1*b5df2d14SHong Zhang /*$Id: mpisbaij.c,v 1.27 2000/10/11 19:24:56 hzhang Exp bsmith $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 11a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12a30f8f8cSSatish Balay extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *); 13a30f8f8cSSatish Balay extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15a30f8f8cSSatish Balay extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 16a30f8f8cSSatish Balay extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 18a30f8f8cSSatish Balay extern int MatZeroRows_SeqSBAIJ(Mat,IS,Scalar*); 1900319c27SSatish Balay extern int MatZeroRows_SeqBAIJ(Mat,IS,Scalar *); 20d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 21a30f8f8cSSatish Balay 22a30f8f8cSSatish Balay /* UGLY, ugly, ugly 23a30f8f8cSSatish Balay When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 24a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 25a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 26a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 27a30f8f8cSSatish Balay into the single precision data structures. 28a30f8f8cSSatish Balay */ 29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay #else 36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 41a30f8f8cSSatish Balay #endif 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay EXTERN_C_BEGIN 44a30f8f8cSSatish Balay #undef __FUNC__ 45f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatStoreValues_MPISBAIJ"></a>*/"MatStoreValues_MPISBAIJ" 46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 47a30f8f8cSSatish Balay { 48f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 49a30f8f8cSSatish Balay int ierr; 50a30f8f8cSSatish Balay 51a30f8f8cSSatish Balay PetscFunctionBegin; 52a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 54a30f8f8cSSatish Balay PetscFunctionReturn(0); 55a30f8f8cSSatish Balay } 56a30f8f8cSSatish Balay EXTERN_C_END 57a30f8f8cSSatish Balay 58a30f8f8cSSatish Balay EXTERN_C_BEGIN 59a30f8f8cSSatish Balay #undef __FUNC__ 60f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatRetrieveValues_MPISBAIJ"></a>*/"MatRetrieveValues_MPISBAIJ" 61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 62a30f8f8cSSatish Balay { 63f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 64a30f8f8cSSatish Balay int ierr; 65a30f8f8cSSatish Balay 66a30f8f8cSSatish Balay PetscFunctionBegin; 67a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 69a30f8f8cSSatish Balay PetscFunctionReturn(0); 70a30f8f8cSSatish Balay } 71a30f8f8cSSatish Balay EXTERN_C_END 72a30f8f8cSSatish Balay 73a30f8f8cSSatish Balay /* 74a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 75a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 76a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 77a30f8f8cSSatish Balay length of colmap equals the global matrix length. 78a30f8f8cSSatish Balay */ 79a30f8f8cSSatish Balay #undef __FUNC__ 80a30f8f8cSSatish Balay #define __FUNC__ /*<a name="CreateColmap_MPISBAIJ_Private"></a>*/"CreateColmap_MPISBAIJ_Private" 81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 82a30f8f8cSSatish Balay { 83a30f8f8cSSatish Balay PetscFunctionBegin; 8429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 86a30f8f8cSSatish Balay } 87a30f8f8cSSatish Balay 88a30f8f8cSSatish Balay #define CHUNKSIZE 10 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 91a30f8f8cSSatish Balay { \ 92a30f8f8cSSatish Balay \ 93a30f8f8cSSatish Balay brow = row/bs; \ 94a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 96a30f8f8cSSatish Balay bcol = col/bs; \ 97a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 98a30f8f8cSSatish Balay low = 0; high = nrow; \ 99a30f8f8cSSatish Balay while (high-low > 3) { \ 100a30f8f8cSSatish Balay t = (low+high)/2; \ 101a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 102a30f8f8cSSatish Balay else low = t; \ 103a30f8f8cSSatish Balay } \ 104a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 105a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 106a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 107a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 108a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 109a30f8f8cSSatish Balay else *bap = value; \ 110a30f8f8cSSatish Balay goto a_noinsert; \ 111a30f8f8cSSatish Balay } \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11429bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 115a30f8f8cSSatish Balay if (nrow >= rmax) { \ 116a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 117a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 118a30f8f8cSSatish Balay MatScalar *new_a; \ 119a30f8f8cSSatish Balay \ 12029bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 121a30f8f8cSSatish Balay \ 122a30f8f8cSSatish Balay /* malloc new storage space */ \ 123a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 124a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 125a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 126a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 127a30f8f8cSSatish Balay \ 128a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 129a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 130a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 131a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 132a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 135a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 137a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay /* free up old matrix storage */ \ 139a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 143a30f8f8cSSatish Balay } \ 144a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 145a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 146a30f8f8cSSatish Balay \ 147a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 148a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 149a30f8f8cSSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 150a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 151a30f8f8cSSatish Balay a->reallocs++; \ 152a30f8f8cSSatish Balay a->s_nz++; \ 153a30f8f8cSSatish Balay } \ 154a30f8f8cSSatish Balay N = nrow++ - 1; \ 155a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 156a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 157a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 158a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 159a30f8f8cSSatish Balay } \ 160a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 161a30f8f8cSSatish Balay rp[_i] = bcol; \ 162a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 163a30f8f8cSSatish Balay a_noinsert:; \ 164a30f8f8cSSatish Balay ailen[brow] = nrow; \ 165a30f8f8cSSatish Balay } 166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 167a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 168a30f8f8cSSatish Balay { \ 169a30f8f8cSSatish Balay brow = row/bs; \ 170a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 171a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 172a30f8f8cSSatish Balay bcol = col/bs; \ 173a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 174a30f8f8cSSatish Balay low = 0; high = nrow; \ 175a30f8f8cSSatish Balay while (high-low > 3) { \ 176a30f8f8cSSatish Balay t = (low+high)/2; \ 177a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 178a30f8f8cSSatish Balay else low = t; \ 179a30f8f8cSSatish Balay } \ 180a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 181a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 182a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 183a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 184a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 185a30f8f8cSSatish Balay else *bap = value; \ 186a30f8f8cSSatish Balay goto b_noinsert; \ 187a30f8f8cSSatish Balay } \ 188a30f8f8cSSatish Balay } \ 189a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19029bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 191a30f8f8cSSatish Balay if (nrow >= rmax) { \ 192a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 193a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 194a30f8f8cSSatish Balay MatScalar *new_a; \ 195a30f8f8cSSatish Balay \ 19629bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 197a30f8f8cSSatish Balay \ 198a30f8f8cSSatish Balay /* malloc new storage space */ \ 199a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 200a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 201a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 202a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 203a30f8f8cSSatish Balay \ 204a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 205a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 206a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 207a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 208a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 213a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay /* free up old matrix storage */ \ 215a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 219a30f8f8cSSatish Balay } \ 220a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 221a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 222a30f8f8cSSatish Balay \ 223a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 224a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 225a30f8f8cSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 226a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 227a30f8f8cSSatish Balay b->reallocs++; \ 228a30f8f8cSSatish Balay b->nz++; \ 229a30f8f8cSSatish Balay } \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 232a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 233a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 234a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 235a30f8f8cSSatish Balay } \ 236a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 237a30f8f8cSSatish Balay rp[_i] = bcol; \ 238a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 239a30f8f8cSSatish Balay b_noinsert:; \ 240a30f8f8cSSatish Balay bilen[brow] = nrow; \ 241a30f8f8cSSatish Balay } 242a30f8f8cSSatish Balay #endif 243a30f8f8cSSatish Balay 244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 245a30f8f8cSSatish Balay #undef __FUNC__ 246a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ"></a>*/"MatSetValues_MPISBAIJ" 247a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 248a30f8f8cSSatish Balay { 249a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 250a30f8f8cSSatish Balay int ierr,i,N = m*n; 251a30f8f8cSSatish Balay MatScalar *vsingle; 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay PetscFunctionBegin; 254a30f8f8cSSatish Balay if (N > b->setvalueslen) { 255a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 256a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 257a30f8f8cSSatish Balay b->setvalueslen = N; 258a30f8f8cSSatish Balay } 259a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 260a30f8f8cSSatish Balay 261a30f8f8cSSatish Balay for (i=0; i<N; i++) { 262a30f8f8cSSatish Balay vsingle[i] = v[i]; 263a30f8f8cSSatish Balay } 264a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 265a30f8f8cSSatish Balay PetscFunctionReturn(0); 266a30f8f8cSSatish Balay } 267a30f8f8cSSatish Balay 268a30f8f8cSSatish Balay #undef __FUNC__ 269a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 270a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 271a30f8f8cSSatish Balay { 272a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 273a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 274a30f8f8cSSatish Balay MatScalar *vsingle; 275a30f8f8cSSatish Balay 276a30f8f8cSSatish Balay PetscFunctionBegin; 277a30f8f8cSSatish Balay if (N > b->setvalueslen) { 278a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 279a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 280a30f8f8cSSatish Balay b->setvalueslen = N; 281a30f8f8cSSatish Balay } 282a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 283a30f8f8cSSatish Balay for (i=0; i<N; i++) { 284a30f8f8cSSatish Balay vsingle[i] = v[i]; 285a30f8f8cSSatish Balay } 286a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 287a30f8f8cSSatish Balay PetscFunctionReturn(0); 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay 290a30f8f8cSSatish Balay #undef __FUNC__ 291a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT"></a>*/"MatSetValues_MPISBAIJ_HT" 292a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 293a30f8f8cSSatish Balay { 294a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 295a30f8f8cSSatish Balay int ierr,i,N = m*n; 296a30f8f8cSSatish Balay MatScalar *vsingle; 297a30f8f8cSSatish Balay 298a30f8f8cSSatish Balay PetscFunctionBegin; 29929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3004d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 301a30f8f8cSSatish Balay } 302a30f8f8cSSatish Balay 303a30f8f8cSSatish Balay #undef __FUNC__ 304a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ_HT"></a>*/"MatSetValuesBlocked_MPISBAIJ_HT" 305a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 306a30f8f8cSSatish Balay { 307a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 308a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 309a30f8f8cSSatish Balay MatScalar *vsingle; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay PetscFunctionBegin; 31229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3134d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay #endif 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 318a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 319a30f8f8cSSatish Balay */ 320a30f8f8cSSatish Balay #undef __FUNC__ 321a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPIBAIJ"></a>*/"MatSetValues_MPIBAIJ" 322a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 323a30f8f8cSSatish Balay { 324a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 325a30f8f8cSSatish Balay MatScalar value; 326*b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 327a30f8f8cSSatish Balay int ierr,i,j,row,col; 328*b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 329a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 330a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 331a30f8f8cSSatish Balay 332a30f8f8cSSatish Balay /* Some Variables required in the macro */ 333a30f8f8cSSatish Balay Mat A = baij->A; 334a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 335a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 336a30f8f8cSSatish Balay MatScalar *aa=a->a; 337a30f8f8cSSatish Balay 338a30f8f8cSSatish Balay Mat B = baij->B; 339a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 340a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 341a30f8f8cSSatish Balay MatScalar *ba=b->a; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 344a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 345a30f8f8cSSatish Balay MatScalar *ap,*bap; 346a30f8f8cSSatish Balay 347a30f8f8cSSatish Balay /* for stash */ 348f65c83cfSHong Zhang int n_loc, *in_loc=0; 349f65c83cfSHong Zhang MatScalar *v_loc=0; 350a30f8f8cSSatish Balay 351a30f8f8cSSatish Balay PetscFunctionBegin; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay if(!baij->donotstash){ 354a30f8f8cSSatish Balay in_loc = (int*)PetscMalloc(n*sizeof(int));CHKPTRQ(in_loc); 355a30f8f8cSSatish Balay v_loc = (MatScalar*)PetscMalloc(n*sizeof(MatScalar));CHKPTRQ(v_loc); 356a30f8f8cSSatish Balay } 357a30f8f8cSSatish Balay 358a30f8f8cSSatish Balay for (i=0; i<m; i++) { 359a30f8f8cSSatish Balay if (im[i] < 0) continue; 360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 361*b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 362a30f8f8cSSatish Balay #endif 363a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 364a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 365a30f8f8cSSatish Balay for (j=0; j<n; j++) { 366f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 367a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 368a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 369a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 370a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 371a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 372a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 373a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 374a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 376*b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 377a30f8f8cSSatish Balay #endif 378a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 379a30f8f8cSSatish Balay if (mat->was_assembled) { 380a30f8f8cSSatish Balay if (!baij->colmap) { 381a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 384a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 385a30f8f8cSSatish Balay col = col - 1 + in[j]%bs; 386a30f8f8cSSatish Balay #else 387a30f8f8cSSatish Balay col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 388a30f8f8cSSatish Balay #endif 389a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 390a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 391a30f8f8cSSatish Balay col = in[j]; 392a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 393a30f8f8cSSatish Balay B = baij->B; 394a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 395a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 396a30f8f8cSSatish Balay ba=b->a; 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } else col = in[j]; 399a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 400a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 401a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay } else { /* off processor entry */ 405a30f8f8cSSatish Balay if (!baij->donotstash) { 406a30f8f8cSSatish Balay n_loc = 0; 407a30f8f8cSSatish Balay for (j=0; j<n; j++){ 408f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 409a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 410a30f8f8cSSatish Balay if (roworiented) { 411a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 412a30f8f8cSSatish Balay } else { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 414a30f8f8cSSatish Balay } 415a30f8f8cSSatish Balay n_loc++; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay 422a30f8f8cSSatish Balay if(!baij->donotstash){ 423a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 424a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 425a30f8f8cSSatish Balay } 426a30f8f8cSSatish Balay PetscFunctionReturn(0); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay 429a30f8f8cSSatish Balay #undef __FUNC__ 430a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 431a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 432a30f8f8cSSatish Balay { 433a30f8f8cSSatish Balay PetscFunctionBegin; 43429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 436a30f8f8cSSatish Balay } 437a30f8f8cSSatish Balay 438a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 439a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 440a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 441a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 442a30f8f8cSSatish Balay #undef __FUNC__ 443a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT_MatScalar"></a>*/"MatSetValues_MPISBAIJ_HT_MatScalar" 444a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 445a30f8f8cSSatish Balay { 446a30f8f8cSSatish Balay PetscFunctionBegin; 44729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 44896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 449a30f8f8cSSatish Balay } 450a30f8f8cSSatish Balay 451a30f8f8cSSatish Balay #undef __FUNC__ 452a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 453a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 454a30f8f8cSSatish Balay { 455a30f8f8cSSatish Balay PetscFunctionBegin; 45629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 458a30f8f8cSSatish Balay } 459a30f8f8cSSatish Balay 460a30f8f8cSSatish Balay #undef __FUNC__ 461a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetValues_MPISBAIJ" 462a30f8f8cSSatish Balay int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 463a30f8f8cSSatish Balay { 464f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 465a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 466a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 467a30f8f8cSSatish Balay 468a30f8f8cSSatish Balay PetscFunctionBegin; 469a30f8f8cSSatish Balay for (i=0; i<m; i++) { 47029bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 471*b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 472a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 473a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 474a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47529bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 476*b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 477a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 478a30f8f8cSSatish Balay col = idxn[j] - bscstart; 479c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 480a30f8f8cSSatish Balay } else { 481a30f8f8cSSatish Balay if (!baij->colmap) { 482a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 483a30f8f8cSSatish Balay } 484a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 485a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 486a30f8f8cSSatish Balay data --; 487a30f8f8cSSatish Balay #else 488a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 489a30f8f8cSSatish Balay #endif 490a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 491a30f8f8cSSatish Balay else { 492a30f8f8cSSatish Balay col = data + idxn[j]%bs; 493c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay } else { 49829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 499a30f8f8cSSatish Balay } 500a30f8f8cSSatish Balay } 501a30f8f8cSSatish Balay PetscFunctionReturn(0); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay 504a30f8f8cSSatish Balay #undef __FUNC__ 505a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatNorm_MPISBAIJ" 506a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 507a30f8f8cSSatish Balay { 508a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 509bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 510bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 511a30f8f8cSSatish Balay int ierr; 512a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 513a30f8f8cSSatish Balay 514a30f8f8cSSatish Balay PetscFunctionBegin; 515a30f8f8cSSatish Balay if (baij->size == 1) { 516a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 517a30f8f8cSSatish Balay } else { 518a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 519ee237329SHong Zhang lnorm2 = (double*)PetscMalloc(2*sizeof(double));CHKPTRQ(lnorm2); 520a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 521a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 522a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 523a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 524a30f8f8cSSatish Balay /* 525a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 526a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 527a30f8f8cSSatish Balay */ 528a30f8f8cSSatish Balay ierr = MPI_Allreduce(lnorm2,&sum,2,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 529a30f8f8cSSatish Balay /* 530a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 531a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 534a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 535a30f8f8cSSatish Balay } else { 53629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay PetscFunctionReturn(0); 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay 542a30f8f8cSSatish Balay /* 543a30f8f8cSSatish Balay Creates the hash table, and sets the table 544a30f8f8cSSatish Balay This table is created only once. 545a30f8f8cSSatish Balay If new entried need to be added to the matrix 546a30f8f8cSSatish Balay then the hash table has to be destroyed and 547a30f8f8cSSatish Balay recreated. 548a30f8f8cSSatish Balay */ 549a30f8f8cSSatish Balay #undef __FUNC__ 550a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateHashTable_MPISBAIJ_Private" 551a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 552a30f8f8cSSatish Balay { 553a30f8f8cSSatish Balay PetscFunctionBegin; 55429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 556a30f8f8cSSatish Balay } 557a30f8f8cSSatish Balay 558a30f8f8cSSatish Balay #undef __FUNC__ 559a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyBegin_MPISBAIJ" 560a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 561a30f8f8cSSatish Balay { 562a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 563a30f8f8cSSatish Balay int ierr,nstash,reallocs; 564a30f8f8cSSatish Balay InsertMode addv; 565a30f8f8cSSatish Balay 566a30f8f8cSSatish Balay PetscFunctionBegin; 567a30f8f8cSSatish Balay if (baij->donotstash) { 568a30f8f8cSSatish Balay PetscFunctionReturn(0); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay 571a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 572a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 573a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 577a30f8f8cSSatish Balay 578a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 579a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 580a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 581a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 582a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 583a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 584a30f8f8cSSatish Balay PetscFunctionReturn(0); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay 587a30f8f8cSSatish Balay #undef __FUNC__ 588a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyEnd_MPISBAIJ" 589a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 590a30f8f8cSSatish Balay { 591a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 592a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 593a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 594a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 595a30f8f8cSSatish Balay int *row,*col,other_disassembled; 596a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 597a30f8f8cSSatish Balay MatScalar *val; 598a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 599a30f8f8cSSatish Balay int rank; 600a30f8f8cSSatish Balay 601a30f8f8cSSatish Balay PetscFunctionBegin; 602a30f8f8cSSatish Balay /* remove 2 line below later */ 603a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRQ(ierr); 604a30f8f8cSSatish Balay 605a30f8f8cSSatish Balay if (!baij->donotstash) { 606a30f8f8cSSatish Balay while (1) { 607a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 608a30f8f8cSSatish Balay /* 609a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 610a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 611a30f8f8cSSatish Balay */ 612a30f8f8cSSatish Balay if (!flg) break; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay for (i=0; i<n;) { 615a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 616a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 617a30f8f8cSSatish Balay if (j < n) ncols = j-i; 618a30f8f8cSSatish Balay else ncols = n-i; 619a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 620a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 621a30f8f8cSSatish Balay i = j; 622a30f8f8cSSatish Balay } 623a30f8f8cSSatish Balay } 624a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 625a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 626a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 627a30f8f8cSSatish Balay restore the original flags */ 628a30f8f8cSSatish Balay r1 = baij->roworiented; 629a30f8f8cSSatish Balay r2 = a->roworiented; 630a30f8f8cSSatish Balay r3 = b->roworiented; 631a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 632a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 633a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 634a30f8f8cSSatish Balay while (1) { 635a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 636a30f8f8cSSatish Balay if (!flg) break; 637a30f8f8cSSatish Balay 638a30f8f8cSSatish Balay for (i=0; i<n;) { 639a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 640a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 641a30f8f8cSSatish Balay if (j < n) ncols = j-i; 642a30f8f8cSSatish Balay else ncols = n-i; 643a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 644a30f8f8cSSatish Balay i = j; 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay } 647a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 648a30f8f8cSSatish Balay baij->roworiented = r1; 649a30f8f8cSSatish Balay a->roworiented = r2; 650a30f8f8cSSatish Balay b->roworiented = r3; 651a30f8f8cSSatish Balay } 652a30f8f8cSSatish Balay 653a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 654a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 657a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 658a30f8f8cSSatish Balay /* 659a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 660a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 661a30f8f8cSSatish Balay */ 662a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 663a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 664a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 665c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay 669a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 670a30f8f8cSSatish Balay ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); 671a30f8f8cSSatish Balay } 672a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 673a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 676a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 677a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 678a30f8f8cSSatish Balay baij->ht_total_ct = 0; 679a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay #endif 682a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 683c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 684a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 685a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay 688a30f8f8cSSatish Balay if (baij->rowvalues) { 689a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 690a30f8f8cSSatish Balay baij->rowvalues = 0; 691a30f8f8cSSatish Balay } 692a30f8f8cSSatish Balay PetscFunctionReturn(0); 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay 695a30f8f8cSSatish Balay #undef __FUNC__ 696a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ_ASCIIorDraworSocket" 697a30f8f8cSSatish Balay static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 698a30f8f8cSSatish Balay { 699a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 700a30f8f8cSSatish Balay int ierr,format,bs = baij->bs,size = baij->size,rank = baij->rank; 701a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 70265d70643SHong Zhang Viewer sviewer; 703a30f8f8cSSatish Balay 704a30f8f8cSSatish Balay PetscFunctionBegin; 705a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 706a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 707a30f8f8cSSatish Balay if (isascii) { 708a30f8f8cSSatish Balay ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 709a30f8f8cSSatish Balay if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 710a30f8f8cSSatish Balay MatInfo info; 711a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 713a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 714*b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 715a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 716a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 719a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = ViewerFlush(viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 722a30f8f8cSSatish Balay PetscFunctionReturn(0); 723a30f8f8cSSatish Balay } else if (format == VIEWER_FORMAT_ASCII_INFO) { 724a30f8f8cSSatish Balay ierr = ViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 725a30f8f8cSSatish Balay PetscFunctionReturn(0); 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay } 728a30f8f8cSSatish Balay 729a30f8f8cSSatish Balay if (isdraw) { 730a30f8f8cSSatish Balay Draw draw; 731a30f8f8cSSatish Balay PetscTruth isnull; 732a30f8f8cSSatish Balay ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 733a30f8f8cSSatish Balay ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 734a30f8f8cSSatish Balay } 735a30f8f8cSSatish Balay 736a30f8f8cSSatish Balay if (size == 1) { 737a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 738a30f8f8cSSatish Balay } else { 739a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 740a30f8f8cSSatish Balay Mat A; 74165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 743*b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 744a30f8f8cSSatish Balay MatScalar *a; 745a30f8f8cSSatish Balay 746a30f8f8cSSatish Balay if (!rank) { 747bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 748a30f8f8cSSatish Balay } else { 749f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 750a30f8f8cSSatish Balay } 751a30f8f8cSSatish Balay PLogObjectParent(mat,A); 752a30f8f8cSSatish Balay 753a30f8f8cSSatish Balay /* copy over the A part */ 75465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 755a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 756a30f8f8cSSatish Balay rvals = (int*)PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 757a30f8f8cSSatish Balay 758a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 759a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 760a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 761a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 762a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 763a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 764a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 765a30f8f8cSSatish Balay col++; a += bs; 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay /* copy over the B part */ 77065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 772a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 773a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 774a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 775a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 776a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 777a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 778a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 779a30f8f8cSSatish Balay col++; a += bs; 780a30f8f8cSSatish Balay } 781a30f8f8cSSatish Balay } 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 784a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 786a30f8f8cSSatish Balay /* 787a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 788a30f8f8cSSatish Balay synchronized across all processors that share the Draw object 789a30f8f8cSSatish Balay */ 790a30f8f8cSSatish Balay ierr = ViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79165d70643SHong Zhang if (!rank) { 792a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 793a30f8f8cSSatish Balay } 79465d70643SHong Zhang ierr = ViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 795a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 796a30f8f8cSSatish Balay } 797a30f8f8cSSatish Balay PetscFunctionReturn(0); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay 800a30f8f8cSSatish Balay #undef __FUNC__ 801a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ" 802a30f8f8cSSatish Balay int MatView_MPISBAIJ(Mat mat,Viewer viewer) 803a30f8f8cSSatish Balay { 804a30f8f8cSSatish Balay int ierr; 805a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 806a30f8f8cSSatish Balay 807a30f8f8cSSatish Balay PetscFunctionBegin; 808a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 809a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 810a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,SOCKET_VIEWER,&issocket);CHKERRQ(ierr); 811a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,BINARY_VIEWER,&isbinary);CHKERRQ(ierr); 812a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 813a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 814a30f8f8cSSatish Balay } else { 81529bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 816a30f8f8cSSatish Balay } 817a30f8f8cSSatish Balay PetscFunctionReturn(0); 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay 820a30f8f8cSSatish Balay #undef __FUNC__ 821a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDestroy_MPISBAIJ" 822a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 823a30f8f8cSSatish Balay { 824a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 825a30f8f8cSSatish Balay int ierr; 826a30f8f8cSSatish Balay 827a30f8f8cSSatish Balay PetscFunctionBegin; 828a30f8f8cSSatish Balay 829a30f8f8cSSatish Balay if (mat->mapping) { 830a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 831a30f8f8cSSatish Balay } 832a30f8f8cSSatish Balay if (mat->bmapping) { 833a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay if (mat->rmap) { 836a30f8f8cSSatish Balay ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 837a30f8f8cSSatish Balay } 838a30f8f8cSSatish Balay if (mat->cmap) { 839a30f8f8cSSatish Balay ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 840a30f8f8cSSatish Balay } 841a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 842*b5df2d14SHong Zhang PLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 843a30f8f8cSSatish Balay #endif 844a30f8f8cSSatish Balay 845a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 846a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 847a30f8f8cSSatish Balay 848a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 849a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 850a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 851a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 852a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 853a30f8f8cSSatish Balay #else 854a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 855a30f8f8cSSatish Balay #endif 856a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 857a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 858a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 859a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 860a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 861a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 862a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 863a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 864a30f8f8cSSatish Balay #endif 865a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 866a30f8f8cSSatish Balay PLogObjectDestroy(mat); 867a30f8f8cSSatish Balay PetscHeaderDestroy(mat); 868a30f8f8cSSatish Balay PetscFunctionReturn(0); 869a30f8f8cSSatish Balay } 870a30f8f8cSSatish Balay 871a30f8f8cSSatish Balay #undef __FUNC__ 872a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMult_MPISBAIJ" 873a30f8f8cSSatish Balay int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 874a30f8f8cSSatish Balay { 875a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 876a30f8f8cSSatish Balay int ierr,nt; 877a30f8f8cSSatish Balay 878a30f8f8cSSatish Balay PetscFunctionBegin; 879a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 880*b5df2d14SHong Zhang if (nt != A->n) { 88129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 882a30f8f8cSSatish Balay } 883a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 884*b5df2d14SHong Zhang if (nt != A->m) { 88529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 886a30f8f8cSSatish Balay } 88765d70643SHong Zhang 888b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 889b941877fSHong Zhang /* do diagonal part */ 890b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 891b941877fSHong Zhang /* do supperdiagonal part */ 892b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 893b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 894b941877fSHong Zhang /* do subdiagonal part */ 895b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 896b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 897b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 89865d70643SHong Zhang 899a30f8f8cSSatish Balay PetscFunctionReturn(0); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 902a30f8f8cSSatish Balay #undef __FUNC__ 903a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultAdd_MPISBAIJ" 904a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 905a30f8f8cSSatish Balay { 906de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 907aa482183SHong Zhang int ierr; 908a30f8f8cSSatish Balay 909a30f8f8cSSatish Balay PetscFunctionBegin; 910b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 911b941877fSHong Zhang /* do diagonal part */ 912b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 913b941877fSHong Zhang /* do supperdiagonal part */ 914b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 915de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 916de8b6608SHong Zhang 917b941877fSHong Zhang /* do subdiagonal part */ 918a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 919a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 920a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 921aa482183SHong Zhang 922a30f8f8cSSatish Balay PetscFunctionReturn(0); 923a30f8f8cSSatish Balay } 924a30f8f8cSSatish Balay 925a30f8f8cSSatish Balay #undef __FUNC__ 926a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTranspose_MPISBAIJ" 927a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 928a30f8f8cSSatish Balay { 929a30f8f8cSSatish Balay PetscFunctionBegin; 93029bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 93196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 932a30f8f8cSSatish Balay } 933a30f8f8cSSatish Balay 934a30f8f8cSSatish Balay #undef __FUNC__ 935a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTransposeAdd_MPISBAIJ" 936a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 937a30f8f8cSSatish Balay { 938a30f8f8cSSatish Balay PetscFunctionBegin; 93929bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 94096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 941a30f8f8cSSatish Balay } 942a30f8f8cSSatish Balay 943a30f8f8cSSatish Balay /* 944a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 945a30f8f8cSSatish Balay diagonal block 946a30f8f8cSSatish Balay */ 947a30f8f8cSSatish Balay #undef __FUNC__ 948a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonal_MPISBAIJ" 949a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 950a30f8f8cSSatish Balay { 951a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 952a30f8f8cSSatish Balay int ierr; 953a30f8f8cSSatish Balay 954a30f8f8cSSatish Balay PetscFunctionBegin; 95529bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 956a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 957a30f8f8cSSatish Balay PetscFunctionReturn(0); 958a30f8f8cSSatish Balay } 959a30f8f8cSSatish Balay 960a30f8f8cSSatish Balay #undef __FUNC__ 961a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatScale_MPISBAIJ" 962a30f8f8cSSatish Balay int MatScale_MPISBAIJ(Scalar *aa,Mat A) 963a30f8f8cSSatish Balay { 964a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965a30f8f8cSSatish Balay int ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 969a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 970a30f8f8cSSatish Balay PetscFunctionReturn(0); 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay 973a30f8f8cSSatish Balay #undef __FUNC__ 974a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetOwnershipRange_MPISBAIJ" 975a30f8f8cSSatish Balay int MatGetOwnershipRange_MPISBAIJ(Mat matin,int *m,int *n) 976a30f8f8cSSatish Balay { 977a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 978a30f8f8cSSatish Balay 979a30f8f8cSSatish Balay PetscFunctionBegin; 980a30f8f8cSSatish Balay if (m) *m = mat->rstart*mat->bs; 981a30f8f8cSSatish Balay if (n) *n = mat->rend*mat->bs; 982a30f8f8cSSatish Balay PetscFunctionReturn(0); 983a30f8f8cSSatish Balay } 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay #undef __FUNC__ 986a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetRow_MPISBAIJ" 987a30f8f8cSSatish Balay int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 988a30f8f8cSSatish Balay { 989a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 990a30f8f8cSSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 991a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 992a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 993a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 994a30f8f8cSSatish Balay 995a30f8f8cSSatish Balay PetscFunctionBegin; 99629bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 997a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 998a30f8f8cSSatish Balay 999a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1000a30f8f8cSSatish Balay /* 1001a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1002a30f8f8cSSatish Balay */ 1003a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1004a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1005a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1006a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1007a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1008a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1009a30f8f8cSSatish Balay } 1010a30f8f8cSSatish Balay mat->rowvalues = (Scalar*)PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1011a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1012a30f8f8cSSatish Balay } 1013a30f8f8cSSatish Balay 101429bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1015a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1016a30f8f8cSSatish Balay 1017a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1018a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1019a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1020a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1021a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1022a30f8f8cSSatish Balay nztot = nzA + nzB; 1023a30f8f8cSSatish Balay 1024a30f8f8cSSatish Balay cmap = mat->garray; 1025a30f8f8cSSatish Balay if (v || idx) { 1026a30f8f8cSSatish Balay if (nztot) { 1027a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1028a30f8f8cSSatish Balay int imark = -1; 1029a30f8f8cSSatish Balay if (v) { 1030a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1031a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1032a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1033a30f8f8cSSatish Balay else break; 1034a30f8f8cSSatish Balay } 1035a30f8f8cSSatish Balay imark = i; 1036a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1037a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1038a30f8f8cSSatish Balay } 1039a30f8f8cSSatish Balay if (idx) { 1040a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1041a30f8f8cSSatish Balay if (imark > -1) { 1042a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1043a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1044a30f8f8cSSatish Balay } 1045a30f8f8cSSatish Balay } else { 1046a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1047a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1048a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1049a30f8f8cSSatish Balay else break; 1050a30f8f8cSSatish Balay } 1051a30f8f8cSSatish Balay imark = i; 1052a30f8f8cSSatish Balay } 1053a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1054a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1055a30f8f8cSSatish Balay } 1056a30f8f8cSSatish Balay } else { 1057a30f8f8cSSatish Balay if (idx) *idx = 0; 1058a30f8f8cSSatish Balay if (v) *v = 0; 1059a30f8f8cSSatish Balay } 1060a30f8f8cSSatish Balay } 1061a30f8f8cSSatish Balay *nz = nztot; 1062a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1063a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1064a30f8f8cSSatish Balay PetscFunctionReturn(0); 1065a30f8f8cSSatish Balay } 1066a30f8f8cSSatish Balay 1067a30f8f8cSSatish Balay #undef __FUNC__ 1068a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatRestoreRow_MPISBAIJ" 1069a30f8f8cSSatish Balay int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1070a30f8f8cSSatish Balay { 1071a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1072a30f8f8cSSatish Balay 1073a30f8f8cSSatish Balay PetscFunctionBegin; 1074a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 107529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1076a30f8f8cSSatish Balay } 1077a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1078a30f8f8cSSatish Balay PetscFunctionReturn(0); 1079a30f8f8cSSatish Balay } 1080a30f8f8cSSatish Balay 1081a30f8f8cSSatish Balay #undef __FUNC__ 1082a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetBlockSize_MPISBAIJ" 1083a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1084a30f8f8cSSatish Balay { 1085a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1086a30f8f8cSSatish Balay 1087a30f8f8cSSatish Balay PetscFunctionBegin; 1088a30f8f8cSSatish Balay *bs = baij->bs; 1089a30f8f8cSSatish Balay PetscFunctionReturn(0); 1090a30f8f8cSSatish Balay } 1091a30f8f8cSSatish Balay 1092a30f8f8cSSatish Balay #undef __FUNC__ 1093a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroEntries_MPISBAIJ" 1094a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1095a30f8f8cSSatish Balay { 1096a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1097a30f8f8cSSatish Balay int ierr; 1098a30f8f8cSSatish Balay 1099a30f8f8cSSatish Balay PetscFunctionBegin; 1100a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1101a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1102a30f8f8cSSatish Balay PetscFunctionReturn(0); 1103a30f8f8cSSatish Balay } 1104a30f8f8cSSatish Balay 1105a30f8f8cSSatish Balay #undef __FUNC__ 1106a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetInfo_MPISBAIJ" 1107a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1108a30f8f8cSSatish Balay { 1109a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1110a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1111a30f8f8cSSatish Balay int ierr; 1112a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1113a30f8f8cSSatish Balay 1114a30f8f8cSSatish Balay PetscFunctionBegin; 1115a30f8f8cSSatish Balay info->block_size = (double)a->bs; 1116a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1117a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1118a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1119a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1120a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1121a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1122a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1123a30f8f8cSSatish Balay info->nz_used = isend[0]; 1124a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1125a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1126a30f8f8cSSatish Balay info->memory = isend[3]; 1127a30f8f8cSSatish Balay info->mallocs = isend[4]; 1128a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1129a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 1130a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1131a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1132a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1133a30f8f8cSSatish Balay info->memory = irecv[3]; 1134a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1135a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1136a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1138a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1139a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1140a30f8f8cSSatish Balay info->memory = irecv[3]; 1141a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1142a30f8f8cSSatish Balay } else { 114329bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1144a30f8f8cSSatish Balay } 1145*b5df2d14SHong Zhang info->rows_global = (double)A->M; 1146*b5df2d14SHong Zhang info->columns_global = (double)A->N; 1147*b5df2d14SHong Zhang info->rows_local = (double)A->m; 1148*b5df2d14SHong Zhang info->columns_local = (double)A->N; 1149a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1150a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1151a30f8f8cSSatish Balay info->factor_mallocs = 0; 1152a30f8f8cSSatish Balay PetscFunctionReturn(0); 1153a30f8f8cSSatish Balay } 1154a30f8f8cSSatish Balay 1155a30f8f8cSSatish Balay #undef __FUNC__ 1156a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetOption_MPISBAIJ" 1157a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1158a30f8f8cSSatish Balay { 1159a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1160a30f8f8cSSatish Balay int ierr; 1161a30f8f8cSSatish Balay 1162a30f8f8cSSatish Balay PetscFunctionBegin; 1163a30f8f8cSSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 1164a30f8f8cSSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 1165a30f8f8cSSatish Balay op == MAT_COLUMNS_UNSORTED || 1166a30f8f8cSSatish Balay op == MAT_COLUMNS_SORTED || 1167a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 1168a30f8f8cSSatish Balay op == MAT_KEEP_ZEROED_ROWS || 1169a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 1170a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1171a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1172a30f8f8cSSatish Balay } else if (op == MAT_ROW_ORIENTED) { 1173a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1174a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1176a30f8f8cSSatish Balay } else if (op == MAT_ROWS_SORTED || 1177a30f8f8cSSatish Balay op == MAT_ROWS_UNSORTED || 1178a30f8f8cSSatish Balay op == MAT_SYMMETRIC || 1179a30f8f8cSSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1180a30f8f8cSSatish Balay op == MAT_YES_NEW_DIAGONALS || 1181a30f8f8cSSatish Balay op == MAT_USE_HASH_TABLE) { 1182a30f8f8cSSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1183a30f8f8cSSatish Balay } else if (op == MAT_COLUMN_ORIENTED) { 1184a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1185a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1186a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1187a30f8f8cSSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 1188a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1189a30f8f8cSSatish Balay } else if (op == MAT_NO_NEW_DIAGONALS) { 119029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1191a30f8f8cSSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1192a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1193a30f8f8cSSatish Balay } else { 119429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1195a30f8f8cSSatish Balay } 1196a30f8f8cSSatish Balay PetscFunctionReturn(0); 1197a30f8f8cSSatish Balay } 1198a30f8f8cSSatish Balay 1199a30f8f8cSSatish Balay #undef __FUNC__ 1200a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatTranspose_MPISBAIJ(" 1201a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1202a30f8f8cSSatish Balay { 1203a30f8f8cSSatish Balay PetscFunctionBegin; 120429bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. MatTranspose() should not be called"); 120596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1206a30f8f8cSSatish Balay } 1207a30f8f8cSSatish Balay 1208a30f8f8cSSatish Balay #undef __FUNC__ 1209a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDiagonalScale_MPISBAIJ" 1210a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1211a30f8f8cSSatish Balay { 1212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1213a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1214a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1215a30f8f8cSSatish Balay 1216a30f8f8cSSatish Balay PetscFunctionBegin; 1217a30f8f8cSSatish Balay if (ll != rr) { 121829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1219a30f8f8cSSatish Balay } 1220a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1221a30f8f8cSSatish Balay if (rr) { 1222a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 122329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1224a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1225a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1226a30f8f8cSSatish Balay /*} if (ll) { */ 1227a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 122829bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1229a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1230a30f8f8cSSatish Balay /* } */ 1231a30f8f8cSSatish Balay /* scale the diagonal block */ 1232a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1233a30f8f8cSSatish Balay 1234a30f8f8cSSatish Balay /* if (rr) { */ 1235a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1236a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1237a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1238a30f8f8cSSatish Balay } 1239a30f8f8cSSatish Balay 1240a30f8f8cSSatish Balay PetscFunctionReturn(0); 1241a30f8f8cSSatish Balay } 1242a30f8f8cSSatish Balay 1243a30f8f8cSSatish Balay #undef __FUNC__ 1244a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroRows_MPISBAIJ" 1245a30f8f8cSSatish Balay int MatZeroRows_MPISBAIJ(Mat A,IS is,Scalar *diag) 1246a30f8f8cSSatish Balay { 1247a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1248a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 1249a30f8f8cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 1250a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1251a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1252a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1253a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1254a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1255a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1256a30f8f8cSSatish Balay IS istmp; 1257a30f8f8cSSatish Balay 1258a30f8f8cSSatish Balay PetscFunctionBegin; 1259a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1260a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1261a30f8f8cSSatish Balay 1262a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 1263a30f8f8cSSatish Balay nprocs = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(nprocs); 1264a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1265a30f8f8cSSatish Balay procs = nprocs + size; 1266a30f8f8cSSatish Balay owner = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 1267a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1268a30f8f8cSSatish Balay idx = rows[i]; 1269a30f8f8cSSatish Balay found = 0; 1270a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1271a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 1272a30f8f8cSSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 1273a30f8f8cSSatish Balay } 1274a30f8f8cSSatish Balay } 127529bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1276a30f8f8cSSatish Balay } 1277a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1278a30f8f8cSSatish Balay 1279a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 1280a30f8f8cSSatish Balay work = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(work); 1281a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1282a30f8f8cSSatish Balay nmax = work[rank]; 1283a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1284a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1285a30f8f8cSSatish Balay 1286a30f8f8cSSatish Balay /* post receives: */ 1287a30f8f8cSSatish Balay rvalues = (int*)PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1288a30f8f8cSSatish Balay recv_waits = (MPI_Request*)PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 1289a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1290a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1291a30f8f8cSSatish Balay } 1292a30f8f8cSSatish Balay 1293a30f8f8cSSatish Balay /* do sends: 1294a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1295a30f8f8cSSatish Balay the ith processor 1296a30f8f8cSSatish Balay */ 1297a30f8f8cSSatish Balay svalues = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(svalues); 1298a30f8f8cSSatish Balay send_waits = (MPI_Request*)PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 1299a30f8f8cSSatish Balay starts = (int*)PetscMalloc((size+1)*sizeof(int));CHKPTRQ(starts); 1300a30f8f8cSSatish Balay starts[0] = 0; 1301a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1302a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1303a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1304a30f8f8cSSatish Balay } 1305a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay 1307a30f8f8cSSatish Balay starts[0] = 0; 1308a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1309a30f8f8cSSatish Balay count = 0; 1310a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1311a30f8f8cSSatish Balay if (procs[i]) { 1312a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1313a30f8f8cSSatish Balay } 1314a30f8f8cSSatish Balay } 1315a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1316a30f8f8cSSatish Balay 1317a30f8f8cSSatish Balay base = owners[rank]*bs; 1318a30f8f8cSSatish Balay 1319a30f8f8cSSatish Balay /* wait on receives */ 1320a30f8f8cSSatish Balay lens = (int*)PetscMalloc(2*(nrecvs+1)*sizeof(int));CHKPTRQ(lens); 1321a30f8f8cSSatish Balay source = lens + nrecvs; 1322a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1323a30f8f8cSSatish Balay while (count) { 1324a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1325a30f8f8cSSatish Balay /* unpack receives into our local space */ 1326a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1327a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1328a30f8f8cSSatish Balay lens[imdex] = n; 1329a30f8f8cSSatish Balay slen += n; 1330a30f8f8cSSatish Balay count--; 1331a30f8f8cSSatish Balay } 1332a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay 1334a30f8f8cSSatish Balay /* move the data into the send scatter */ 1335a30f8f8cSSatish Balay lrows = (int*)PetscMalloc((slen+1)*sizeof(int));CHKPTRQ(lrows); 1336a30f8f8cSSatish Balay count = 0; 1337a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1338a30f8f8cSSatish Balay values = rvalues + i*nmax; 1339a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1340a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1341a30f8f8cSSatish Balay } 1342a30f8f8cSSatish Balay } 1343a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1344a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1345a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1346a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1347a30f8f8cSSatish Balay 1348a30f8f8cSSatish Balay /* actually zap the local rows */ 1349a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1350a30f8f8cSSatish Balay PLogObjectParent(A,istmp); 1351a30f8f8cSSatish Balay 1352a30f8f8cSSatish Balay /* 1353a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1354a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1355a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1356a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1357a30f8f8cSSatish Balay 1358a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1359a30f8f8cSSatish Balay */ 1360a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1361ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1363a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1364a30f8f8cSSatish Balay } else if (diag) { 1365a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1366a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 136729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1368a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1369a30f8f8cSSatish Balay } 1370a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1371a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1372a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1373a30f8f8cSSatish Balay } 1374a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1375a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1376a30f8f8cSSatish Balay } else { 1377a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1378a30f8f8cSSatish Balay } 1379a30f8f8cSSatish Balay 1380a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1381a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1382a30f8f8cSSatish Balay 1383a30f8f8cSSatish Balay /* wait on sends */ 1384a30f8f8cSSatish Balay if (nsends) { 1385a30f8f8cSSatish Balay send_status = (MPI_Status*)PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1386a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1387a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1388a30f8f8cSSatish Balay } 1389a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1390a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1391a30f8f8cSSatish Balay 1392a30f8f8cSSatish Balay PetscFunctionReturn(0); 1393a30f8f8cSSatish Balay } 1394a30f8f8cSSatish Balay 1395a30f8f8cSSatish Balay #undef __FUNC__ 1396a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatPrintHelp_MPISBAIJ" 1397a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1398a30f8f8cSSatish Balay { 1399a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1400a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1401a30f8f8cSSatish Balay static int called = 0; 1402a30f8f8cSSatish Balay int ierr; 1403a30f8f8cSSatish Balay 1404a30f8f8cSSatish Balay PetscFunctionBegin; 1405a30f8f8cSSatish Balay if (!a->rank) { 1406a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1407a30f8f8cSSatish Balay } 1408a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1409a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1410a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1411a30f8f8cSSatish Balay PetscFunctionReturn(0); 1412a30f8f8cSSatish Balay } 1413a30f8f8cSSatish Balay 1414a30f8f8cSSatish Balay #undef __FUNC__ 1415a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetUnfactored_MPISBAIJ" 1416a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1417a30f8f8cSSatish Balay { 1418f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1419a30f8f8cSSatish Balay int ierr; 1420a30f8f8cSSatish Balay 1421a30f8f8cSSatish Balay PetscFunctionBegin; 1422a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1423a30f8f8cSSatish Balay PetscFunctionReturn(0); 1424a30f8f8cSSatish Balay } 1425a30f8f8cSSatish Balay 1426a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1427a30f8f8cSSatish Balay 1428a30f8f8cSSatish Balay #undef __FUNC__ 1429a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatEqual_MPISBAIJ" 1430a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1431a30f8f8cSSatish Balay { 1432a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1433a30f8f8cSSatish Balay Mat a,b,c,d; 1434a30f8f8cSSatish Balay PetscTruth flg; 1435a30f8f8cSSatish Balay int ierr; 1436a30f8f8cSSatish Balay 1437a30f8f8cSSatish Balay PetscFunctionBegin; 1438*b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1439*b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1440a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1441a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1442a30f8f8cSSatish Balay 1443a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1444a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1445a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1446a30f8f8cSSatish Balay } 1447a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1448a30f8f8cSSatish Balay PetscFunctionReturn(0); 1449a30f8f8cSSatish Balay } 1450a30f8f8cSSatish Balay 1451a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1452a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1453a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1454a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1455a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1456a30f8f8cSSatish Balay MatMult_MPISBAIJ, 1457a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1458a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1459a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 1464a30f8f8cSSatish Balay 0, 1465a30f8f8cSSatish Balay 0, 1466a30f8f8cSSatish Balay 0, 1467a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1468a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1469a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1470a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1471a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1472a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1473a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1474a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1477a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1478a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483*b5df2d14SHong Zhang 0, 1484*b5df2d14SHong Zhang 0, 1485a30f8f8cSSatish Balay MatGetOwnershipRange_MPISBAIJ, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1497a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1498a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1501a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 151824d5174aSHong Zhang MatGetMaps_Petsc, 151924d5174aSHong Zhang 0, 152024d5174aSHong Zhang 0, 152124d5174aSHong Zhang 0, 152224d5174aSHong Zhang 0, 152324d5174aSHong Zhang 0, 152424d5174aSHong Zhang 0, 152524d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1526a30f8f8cSSatish Balay 1527a30f8f8cSSatish Balay 1528a30f8f8cSSatish Balay EXTERN_C_BEGIN 1529a30f8f8cSSatish Balay #undef __FUNC__ 1530a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonalBlock_MPISBAIJ" 1531a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1532a30f8f8cSSatish Balay { 1533a30f8f8cSSatish Balay PetscFunctionBegin; 1534a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1535a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1536a30f8f8cSSatish Balay PetscFunctionReturn(0); 1537a30f8f8cSSatish Balay } 1538a30f8f8cSSatish Balay EXTERN_C_END 1539a30f8f8cSSatish Balay 1540a30f8f8cSSatish Balay #undef __FUNC__ 1541*b5df2d14SHong Zhang #define __FUNC__ /*<a name=""></a>*/"MatCreate_MPISBAIJ" 1542*b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1543*b5df2d14SHong Zhang { 1544*b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1545*b5df2d14SHong Zhang int ierr,i; 1546*b5df2d14SHong Zhang PetscTruth flg; 1547*b5df2d14SHong Zhang 1548*b5df2d14SHong Zhang PetscFunctionBegin; 1549*b5df2d14SHong Zhang if (B->M != B->N || B->m != B->n){ /* N and n are not used after this */ 1550*b5df2d14SHong Zhang SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, set M=N and m=n"); 1551*b5df2d14SHong Zhang } 1552*b5df2d14SHong Zhang 1553*b5df2d14SHong Zhang B->data = (void*)(b = PetscNew(Mat_MPISBAIJ));CHKPTRQ(b); 1554*b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1555*b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1556*b5df2d14SHong Zhang 1557*b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1558*b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1559*b5df2d14SHong Zhang B->mapping = 0; 1560*b5df2d14SHong Zhang B->factor = 0; 1561*b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1562*b5df2d14SHong Zhang 1563*b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1564*b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1565*b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1566*b5df2d14SHong Zhang 1567*b5df2d14SHong Zhang ierr = PetscSplitOwnership(B->comm,&B->m,&B->M);CHKERRQ(ierr); 1568*b5df2d14SHong Zhang ierr = PetscSplitOwnership(B->comm,&B->n,&B->N);CHKERRQ(ierr); 1569*b5df2d14SHong Zhang 1570*b5df2d14SHong Zhang /* the information in the maps duplicates the information computed below, eventually 1571*b5df2d14SHong Zhang we should remove the duplicate information that is not contained in the maps */ 1572*b5df2d14SHong Zhang ierr = MapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1573*b5df2d14SHong Zhang ierr = MapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1574*b5df2d14SHong Zhang 1575*b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1576*b5df2d14SHong Zhang b->rowners = (int*)PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 1577*b5df2d14SHong Zhang PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1578*b5df2d14SHong Zhang 1579*b5df2d14SHong Zhang /* build cache for off array entries formed */ 1580*b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1581*b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1582*b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1583*b5df2d14SHong Zhang b->garray = PETSC_NULL; 1584*b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1585*b5df2d14SHong Zhang 1586*b5df2d14SHong Zhang #if defined(PEYSC_USE_MAT_SINGLE) 1587*b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 1588*b5df2d14SHong Zhang b->lensetvalues = 0; 1589*b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1590*b5df2d14SHong Zhang #endif 1591*b5df2d14SHong Zhang 1592*b5df2d14SHong Zhang /* stuff used in block assembly */ 1593*b5df2d14SHong Zhang b->barray = 0; 1594*b5df2d14SHong Zhang 1595*b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1596*b5df2d14SHong Zhang b->lvec = 0; 1597*b5df2d14SHong Zhang b->Mvctx = 0; 1598*b5df2d14SHong Zhang 1599*b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1600*b5df2d14SHong Zhang b->rowindices = 0; 1601*b5df2d14SHong Zhang b->rowvalues = 0; 1602*b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1603*b5df2d14SHong Zhang 1604*b5df2d14SHong Zhang /* hash table stuff */ 1605*b5df2d14SHong Zhang b->ht = 0; 1606*b5df2d14SHong Zhang b->hd = 0; 1607*b5df2d14SHong Zhang b->ht_size = 0; 1608*b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1609*b5df2d14SHong Zhang b->ht_fact = 0; 1610*b5df2d14SHong Zhang b->ht_total_ct = 0; 1611*b5df2d14SHong Zhang b->ht_insert_ct = 0; 1612*b5df2d14SHong Zhang 1613*b5df2d14SHong Zhang ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1614*b5df2d14SHong Zhang if (flg) { 1615*b5df2d14SHong Zhang double fact = 1.39; 1616*b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1617*b5df2d14SHong Zhang ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1618*b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1619*b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1620*b5df2d14SHong Zhang PLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1621*b5df2d14SHong Zhang } 1622*b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1623*b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1624*b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1625*b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1626*b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1627*b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1628*b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1629*b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1630*b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1631*b5df2d14SHong Zhang PetscFunctionReturn(0); 1632*b5df2d14SHong Zhang } 1633*b5df2d14SHong Zhang 1634*b5df2d14SHong Zhang #undef __FUNC__ 1635*b5df2d14SHong Zhang #define __FUNC__ /*<a name=""></a>*/"MatMPISBAIJSetPreallocation" 1636*b5df2d14SHong Zhang /*@C 1637*b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1638*b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1639*b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1640*b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1641*b5df2d14SHong Zhang 1642*b5df2d14SHong Zhang Collective on Mat 1643*b5df2d14SHong Zhang 1644*b5df2d14SHong Zhang Input Parameters: 1645*b5df2d14SHong Zhang + A - the matrix 1646*b5df2d14SHong Zhang . bs - size of blockk 1647*b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1648*b5df2d14SHong Zhang submatrix (same for all local rows) 1649*b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 1650*b5df2d14SHong Zhang of the in diagonal portion of the local (possibly different for each block 1651*b5df2d14SHong Zhang row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1652*b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1653*b5df2d14SHong Zhang submatrix (same for all local rows). 1654*b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1655*b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1656*b5df2d14SHong Zhang each block row) or PETSC_NULL. 1657*b5df2d14SHong Zhang 1658*b5df2d14SHong Zhang 1659*b5df2d14SHong Zhang Options Database Keys: 1660*b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1661*b5df2d14SHong Zhang block calculations (much slower) 1662*b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1663*b5df2d14SHong Zhang 1664*b5df2d14SHong Zhang Notes: 1665*b5df2d14SHong Zhang 1666*b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1667*b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1668*b5df2d14SHong Zhang 1669*b5df2d14SHong Zhang Storage Information: 1670*b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1671*b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1672*b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1673*b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1674*b5df2d14SHong Zhang 1675*b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1676*b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1677*b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1678*b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1679*b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1680*b5df2d14SHong Zhang 1681*b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1682*b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1683*b5df2d14SHong Zhang 1684*b5df2d14SHong Zhang .vb 1685*b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1686*b5df2d14SHong Zhang ------------------- 1687*b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1688*b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1689*b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1690*b5df2d14SHong Zhang ------------------- 1691*b5df2d14SHong Zhang .ve 1692*b5df2d14SHong Zhang 1693*b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1694*b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 1695*b5df2d14SHong Zhang o (off-diagonal) submatrix. Note that the d and the o submatrices are 1696*b5df2d14SHong Zhang stored simply in the MATSEQBAIJ format for compressed row storage. 1697*b5df2d14SHong Zhang 1698*b5df2d14SHong Zhang Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1699*b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1700*b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1701*b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1702*b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1703*b5df2d14SHong Zhang matrices. 1704*b5df2d14SHong Zhang 1705*b5df2d14SHong Zhang Level: intermediate 1706*b5df2d14SHong Zhang 1707*b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1708*b5df2d14SHong Zhang 1709*b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1710*b5df2d14SHong Zhang @*/ 1711*b5df2d14SHong Zhang 1712*b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1713*b5df2d14SHong Zhang { 1714*b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1715*b5df2d14SHong Zhang int ierr,i,mbs,Mbs=PETSC_DECIDE,size; 1716*b5df2d14SHong Zhang 1717*b5df2d14SHong Zhang PetscFunctionBegin; 1718*b5df2d14SHong Zhang ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1719*b5df2d14SHong Zhang 1720*b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1721*b5df2d14SHong Zhang if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than -2: value %d",d_nz); 1722*b5df2d14SHong Zhang if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than -2: value %d",o_nz); 1723*b5df2d14SHong Zhang if (d_nnz) { 1724*b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1725*b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1726*b5df2d14SHong Zhang } 1727*b5df2d14SHong Zhang } 1728*b5df2d14SHong Zhang if (o_nnz) { 1729*b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1730*b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1731*b5df2d14SHong Zhang } 1732*b5df2d14SHong Zhang } 1733*b5df2d14SHong Zhang 1734*b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1735*b5df2d14SHong Zhang mbs = B->m/bs; 1736*b5df2d14SHong Zhang Mbs = B->M/bs; 1737*b5df2d14SHong Zhang if (mbs*bs != B->m) { 1738*b5df2d14SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"No of local rows/cols must be divisible by blocksize"); 1739*b5df2d14SHong Zhang } 1740*b5df2d14SHong Zhang 1741*b5df2d14SHong Zhang b->bs = bs; 1742*b5df2d14SHong Zhang b->bs2 = bs*bs; 1743*b5df2d14SHong Zhang b->mbs = mbs; 1744*b5df2d14SHong Zhang b->nbs = mbs; 1745*b5df2d14SHong Zhang b->Mbs = Mbs; 1746*b5df2d14SHong Zhang b->Nbs = Mbs; 1747*b5df2d14SHong Zhang 1748*b5df2d14SHong Zhang b->cowners = b->rowners + b->size + 2; 1749*b5df2d14SHong Zhang b->rowners_bs = b->cowners + b->size + 2; 1750*b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1751*b5df2d14SHong Zhang b->rowners[0] = 0; 1752*b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1753*b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1754*b5df2d14SHong Zhang } 1755*b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1756*b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1757*b5df2d14SHong Zhang b->cstart = b->rstart; 1758*b5df2d14SHong Zhang b->cend = b->rend; 1759*b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1760*b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1761*b5df2d14SHong Zhang } 1762*b5df2d14SHong Zhang b->rstart_bs = b->rstart * bs; 1763*b5df2d14SHong Zhang b->rend_bs = b->rend * bs; 1764*b5df2d14SHong Zhang 1765*b5df2d14SHong Zhang b->cstart_bs = b->cstart * bs; 1766*b5df2d14SHong Zhang b->cend_bs = b->cend * bs; 1767*b5df2d14SHong Zhang 1768*b5df2d14SHong Zhang 1769*b5df2d14SHong Zhang if (d_nz == PETSC_DEFAULT) d_nz = 5; 1770*b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1771*b5df2d14SHong Zhang PLogObjectParent(B,b->A); 1772*b5df2d14SHong Zhang if (o_nz == PETSC_DEFAULT) o_nz = 0; 1773*b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1774*b5df2d14SHong Zhang PLogObjectParent(B,b->B); 1775*b5df2d14SHong Zhang 1776*b5df2d14SHong Zhang /* build cache for off array entries formed */ 1777*b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1778*b5df2d14SHong Zhang 1779*b5df2d14SHong Zhang PetscFunctionReturn(0); 1780*b5df2d14SHong Zhang } 1781*b5df2d14SHong Zhang 1782*b5df2d14SHong Zhang #undef __FUNC__ 1783a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateMPISBAIJ" 1784a30f8f8cSSatish Balay /*@C 1785a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1786a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1787a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1788a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1789a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1790a30f8f8cSSatish Balay 1791a30f8f8cSSatish Balay Collective on MPI_Comm 1792a30f8f8cSSatish Balay 1793a30f8f8cSSatish Balay Input Parameters: 1794a30f8f8cSSatish Balay + comm - MPI communicator 1795a30f8f8cSSatish Balay . bs - size of blockk 1796a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1797a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1798a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1799a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1800a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1801a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1802a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1803a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1804a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1805a30f8f8cSSatish Balay submatrix (same for all local rows) 1806a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1807a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1808a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1809a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1810a30f8f8cSSatish Balay submatrix (same for all local rows). 1811a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1812a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1813a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1814a30f8f8cSSatish Balay 1815a30f8f8cSSatish Balay Output Parameter: 1816a30f8f8cSSatish Balay . A - the matrix 1817a30f8f8cSSatish Balay 1818a30f8f8cSSatish Balay Options Database Keys: 1819a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1820a30f8f8cSSatish Balay block calculations (much slower) 1821a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1822a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1823a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1824a30f8f8cSSatish Balay 1825a30f8f8cSSatish Balay Notes: 1826a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1827a30f8f8cSSatish Balay (possibly both). 1828a30f8f8cSSatish Balay 1829a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1830a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1831a30f8f8cSSatish Balay 1832a30f8f8cSSatish Balay Storage Information: 1833a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1834a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1835a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1836a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1837a30f8f8cSSatish Balay 1838a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1839a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1840a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1841a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1842a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1843a30f8f8cSSatish Balay 1844a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1845a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1846a30f8f8cSSatish Balay 1847a30f8f8cSSatish Balay .vb 1848a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1849a30f8f8cSSatish Balay ------------------- 1850a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1851a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1852a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1853a30f8f8cSSatish Balay ------------------- 1854a30f8f8cSSatish Balay .ve 1855a30f8f8cSSatish Balay 1856a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1857a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1858a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1859a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1860a30f8f8cSSatish Balay 1861a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1862a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1863a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1864a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1865a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1866a30f8f8cSSatish Balay matrices. 1867a30f8f8cSSatish Balay 1868a30f8f8cSSatish Balay Level: intermediate 1869a30f8f8cSSatish Balay 1870a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1871a30f8f8cSSatish Balay 1872a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1873a30f8f8cSSatish Balay @*/ 1874a30f8f8cSSatish Balay 1875a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1876a30f8f8cSSatish Balay { 1877*b5df2d14SHong Zhang int ierr; 1878a30f8f8cSSatish Balay 1879a30f8f8cSSatish Balay PetscFunctionBegin; 1880*b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1881*b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1882*b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1883a30f8f8cSSatish Balay PetscFunctionReturn(0); 1884a30f8f8cSSatish Balay } 1885a30f8f8cSSatish Balay 1886a30f8f8cSSatish Balay 1887a30f8f8cSSatish Balay #undef __FUNC__ 1888a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDuplicate_MPISBAIJ" 1889a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1890a30f8f8cSSatish Balay { 1891a30f8f8cSSatish Balay Mat mat; 1892a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1893a30f8f8cSSatish Balay int ierr,len=0; 1894a30f8f8cSSatish Balay 1895a30f8f8cSSatish Balay PetscFunctionBegin; 1896a30f8f8cSSatish Balay *newmat = 0; 1897*b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1898*b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 1899*b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1900a30f8f8cSSatish Balay a->bs = oldmat->bs; 1901a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1902a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1903a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1904a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1905a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1906a30f8f8cSSatish Balay 1907a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1908a30f8f8cSSatish Balay a->rend = oldmat->rend; 1909a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1910a30f8f8cSSatish Balay a->cend = oldmat->cend; 1911a30f8f8cSSatish Balay a->size = oldmat->size; 1912a30f8f8cSSatish Balay a->rank = oldmat->rank; 1913a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1914a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1915a30f8f8cSSatish Balay a->rowindices = 0; 1916a30f8f8cSSatish Balay a->rowvalues = 0; 1917a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1918a30f8f8cSSatish Balay a->barray = 0; 1919a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1920a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1921a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1922a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1923a30f8f8cSSatish Balay 1924a30f8f8cSSatish Balay /* hash table stuff */ 1925a30f8f8cSSatish Balay a->ht = 0; 1926a30f8f8cSSatish Balay a->hd = 0; 1927a30f8f8cSSatish Balay a->ht_size = 0; 1928a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1929a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1930a30f8f8cSSatish Balay a->ht_total_ct = 0; 1931a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1932a30f8f8cSSatish Balay 1933a30f8f8cSSatish Balay a->rowners = (int*)PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 1934a30f8f8cSSatish Balay PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1935a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1936a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1937a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1938a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1939a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1940a30f8f8cSSatish Balay if (oldmat->colmap) { 1941a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1942a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1943a30f8f8cSSatish Balay #else 1944a30f8f8cSSatish Balay a->colmap = (int*)PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 1945a30f8f8cSSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1946a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1947a30f8f8cSSatish Balay #endif 1948a30f8f8cSSatish Balay } else a->colmap = 0; 1949a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 1950a30f8f8cSSatish Balay a->garray = (int*)PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 1951a30f8f8cSSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 1952a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1953a30f8f8cSSatish Balay } else a->garray = 0; 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1956a30f8f8cSSatish Balay PLogObjectParent(mat,a->lvec); 1957a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay PLogObjectParent(mat,a->Mvctx); 1960a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1961a30f8f8cSSatish Balay PLogObjectParent(mat,a->A); 1962a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1963a30f8f8cSSatish Balay PLogObjectParent(mat,a->B); 1964a30f8f8cSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1965a30f8f8cSSatish Balay *newmat = mat; 1966a30f8f8cSSatish Balay PetscFunctionReturn(0); 1967a30f8f8cSSatish Balay } 1968a30f8f8cSSatish Balay 1969a30f8f8cSSatish Balay #include "petscsys.h" 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay #undef __FUNC__ 1972a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatLoad_MPISBAIJ" 1973a30f8f8cSSatish Balay int MatLoad_MPISBAIJ(Viewer viewer,MatType type,Mat *newmat) 1974a30f8f8cSSatish Balay { 1975a30f8f8cSSatish Balay Mat A; 1976a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 1977a30f8f8cSSatish Balay Scalar *vals,*buf; 1978a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1979a30f8f8cSSatish Balay MPI_Status status; 1980a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1981a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 1982a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 1983a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 1984a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay PetscFunctionBegin; 1987a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1988a30f8f8cSSatish Balay 1989a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1990a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1991a30f8f8cSSatish Balay if (!rank) { 1992a30f8f8cSSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1993a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 199429bbc08cSBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 1995a30f8f8cSSatish Balay if (header[3] < 0) { 199629bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 1997a30f8f8cSSatish Balay } 1998a30f8f8cSSatish Balay } 1999a30f8f8cSSatish Balay 2000a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2001a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2002a30f8f8cSSatish Balay 200329bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2004a30f8f8cSSatish Balay 2005a30f8f8cSSatish Balay /* 2006a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2007a30f8f8cSSatish Balay divisible by the blocksize 2008a30f8f8cSSatish Balay */ 2009a30f8f8cSSatish Balay Mbs = M/bs; 2010a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2011a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2012a30f8f8cSSatish Balay else Mbs++; 2013a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2014a30f8f8cSSatish Balay PLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2015a30f8f8cSSatish Balay } 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay /* determine ownership of all rows */ 2018a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2019a30f8f8cSSatish Balay m = mbs * bs; 2020a30f8f8cSSatish Balay rowners = (int*)PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 2021a30f8f8cSSatish Balay browners = rowners + size + 1; 2022a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2023a30f8f8cSSatish Balay rowners[0] = 0; 2024a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2025a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2026a30f8f8cSSatish Balay rstart = rowners[rank]; 2027a30f8f8cSSatish Balay rend = rowners[rank+1]; 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 2030a30f8f8cSSatish Balay locrowlens = (int*)PetscMalloc((rend-rstart)*bs*sizeof(int));CHKPTRQ(locrowlens); 2031a30f8f8cSSatish Balay if (!rank) { 2032a30f8f8cSSatish Balay rowlengths = (int*)PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths); 2033a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2034a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2035a30f8f8cSSatish Balay sndcounts = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(sndcounts); 2036a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2037a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2038a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2039a30f8f8cSSatish Balay } else { 2040a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2041a30f8f8cSSatish Balay } 2042a30f8f8cSSatish Balay 20430222edb1SHong Zhang if (!rank) { /* procs[0] */ 2044a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 2045a30f8f8cSSatish Balay procsnz = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(procsnz); 2046a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2047a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2048a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2049a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2050a30f8f8cSSatish Balay } 2051a30f8f8cSSatish Balay } 2052a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2053a30f8f8cSSatish Balay 2054a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2055a30f8f8cSSatish Balay maxnz = 0; 2056a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2057a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2058a30f8f8cSSatish Balay } 2059a30f8f8cSSatish Balay cols = (int*)PetscMalloc(maxnz*sizeof(int));CHKPTRQ(cols); 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2062a30f8f8cSSatish Balay nz = procsnz[0]; 2063a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2064a30f8f8cSSatish Balay mycols = ibuf; 2065a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2066a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2067a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2068a30f8f8cSSatish Balay 2069a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2070a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2071a30f8f8cSSatish Balay nz = procsnz[i]; 2072a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2073a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2074a30f8f8cSSatish Balay } 2075a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2076a30f8f8cSSatish Balay if (size != 1) { 2077a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2078a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2079a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2080a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2081a30f8f8cSSatish Balay } 2082a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20830222edb1SHong Zhang } else { /* procs[i], i>0 */ 2084a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2085a30f8f8cSSatish Balay nz = 0; 2086a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2087a30f8f8cSSatish Balay nz += locrowlens[i]; 2088a30f8f8cSSatish Balay } 2089a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2090a30f8f8cSSatish Balay mycols = ibuf; 2091a30f8f8cSSatish Balay /* receive message of column indices*/ 2092a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2093a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 209429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2095a30f8f8cSSatish Balay } 2096a30f8f8cSSatish Balay 2097a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2098a30f8f8cSSatish Balay dlens = (int*)PetscMalloc(2*(rend-rstart+1)*sizeof(int));CHKPTRQ(dlens); 2099a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 2100a30f8f8cSSatish Balay mask = (int*)PetscMalloc(3*Mbs*sizeof(int));CHKPTRQ(mask); 2101a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2102a30f8f8cSSatish Balay masked1 = mask + Mbs; 2103a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2104a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2105a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2106a30f8f8cSSatish Balay dcount = 0; 2107a30f8f8cSSatish Balay odcount = 0; 2108a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2109a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2110a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21110222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2112a30f8f8cSSatish Balay if (!mask[tmp]) { 2113a30f8f8cSSatish Balay mask[tmp] = 1; 21140222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21150222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2116a30f8f8cSSatish Balay } 2117a30f8f8cSSatish Balay } 2118a30f8f8cSSatish Balay rowcount++; 2119a30f8f8cSSatish Balay } 2120a30f8f8cSSatish Balay 21210222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21220222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2123a30f8f8cSSatish Balay 2124a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2125a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2126a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2127a30f8f8cSSatish Balay } 2128a30f8f8cSSatish Balay 2129a30f8f8cSSatish Balay /* create our matrix */ 21307e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2131bfe19f1aSHong Zhang CHKERRQ(ierr); 2132a30f8f8cSSatish Balay A = *newmat; 2133a30f8f8cSSatish Balay MatSetOption(A,MAT_COLUMNS_SORTED); 2134a30f8f8cSSatish Balay 2135a30f8f8cSSatish Balay if (!rank) { 2136a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(maxnz*sizeof(Scalar));CHKPTRQ(buf); 2137a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2138a30f8f8cSSatish Balay nz = procsnz[0]; 2139a30f8f8cSSatish Balay vals = buf; 2140a30f8f8cSSatish Balay mycols = ibuf; 2141a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2142a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2143a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2144a30f8f8cSSatish Balay 2145a30f8f8cSSatish Balay /* insert into matrix */ 2146a30f8f8cSSatish Balay jj = rstart*bs; 2147a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21487e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2149a30f8f8cSSatish Balay mycols += locrowlens[i]; 2150a30f8f8cSSatish Balay vals += locrowlens[i]; 2151a30f8f8cSSatish Balay jj++; 2152a30f8f8cSSatish Balay } 21537e06b45fSHong Zhang 2154a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2155a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2156a30f8f8cSSatish Balay nz = procsnz[i]; 2157a30f8f8cSSatish Balay vals = buf; 2158a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay } 2161a30f8f8cSSatish Balay /* the last proc */ 2162a30f8f8cSSatish Balay if (size != 1){ 2163a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2164a30f8f8cSSatish Balay vals = buf; 2165a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2167a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2168a30f8f8cSSatish Balay } 2169a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21707e06b45fSHong Zhang 2171a30f8f8cSSatish Balay } else { 2172a30f8f8cSSatish Balay /* receive numeric values */ 2173a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(nz*sizeof(Scalar));CHKPTRQ(buf); 2174a30f8f8cSSatish Balay 2175a30f8f8cSSatish Balay /* receive message of values*/ 2176a30f8f8cSSatish Balay vals = buf; 2177a30f8f8cSSatish Balay mycols = ibuf; 2178a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 218029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2181a30f8f8cSSatish Balay 2182a30f8f8cSSatish Balay /* insert into matrix */ 2183a30f8f8cSSatish Balay jj = rstart*bs; 2184a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2185a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay mycols += locrowlens[i]; 2187a30f8f8cSSatish Balay vals += locrowlens[i]; 2188a30f8f8cSSatish Balay jj++; 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay } 21917e06b45fSHong Zhang 2192a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2195a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2200a30f8f8cSSatish Balay PetscFunctionReturn(0); 2201a30f8f8cSSatish Balay } 2202a30f8f8cSSatish Balay 2203a30f8f8cSSatish Balay #undef __FUNC__ 2204a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMPISBAIJSetHashTableFactor" 2205a30f8f8cSSatish Balay /*@ 2206a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2207a30f8f8cSSatish Balay 2208a30f8f8cSSatish Balay Input Parameters: 2209a30f8f8cSSatish Balay . mat - the matrix 2210a30f8f8cSSatish Balay . fact - factor 2211a30f8f8cSSatish Balay 2212a30f8f8cSSatish Balay Collective on Mat 2213a30f8f8cSSatish Balay 2214a30f8f8cSSatish Balay Level: advanced 2215a30f8f8cSSatish Balay 2216a30f8f8cSSatish Balay Notes: 2217a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2218a30f8f8cSSatish Balay 2219a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2220a30f8f8cSSatish Balay 2221a30f8f8cSSatish Balay .seealso: MatSetOption() 2222a30f8f8cSSatish Balay @*/ 2223a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2224a30f8f8cSSatish Balay { 2225a30f8f8cSSatish Balay PetscFunctionBegin; 222629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 222796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2228a30f8f8cSSatish Balay } 222924d5174aSHong Zhang 223024d5174aSHong Zhang #undef __FUNC__ 2231d0566740SHong Zhang #define __FUNC__ /*<a name=""></a>*/"MatGetRowMax_MPISBAIJ" 223224d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 223324d5174aSHong Zhang { 223424d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 223524d5174aSHong Zhang int ierr; 223624d5174aSHong Zhang 223724d5174aSHong Zhang PetscFunctionBegin; 223824d5174aSHong Zhang /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 2239d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2240d0566740SHong Zhang /* printf("GetRowMax is called\n"); */ 224124d5174aSHong Zhang PetscFunctionReturn(0); 224224d5174aSHong Zhang } 2243