ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2460778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2461778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 24621ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 24631ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2464778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 24651ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 24663bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 24673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 24683bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 24693bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 24703bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2471387bc808SHong Zhang 2472387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2473387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2474387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 24753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 247682327fa8SHong Zhang 2477a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 24783bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2479a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 24803bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2481140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2482a30f8f8cSSatish Balay *newmat = mat; 2483a30f8f8cSSatish Balay PetscFunctionReturn(0); 2484a30f8f8cSSatish Balay } 2485a30f8f8cSSatish Balay 24864a2ae208SSatish Balay #undef __FUNCT__ 24875bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2488112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 248995936485SShri Abhyankar { 249095936485SShri Abhyankar PetscErrorCode ierr; 249195936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 249295936485SShri Abhyankar PetscScalar *vals,*buf; 2493ce94432eSBarry Smith MPI_Comm comm; 249495936485SShri Abhyankar MPI_Status status; 2495adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2496adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 249795936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 24983059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 249995936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2500461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 250195936485SShri Abhyankar int fd; 250295936485SShri Abhyankar 250395936485SShri Abhyankar PetscFunctionBegin; 2504c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2505c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2506ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 25070298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 25080298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 250995936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 25103059b6faSBarry Smith if (bs < 0) bs = 1; 251195936485SShri Abhyankar 251295936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 251395936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 251495936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 25155872f025SBarry Smith if (!rank) { 251695936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 251795936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 251895936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 251995936485SShri Abhyankar } 252095936485SShri Abhyankar 252195936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 252226fbe8dcSKarl Rupp M = header[1]; 252326fbe8dcSKarl Rupp N = header[2]; 252495936485SShri Abhyankar 252595936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2526461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2527461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 252895936485SShri Abhyankar 252995936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 253095936485SShri Abhyankar 253195936485SShri Abhyankar /* 253295936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 253395936485SShri Abhyankar divisible by the blocksize 253495936485SShri Abhyankar */ 253595936485SShri Abhyankar Mbs = M/bs; 253695936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 253795936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 253895936485SShri Abhyankar else Mbs++; 253995936485SShri Abhyankar if (extra_rows &&!rank) { 254095936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 254195936485SShri Abhyankar } 254295936485SShri Abhyankar 254395936485SShri Abhyankar /* determine ownership of all rows */ 254495936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 254595936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 254695936485SShri Abhyankar m = mbs*bs; 254795936485SShri Abhyankar } else { /* User Set */ 254895936485SShri Abhyankar m = newmat->rmap->n; 254995936485SShri Abhyankar mbs = m/bs; 255095936485SShri Abhyankar } 2551dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 25524dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 255395936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 255495936485SShri Abhyankar rowners[0] = 0; 255595936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 255695936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 255795936485SShri Abhyankar rstart = rowners[rank]; 255895936485SShri Abhyankar rend = rowners[rank+1]; 255995936485SShri Abhyankar 256095936485SShri Abhyankar /* distribute row lengths to all processors */ 2561785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 256295936485SShri Abhyankar if (!rank) { 2563854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 256495936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 256595936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2566785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 256795936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 256895936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 256995936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 257095936485SShri Abhyankar } else { 257195936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 257295936485SShri Abhyankar } 257395936485SShri Abhyankar 257495936485SShri Abhyankar if (!rank) { /* procs[0] */ 257595936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2576785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 257795936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 257895936485SShri Abhyankar for (i=0; i<size; i++) { 257995936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 258095936485SShri Abhyankar procsnz[i] += rowlengths[j]; 258195936485SShri Abhyankar } 258295936485SShri Abhyankar } 258395936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 258495936485SShri Abhyankar 258595936485SShri Abhyankar /* determine max buffer needed and allocate it */ 258695936485SShri Abhyankar maxnz = 0; 258795936485SShri Abhyankar for (i=0; i<size; i++) { 258895936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 258995936485SShri Abhyankar } 2590785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 259195936485SShri Abhyankar 259295936485SShri Abhyankar /* read in my part of the matrix column indices */ 259395936485SShri Abhyankar nz = procsnz[0]; 2594785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 259595936485SShri Abhyankar mycols = ibuf; 259695936485SShri Abhyankar if (size == 1) nz -= extra_rows; 259795936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 259826fbe8dcSKarl Rupp if (size == 1) { 259926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 260026fbe8dcSKarl Rupp } 260195936485SShri Abhyankar 260295936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 260395936485SShri Abhyankar for (i=1; i<size-1; i++) { 260495936485SShri Abhyankar nz = procsnz[i]; 260595936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 260695936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 260795936485SShri Abhyankar } 260895936485SShri Abhyankar /* read in the stuff for the last proc */ 260995936485SShri Abhyankar if (size != 1) { 261095936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 261195936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 261295936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 261395936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 261495936485SShri Abhyankar } 261595936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 261695936485SShri Abhyankar } else { /* procs[i], i>0 */ 261795936485SShri Abhyankar /* determine buffer space needed for message */ 261895936485SShri Abhyankar nz = 0; 261926fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2620785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 262195936485SShri Abhyankar mycols = ibuf; 262295936485SShri Abhyankar /* receive message of column indices*/ 262395936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 262495936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 262595936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 262695936485SShri Abhyankar } 262795936485SShri Abhyankar 262895936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2629dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2630dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 263195936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263295936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263395936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263495936485SShri Abhyankar rowcount = 0; 263595936485SShri Abhyankar nzcount = 0; 263695936485SShri Abhyankar for (i=0; i<mbs; i++) { 263795936485SShri Abhyankar dcount = 0; 263895936485SShri Abhyankar odcount = 0; 263995936485SShri Abhyankar for (j=0; j<bs; j++) { 264095936485SShri Abhyankar kmax = locrowlens[rowcount]; 264195936485SShri Abhyankar for (k=0; k<kmax; k++) { 264295936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 264395936485SShri Abhyankar if (!mask[tmp]) { 264495936485SShri Abhyankar mask[tmp] = 1; 264595936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 264695936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 264795936485SShri Abhyankar } 264895936485SShri Abhyankar } 264995936485SShri Abhyankar rowcount++; 265095936485SShri Abhyankar } 265195936485SShri Abhyankar 265295936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 265395936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 265495936485SShri Abhyankar 265595936485SShri Abhyankar /* zero out the mask elements we set */ 265695936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 265795936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 265895936485SShri Abhyankar } 265995936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 266095936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 26616816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 266295936485SShri Abhyankar 266395936485SShri Abhyankar if (!rank) { 2664785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 266595936485SShri Abhyankar /* read in my part of the matrix numerical values */ 266695936485SShri Abhyankar nz = procsnz[0]; 266795936485SShri Abhyankar vals = buf; 266895936485SShri Abhyankar mycols = ibuf; 266995936485SShri Abhyankar if (size == 1) nz -= extra_rows; 267095936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 267126fbe8dcSKarl Rupp if (size == 1) { 267226fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 267326fbe8dcSKarl Rupp } 267495936485SShri Abhyankar 267595936485SShri Abhyankar /* insert into matrix */ 267695936485SShri Abhyankar jj = rstart*bs; 267795936485SShri Abhyankar for (i=0; i<m; i++) { 267895936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 267995936485SShri Abhyankar mycols += locrowlens[i]; 268095936485SShri Abhyankar vals += locrowlens[i]; 268195936485SShri Abhyankar jj++; 268295936485SShri Abhyankar } 268395936485SShri Abhyankar 268495936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 268595936485SShri Abhyankar for (i=1; i<size-1; i++) { 268695936485SShri Abhyankar nz = procsnz[i]; 268795936485SShri Abhyankar vals = buf; 268895936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 268995936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 269095936485SShri Abhyankar } 269195936485SShri Abhyankar /* the last proc */ 269295936485SShri Abhyankar if (size != 1) { 269395936485SShri Abhyankar nz = procsnz[i] - extra_rows; 269495936485SShri Abhyankar vals = buf; 269595936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 269695936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 269795936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 269895936485SShri Abhyankar } 269995936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 270095936485SShri Abhyankar 270195936485SShri Abhyankar } else { 270295936485SShri Abhyankar /* receive numeric values */ 2703785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 270495936485SShri Abhyankar 270595936485SShri Abhyankar /* receive message of values*/ 270695936485SShri Abhyankar vals = buf; 270795936485SShri Abhyankar mycols = ibuf; 270895936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 270995936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 271095936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 271195936485SShri Abhyankar 271295936485SShri Abhyankar /* insert into matrix */ 271395936485SShri Abhyankar jj = rstart*bs; 271495936485SShri Abhyankar for (i=0; i<m; i++) { 271595936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 271695936485SShri Abhyankar mycols += locrowlens[i]; 271795936485SShri Abhyankar vals += locrowlens[i]; 271895936485SShri Abhyankar jj++; 271995936485SShri Abhyankar } 272095936485SShri Abhyankar } 272195936485SShri Abhyankar 272295936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 272395936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 272495936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 272595936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 272695936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 272795936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 272895936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 272995936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 273095936485SShri Abhyankar PetscFunctionReturn(0); 273195936485SShri Abhyankar } 273295936485SShri Abhyankar 273395936485SShri Abhyankar #undef __FUNCT__ 27344a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2735dcf5cc72SBarry Smith /*XXXXX@ 2736a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2737a30f8f8cSSatish Balay 2738a30f8f8cSSatish Balay Input Parameters: 2739a30f8f8cSSatish Balay . mat - the matrix 2740a30f8f8cSSatish Balay . fact - factor 2741a30f8f8cSSatish Balay 2742c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2743a30f8f8cSSatish Balay 2744a30f8f8cSSatish Balay Level: advanced 2745a30f8f8cSSatish Balay 2746a30f8f8cSSatish Balay Notes: 2747a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2748a30f8f8cSSatish Balay 2749a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2750a30f8f8cSSatish Balay 2751a30f8f8cSSatish Balay .seealso: MatSetOption() 2752dcf5cc72SBarry Smith @XXXXX*/ 2753dcf5cc72SBarry Smith 275424d5174aSHong Zhang 27554a2ae208SSatish Balay #undef __FUNCT__ 2756985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2757985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 275824d5174aSHong Zhang { 275924d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2760f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2761ca54ac64SHong Zhang PetscReal atmp; 276287828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2763dfbe8321SBarry Smith PetscErrorCode ierr; 27641302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 27651302d50aSBarry Smith PetscMPIInt rank,size; 27661302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 276787828ca2SBarry Smith PetscScalar *va; 27688a1c53f2SBarry Smith MatScalar *ba; 2769f4c0e9e4SHong Zhang MPI_Status stat; 277024d5174aSHong Zhang 277124d5174aSHong Zhang PetscFunctionBegin; 2772e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 27730298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 27741ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2775f4c0e9e4SHong Zhang 2776ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2777ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2778f4c0e9e4SHong Zhang 2779d0f46423SBarry Smith bs = A->rmap->bs; 2780f4c0e9e4SHong Zhang mbs = a->mbs; 2781f4c0e9e4SHong Zhang Mbs = a->Mbs; 2782f4c0e9e4SHong Zhang ba = b->a; 2783f4c0e9e4SHong Zhang bi = b->i; 2784f4c0e9e4SHong Zhang bj = b->j; 2785f4c0e9e4SHong Zhang 2786f4c0e9e4SHong Zhang /* find ownerships */ 2787d0f46423SBarry Smith rowners_bs = A->rmap->range; 2788f4c0e9e4SHong Zhang 2789f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2790785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2791ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2792f4c0e9e4SHong Zhang 2793f4c0e9e4SHong Zhang /* row_max for B */ 2794b8475685SHong Zhang if (rank != size-1) { 2795f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2796f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2797f4c0e9e4SHong Zhang brow = bs*i; 2798f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2799f4c0e9e4SHong Zhang bcol = bs*(*bj); 2800f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2801ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 280204d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2803f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2804f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2805ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2806ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2807f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2808f4c0e9e4SHong Zhang } 2809f4c0e9e4SHong Zhang } 2810f4c0e9e4SHong Zhang bj++; 2811f4c0e9e4SHong Zhang } 2812f4c0e9e4SHong Zhang } 2813f4c0e9e4SHong Zhang 2814f4c0e9e4SHong Zhang /* send values to its owners */ 2815f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2816f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2817ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2818ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2819ca54ac64SHong Zhang } 2820f4c0e9e4SHong Zhang } 2821f4c0e9e4SHong Zhang 2822f4c0e9e4SHong Zhang /* receive values */ 2823ca54ac64SHong Zhang if (rank) { 2824f4c0e9e4SHong Zhang rvalues = work; 2825ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2826f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2827ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2828f4c0e9e4SHong Zhang /* process values */ 2829f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2830ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2831f4c0e9e4SHong Zhang } 2832f4c0e9e4SHong Zhang } 2833ca54ac64SHong Zhang } 2834f4c0e9e4SHong Zhang 28351ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2836ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 283724d5174aSHong Zhang PetscFunctionReturn(0); 283824d5174aSHong Zhang } 28392798e883SHong Zhang 28402798e883SHong Zhang #undef __FUNCT__ 284141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 284241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 28432798e883SHong Zhang { 28442798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2845dfbe8321SBarry Smith PetscErrorCode ierr; 2846d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 28473649974fSBarry Smith PetscScalar *x,*ptr,*from; 2848ffe4fb16SHong Zhang Vec bb1; 28493649974fSBarry Smith const PetscScalar *b; 2850ffe4fb16SHong Zhang 2851ffe4fb16SHong Zhang PetscFunctionBegin; 2852e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2853e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2854ffe4fb16SHong Zhang 2855a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 285641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2857a2b30743SBarry Smith PetscFunctionReturn(0); 2858a2b30743SBarry Smith } 2859a2b30743SBarry Smith 2860ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2861ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 286241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2863ffe4fb16SHong Zhang its--; 2864ffe4fb16SHong Zhang } 2865ffe4fb16SHong Zhang 2866ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2867ffe4fb16SHong Zhang while (its--) { 2868ffe4fb16SHong Zhang 2869ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2870ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2871ffe4fb16SHong Zhang 2872ffe4fb16SHong Zhang /* copy xx into slvec0a */ 28731ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 28741ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2875ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 28761ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2877ffe4fb16SHong Zhang 2878efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2879ffe4fb16SHong Zhang 2880ffe4fb16SHong Zhang /* copy bb into slvec1a */ 28811ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 28823649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2883ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 28841ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2885ffe4fb16SHong Zhang 2886ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2887fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2888ffe4fb16SHong Zhang 2889ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 28901ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2891a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2892ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2893ffe4fb16SHong Zhang 2894ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2895ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2896ffe4fb16SHong Zhang 2897ffe4fb16SHong Zhang /* local diagonal sweep */ 289841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2899ffe4fb16SHong Zhang } 29006bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2901fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 290241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2903fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 290441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2905fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2906fa22f6d0SBarry Smith Vec xx1; 2907ace3abfcSBarry Smith PetscBool hasop; 290820f1ed55SBarry Smith const PetscScalar *diag; 2909887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 291020f1ed55SBarry Smith PetscInt i,n; 2911fa22f6d0SBarry Smith 2912fa22f6d0SBarry Smith if (!mat->xx1) { 2913fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2914fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2915fa22f6d0SBarry Smith } 2916fa22f6d0SBarry Smith xx1 = mat->xx1; 2917fa22f6d0SBarry Smith bb1 = mat->bb1; 2918fa22f6d0SBarry Smith 291941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2920fa22f6d0SBarry Smith 2921fa22f6d0SBarry Smith if (!mat->diag) { 2922effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 29232a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2924fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2925fa22f6d0SBarry Smith } 2926fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2927fa22f6d0SBarry Smith 2928fa22f6d0SBarry Smith if (hasop) { 2929fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2930887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 293120f1ed55SBarry Smith } else { 293220f1ed55SBarry Smith /* 293320f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 293420f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2935887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 293620f1ed55SBarry Smith */ 293720f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29383649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29393649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 294020f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 294120f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2942887ee2caSBarry Smith if (omega == 1.0) { 294326fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 294420f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2945887ee2caSBarry Smith } else { 294626fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2947887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2948887ee2caSBarry Smith } 294920f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29503649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29513649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 295220f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 295320f1ed55SBarry Smith } 2954fa22f6d0SBarry Smith 2955fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2956fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2957fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2958fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2959fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2960fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2961fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2962fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2963fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2964fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2965effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2966fa22f6d0SBarry Smith 2967fa22f6d0SBarry Smith /* local sweep */ 296841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2969fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2970f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2971ffe4fb16SHong Zhang PetscFunctionReturn(0); 2972ffe4fb16SHong Zhang } 2973ffe4fb16SHong Zhang 2974ffe4fb16SHong Zhang #undef __FUNCT__ 297541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 297641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2977ffe4fb16SHong Zhang { 2978ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2979dfbe8321SBarry Smith PetscErrorCode ierr; 29802798e883SHong Zhang Vec lvec1,bb1; 29812798e883SHong Zhang 29822798e883SHong Zhang PetscFunctionBegin; 2983e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2984e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 29852798e883SHong Zhang 2986c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 29872798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 298841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 29892798e883SHong Zhang its--; 29902798e883SHong Zhang } 29912798e883SHong Zhang 29922798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 29932798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 29942798e883SHong Zhang while (its--) { 2995ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 29962798e883SHong Zhang 29972798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 29982798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2999efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 30002798e883SHong Zhang 3001ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30022798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3003ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30042798e883SHong Zhang 30052798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3006efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 30072798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 30082798e883SHong Zhang 3009ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30102798e883SHong Zhang 3011c14dc6b6SHong Zhang /* diagonal sweep */ 301241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 30132798e883SHong Zhang } 30146bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 30156bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 30166bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 30172798e883SHong Zhang PetscFunctionReturn(0); 30182798e883SHong Zhang } 30192798e883SHong Zhang 3020dfb205c3SBarry Smith #undef __FUNCT__ 3021dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 3022dfb205c3SBarry Smith /*@ 3023dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3024dfb205c3SBarry Smith CSR format the local rows. 3025dfb205c3SBarry Smith 3026dfb205c3SBarry Smith Collective on MPI_Comm 3027dfb205c3SBarry Smith 3028dfb205c3SBarry Smith Input Parameters: 3029dfb205c3SBarry Smith + comm - MPI communicator 3030dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3031dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3032dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3033dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3034dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3035dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3036dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3037dfb205c3SBarry Smith . i - row indices 3038dfb205c3SBarry Smith . j - column indices 3039dfb205c3SBarry Smith - a - matrix values 3040dfb205c3SBarry Smith 3041dfb205c3SBarry Smith Output Parameter: 3042dfb205c3SBarry Smith . mat - the matrix 3043dfb205c3SBarry Smith 3044dfb205c3SBarry Smith Level: intermediate 3045dfb205c3SBarry Smith 3046dfb205c3SBarry Smith Notes: 3047dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3048dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3049dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3050dfb205c3SBarry Smith 3051dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3052dfb205c3SBarry Smith 3053dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3054dfb205c3SBarry Smith 3055dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 305669b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3057dfb205c3SBarry Smith @*/ 30587087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3059dfb205c3SBarry Smith { 3060dfb205c3SBarry Smith PetscErrorCode ierr; 3061dfb205c3SBarry Smith 3062dfb205c3SBarry Smith 3063dfb205c3SBarry Smith PetscFunctionBegin; 3064f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3065dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3066dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3067dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3068dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3069dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3070dfb205c3SBarry Smith PetscFunctionReturn(0); 3071dfb205c3SBarry Smith } 3072dfb205c3SBarry Smith 3073dfb205c3SBarry Smith 3074dfb205c3SBarry Smith #undef __FUNCT__ 3075dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 3076dfb205c3SBarry Smith /*@C 3077dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3078dfb205c3SBarry Smith (the default parallel PETSc format). 3079dfb205c3SBarry Smith 3080dfb205c3SBarry Smith Collective on MPI_Comm 3081dfb205c3SBarry Smith 3082dfb205c3SBarry Smith Input Parameters: 30831c4f3114SJed Brown + B - the matrix 3084dfb205c3SBarry Smith . bs - the block size 3085dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3086dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3087dfb205c3SBarry Smith - v - optional values in the matrix 3088dfb205c3SBarry Smith 3089dfb205c3SBarry Smith Level: developer 3090dfb205c3SBarry Smith 3091dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3092dfb205c3SBarry Smith 309369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3094dfb205c3SBarry Smith @*/ 30957087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3096dfb205c3SBarry Smith { 30974ac538c5SBarry Smith PetscErrorCode ierr; 3098dfb205c3SBarry Smith 3099dfb205c3SBarry Smith PetscFunctionBegin; 31004ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3101dfb205c3SBarry Smith PetscFunctionReturn(0); 3102dfb205c3SBarry Smith } 3103dfb205c3SBarry Smith 3104de4b53ebSHong Zhang #undef __FUNCT__ 310510c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 310610c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 31074dcd73b1SHong Zhang { 31084dcd73b1SHong Zhang PetscErrorCode ierr; 310910c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 311010c56fdeSHong Zhang PetscInt *indx; 311110c56fdeSHong Zhang PetscScalar *values; 3112dfb205c3SBarry Smith 31134dcd73b1SHong Zhang PetscFunctionBegin; 31144dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 311510c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 311610c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 311710c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 311810c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 31194dcd73b1SHong Zhang 312010c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 312110c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 312210c56fdeSHong Zhang if (n == PETSC_DECIDE) { 312310c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 312410c56fdeSHong Zhang } 312510c56fdeSHong Zhang /* Check sum(n) = Nbs */ 3126*b2566f29SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 312710c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 312810c56fdeSHong Zhang 312910c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 313010c56fdeSHong Zhang rstart -= mbs; 31314dcd73b1SHong Zhang 31324dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 313310c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3134e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 313510c56fdeSHong Zhang for (i=0; i<mbs; i++) { 31364dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 31374dcd73b1SHong Zhang nnz = nnz/bs; 31384dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 31394dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 31404dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 31414dcd73b1SHong Zhang } 3142e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 31434dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 31444dcd73b1SHong Zhang 31454dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 314610c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 31474dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 31484dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 31494dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 31504dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 31514dcd73b1SHong Zhang } 31524dcd73b1SHong Zhang 315310c56fdeSHong Zhang /* numeric phase */ 31544dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 315510c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 31564dcd73b1SHong Zhang 3157e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 31584dcd73b1SHong Zhang for (i=0; i<m; i++) { 31594dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31604dcd73b1SHong Zhang Ii = i + rstart; 316110c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 31624dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31634dcd73b1SHong Zhang } 3164e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 316510c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 316610c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31674dcd73b1SHong Zhang PetscFunctionReturn(0); 31684dcd73b1SHong Zhang } 3169