xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision b3bf805bc5fa6ada2d57fa222e3d33ae005e5770)
1a30f8f8cSSatish Balay 
2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
3a30f8f8cSSatish Balay #include "mpisbaij.h"
4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
5a30f8f8cSSatish Balay 
6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
10177431f27SBarry Smith       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102a30f8f8cSSatish Balay       if (nrow >= rmax) { \
103a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1041302d50aSBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
105a30f8f8cSSatish Balay         MatScalar *new_a; \
106a30f8f8cSSatish Balay  \
10777431f27SBarry Smith         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
108a30f8f8cSSatish Balay  \
109a30f8f8cSSatish Balay         /* malloc new storage space */ \
1101302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \
11182502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1121302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
113a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
114a30f8f8cSSatish Balay  \
115a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
116a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
117a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
1181302d50aSBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
119a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
1201302d50aSBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
121a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
12287828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
124a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
125a30f8f8cSSatish Balay         /* free up old matrix storage */ \
126a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
127a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
128a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
129a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
130a30f8f8cSSatish Balay         } \
131a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
132a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
133a30f8f8cSSatish Balay  \
134a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
135a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
1361302d50aSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \
1376c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE; \
138a30f8f8cSSatish Balay         a->reallocs++; \
1396c6c5352SBarry Smith         a->nz++; \
140a30f8f8cSSatish Balay       } \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       a_noinsert:; \
151a30f8f8cSSatish Balay     ailen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
154a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
155a30f8f8cSSatish Balay { \
156a30f8f8cSSatish Balay     brow = row/bs;  \
157a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
158a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
159a30f8f8cSSatish Balay       bcol = col/bs; \
160a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
161a30f8f8cSSatish Balay       low = 0; high = nrow; \
162a30f8f8cSSatish Balay       while (high-low > 3) { \
163a30f8f8cSSatish Balay         t = (low+high)/2; \
164a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
165a30f8f8cSSatish Balay         else              low  = t; \
166a30f8f8cSSatish Balay       } \
167a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
168a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
169a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
170a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
171a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
172a30f8f8cSSatish Balay           else                    *bap  = value;  \
173a30f8f8cSSatish Balay           goto b_noinsert; \
174a30f8f8cSSatish Balay         } \
175a30f8f8cSSatish Balay       } \
176a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
17777431f27SBarry Smith       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
178a30f8f8cSSatish Balay       if (nrow >= rmax) { \
179a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1801302d50aSBarry Smith         PetscInt  new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
181a30f8f8cSSatish Balay         MatScalar *new_a; \
182a30f8f8cSSatish Balay  \
18377431f27SBarry Smith         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
184a30f8f8cSSatish Balay  \
185a30f8f8cSSatish Balay         /* malloc new storage space */ \
1861302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \
18782502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1881302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
189a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
190a30f8f8cSSatish Balay  \
191a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
192a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
193a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
1941302d50aSBarry Smith         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
195a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
1961302d50aSBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
197a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
198a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
199a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
200a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
201a30f8f8cSSatish Balay         /* free up old matrix storage */ \
202a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
203a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
204a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
205a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
206a30f8f8cSSatish Balay         } \
207a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
208a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
209a30f8f8cSSatish Balay  \
210a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
211a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
2121302d50aSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \
213a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
214a30f8f8cSSatish Balay         b->reallocs++; \
215a30f8f8cSSatish Balay         b->nz++; \
216a30f8f8cSSatish Balay       } \
217a30f8f8cSSatish Balay       N = nrow++ - 1;  \
218a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
219a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
220a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
221a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
222a30f8f8cSSatish Balay       } \
223a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
224a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
225a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
226a30f8f8cSSatish Balay       b_noinsert:; \
227a30f8f8cSSatish Balay     bilen[brow] = nrow; \
228a30f8f8cSSatish Balay }
229a30f8f8cSSatish Balay #endif
230a30f8f8cSSatish Balay 
231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2324a2ae208SSatish Balay #undef __FUNCT__
2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
235a30f8f8cSSatish Balay {
236a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
237dfbe8321SBarry Smith   PetscErrorCode ierr;
2381302d50aSBarry Smith   PetscInt       i,N = m*n;
239a30f8f8cSSatish Balay   MatScalar      *vsingle;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   PetscFunctionBegin;
242a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
243a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
24482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
245a30f8f8cSSatish Balay     b->setvalueslen  = N;
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
248a30f8f8cSSatish Balay 
249a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
250a30f8f8cSSatish Balay     vsingle[i] = v[i];
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
254a30f8f8cSSatish Balay }
255a30f8f8cSSatish Balay 
2564a2ae208SSatish Balay #undef __FUNCT__
2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
259a30f8f8cSSatish Balay {
260a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
261dfbe8321SBarry Smith   PetscErrorCode ierr;
2621302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
263a30f8f8cSSatish Balay   MatScalar      *vsingle;
264a30f8f8cSSatish Balay 
265a30f8f8cSSatish Balay   PetscFunctionBegin;
266a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
267a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
26882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
269a30f8f8cSSatish Balay     b->setvalueslen  = N;
270a30f8f8cSSatish Balay   }
271a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
272a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
273a30f8f8cSSatish Balay     vsingle[i] = v[i];
274a30f8f8cSSatish Balay   }
275a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
276a30f8f8cSSatish Balay   PetscFunctionReturn(0);
277a30f8f8cSSatish Balay }
278a30f8f8cSSatish Balay #endif
279a30f8f8cSSatish Balay 
280a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
281a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
282a30f8f8cSSatish Balay */
2834a2ae208SSatish Balay #undef __FUNCT__
284e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
2851302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
286a30f8f8cSSatish Balay {
287a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
288a30f8f8cSSatish Balay   MatScalar      value;
289b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
290dfbe8321SBarry Smith   PetscErrorCode ierr;
2911302d50aSBarry Smith   PetscInt       i,j,row,col;
2921302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
2931302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
294521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
295a30f8f8cSSatish Balay 
296a30f8f8cSSatish Balay   /* Some Variables required in the macro */
297a30f8f8cSSatish Balay   Mat            A = baij->A;
298a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2991302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
300a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   Mat            B = baij->B;
303a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
3041302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
305a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
306a30f8f8cSSatish Balay 
3071302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
3081302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
309a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   /* for stash */
3121302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
313f65c83cfSHong Zhang   MatScalar     *v_loc=0;
314a30f8f8cSSatish Balay 
315a30f8f8cSSatish Balay   PetscFunctionBegin;
316a30f8f8cSSatish Balay 
317a30f8f8cSSatish Balay   if(!baij->donotstash){
3181302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
31982502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
320a30f8f8cSSatish Balay   }
321a30f8f8cSSatish Balay 
322a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
323a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
32577431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
326a30f8f8cSSatish Balay #endif
327a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
328a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
329a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
330f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
331a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
332a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
333a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
334a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
335a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
336a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
337a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
338a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
34077431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
341a30f8f8cSSatish Balay #endif
342a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
343a30f8f8cSSatish Balay           if (mat->was_assembled) {
344a30f8f8cSSatish Balay             if (!baij->colmap) {
345653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
346a30f8f8cSSatish Balay             }
347a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
348a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
34971730473SSatish Balay             col  = col - 1;
350a30f8f8cSSatish Balay #else
35171730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
352a30f8f8cSSatish Balay #endif
353a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
354a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
355a30f8f8cSSatish Balay               col =  in[j];
356a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
357a30f8f8cSSatish Balay               B = baij->B;
358a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
359a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
360a30f8f8cSSatish Balay               ba=b->a;
36171730473SSatish Balay             } else col += in[j]%bs;
362a30f8f8cSSatish Balay           } else col = in[j];
363a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
364a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
365a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
366a30f8f8cSSatish Balay         }
367a30f8f8cSSatish Balay       }
368a30f8f8cSSatish Balay     } else {  /* off processor entry */
369a30f8f8cSSatish Balay       if (!baij->donotstash) {
370a30f8f8cSSatish Balay         n_loc = 0;
371a30f8f8cSSatish Balay         for (j=0; j<n; j++){
372f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
373a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
374a30f8f8cSSatish Balay           if (roworiented) {
375a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
376a30f8f8cSSatish Balay           } else {
377a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
378a30f8f8cSSatish Balay           }
379a30f8f8cSSatish Balay           n_loc++;
380a30f8f8cSSatish Balay         }
381a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
382a30f8f8cSSatish Balay       }
383a30f8f8cSSatish Balay     }
384a30f8f8cSSatish Balay   }
385a30f8f8cSSatish Balay 
386a30f8f8cSSatish Balay   if(!baij->donotstash){
387a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
388a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
389a30f8f8cSSatish Balay   }
390a30f8f8cSSatish Balay   PetscFunctionReturn(0);
391a30f8f8cSSatish Balay }
392a30f8f8cSSatish Balay 
3934a2ae208SSatish Balay #undef __FUNCT__
394e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
396a30f8f8cSSatish Balay {
3970880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
398f15d580aSBarry Smith   const MatScalar *value;
399f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4000880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
401dfbe8321SBarry Smith   PetscErrorCode  ierr;
4021302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
4031302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
404521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
4050880e062SHong Zhang 
406a30f8f8cSSatish Balay   PetscFunctionBegin;
4070880e062SHong Zhang   if(!barray) {
4080880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4090880e062SHong Zhang     baij->barray = barray;
4100880e062SHong Zhang   }
4110880e062SHong Zhang 
4120880e062SHong Zhang   if (roworiented) {
4130880e062SHong Zhang     stepval = (n-1)*bs;
4140880e062SHong Zhang   } else {
4150880e062SHong Zhang     stepval = (m-1)*bs;
4160880e062SHong Zhang   }
4170880e062SHong Zhang   for (i=0; i<m; i++) {
4180880e062SHong Zhang     if (im[i] < 0) continue;
4192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
42077431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
4210880e062SHong Zhang #endif
4220880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4230880e062SHong Zhang       row = im[i] - rstart;
4240880e062SHong Zhang       for (j=0; j<n; j++) {
4250880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4260880e062SHong Zhang         if ((roworiented) && (n == 1)) {
427f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4280880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
429f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4300880e062SHong Zhang         } else { /* Here a copy is required */
4310880e062SHong Zhang           if (roworiented) {
4320880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4330880e062SHong Zhang           } else {
4340880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4350880e062SHong Zhang           }
4360880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4370880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4380880e062SHong Zhang               *barray++  = *value++;
4390880e062SHong Zhang             }
4400880e062SHong Zhang           }
4410880e062SHong Zhang           barray -=bs2;
4420880e062SHong Zhang         }
4430880e062SHong Zhang 
4440880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4450880e062SHong Zhang           col  = in[j] - cstart;
4460880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4470880e062SHong Zhang         }
4480880e062SHong Zhang         else if (in[j] < 0) continue;
4492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
45077431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
4510880e062SHong Zhang #endif
4520880e062SHong Zhang         else {
4530880e062SHong Zhang           if (mat->was_assembled) {
4540880e062SHong Zhang             if (!baij->colmap) {
455653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
4560880e062SHong Zhang             }
4570880e062SHong Zhang 
4582515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
4590880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4601302d50aSBarry Smith             { PetscInt data;
4610880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4620880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4630880e062SHong Zhang             }
4640880e062SHong Zhang #else
4650880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4660880e062SHong Zhang #endif
4670880e062SHong Zhang #endif
4680880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4690880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4700880e062SHong Zhang             col  = (col - 1)/bs;
4710880e062SHong Zhang #else
4720880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4730880e062SHong Zhang #endif
4740880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4750880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4760880e062SHong Zhang               col =  in[j];
4770880e062SHong Zhang             }
4780880e062SHong Zhang           }
4790880e062SHong Zhang           else col = in[j];
480e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4810880e062SHong Zhang         }
4820880e062SHong Zhang       }
4830880e062SHong Zhang     } else {
4840880e062SHong Zhang       if (!baij->donotstash) {
4850880e062SHong Zhang         if (roworiented) {
4860880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4870880e062SHong Zhang         } else {
4880880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4890880e062SHong Zhang         }
4900880e062SHong Zhang       }
4910880e062SHong Zhang     }
4920880e062SHong Zhang   }
4930880e062SHong Zhang   PetscFunctionReturn(0);
494a30f8f8cSSatish Balay }
495a30f8f8cSSatish Balay 
4964a2ae208SSatish Balay #undef __FUNCT__
4974a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4981302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
499a30f8f8cSSatish Balay {
500f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5016849ba73SBarry Smith   PetscErrorCode ierr;
502521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
5031302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
504a30f8f8cSSatish Balay 
505a30f8f8cSSatish Balay   PetscFunctionBegin;
506a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
50777431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
50877431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
509a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
510a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
511a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
51277431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
51377431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
514a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
515a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
516c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
517a30f8f8cSSatish Balay         } else {
518a30f8f8cSSatish Balay           if (!baij->colmap) {
519653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
520a30f8f8cSSatish Balay           }
521a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
522a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
523a30f8f8cSSatish Balay           data --;
524a30f8f8cSSatish Balay #else
525a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
526a30f8f8cSSatish Balay #endif
527a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
528a30f8f8cSSatish Balay           else {
529a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
530e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
531a30f8f8cSSatish Balay           }
532a30f8f8cSSatish Balay         }
533a30f8f8cSSatish Balay       }
534a30f8f8cSSatish Balay     } else {
53529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
536a30f8f8cSSatish Balay     }
537a30f8f8cSSatish Balay   }
538a30f8f8cSSatish Balay  PetscFunctionReturn(0);
539a30f8f8cSSatish Balay }
540a30f8f8cSSatish Balay 
5414a2ae208SSatish Balay #undef __FUNCT__
5424a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
543dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
544a30f8f8cSSatish Balay {
545a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
546dfbe8321SBarry Smith   PetscErrorCode ierr;
547a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
548a30f8f8cSSatish Balay 
549a30f8f8cSSatish Balay   PetscFunctionBegin;
550a30f8f8cSSatish Balay   if (baij->size == 1) {
551a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
552a30f8f8cSSatish Balay   } else {
553a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
554f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
556a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
557a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
558a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
559d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
560a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
561a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
562a30f8f8cSSatish Balay     } else {
56329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
564a30f8f8cSSatish Balay     }
565a30f8f8cSSatish Balay   }
566a30f8f8cSSatish Balay   PetscFunctionReturn(0);
567a30f8f8cSSatish Balay }
568a30f8f8cSSatish Balay 
5694a2ae208SSatish Balay #undef __FUNCT__
5704a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
571dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
572a30f8f8cSSatish Balay {
573a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
574dfbe8321SBarry Smith   PetscErrorCode ierr;
5751302d50aSBarry Smith   PetscInt       nstash,reallocs;
576a30f8f8cSSatish Balay   InsertMode     addv;
577a30f8f8cSSatish Balay 
578a30f8f8cSSatish Balay   PetscFunctionBegin;
579a30f8f8cSSatish Balay   if (baij->donotstash) {
580a30f8f8cSSatish Balay     PetscFunctionReturn(0);
581a30f8f8cSSatish Balay   }
582a30f8f8cSSatish Balay 
583a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
584a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
585a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
58629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
589a30f8f8cSSatish Balay 
590a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
591a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
592a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
59377431f27SBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);
594a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
59577431f27SBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);
596a30f8f8cSSatish Balay   PetscFunctionReturn(0);
597a30f8f8cSSatish Balay }
598a30f8f8cSSatish Balay 
5994a2ae208SSatish Balay #undef __FUNCT__
6004a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
601dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
602a30f8f8cSSatish Balay {
603a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
604a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
605a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
6066849ba73SBarry Smith   PetscErrorCode ierr;
60713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
6081302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
60913f74950SBarry Smith   PetscMPIInt    n;
610a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
611a30f8f8cSSatish Balay   MatScalar      *val;
612a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
613a30f8f8cSSatish Balay 
614a30f8f8cSSatish Balay   PetscFunctionBegin;
615a30f8f8cSSatish Balay 
616a30f8f8cSSatish Balay   if (!baij->donotstash) {
617a30f8f8cSSatish Balay     while (1) {
618a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
619a30f8f8cSSatish Balay       if (!flg) break;
620a30f8f8cSSatish Balay 
621a30f8f8cSSatish Balay       for (i=0; i<n;) {
622a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
623a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
624a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
625a30f8f8cSSatish Balay         else       ncols = n-i;
626a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
627a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
628a30f8f8cSSatish Balay         i = j;
629a30f8f8cSSatish Balay       }
630a30f8f8cSSatish Balay     }
631a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
632a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
633a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
634a30f8f8cSSatish Balay        restore the original flags */
635a30f8f8cSSatish Balay     r1 = baij->roworiented;
636a30f8f8cSSatish Balay     r2 = a->roworiented;
637a30f8f8cSSatish Balay     r3 = b->roworiented;
638a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
639a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
640a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
641a30f8f8cSSatish Balay     while (1) {
642a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
643a30f8f8cSSatish Balay       if (!flg) break;
644a30f8f8cSSatish Balay 
645a30f8f8cSSatish Balay       for (i=0; i<n;) {
646a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
647a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
648a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
649a30f8f8cSSatish Balay         else       ncols = n-i;
650a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
651a30f8f8cSSatish Balay         i = j;
652a30f8f8cSSatish Balay       }
653a30f8f8cSSatish Balay     }
654a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
655a30f8f8cSSatish Balay     baij->roworiented = r1;
656a30f8f8cSSatish Balay     a->roworiented    = r2;
657a30f8f8cSSatish Balay     b->roworiented    = r3;
658a30f8f8cSSatish Balay   }
659a30f8f8cSSatish Balay 
660a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
661a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
662a30f8f8cSSatish Balay 
663a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
664a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
665a30f8f8cSSatish Balay   /*
666a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
667a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
668a30f8f8cSSatish Balay   */
669a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
670a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
671a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
672c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
673a30f8f8cSSatish Balay     }
674a30f8f8cSSatish Balay   }
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
67740781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
678a30f8f8cSSatish Balay   }
6794eb6d288SHong Zhang   b->compressedrow.use = PETSC_TRUE;
680a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
681a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
682a30f8f8cSSatish Balay 
683a30f8f8cSSatish Balay   if (baij->rowvalues) {
684a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
685a30f8f8cSSatish Balay     baij->rowvalues = 0;
686a30f8f8cSSatish Balay   }
6875222a1afSHong Zhang 
688a30f8f8cSSatish Balay   PetscFunctionReturn(0);
689a30f8f8cSSatish Balay }
690a30f8f8cSSatish Balay 
6914a2ae208SSatish Balay #undef __FUNCT__
6924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
694a30f8f8cSSatish Balay {
695a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
696dfbe8321SBarry Smith   PetscErrorCode    ierr;
697521d7252SBarry Smith   PetscInt          bs = mat->bs;
6981302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
69932077d6dSBarry Smith   PetscTruth        iascii,isdraw;
700b0a32e0cSBarry Smith   PetscViewer       sviewer;
701f3ef73ceSBarry Smith   PetscViewerFormat format;
702a30f8f8cSSatish Balay 
703a30f8f8cSSatish Balay   PetscFunctionBegin;
70432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
705fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
70632077d6dSBarry Smith   if (iascii) {
707b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
708456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
709a30f8f8cSSatish Balay       MatInfo info;
710a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
711a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
71277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
71377431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
714521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
715a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
71677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
717a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
71877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
719b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
720a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
721a30f8f8cSSatish Balay       PetscFunctionReturn(0);
722fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
72377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
724a30f8f8cSSatish Balay       PetscFunctionReturn(0);
725a30f8f8cSSatish Balay     }
726a30f8f8cSSatish Balay   }
727a30f8f8cSSatish Balay 
728a30f8f8cSSatish Balay   if (isdraw) {
729b0a32e0cSBarry Smith     PetscDraw       draw;
730a30f8f8cSSatish Balay     PetscTruth isnull;
731b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
732b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
733a30f8f8cSSatish Balay   }
734a30f8f8cSSatish Balay 
735a30f8f8cSSatish Balay   if (size == 1) {
736e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
737a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
738a30f8f8cSSatish Balay   } else {
739a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
740a30f8f8cSSatish Balay     Mat         A;
74165d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
74265d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
7431302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
744a30f8f8cSSatish Balay     MatScalar   *a;
745a30f8f8cSSatish Balay 
746f204ca49SKris Buschelman     /* Should this be the same type as mat? */
747a30f8f8cSSatish Balay     if (!rank) {
748f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
749a30f8f8cSSatish Balay     } else {
750f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
751a30f8f8cSSatish Balay     }
752f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
753521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
754b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
755a30f8f8cSSatish Balay 
756a30f8f8cSSatish Balay     /* copy over the A part */
75765d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
758a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7591302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
760a30f8f8cSSatish Balay 
761a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
762a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
763a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
764a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
765a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
766a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
767a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
768a30f8f8cSSatish Balay           col++; a += bs;
769a30f8f8cSSatish Balay         }
770a30f8f8cSSatish Balay       }
771a30f8f8cSSatish Balay     }
772a30f8f8cSSatish Balay     /* copy over the B part */
77365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
77465d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
775a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
776a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
777a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
778a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
779a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
780a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
781a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
782a30f8f8cSSatish Balay           col++; a += bs;
783a30f8f8cSSatish Balay         }
784a30f8f8cSSatish Balay       }
785a30f8f8cSSatish Balay     }
786a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
787a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
788a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
789a30f8f8cSSatish Balay     /*
790a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
791b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
792a30f8f8cSSatish Balay     */
793b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
79465d70643SHong Zhang     if (!rank) {
795e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
796a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
797a30f8f8cSSatish Balay     }
798b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
799a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
800a30f8f8cSSatish Balay   }
801a30f8f8cSSatish Balay   PetscFunctionReturn(0);
802a30f8f8cSSatish Balay }
803a30f8f8cSSatish Balay 
8044a2ae208SSatish Balay #undef __FUNCT__
8054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
806dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
807a30f8f8cSSatish Balay {
808dfbe8321SBarry Smith   PetscErrorCode ierr;
80932077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
810a30f8f8cSSatish Balay 
811a30f8f8cSSatish Balay   PetscFunctionBegin;
81232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
813fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
814b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
815fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
81632077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
817a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
818a30f8f8cSSatish Balay   } else {
8191302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
820a30f8f8cSSatish Balay   }
821a30f8f8cSSatish Balay   PetscFunctionReturn(0);
822a30f8f8cSSatish Balay }
823a30f8f8cSSatish Balay 
8244a2ae208SSatish Balay #undef __FUNCT__
8254a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
826dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
827a30f8f8cSSatish Balay {
828a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
829dfbe8321SBarry Smith   PetscErrorCode ierr;
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   PetscFunctionBegin;
832a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
83377431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
834a30f8f8cSSatish Balay #endif
835a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
836a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
837a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
838a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
839a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
840a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
841a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
842a30f8f8cSSatish Balay #else
843a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
844a30f8f8cSSatish Balay #endif
845a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
846a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
847a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
84840781036SHong Zhang   if (baij->slvec0) {
84940781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
85040781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
85140781036SHong Zhang   }
85240781036SHong Zhang   if (baij->slvec1) {
85340781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
85440781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
85540781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
85640781036SHong Zhang   }
85740781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
858a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
859a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
860a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
861a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
862a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
863a30f8f8cSSatish Balay #endif
864a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
865901853e0SKris Buschelman 
866901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
867901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
868901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
869901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
870a30f8f8cSSatish Balay   PetscFunctionReturn(0);
871a30f8f8cSSatish Balay }
872a30f8f8cSSatish Balay 
8734a2ae208SSatish Balay #undef __FUNCT__
874a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
875dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
876a9d4b620SHong Zhang {
877a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
878dfbe8321SBarry Smith   PetscErrorCode ierr;
879521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
880a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
881a9d4b620SHong Zhang 
882a9d4b620SHong Zhang   PetscFunctionBegin;
883a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
884a9d4b620SHong Zhang   if (nt != A->n) {
885a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
886a9d4b620SHong Zhang   }
887a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
888a9d4b620SHong Zhang   if (nt != A->m) {
889a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
890a9d4b620SHong Zhang   }
891a9d4b620SHong Zhang 
892a9d4b620SHong Zhang   /* diagonal part */
893a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
894a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
895a9d4b620SHong Zhang 
896a9d4b620SHong Zhang   /* subdiagonal part */
897a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
898a9d4b620SHong Zhang 
899a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9001ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9011ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
902a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9031ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
904a9d4b620SHong Zhang 
905a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9061ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
907a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
908a9d4b620SHong Zhang 
909a9d4b620SHong Zhang   /* supperdiagonal part */
910a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
911a9d4b620SHong Zhang 
912a9d4b620SHong Zhang   PetscFunctionReturn(0);
913a9d4b620SHong Zhang }
914a9d4b620SHong Zhang 
915a9d4b620SHong Zhang #undef __FUNCT__
91640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
917dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
918a30f8f8cSSatish Balay {
919a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
920dfbe8321SBarry Smith   PetscErrorCode ierr;
9211302d50aSBarry Smith   PetscInt       nt;
922a30f8f8cSSatish Balay 
923a30f8f8cSSatish Balay   PetscFunctionBegin;
924a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
925b5df2d14SHong Zhang   if (nt != A->n) {
92629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
927a30f8f8cSSatish Balay   }
928a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
929b5df2d14SHong Zhang   if (nt != A->m) {
93029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
931a30f8f8cSSatish Balay   }
93265d70643SHong Zhang 
933b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
934b941877fSHong Zhang   /* do diagonal part */
935b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
936b941877fSHong Zhang   /* do supperdiagonal part */
937b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
938b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
939b941877fSHong Zhang   /* do subdiagonal part */
940b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
941b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
942b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
94365d70643SHong Zhang 
944a30f8f8cSSatish Balay   PetscFunctionReturn(0);
945a30f8f8cSSatish Balay }
946a30f8f8cSSatish Balay 
9474a2ae208SSatish Balay #undef __FUNCT__
9484a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
949dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
950a30f8f8cSSatish Balay {
951de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
952dfbe8321SBarry Smith   PetscErrorCode ierr;
953521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
954a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
955a9d4b620SHong Zhang 
956a9d4b620SHong Zhang   PetscFunctionBegin;
957a9d4b620SHong Zhang   /*
95856faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
95956faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
960a9d4b620SHong Zhang   */
961a9d4b620SHong Zhang   /* diagonal part */
962a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
963a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
964a9d4b620SHong Zhang 
965a9d4b620SHong Zhang   /* subdiagonal part */
966a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
967a9d4b620SHong Zhang 
968a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9691ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9701ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
971a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9721ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
973a9d4b620SHong Zhang 
974a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9751ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
976a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
977a9d4b620SHong Zhang 
978a9d4b620SHong Zhang   /* supperdiagonal part */
979a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
980a9d4b620SHong Zhang 
981a9d4b620SHong Zhang   PetscFunctionReturn(0);
982a9d4b620SHong Zhang }
983a9d4b620SHong Zhang 
984a9d4b620SHong Zhang #undef __FUNCT__
985a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
986dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
987a9d4b620SHong Zhang {
988a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
989dfbe8321SBarry Smith   PetscErrorCode ierr;
990a30f8f8cSSatish Balay 
991a30f8f8cSSatish Balay   PetscFunctionBegin;
992b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
993b941877fSHong Zhang   /* do diagonal part */
994b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
995b941877fSHong Zhang   /* do supperdiagonal part */
996b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
997de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
998de8b6608SHong Zhang 
999b941877fSHong Zhang   /* do subdiagonal part */
1000a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1001a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1002a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1003aa482183SHong Zhang 
1004a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1005a30f8f8cSSatish Balay }
1006a30f8f8cSSatish Balay 
10074a2ae208SSatish Balay #undef __FUNCT__
10084a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1009dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1010a30f8f8cSSatish Balay {
1011dfbe8321SBarry Smith   PetscErrorCode ierr;
10125a7c0312SHong Zhang 
1013a30f8f8cSSatish Balay   PetscFunctionBegin;
10145a7c0312SHong Zhang   ierr = MatMult(A,xx,yy);CHKERRQ(ierr);
10155a7c0312SHong Zhang   PetscFunctionReturn(0);
1016a30f8f8cSSatish Balay }
1017a30f8f8cSSatish Balay 
10184a2ae208SSatish Balay #undef __FUNCT__
10194a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1020dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1021a30f8f8cSSatish Balay {
1022dfbe8321SBarry Smith   PetscErrorCode ierr;
10235a7c0312SHong Zhang 
1024a30f8f8cSSatish Balay   PetscFunctionBegin;
10255a7c0312SHong Zhang   ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr);
10265a7c0312SHong Zhang   PetscFunctionReturn(0);
1027a30f8f8cSSatish Balay }
1028a30f8f8cSSatish Balay 
1029a30f8f8cSSatish Balay /*
1030a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1031a30f8f8cSSatish Balay    diagonal block
1032a30f8f8cSSatish Balay */
10334a2ae208SSatish Balay #undef __FUNCT__
10344a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1035dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1036a30f8f8cSSatish Balay {
1037a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1038dfbe8321SBarry Smith   PetscErrorCode ierr;
1039a30f8f8cSSatish Balay 
1040a30f8f8cSSatish Balay   PetscFunctionBegin;
104129bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1042a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1043a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1044a30f8f8cSSatish Balay }
1045a30f8f8cSSatish Balay 
10464a2ae208SSatish Balay #undef __FUNCT__
10474a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1048dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1049a30f8f8cSSatish Balay {
1050a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1051dfbe8321SBarry Smith   PetscErrorCode ierr;
1052a30f8f8cSSatish Balay 
1053a30f8f8cSSatish Balay   PetscFunctionBegin;
1054a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1055a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1056a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1057a30f8f8cSSatish Balay }
1058a30f8f8cSSatish Balay 
10594a2ae208SSatish Balay #undef __FUNCT__
10604a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10611302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1062a30f8f8cSSatish Balay {
1063a30f8f8cSSatish Balay   PetscFunctionBegin;
106480e57f9fSHong Zhang   SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format");
1065a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1066a30f8f8cSSatish Balay }
1067a30f8f8cSSatish Balay 
10684a2ae208SSatish Balay #undef __FUNCT__
10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1071a30f8f8cSSatish Balay {
1072a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1073a30f8f8cSSatish Balay 
1074a30f8f8cSSatish Balay   PetscFunctionBegin;
1075abc0a331SBarry Smith   if (!baij->getrowactive) {
1076abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1077a30f8f8cSSatish Balay   }
1078a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1079a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1080a30f8f8cSSatish Balay }
1081a30f8f8cSSatish Balay 
10824a2ae208SSatish Balay #undef __FUNCT__
10834a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1084dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1085a30f8f8cSSatish Balay {
1086a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1087dfbe8321SBarry Smith   PetscErrorCode ierr;
1088a30f8f8cSSatish Balay 
1089a30f8f8cSSatish Balay   PetscFunctionBegin;
1090a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1091a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1092a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1093a30f8f8cSSatish Balay }
1094a30f8f8cSSatish Balay 
10954a2ae208SSatish Balay #undef __FUNCT__
10964a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1097dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1098a30f8f8cSSatish Balay {
1099a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1100a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1101dfbe8321SBarry Smith   PetscErrorCode ierr;
1102a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1103a30f8f8cSSatish Balay 
1104a30f8f8cSSatish Balay   PetscFunctionBegin;
1105521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1106a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1107a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1108a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1109a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1110a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1111a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1112a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1113a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1114a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1115a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1116a30f8f8cSSatish Balay     info->memory       = isend[3];
1117a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1118a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1119d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1120a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1121a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1122a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1123a30f8f8cSSatish Balay     info->memory       = irecv[3];
1124a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1125a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1126d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1127a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1128a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1129a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1130a30f8f8cSSatish Balay     info->memory       = irecv[3];
1131a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1132a30f8f8cSSatish Balay   } else {
113377431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1134a30f8f8cSSatish Balay   }
1135f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1136f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1137f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1138f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1139a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1140a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1141a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1142a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1143a30f8f8cSSatish Balay }
1144a30f8f8cSSatish Balay 
11454a2ae208SSatish Balay #undef __FUNCT__
11464a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1147dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1148a30f8f8cSSatish Balay {
1149a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1150dfbe8321SBarry Smith   PetscErrorCode ierr;
1151a30f8f8cSSatish Balay 
1152a30f8f8cSSatish Balay   PetscFunctionBegin;
1153e98b92d7SKris Buschelman   switch (op) {
1154e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1155e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1156e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1157e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1158e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1159e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1160e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1161a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1162a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1163e98b92d7SKris Buschelman     break;
1164e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1165a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1166a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1167a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1168e98b92d7SKris Buschelman     break;
1169e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1170e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1171e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1172b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1173e98b92d7SKris Buschelman     break;
1174e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1175a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1176a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1178e98b92d7SKris Buschelman     break;
1179e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1180a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1181e98b92d7SKris Buschelman     break;
1182e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
118329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1184e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1185a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1186e98b92d7SKris Buschelman     break;
11879a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
11889a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
11899a4540c5SBarry Smith   case MAT_HERMITIAN:
11909a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
119177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
119277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
11939a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
11949a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
11959a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
119677e54ba9SKris Buschelman     break;
1197e98b92d7SKris Buschelman   default:
119829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1199a30f8f8cSSatish Balay   }
1200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1201a30f8f8cSSatish Balay }
1202a30f8f8cSSatish Balay 
12034a2ae208SSatish Balay #undef __FUNCT__
12048115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1205dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1206a30f8f8cSSatish Balay {
1207dfbe8321SBarry Smith   PetscErrorCode ierr;
1208a30f8f8cSSatish Balay   PetscFunctionBegin;
1209999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
12108115998fSBarry Smith   PetscFunctionReturn(0);
1211a30f8f8cSSatish Balay }
1212a30f8f8cSSatish Balay 
12134a2ae208SSatish Balay #undef __FUNCT__
12144a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1215dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1216a30f8f8cSSatish Balay {
1217a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1218a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1219dfbe8321SBarry Smith   PetscErrorCode ierr;
12205e90f9d9SHong Zhang   PetscInt       nv,m,n;
1221*b3bf805bSHong Zhang   PetscTruth     flg;
1222a30f8f8cSSatish Balay 
1223a30f8f8cSSatish Balay   PetscFunctionBegin;
1224a30f8f8cSSatish Balay   if (ll != rr){
1225*b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1226*b3bf805bSHong Zhang     if (!flg)
122729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1228a30f8f8cSSatish Balay   }
1229*b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1230*b3bf805bSHong Zhang 
12315e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12325e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1233*b3bf805bSHong Zhang 
12345e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12355e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12365e90f9d9SHong Zhang 
1237a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
12385e90f9d9SHong Zhang 
12395e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1240a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12415e90f9d9SHong Zhang 
12425e90f9d9SHong Zhang   /* scale the diagonal part */
1243a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1244a30f8f8cSSatish Balay 
12455e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1246a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1247a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1248a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1249a30f8f8cSSatish Balay }
1250a30f8f8cSSatish Balay 
12514a2ae208SSatish Balay #undef __FUNCT__
12524a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1253dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1254a30f8f8cSSatish Balay {
1255a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1256a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
12571302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1258dfbe8321SBarry Smith   PetscErrorCode    ierr;
1259a30f8f8cSSatish Balay 
1260a30f8f8cSSatish Balay   PetscFunctionBegin;
1261a30f8f8cSSatish Balay   if (!a->rank) {
1262a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1263a30f8f8cSSatish Balay   }
12641302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1265a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1266a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1267a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1268a30f8f8cSSatish Balay }
1269a30f8f8cSSatish Balay 
12704a2ae208SSatish Balay #undef __FUNCT__
12714a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1272dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1273a30f8f8cSSatish Balay {
1274f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1275dfbe8321SBarry Smith   PetscErrorCode ierr;
1276a30f8f8cSSatish Balay 
1277a30f8f8cSSatish Balay   PetscFunctionBegin;
1278a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1279a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1280a30f8f8cSSatish Balay }
1281a30f8f8cSSatish Balay 
12826849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1283a30f8f8cSSatish Balay 
12844a2ae208SSatish Balay #undef __FUNCT__
12854a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1286dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1287a30f8f8cSSatish Balay {
1288a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1289a30f8f8cSSatish Balay   Mat            a,b,c,d;
1290a30f8f8cSSatish Balay   PetscTruth     flg;
1291dfbe8321SBarry Smith   PetscErrorCode ierr;
1292a30f8f8cSSatish Balay 
1293a30f8f8cSSatish Balay   PetscFunctionBegin;
1294a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1295a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1296a30f8f8cSSatish Balay 
1297a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1298abc0a331SBarry Smith   if (flg) {
1299a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1300a30f8f8cSSatish Balay   }
1301a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1302a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1303a30f8f8cSSatish Balay }
1304a30f8f8cSSatish Balay 
13054a2ae208SSatish Balay #undef __FUNCT__
13064a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1307dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1308273d9f13SBarry Smith {
1309dfbe8321SBarry Smith   PetscErrorCode ierr;
1310273d9f13SBarry Smith 
1311273d9f13SBarry Smith   PetscFunctionBegin;
1312273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1313273d9f13SBarry Smith   PetscFunctionReturn(0);
1314273d9f13SBarry Smith }
1315a5e6ed63SBarry Smith 
1316a5e6ed63SBarry Smith #undef __FUNCT__
1317a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
13181302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1319a5e6ed63SBarry Smith {
13206849ba73SBarry Smith   PetscErrorCode ierr;
13211302d50aSBarry Smith   PetscInt       i;
1322a5e6ed63SBarry Smith   PetscTruth     flg;
1323a5e6ed63SBarry Smith 
13246849ba73SBarry Smith   PetscFunctionBegin;
1325a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1326a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1327a5e6ed63SBarry Smith     if (!flg) {
13281302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1329a5e6ed63SBarry Smith     }
1330a5e6ed63SBarry Smith   }
1331a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1332a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1333a5e6ed63SBarry Smith }
1334a5e6ed63SBarry Smith 
1335a5e6ed63SBarry Smith 
1336a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1337a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1338a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1339a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1340a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1341a9d4b620SHong Zhang        MatMult_MPISBAIJ,
134297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1343a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1344a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1345a30f8f8cSSatish Balay        0,
1346a30f8f8cSSatish Balay        0,
1347a30f8f8cSSatish Balay        0,
134897304618SKris Buschelman /*10*/ 0,
1349a30f8f8cSSatish Balay        0,
1350a30f8f8cSSatish Balay        0,
13512798e883SHong Zhang        MatRelax_MPISBAIJ,
1352a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
135397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1354a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1355a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1356a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1357a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
135897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1359a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1360a30f8f8cSSatish Balay        0,
1361a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1362a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1363dcf5cc72SBarry Smith /*25*/ 0,
1364a30f8f8cSSatish Balay        0,
1365a30f8f8cSSatish Balay        0,
1366a30f8f8cSSatish Balay        0,
1367a30f8f8cSSatish Balay        0,
136897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1369b5df2d14SHong Zhang        0,
1370a30f8f8cSSatish Balay        0,
1371a30f8f8cSSatish Balay        0,
1372a30f8f8cSSatish Balay        0,
137397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1374a30f8f8cSSatish Balay        0,
1375a30f8f8cSSatish Balay        0,
1376a30f8f8cSSatish Balay        0,
1377a30f8f8cSSatish Balay        0,
137897304618SKris Buschelman /*40*/ 0,
1379a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1380d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1381a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1382a30f8f8cSSatish Balay        0,
138397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1384a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1385a30f8f8cSSatish Balay        0,
1386a30f8f8cSSatish Balay        0,
1387a30f8f8cSSatish Balay        0,
1388521d7252SBarry Smith /*50*/ 0,
1389a30f8f8cSSatish Balay        0,
1390a30f8f8cSSatish Balay        0,
1391a30f8f8cSSatish Balay        0,
1392a30f8f8cSSatish Balay        0,
139397304618SKris Buschelman /*55*/ 0,
1394a30f8f8cSSatish Balay        0,
1395a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1396a30f8f8cSSatish Balay        0,
1397a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
139897304618SKris Buschelman /*60*/ 0,
1399a30f8f8cSSatish Balay        0,
1400a30f8f8cSSatish Balay        0,
14018a124369SBarry Smith        MatGetPetscMaps_Petsc,
140224d5174aSHong Zhang        0,
140397304618SKris Buschelman /*65*/ 0,
140424d5174aSHong Zhang        0,
140524d5174aSHong Zhang        0,
140624d5174aSHong Zhang        0,
140724d5174aSHong Zhang        0,
140897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
140924d5174aSHong Zhang        0,
141097304618SKris Buschelman        0,
141197304618SKris Buschelman        0,
141297304618SKris Buschelman        0,
141397304618SKris Buschelman /*75*/ 0,
141497304618SKris Buschelman        0,
141597304618SKris Buschelman        0,
141697304618SKris Buschelman        0,
141797304618SKris Buschelman        0,
141897304618SKris Buschelman /*80*/ 0,
141997304618SKris Buschelman        0,
142097304618SKris Buschelman        0,
142197304618SKris Buschelman        0,
1422865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1423865e5f61SKris Buschelman /*85*/ 0,
1424865e5f61SKris Buschelman        0,
1425865e5f61SKris Buschelman        0,
1426865e5f61SKris Buschelman        0,
1427865e5f61SKris Buschelman        0,
1428865e5f61SKris Buschelman /*90*/ 0,
1429865e5f61SKris Buschelman        0,
1430865e5f61SKris Buschelman        0,
1431865e5f61SKris Buschelman        0,
1432865e5f61SKris Buschelman        0,
1433865e5f61SKris Buschelman /*95*/ 0,
1434865e5f61SKris Buschelman        0,
1435865e5f61SKris Buschelman        0,
1436865e5f61SKris Buschelman        0};
1437a30f8f8cSSatish Balay 
1438a30f8f8cSSatish Balay 
1439a30f8f8cSSatish Balay EXTERN_C_BEGIN
14404a2ae208SSatish Balay #undef __FUNCT__
14414a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1442dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1443a30f8f8cSSatish Balay {
1444a30f8f8cSSatish Balay   PetscFunctionBegin;
1445a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1446a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1447a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1448a30f8f8cSSatish Balay }
1449a30f8f8cSSatish Balay EXTERN_C_END
1450a30f8f8cSSatish Balay 
1451273d9f13SBarry Smith EXTERN_C_BEGIN
14524a2ae208SSatish Balay #undef __FUNCT__
1453a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
14541302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1455a23d5eceSKris Buschelman {
1456a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1457dfbe8321SBarry Smith   PetscErrorCode ierr;
14581302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1459a23d5eceSKris Buschelman 
1460a23d5eceSKris Buschelman   PetscFunctionBegin;
1461a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1462a23d5eceSKris Buschelman 
1463a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1464a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1465a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
146677431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
146777431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1468a23d5eceSKris Buschelman   if (d_nnz) {
1469a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
147077431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1471a23d5eceSKris Buschelman     }
1472a23d5eceSKris Buschelman   }
1473a23d5eceSKris Buschelman   if (o_nnz) {
1474a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
147577431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1476a23d5eceSKris Buschelman     }
1477a23d5eceSKris Buschelman   }
1478a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1479a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1480a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1481a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1482a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1483a23d5eceSKris Buschelman 
1484a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1485a23d5eceSKris Buschelman   mbs = B->m/bs;
1486a23d5eceSKris Buschelman   Mbs = B->M/bs;
1487a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
148877431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1489a23d5eceSKris Buschelman   }
1490a23d5eceSKris Buschelman 
1491521d7252SBarry Smith   B->bs  = bs;
1492a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1493a23d5eceSKris Buschelman   b->mbs = mbs;
1494a23d5eceSKris Buschelman   b->nbs = mbs;
1495a23d5eceSKris Buschelman   b->Mbs = Mbs;
1496a23d5eceSKris Buschelman   b->Nbs = Mbs;
1497a23d5eceSKris Buschelman 
1498a7cc72afSBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
1499a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1500a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1501a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1502a23d5eceSKris Buschelman   }
1503a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1504a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1505a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1506a23d5eceSKris Buschelman   b->cend      = b->rend;
1507a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1508a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1509a23d5eceSKris Buschelman   }
1510a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1511a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1512a23d5eceSKris Buschelman 
1513a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1514a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1515a23d5eceSKris Buschelman 
15169c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr);
15179c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1518c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
15199c097c71SKris Buschelman   PetscLogObjectParent(B,b->A);
15209c097c71SKris Buschelman 
15219c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr);
15224aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1523589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
15249c097c71SKris Buschelman   PetscLogObjectParent(B,b->B);
1525a23d5eceSKris Buschelman 
1526a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1527a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1528a23d5eceSKris Buschelman 
1529a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1530a23d5eceSKris Buschelman }
1531a23d5eceSKris Buschelman EXTERN_C_END
1532a23d5eceSKris Buschelman 
15330bad9183SKris Buschelman /*MC
1534fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
15350bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15360bad9183SKris Buschelman 
15370bad9183SKris Buschelman    Options Database Keys:
15380bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
15390bad9183SKris Buschelman 
15400bad9183SKris Buschelman   Level: beginner
15410bad9183SKris Buschelman 
15420bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
15430bad9183SKris Buschelman M*/
15440bad9183SKris Buschelman 
1545a23d5eceSKris Buschelman EXTERN_C_BEGIN
1546a23d5eceSKris Buschelman #undef __FUNCT__
15474a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1548dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1549b5df2d14SHong Zhang {
1550b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1551dfbe8321SBarry Smith   PetscErrorCode ierr;
1552b5df2d14SHong Zhang   PetscTruth     flg;
1553b5df2d14SHong Zhang 
1554b5df2d14SHong Zhang   PetscFunctionBegin;
1555b5df2d14SHong Zhang 
1556b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1557b0a32e0cSBarry Smith   B->data = (void*)b;
1558b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1559b5df2d14SHong Zhang 
1560b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1561b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1562b5df2d14SHong Zhang   B->mapping    = 0;
1563b5df2d14SHong Zhang   B->factor     = 0;
1564b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1565b5df2d14SHong Zhang 
1566b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1567b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1568b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1569b5df2d14SHong Zhang 
1570b5df2d14SHong Zhang   /* build local table of row and column ownerships */
15711302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1572273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1573273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
15741302d50aSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1575b5df2d14SHong Zhang 
1576b5df2d14SHong Zhang   /* build cache for off array entries formed */
1577b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1578b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1579b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1580b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1581b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1582b5df2d14SHong Zhang 
1583f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1584b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
158564a35ccbSBarry Smith   b->setvalueslen     = 0;
1586b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1587b5df2d14SHong Zhang #endif
1588b5df2d14SHong Zhang 
1589b5df2d14SHong Zhang   /* stuff used in block assembly */
1590b5df2d14SHong Zhang   b->barray       = 0;
1591b5df2d14SHong Zhang 
1592b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1593b5df2d14SHong Zhang   b->lvec         = 0;
1594b5df2d14SHong Zhang   b->Mvctx        = 0;
159540781036SHong Zhang   b->slvec0       = 0;
159640781036SHong Zhang   b->slvec0b      = 0;
159740781036SHong Zhang   b->slvec1       = 0;
159840781036SHong Zhang   b->slvec1a      = 0;
159940781036SHong Zhang   b->slvec1b      = 0;
160040781036SHong Zhang   b->sMvctx       = 0;
1601b5df2d14SHong Zhang 
1602b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1603b5df2d14SHong Zhang   b->rowindices   = 0;
1604b5df2d14SHong Zhang   b->rowvalues    = 0;
1605b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1606b5df2d14SHong Zhang 
1607b5df2d14SHong Zhang   /* hash table stuff */
1608b5df2d14SHong Zhang   b->ht           = 0;
1609b5df2d14SHong Zhang   b->hd           = 0;
1610b5df2d14SHong Zhang   b->ht_size      = 0;
1611b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1612b5df2d14SHong Zhang   b->ht_fact      = 0;
1613b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1614b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1615b5df2d14SHong Zhang 
1616e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1617b5df2d14SHong Zhang   if (flg) {
1618f6275e2eSBarry Smith     PetscReal fact = 1.39;
1619b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1620e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1621b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1622b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1623b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1624b5df2d14SHong Zhang   }
1625b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1626b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1627b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1628b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1629b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1630b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1631b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1632b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1633b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1634a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1635a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1636a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
163723ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
163823ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
163923ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
164023ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1641b5df2d14SHong Zhang   PetscFunctionReturn(0);
1642b5df2d14SHong Zhang }
1643273d9f13SBarry Smith EXTERN_C_END
1644b5df2d14SHong Zhang 
1645209238afSKris Buschelman /*MC
1646002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1647209238afSKris Buschelman 
1648209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1649209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1650209238afSKris Buschelman 
1651209238afSKris Buschelman    Options Database Keys:
1652209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1653209238afSKris Buschelman 
1654209238afSKris Buschelman   Level: beginner
1655209238afSKris Buschelman 
1656209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1657209238afSKris Buschelman M*/
1658209238afSKris Buschelman 
1659209238afSKris Buschelman EXTERN_C_BEGIN
1660209238afSKris Buschelman #undef __FUNCT__
1661209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1662dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A)
1663dfbe8321SBarry Smith {
16646849ba73SBarry Smith   PetscErrorCode ierr;
16651302d50aSBarry Smith   PetscMPIInt    size;
1666209238afSKris Buschelman 
1667209238afSKris Buschelman   PetscFunctionBegin;
1668209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1669209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1670209238afSKris Buschelman   if (size == 1) {
1671209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1672209238afSKris Buschelman   } else {
1673209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1674209238afSKris Buschelman   }
1675209238afSKris Buschelman   PetscFunctionReturn(0);
1676209238afSKris Buschelman }
1677209238afSKris Buschelman EXTERN_C_END
1678209238afSKris Buschelman 
16794a2ae208SSatish Balay #undef __FUNCT__
16804a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1681b5df2d14SHong Zhang /*@C
1682b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1683b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1684b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1685b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1686b5df2d14SHong Zhang 
1687b5df2d14SHong Zhang    Collective on Mat
1688b5df2d14SHong Zhang 
1689b5df2d14SHong Zhang    Input Parameters:
1690b5df2d14SHong Zhang +  A - the matrix
1691b5df2d14SHong Zhang .  bs   - size of blockk
1692b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1693b5df2d14SHong Zhang            submatrix  (same for all local rows)
1694b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
16956d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
16966d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
16976d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1698b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1699b5df2d14SHong Zhang            submatrix (same for all local rows).
1700b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1701b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1702b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1703b5df2d14SHong Zhang 
1704b5df2d14SHong Zhang 
1705b5df2d14SHong Zhang    Options Database Keys:
1706b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1707b5df2d14SHong Zhang                      block calculations (much slower)
1708b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1709b5df2d14SHong Zhang 
1710b5df2d14SHong Zhang    Notes:
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1713b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1714b5df2d14SHong Zhang 
171549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
171649a6f317SBarry Smith 
1717b5df2d14SHong Zhang    Storage Information:
1718b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1719b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1720b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1721b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1722b5df2d14SHong Zhang 
1723b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1724b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1725b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1726b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1727b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1730b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1731b5df2d14SHong Zhang 
1732b5df2d14SHong Zhang .vb
1733b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1734b5df2d14SHong Zhang           -------------------
1735b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1736b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1737b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1738b5df2d14SHong Zhang           -------------------
1739b5df2d14SHong Zhang .ve
1740b5df2d14SHong Zhang 
1741b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1742b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17436d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17446d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1745b5df2d14SHong Zhang 
17466d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17476d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1748b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1749b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1750b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1751b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1752b5df2d14SHong Zhang    matrices.
1753b5df2d14SHong Zhang 
1754b5df2d14SHong Zhang    Level: intermediate
1755b5df2d14SHong Zhang 
1756b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1757b5df2d14SHong Zhang 
1758b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1759b5df2d14SHong Zhang @*/
17601302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1761b5df2d14SHong Zhang {
17621302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1763b5df2d14SHong Zhang 
1764b5df2d14SHong Zhang   PetscFunctionBegin;
1765a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1766a23d5eceSKris Buschelman   if (f) {
1767a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1768b5df2d14SHong Zhang   }
1769b5df2d14SHong Zhang   PetscFunctionReturn(0);
1770b5df2d14SHong Zhang }
1771b5df2d14SHong Zhang 
17724a2ae208SSatish Balay #undef __FUNCT__
17734a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1774a30f8f8cSSatish Balay /*@C
1775a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1776a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1777a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1778a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1779a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1780a30f8f8cSSatish Balay 
1781a30f8f8cSSatish Balay    Collective on MPI_Comm
1782a30f8f8cSSatish Balay 
1783a30f8f8cSSatish Balay    Input Parameters:
1784a30f8f8cSSatish Balay +  comm - MPI communicator
1785a30f8f8cSSatish Balay .  bs   - size of blockk
1786a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1787a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1788a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1789a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1790a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1791a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1792a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1793a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1794a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1795a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1796a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
17976d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
17986d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
17996d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1800a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1801a30f8f8cSSatish Balay            submatrix (same for all local rows).
1802a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1803a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1804a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1805a30f8f8cSSatish Balay 
1806a30f8f8cSSatish Balay    Output Parameter:
1807a30f8f8cSSatish Balay .  A - the matrix
1808a30f8f8cSSatish Balay 
1809a30f8f8cSSatish Balay    Options Database Keys:
1810a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1811a30f8f8cSSatish Balay                      block calculations (much slower)
1812a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1813a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1814a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1815a30f8f8cSSatish Balay 
1816a30f8f8cSSatish Balay    Notes:
1817a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1818a30f8f8cSSatish Balay    (possibly both).
1819a30f8f8cSSatish Balay 
1820a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1821a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1822a30f8f8cSSatish Balay 
182349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
182449a6f317SBarry Smith 
1825a30f8f8cSSatish Balay    Storage Information:
1826a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1827a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1828a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1829a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1830a30f8f8cSSatish Balay 
1831a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1832a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1833a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1834a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1835a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1836a30f8f8cSSatish Balay 
1837a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1838a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1839a30f8f8cSSatish Balay 
1840a30f8f8cSSatish Balay .vb
1841a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1842a30f8f8cSSatish Balay           -------------------
1843a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1844a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1845a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1846a30f8f8cSSatish Balay           -------------------
1847a30f8f8cSSatish Balay .ve
1848a30f8f8cSSatish Balay 
1849a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1850a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
18516d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18526d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1853a30f8f8cSSatish Balay 
18546d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18556d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1856a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1857a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1858a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1859a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1860a30f8f8cSSatish Balay    matrices.
1861a30f8f8cSSatish Balay 
1862a30f8f8cSSatish Balay    Level: intermediate
1863a30f8f8cSSatish Balay 
1864a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1865a30f8f8cSSatish Balay 
1866a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1867a30f8f8cSSatish Balay @*/
1868a30f8f8cSSatish Balay 
18691302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1870a30f8f8cSSatish Balay {
18716849ba73SBarry Smith   PetscErrorCode ierr;
18721302d50aSBarry Smith   PetscMPIInt    size;
1873a30f8f8cSSatish Balay 
1874a30f8f8cSSatish Balay   PetscFunctionBegin;
1875b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1876273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1877273d9f13SBarry Smith   if (size > 1) {
1878b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1879b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1880273d9f13SBarry Smith   } else {
1881273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1882273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1883273d9f13SBarry Smith   }
1884a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1885a30f8f8cSSatish Balay }
1886a30f8f8cSSatish Balay 
1887a30f8f8cSSatish Balay 
18884a2ae208SSatish Balay #undef __FUNCT__
18894a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
18906849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1891a30f8f8cSSatish Balay {
1892a30f8f8cSSatish Balay   Mat            mat;
1893a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1894dfbe8321SBarry Smith   PetscErrorCode ierr;
1895521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
1896387bc808SHong Zhang   PetscScalar    *array;
1897a30f8f8cSSatish Balay 
1898a30f8f8cSSatish Balay   PetscFunctionBegin;
1899a30f8f8cSSatish Balay   *newmat       = 0;
1900b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1901be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
19021d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1903e1b6402fSHong Zhang 
190482327fa8SHong Zhang   mat->factor       = matin->factor;
1905273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
190682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
19077fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
19087fff6886SHong Zhang 
1909b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1910521d7252SBarry Smith   mat->bs  = matin->bs;
1911a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
1912a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
1913a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
1914a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
1915a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
1916a30f8f8cSSatish Balay 
1917a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1918a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1919a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1920a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1921a30f8f8cSSatish Balay   a->size         = oldmat->size;
1922a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1923a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1924a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1925a30f8f8cSSatish Balay   a->rowindices   = 0;
1926a30f8f8cSSatish Balay   a->rowvalues    = 0;
1927a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1928a30f8f8cSSatish Balay   a->barray       = 0;
1929a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1930a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1931a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1932a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1933a30f8f8cSSatish Balay 
1934a30f8f8cSSatish Balay   /* hash table stuff */
1935a30f8f8cSSatish Balay   a->ht           = 0;
1936a30f8f8cSSatish Balay   a->hd           = 0;
1937a30f8f8cSSatish Balay   a->ht_size      = 0;
1938a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1939a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1940a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1941a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1942a30f8f8cSSatish Balay 
19431302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
1944a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
1945521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
1946a30f8f8cSSatish Balay   if (oldmat->colmap) {
1947a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
1948a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1949a30f8f8cSSatish Balay #else
19501302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
19511302d50aSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));
19521302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
1953a30f8f8cSSatish Balay #endif
1954a30f8f8cSSatish Balay   } else a->colmap = 0;
1955387bc808SHong Zhang 
1956a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
19571302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
19581302d50aSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(PetscInt));
19591302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
1960a30f8f8cSSatish Balay   } else a->garray = 0;
1961a30f8f8cSSatish Balay 
1962a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
1963b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
1964a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
1965b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
196682327fa8SHong Zhang 
196782327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
1968387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
196982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
1970387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
1971387bc808SHong Zhang 
1972387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
19731ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
1974387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
1975387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
19761ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
19771ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
1978387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
19791ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
1980387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
1981387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
1982387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0b);
1983387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1a);
1984387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1b);
1985387bc808SHong Zhang 
1986387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
1987387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
1988387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
1989387bc808SHong Zhang   PetscLogObjectParent(mat,a->sMvctx);
199082327fa8SHong Zhang 
1991a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
1992b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
1993a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
1994b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
1995b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
1996a30f8f8cSSatish Balay   *newmat = mat;
1997a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1998a30f8f8cSSatish Balay }
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay #include "petscsys.h"
2001a30f8f8cSSatish Balay 
20024a2ae208SSatish Balay #undef __FUNCT__
20034a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2004dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
2005a30f8f8cSSatish Balay {
2006a30f8f8cSSatish Balay   Mat            A;
20076849ba73SBarry Smith   PetscErrorCode ierr;
200813f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
200987828ca2SBarry Smith   PetscScalar    *vals,*buf;
2010a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2011a30f8f8cSSatish Balay   MPI_Status     status;
201213f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners;
201313f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
201413f74950SBarry Smith   PetscInt       *locrowlens,*procsnz = 0,jj,*mycols,*ibuf;
20151302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
20161302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
20171302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
201813f74950SBarry Smith   int            fd;
2019a30f8f8cSSatish Balay 
2020a30f8f8cSSatish Balay   PetscFunctionBegin;
2021b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2022a30f8f8cSSatish Balay 
2023a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2024a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2025a30f8f8cSSatish Balay   if (!rank) {
2026b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2027a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2028552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2029a30f8f8cSSatish Balay     if (header[3] < 0) {
203029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2031a30f8f8cSSatish Balay     }
2032a30f8f8cSSatish Balay   }
2033a30f8f8cSSatish Balay 
2034a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2035a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2036a30f8f8cSSatish Balay 
203729bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2038a30f8f8cSSatish Balay 
2039a30f8f8cSSatish Balay   /*
2040a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2041a30f8f8cSSatish Balay      divisible by the blocksize
2042a30f8f8cSSatish Balay   */
2043a30f8f8cSSatish Balay   Mbs        = M/bs;
2044a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2045a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2046a30f8f8cSSatish Balay   else                  Mbs++;
2047a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2048b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2049a30f8f8cSSatish Balay   }
2050a30f8f8cSSatish Balay 
2051a30f8f8cSSatish Balay   /* determine ownership of all rows */
2052a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2053a30f8f8cSSatish Balay   m          = mbs*bs;
2054a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2055a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2056a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2057a30f8f8cSSatish Balay   rowners[0] = 0;
2058a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2059a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2060a30f8f8cSSatish Balay   rstart = rowners[rank];
2061a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2062a30f8f8cSSatish Balay 
2063a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
20641302d50aSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
2065a30f8f8cSSatish Balay   if (!rank) {
20661302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2067a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2068a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2069a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2070a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2071a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2072a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2073a30f8f8cSSatish Balay   } else {
2074a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2075a30f8f8cSSatish Balay   }
2076a30f8f8cSSatish Balay 
20770222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2078a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
20791302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
20801302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2081a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2082a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2083a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2084a30f8f8cSSatish Balay       }
2085a30f8f8cSSatish Balay     }
2086a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2087a30f8f8cSSatish Balay 
2088a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2089a30f8f8cSSatish Balay     maxnz = 0;
2090a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2091a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2092a30f8f8cSSatish Balay     }
20931302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2094a30f8f8cSSatish Balay 
2095a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2096a30f8f8cSSatish Balay     nz     = procsnz[0];
20971302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2098a30f8f8cSSatish Balay     mycols = ibuf;
2099a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2100a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2102a30f8f8cSSatish Balay 
2103a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2104a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2105a30f8f8cSSatish Balay       nz   = procsnz[i];
2106a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2107a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2108a30f8f8cSSatish Balay     }
2109a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2110a30f8f8cSSatish Balay     if (size != 1) {
2111a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2112a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2113a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2114a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2115a30f8f8cSSatish Balay     }
2116a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21170222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2118a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2119a30f8f8cSSatish Balay     nz = 0;
2120a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2121a30f8f8cSSatish Balay       nz += locrowlens[i];
2122a30f8f8cSSatish Balay     }
21231302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2124a30f8f8cSSatish Balay     mycols = ibuf;
2125a30f8f8cSSatish Balay     /* receive message of column indices*/
2126a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2127a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
212829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2129a30f8f8cSSatish Balay   }
2130a30f8f8cSSatish Balay 
2131a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
21321302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2133a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
21341302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
21351302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2136a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2137a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2138a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2139a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2140a30f8f8cSSatish Balay     dcount  = 0;
2141a30f8f8cSSatish Balay     odcount = 0;
2142a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2143a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2144a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21450222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2146a30f8f8cSSatish Balay         if (!mask[tmp]) {
2147a30f8f8cSSatish Balay           mask[tmp] = 1;
21480222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
21490222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2150a30f8f8cSSatish Balay         }
2151a30f8f8cSSatish Balay       }
2152a30f8f8cSSatish Balay       rowcount++;
2153a30f8f8cSSatish Balay     }
2154a30f8f8cSSatish Balay 
21550222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
21560222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2157a30f8f8cSSatish Balay 
2158a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2159a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2160a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2161a30f8f8cSSatish Balay   }
2162a30f8f8cSSatish Balay 
2163a30f8f8cSSatish Balay   /* create our matrix */
216422191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
216522191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
216622191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2167273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2168a30f8f8cSSatish Balay 
2169a30f8f8cSSatish Balay   if (!rank) {
217087828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2172a30f8f8cSSatish Balay     nz = procsnz[0];
2173a30f8f8cSSatish Balay     vals = buf;
2174a30f8f8cSSatish Balay     mycols = ibuf;
2175a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2176a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2178a30f8f8cSSatish Balay 
2179a30f8f8cSSatish Balay     /* insert into matrix */
2180a30f8f8cSSatish Balay     jj      = rstart*bs;
2181a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
21827e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2183a30f8f8cSSatish Balay       mycols += locrowlens[i];
2184a30f8f8cSSatish Balay       vals   += locrowlens[i];
2185a30f8f8cSSatish Balay       jj++;
2186a30f8f8cSSatish Balay     }
21877e06b45fSHong Zhang 
2188a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2189a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2190a30f8f8cSSatish Balay       nz   = procsnz[i];
2191a30f8f8cSSatish Balay       vals = buf;
2192a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2193a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay     }
2195a30f8f8cSSatish Balay     /* the last proc */
2196a30f8f8cSSatish Balay     if (size != 1){
2197a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2198a30f8f8cSSatish Balay       vals = buf;
2199a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2200a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2201a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2202a30f8f8cSSatish Balay     }
2203a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22047e06b45fSHong Zhang 
2205a30f8f8cSSatish Balay   } else {
2206a30f8f8cSSatish Balay     /* receive numeric values */
220787828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2208a30f8f8cSSatish Balay 
2209a30f8f8cSSatish Balay     /* receive message of values*/
2210a30f8f8cSSatish Balay     vals   = buf;
2211a30f8f8cSSatish Balay     mycols = ibuf;
2212a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2213a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
221429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2215a30f8f8cSSatish Balay 
2216a30f8f8cSSatish Balay     /* insert into matrix */
2217a30f8f8cSSatish Balay     jj      = rstart*bs;
2218a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2219a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay       mycols += locrowlens[i];
2221a30f8f8cSSatish Balay       vals   += locrowlens[i];
2222a30f8f8cSSatish Balay       jj++;
2223a30f8f8cSSatish Balay     }
2224a30f8f8cSSatish Balay   }
22257e06b45fSHong Zhang 
2226a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2233a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
223422191285SKris Buschelman   *newmat = A;
2235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2236a30f8f8cSSatish Balay }
2237a30f8f8cSSatish Balay 
22384a2ae208SSatish Balay #undef __FUNCT__
22394a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2240dcf5cc72SBarry Smith /*XXXXX@
2241a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2242a30f8f8cSSatish Balay 
2243a30f8f8cSSatish Balay    Input Parameters:
2244a30f8f8cSSatish Balay .  mat  - the matrix
2245a30f8f8cSSatish Balay .  fact - factor
2246a30f8f8cSSatish Balay 
2247a30f8f8cSSatish Balay    Collective on Mat
2248a30f8f8cSSatish Balay 
2249a30f8f8cSSatish Balay    Level: advanced
2250a30f8f8cSSatish Balay 
2251a30f8f8cSSatish Balay   Notes:
2252a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2253a30f8f8cSSatish Balay 
2254a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2255a30f8f8cSSatish Balay 
2256a30f8f8cSSatish Balay .seealso: MatSetOption()
2257dcf5cc72SBarry Smith @XXXXX*/
2258dcf5cc72SBarry Smith 
225924d5174aSHong Zhang 
22604a2ae208SSatish Balay #undef __FUNCT__
22614a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2262dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
226324d5174aSHong Zhang {
226424d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2265f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2266ca54ac64SHong Zhang   PetscReal      atmp;
226787828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2268dfbe8321SBarry Smith   PetscErrorCode ierr;
22691302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
22701302d50aSBarry Smith   PetscMPIInt    rank,size;
22711302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
227287828ca2SBarry Smith   PetscScalar    *va;
22738a1c53f2SBarry Smith   MatScalar      *ba;
2274f4c0e9e4SHong Zhang   MPI_Status     stat;
227524d5174aSHong Zhang 
227624d5174aSHong Zhang   PetscFunctionBegin;
2277d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
22781ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2279f4c0e9e4SHong Zhang 
228056faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
228156faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2282f4c0e9e4SHong Zhang 
2283521d7252SBarry Smith   bs   = A->bs;
2284f4c0e9e4SHong Zhang   mbs  = a->mbs;
2285f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2286f4c0e9e4SHong Zhang   ba   = b->a;
2287f4c0e9e4SHong Zhang   bi   = b->i;
2288f4c0e9e4SHong Zhang   bj   = b->j;
2289f4c0e9e4SHong Zhang 
2290f4c0e9e4SHong Zhang   /* find ownerships */
2291f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2292f4c0e9e4SHong Zhang 
2293f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
229482502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2295ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2296f4c0e9e4SHong Zhang 
2297f4c0e9e4SHong Zhang   /* row_max for B */
2298b8475685SHong Zhang   if (rank != size-1){
2299f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2300f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2301f4c0e9e4SHong Zhang       brow  = bs*i;
2302f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2303f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2304f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2305ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
230604d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2307f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2308f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2309ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2310ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2311f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2312f4c0e9e4SHong Zhang           }
2313f4c0e9e4SHong Zhang         }
2314f4c0e9e4SHong Zhang         bj++;
2315f4c0e9e4SHong Zhang       }
2316f4c0e9e4SHong Zhang     }
2317f4c0e9e4SHong Zhang 
2318f4c0e9e4SHong Zhang     /* send values to its owners */
2319f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2320f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2321ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
232256faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2323ca54ac64SHong Zhang     }
2324f4c0e9e4SHong Zhang   }
2325f4c0e9e4SHong Zhang 
2326f4c0e9e4SHong Zhang   /* receive values */
2327ca54ac64SHong Zhang   if (rank){
2328f4c0e9e4SHong Zhang     rvalues = work;
2329ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2330f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
233156faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2332f4c0e9e4SHong Zhang       /* process values */
2333f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2334ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2335f4c0e9e4SHong Zhang       }
2336f4c0e9e4SHong Zhang     }
2337ca54ac64SHong Zhang   }
2338f4c0e9e4SHong Zhang 
23391ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2340ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
234124d5174aSHong Zhang   PetscFunctionReturn(0);
234224d5174aSHong Zhang }
23432798e883SHong Zhang 
23442798e883SHong Zhang #undef __FUNCT__
23452798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
23461302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
23472798e883SHong Zhang {
23482798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2349dfbe8321SBarry Smith   PetscErrorCode ierr;
2350521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2351ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2352ffe4fb16SHong Zhang   Vec            bb1;
2353ffe4fb16SHong Zhang 
2354ffe4fb16SHong Zhang   PetscFunctionBegin;
235577431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2356ffe4fb16SHong Zhang   if (bs > 1)
2357ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2358ffe4fb16SHong Zhang 
2359ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2360ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2361ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2362ffe4fb16SHong Zhang       its--;
2363ffe4fb16SHong Zhang     }
2364ffe4fb16SHong Zhang 
2365ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2366ffe4fb16SHong Zhang     while (its--){
2367ffe4fb16SHong Zhang 
2368ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2369ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2370ffe4fb16SHong Zhang 
2371ffe4fb16SHong Zhang       /* copy xx into slvec0a */
23721ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
23731ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2374ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
23751ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2376ffe4fb16SHong Zhang 
2377ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2378ffe4fb16SHong Zhang 
2379ffe4fb16SHong Zhang       /* copy bb into slvec1a */
23801ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
23811ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2382ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
23831ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2384ffe4fb16SHong Zhang 
2385ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2386ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2387ffe4fb16SHong Zhang 
2388ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
23891ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
23901ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2391ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2392ffe4fb16SHong Zhang 
2393ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2394ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2395ffe4fb16SHong Zhang 
2396ffe4fb16SHong Zhang       /* local diagonal sweep */
2397ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2398ffe4fb16SHong Zhang     }
2399ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2400ffe4fb16SHong Zhang   } else {
2401ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2402ffe4fb16SHong Zhang   }
2403ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2404ffe4fb16SHong Zhang }
2405ffe4fb16SHong Zhang 
2406ffe4fb16SHong Zhang #undef __FUNCT__
2407ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
24081302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2409ffe4fb16SHong Zhang {
2410ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2411dfbe8321SBarry Smith   PetscErrorCode ierr;
2412d05c616dSSatish Balay   PetscScalar    mone=-1.0;
24132798e883SHong Zhang   Vec            lvec1,bb1;
24142798e883SHong Zhang 
24152798e883SHong Zhang   PetscFunctionBegin;
241677431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2417521d7252SBarry Smith   if (matin->bs > 1)
24182798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24192798e883SHong Zhang 
2420c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
24212798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2422bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
24232798e883SHong Zhang       its--;
24242798e883SHong Zhang     }
24252798e883SHong Zhang 
24262798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
24272798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24282798e883SHong Zhang     while (its--){
24292798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24302798e883SHong Zhang 
24312798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
24322798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
24332798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
24342798e883SHong Zhang 
24352798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24362798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
24372798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24382798e883SHong Zhang 
24392798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
24402798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
24412798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
24422798e883SHong Zhang 
24432798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24442798e883SHong Zhang 
2445c14dc6b6SHong Zhang       /* diagonal sweep */
2446bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
24472798e883SHong Zhang     }
24482798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
24492798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2450c14dc6b6SHong Zhang   } else {
2451c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2452c14dc6b6SHong Zhang   }
24532798e883SHong Zhang   PetscFunctionReturn(0);
24542798e883SHong Zhang }
24552798e883SHong Zhang 
2456