xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision b758ae8c44070759d1facc3d2663bdd721e4de8f)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay 
666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith 
1026cec326SBarry Smith   PetscFunctionBegin;
1126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith   PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith   PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith   PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith   PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith   PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith   PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith   PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith   PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith 
4426cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith 
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith 
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini 
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini   Mat       preallocator;
78b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
79b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
80b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   PetscFunctionBegin;
83b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini   }
90b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini     PetscInt           ncols;
102b147fbf3SStefano Zampini     const PetscInt    *row;
103b147fbf3SStefano Zampini     const PetscScalar *vals;
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini     }
111b147fbf3SStefano Zampini   }
1129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini   Mat      B;
122b147fbf3SStefano Zampini   PetscInt r;
123b147fbf3SStefano Zampini 
124b147fbf3SStefano Zampini   PetscFunctionBegin;
125b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini     PetscInt  bs;
128b147fbf3SStefano Zampini 
1299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet     if (!isdense) {
1389566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet     } else {
1429566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet     }
14428d58a37SPierre Jolivet   } else {
14528d58a37SPierre Jolivet     B = *newmat;
1469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet   }
148b147fbf3SStefano Zampini 
1499566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini     PetscInt           ncols;
152b147fbf3SStefano Zampini     const PetscInt    *row;
153b147fbf3SStefano Zampini     const PetscScalar *vals;
154b147fbf3SStefano Zampini 
1559566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini       PetscInt i;
16048a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini     } else {
1629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini     }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini   }
1699566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini 
173b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini   } else {
176b147fbf3SStefano Zampini     *newmat = B;
177b147fbf3SStefano Zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini 
18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay 
185a30f8f8cSSatish Balay   PetscFunctionBegin;
1869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay 
19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay 
195a30f8f8cSSatish Balay   PetscFunctionBegin;
1969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay 
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet   do { \
203a30f8f8cSSatish Balay     brow = row / bs; \
2049371c9d4SSatish Balay     rp   = aj + ai[brow]; \
2059371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay     rmax = aimax[brow]; \
2079371c9d4SSatish Balay     nrow = ailen[brow]; \
208a30f8f8cSSatish Balay     bcol = col / bs; \
2099371c9d4SSatish Balay     ridx = row % bs; \
2109371c9d4SSatish Balay     cidx = col % bs; \
2119371c9d4SSatish Balay     low  = 0; \
2129371c9d4SSatish Balay     high = nrow; \
213a30f8f8cSSatish Balay     while (high - low > 3) { \
214a30f8f8cSSatish Balay       t = (low + high) / 2; \
215a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay       else low = t; \
217a30f8f8cSSatish Balay     } \
218a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay         else *bap = value; \
224a30f8f8cSSatish Balay         goto a_noinsert; \
225a30f8f8cSSatish Balay       } \
226a30f8f8cSSatish Balay     } \
227a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay     N = nrow++ - 1; \
231a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
236a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
237e56f5c9eSBarry Smith     A->nonzerostate++; \
238a30f8f8cSSatish Balay   a_noinsert:; \
239a30f8f8cSSatish Balay     ailen[brow] = nrow; \
240a8f51744SPierre Jolivet   } while (0)
241e5e170daSBarry Smith 
242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
243a8f51744SPierre Jolivet   do { \
244a30f8f8cSSatish Balay     brow = row / bs; \
2459371c9d4SSatish Balay     rp   = bj + bi[brow]; \
2469371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
2479371c9d4SSatish Balay     rmax = bimax[brow]; \
2489371c9d4SSatish Balay     nrow = bilen[brow]; \
249a30f8f8cSSatish Balay     bcol = col / bs; \
2509371c9d4SSatish Balay     ridx = row % bs; \
2519371c9d4SSatish Balay     cidx = col % bs; \
2529371c9d4SSatish Balay     low  = 0; \
2539371c9d4SSatish Balay     high = nrow; \
254a30f8f8cSSatish Balay     while (high - low > 3) { \
255a30f8f8cSSatish Balay       t = (low + high) / 2; \
256a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
257a30f8f8cSSatish Balay       else low = t; \
258a30f8f8cSSatish Balay     } \
259a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
260a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
261a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
262a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
263a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
264a30f8f8cSSatish Balay         else *bap = value; \
265a30f8f8cSSatish Balay         goto b_noinsert; \
266a30f8f8cSSatish Balay       } \
267a30f8f8cSSatish Balay     } \
268a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2695f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
270fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
271a30f8f8cSSatish Balay     N = nrow++ - 1; \
272a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2749566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2759566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
276a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
277a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
278e56f5c9eSBarry Smith     B->nonzerostate++; \
279a30f8f8cSSatish Balay   b_noinsert:; \
280a30f8f8cSSatish Balay     bilen[brow] = nrow; \
281a8f51744SPierre Jolivet   } while (0)
282a30f8f8cSSatish Balay 
283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
284da81f932SPierre Jolivet    Any a(i,j) with i>j input by user is ignored or generates an error
285a30f8f8cSSatish Balay */
28666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
287d71ae5a4SJacob Faibussowitsch {
288a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
289a30f8f8cSSatish Balay   MatScalar     value;
290ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2911302d50aSBarry Smith   PetscInt      i, j, row, col;
292d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
293d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
294d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
295a30f8f8cSSatish Balay 
296a30f8f8cSSatish Balay   /* Some Variables required in the macro */
297a30f8f8cSSatish Balay   Mat           A     = baij->A;
298a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)(A)->data;
2991302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
300a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   Mat          B     = baij->B;
303a30f8f8cSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
3041302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
305a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
306a30f8f8cSSatish Balay 
3071302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
3081302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
309a30f8f8cSSatish Balay   MatScalar *ap, *bap;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   /* for stash */
3120298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
3130298fd71SBarry Smith   MatScalar *v_loc = NULL;
314a30f8f8cSSatish Balay 
315a30f8f8cSSatish Balay   PetscFunctionBegin;
316a30f8f8cSSatish Balay   if (!baij->donotstash) {
31759ffdab8SBarry Smith     if (n > baij->n_loc) {
3189566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
3199566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
3209566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
3219566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
32226fbe8dcSKarl Rupp 
32359ffdab8SBarry Smith       baij->n_loc = n;
32459ffdab8SBarry Smith     }
32559ffdab8SBarry Smith     in_loc = baij->in_loc;
32659ffdab8SBarry Smith     v_loc  = baij->v_loc;
327a30f8f8cSSatish Balay   }
328a30f8f8cSSatish Balay 
329a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
330a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3315f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
332a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
333a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
334a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
33501b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
33601b2bd88SHong Zhang           if (a->ignore_ltriangular) {
33701b2bd88SHong Zhang             continue; /* ignore lower triangular blocks */
33826fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33901b2bd88SHong Zhang         }
340a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
341a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
3429371c9d4SSatish Balay           brow = row / bs;
3439371c9d4SSatish Balay           bcol = col / bs;
344a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
345db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
346db4deed7SKarl Rupp           else value = v[i + j * m];
347d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3489566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
349f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
350f7d195e4SLawrence Mitchell           continue;
351f7d195e4SLawrence Mitchell         } else {
352f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
353f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
354a30f8f8cSSatish Balay           if (mat->was_assembled) {
35548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
357eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35871730473SSatish Balay             col = col - 1;
359a30f8f8cSSatish Balay #else
36071730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
361a30f8f8cSSatish Balay #endif
362f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) {
3639566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
364a30f8f8cSSatish Balay               col = in[j];
365a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
366a30f8f8cSSatish Balay               B     = baij->B;
367a30f8f8cSSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
3689371c9d4SSatish Balay               bimax = b->imax;
3699371c9d4SSatish Balay               bi    = b->i;
3709371c9d4SSatish Balay               bilen = b->ilen;
3719371c9d4SSatish Balay               bj    = b->j;
372a30f8f8cSSatish Balay               ba    = b->a;
37371730473SSatish Balay             } else col += in[j] % bs;
374a30f8f8cSSatish Balay           } else col = in[j];
375db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
376db4deed7SKarl Rupp           else value = v[i + j * m];
377d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3789566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
379a30f8f8cSSatish Balay         }
380a30f8f8cSSatish Balay       }
381a30f8f8cSSatish Balay     } else { /* off processor entry */
3825f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
383a30f8f8cSSatish Balay       if (!baij->donotstash) {
3845080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
385a30f8f8cSSatish Balay         n_loc          = 0;
386a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
387f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
388a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
389a30f8f8cSSatish Balay           if (roworiented) {
390a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
391a30f8f8cSSatish Balay           } else {
392a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
393a30f8f8cSSatish Balay           }
394a30f8f8cSSatish Balay           n_loc++;
395a30f8f8cSSatish Balay         }
3969566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
397a30f8f8cSSatish Balay       }
398a30f8f8cSSatish Balay     }
399a30f8f8cSSatish Balay   }
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401a30f8f8cSSatish Balay }
402a30f8f8cSSatish Balay 
403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
404d71ae5a4SJacob Faibussowitsch {
40536bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
40636bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40736bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40836bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40936bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
41036bd2089SBarry Smith   const PetscScalar *value       = v;
41136bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
41236bd2089SBarry Smith 
41336bd2089SBarry Smith   PetscFunctionBegin;
41436bd2089SBarry Smith   if (col < row) {
4153ba16761SJacob Faibussowitsch     if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41636bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
41736bd2089SBarry Smith   }
41836bd2089SBarry Smith   rp    = aj + ai[row];
41936bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
42036bd2089SBarry Smith   rmax  = imax[row];
42136bd2089SBarry Smith   nrow  = ailen[row];
42236bd2089SBarry Smith   value = v;
42336bd2089SBarry Smith   low   = 0;
42436bd2089SBarry Smith   high  = nrow;
42536bd2089SBarry Smith 
42636bd2089SBarry Smith   while (high - low > 7) {
42736bd2089SBarry Smith     t = (low + high) / 2;
42836bd2089SBarry Smith     if (rp[t] > col) high = t;
42936bd2089SBarry Smith     else low = t;
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   for (i = low; i < high; i++) {
43236bd2089SBarry Smith     if (rp[i] > col) break;
43336bd2089SBarry Smith     if (rp[i] == col) {
43436bd2089SBarry Smith       bap = ap + bs2 * i;
43536bd2089SBarry Smith       if (roworiented) {
43636bd2089SBarry Smith         if (is == ADD_VALUES) {
43736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
438ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43936bd2089SBarry Smith           }
44036bd2089SBarry Smith         } else {
44136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
442ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44336bd2089SBarry Smith           }
44436bd2089SBarry Smith         }
44536bd2089SBarry Smith       } else {
44636bd2089SBarry Smith         if (is == ADD_VALUES) {
44736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
448ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44936bd2089SBarry Smith           }
45036bd2089SBarry Smith         } else {
45136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
452ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45336bd2089SBarry Smith           }
45436bd2089SBarry Smith         }
45536bd2089SBarry Smith       }
45636bd2089SBarry Smith       goto noinsert2;
45736bd2089SBarry Smith     }
45836bd2089SBarry Smith   }
45936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4605f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
46136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4629371c9d4SSatish Balay   N = nrow++ - 1;
4639371c9d4SSatish Balay   high++;
46436bd2089SBarry Smith   /* shift up all the later entries in this row */
4659566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4669566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46736bd2089SBarry Smith   rp[i] = col;
46836bd2089SBarry Smith   bap   = ap + bs2 * i;
46936bd2089SBarry Smith   if (roworiented) {
47036bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
471ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
47236bd2089SBarry Smith     }
47336bd2089SBarry Smith   } else {
47436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
475ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47636bd2089SBarry Smith     }
47736bd2089SBarry Smith   }
47836bd2089SBarry Smith noinsert2:;
47936bd2089SBarry Smith   ailen[row] = nrow;
4803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48136bd2089SBarry Smith }
48236bd2089SBarry Smith 
48336bd2089SBarry Smith /*
48436bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
48536bd2089SBarry Smith */
486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
487d71ae5a4SJacob Faibussowitsch {
48836bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
48936bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
49036bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
49136bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
49236bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
49336bd2089SBarry Smith   const PetscScalar *value       = v;
49436bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
49536bd2089SBarry Smith 
49636bd2089SBarry Smith   PetscFunctionBegin;
49736bd2089SBarry Smith   rp    = aj + ai[row];
49836bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
49936bd2089SBarry Smith   rmax  = imax[row];
50036bd2089SBarry Smith   nrow  = ailen[row];
50136bd2089SBarry Smith   low   = 0;
50236bd2089SBarry Smith   high  = nrow;
50336bd2089SBarry Smith   value = v;
50436bd2089SBarry Smith   while (high - low > 7) {
50536bd2089SBarry Smith     t = (low + high) / 2;
50636bd2089SBarry Smith     if (rp[t] > col) high = t;
50736bd2089SBarry Smith     else low = t;
50836bd2089SBarry Smith   }
50936bd2089SBarry Smith   for (i = low; i < high; i++) {
51036bd2089SBarry Smith     if (rp[i] > col) break;
51136bd2089SBarry Smith     if (rp[i] == col) {
51236bd2089SBarry Smith       bap = ap + bs2 * i;
51336bd2089SBarry Smith       if (roworiented) {
51436bd2089SBarry Smith         if (is == ADD_VALUES) {
51536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
516ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51736bd2089SBarry Smith           }
51836bd2089SBarry Smith         } else {
51936bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
520ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
52136bd2089SBarry Smith           }
52236bd2089SBarry Smith         }
52336bd2089SBarry Smith       } else {
52436bd2089SBarry Smith         if (is == ADD_VALUES) {
52536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
526ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52736bd2089SBarry Smith             bap += bs;
52836bd2089SBarry Smith           }
52936bd2089SBarry Smith         } else {
53036bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
531ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
53236bd2089SBarry Smith             bap += bs;
53336bd2089SBarry Smith           }
53436bd2089SBarry Smith         }
53536bd2089SBarry Smith       }
53636bd2089SBarry Smith       goto noinsert2;
53736bd2089SBarry Smith     }
53836bd2089SBarry Smith   }
53936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
5405f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
54136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5429371c9d4SSatish Balay   N = nrow++ - 1;
5439371c9d4SSatish Balay   high++;
54436bd2089SBarry Smith   /* shift up all the later entries in this row */
5459566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5469566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54736bd2089SBarry Smith   rp[i] = col;
54836bd2089SBarry Smith   bap   = ap + bs2 * i;
54936bd2089SBarry Smith   if (roworiented) {
55036bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
551ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
55236bd2089SBarry Smith     }
55336bd2089SBarry Smith   } else {
55436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
555ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55636bd2089SBarry Smith     }
55736bd2089SBarry Smith   }
55836bd2089SBarry Smith noinsert2:;
55936bd2089SBarry Smith   ailen[row] = nrow;
5603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56136bd2089SBarry Smith }
56236bd2089SBarry Smith 
56336bd2089SBarry Smith /*
56436bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
56536bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56636bd2089SBarry Smith */
56766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
568d71ae5a4SJacob Faibussowitsch {
5690880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
570f15d580aSBarry Smith   const MatScalar *value;
571f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
572ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
573899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
574476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
575476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5760880e062SHong Zhang 
577a30f8f8cSSatish Balay   PetscFunctionBegin;
5780880e062SHong Zhang   if (!barray) {
5799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5800880e062SHong Zhang     baij->barray = barray;
5810880e062SHong Zhang   }
5820880e062SHong Zhang 
5830880e062SHong Zhang   if (roworiented) {
5840880e062SHong Zhang     stepval = (n - 1) * bs;
5850880e062SHong Zhang   } else {
5860880e062SHong Zhang     stepval = (m - 1) * bs;
5870880e062SHong Zhang   }
5880880e062SHong Zhang   for (i = 0; i < m; i++) {
5890880e062SHong Zhang     if (im[i] < 0) continue;
5906bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5910880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5920880e062SHong Zhang       row = im[i] - rstart;
5930880e062SHong Zhang       for (j = 0; j < n; j++) {
594f3f98c53SJed Brown         if (im[i] > in[j]) {
595f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
596e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
597f3f98c53SJed Brown         }
5980880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5990880e062SHong Zhang         if ((roworiented) && (n == 1)) {
600f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
6010880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
602f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
6030880e062SHong Zhang         } else { /* Here a copy is required */
6040880e062SHong Zhang           if (roworiented) {
6050880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
6060880e062SHong Zhang           } else {
6070880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
6080880e062SHong Zhang           }
6090880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
610ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6110880e062SHong Zhang           }
6120880e062SHong Zhang           barray -= bs2;
6130880e062SHong Zhang         }
6140880e062SHong Zhang 
6150880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
6160880e062SHong Zhang           col = in[j] - cstart;
6179566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
618f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
619f7d195e4SLawrence Mitchell           continue;
620f7d195e4SLawrence Mitchell         } else {
621f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6220880e062SHong Zhang           if (mat->was_assembled) {
62348a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6240880e062SHong Zhang 
6250880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
626eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
627*b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
6280880e062SHong Zhang #else
629*b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
6300880e062SHong Zhang #endif
631f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
6329566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6330880e062SHong Zhang               col = in[j];
6340880e062SHong Zhang             }
63526fbe8dcSKarl Rupp           } else col = in[j];
6369566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6370880e062SHong Zhang         }
6380880e062SHong Zhang       }
6390880e062SHong Zhang     } else {
6405f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6410880e062SHong Zhang       if (!baij->donotstash) {
6420880e062SHong Zhang         if (roworiented) {
6439566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6440880e062SHong Zhang         } else {
6459566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6460880e062SHong Zhang         }
6470880e062SHong Zhang       }
6480880e062SHong Zhang     }
6490880e062SHong Zhang   }
6503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
651a30f8f8cSSatish Balay }
652a30f8f8cSSatish Balay 
65366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
654d71ae5a4SJacob Faibussowitsch {
655f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
656d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
657d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay   PetscFunctionBegin;
660a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
66154c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66254c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
663a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
664a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
665a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
66654c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
66754c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
668a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
669a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
6709566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
671a30f8f8cSSatish Balay         } else {
67248a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
673a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
674eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
675a30f8f8cSSatish Balay           data--;
676a30f8f8cSSatish Balay #else
677a30f8f8cSSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
678a30f8f8cSSatish Balay #endif
679a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
680a30f8f8cSSatish Balay           else {
681a30f8f8cSSatish Balay             col = data + idxn[j] % bs;
6829566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
683a30f8f8cSSatish Balay           }
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
687a30f8f8cSSatish Balay   }
6883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
689a30f8f8cSSatish Balay }
690a30f8f8cSSatish Balay 
69166976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
692d71ae5a4SJacob Faibussowitsch {
693a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
694a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
695a30f8f8cSSatish Balay 
696a30f8f8cSSatish Balay   PetscFunctionBegin;
697a30f8f8cSSatish Balay   if (baij->size == 1) {
6989566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
699a30f8f8cSSatish Balay   } else {
700a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
7019566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
7029566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
7039371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7049371c9d4SSatish Balay       lnorm2++; /* squar power of norm(A) */
7059566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
7069371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7079371c9d4SSatish Balay       lnorm2--; /* squar power of norm(B) */
7081c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7098f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7109566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
7110b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7120b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7130b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
7140b8dc8d2SHong Zhang       PetscReal    *rsum, *rsum2, vabs;
715899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
716d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7170b8dc8d2SHong Zhang       MatScalar    *v;
7180b8dc8d2SHong Zhang 
7199566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2));
7209566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum, mat->cmap->N));
7210b8dc8d2SHong Zhang       /* Amat */
7229371c9d4SSatish Balay       v  = amat->a;
7239371c9d4SSatish Balay       jj = amat->j;
7240b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7250b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7260b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
7270b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7289371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
7299371c9d4SSatish Balay           jj++;
7300b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7310b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7329371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7339371c9d4SSatish Balay               v++;
7340b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7350b8dc8d2SHong Zhang               /* non-diagonal block */
7360b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7370b8dc8d2SHong Zhang             }
7380b8dc8d2SHong Zhang           }
7390b8dc8d2SHong Zhang         }
7409566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7410b8dc8d2SHong Zhang       }
7420b8dc8d2SHong Zhang       /* Bmat */
7439371c9d4SSatish Balay       v  = bmat->a;
7449371c9d4SSatish Balay       jj = bmat->j;
7450b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7460b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7470b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
7480b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7499371c9d4SSatish Balay           gcol = bs * garray[*jj];
7509371c9d4SSatish Balay           jj++;
7510b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7520b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7539371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7549371c9d4SSatish Balay               v++;
7550b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7560b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
7570b8dc8d2SHong Zhang             }
7580b8dc8d2SHong Zhang           }
7590b8dc8d2SHong Zhang         }
7609566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7610b8dc8d2SHong Zhang       }
7621c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7630b8dc8d2SHong Zhang       *norm = 0.0;
764d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
7650b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7660b8dc8d2SHong Zhang       }
7679566063dSJacob Faibussowitsch       PetscCall(PetscFree2(rsum, rsum2));
768f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
769a30f8f8cSSatish Balay   }
7703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771a30f8f8cSSatish Balay }
772a30f8f8cSSatish Balay 
77366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
774d71ae5a4SJacob Faibussowitsch {
775a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7761302d50aSBarry Smith   PetscInt      nstash, reallocs;
777a30f8f8cSSatish Balay 
778a30f8f8cSSatish Balay   PetscFunctionBegin;
7793ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
780a30f8f8cSSatish Balay 
7819566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7829566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7839566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7849566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7859566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7869566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
788a30f8f8cSSatish Balay }
789a30f8f8cSSatish Balay 
79066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
791d71ae5a4SJacob Faibussowitsch {
792a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
793a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
79413f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
795e44c0bd4SBarry Smith   PetscInt     *row, *col;
796ace3abfcSBarry Smith   PetscBool     other_disassembled;
79713f74950SBarry Smith   PetscMPIInt   n;
798ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
799a30f8f8cSSatish Balay   MatScalar    *val;
800a30f8f8cSSatish Balay 
80191c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
802a30f8f8cSSatish Balay   PetscFunctionBegin;
8034cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
804a30f8f8cSSatish Balay     while (1) {
8059566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
806a30f8f8cSSatish Balay       if (!flg) break;
807a30f8f8cSSatish Balay 
808a30f8f8cSSatish Balay       for (i = 0; i < n;) {
809a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
81026fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
81126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
81226fbe8dcSKarl Rupp         }
813a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
814a30f8f8cSSatish Balay         else ncols = n - i;
815a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
8169566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
817a30f8f8cSSatish Balay         i = j;
818a30f8f8cSSatish Balay       }
819a30f8f8cSSatish Balay     }
8209566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
821a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
8225e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
823a30f8f8cSSatish Balay        restore the original flags */
824a30f8f8cSSatish Balay     r1 = baij->roworiented;
825a30f8f8cSSatish Balay     r2 = a->roworiented;
82691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
82726fbe8dcSKarl Rupp 
828a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
829a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
83026fbe8dcSKarl Rupp 
83191c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
832a30f8f8cSSatish Balay     while (1) {
8339566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
834a30f8f8cSSatish Balay       if (!flg) break;
835a30f8f8cSSatish Balay 
836a30f8f8cSSatish Balay       for (i = 0; i < n;) {
837a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
83826fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
83926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
84026fbe8dcSKarl Rupp         }
841a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
842a30f8f8cSSatish Balay         else ncols = n - i;
8439566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
844a30f8f8cSSatish Balay         i = j;
845a30f8f8cSSatish Balay       }
846a30f8f8cSSatish Balay     }
8479566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
84826fbe8dcSKarl Rupp 
849a30f8f8cSSatish Balay     baij->roworiented = r1;
850a30f8f8cSSatish Balay     a->roworiented    = r2;
85126fbe8dcSKarl Rupp 
85291c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */
853a30f8f8cSSatish Balay   }
854a30f8f8cSSatish Balay 
8559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
8569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
857a30f8f8cSSatish Balay 
858a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
8596aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
860a30f8f8cSSatish Balay   /*
861a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
862a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
863a30f8f8cSSatish Balay   */
864a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8655f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
86648a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
867a30f8f8cSSatish Balay   }
868a30f8f8cSSatish Balay 
8699371c9d4SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ }
8709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
872a30f8f8cSSatish Balay 
8739566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
87426fbe8dcSKarl Rupp 
875f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8764f9cfa9eSBarry Smith 
8774f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
878f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
879e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
8801c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
881e56f5c9eSBarry Smith   }
8823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
883a30f8f8cSSatish Balay }
884a30f8f8cSSatish Balay 
885dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8869804daf3SBarry Smith #include <petscdraw.h>
887d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
888d71ae5a4SJacob Faibussowitsch {
889a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
890d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8917da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
892ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
893b0a32e0cSBarry Smith   PetscViewer       sviewer;
894f3ef73ceSBarry Smith   PetscViewerFormat format;
895a30f8f8cSSatish Balay 
896a30f8f8cSSatish Balay   PetscFunctionBegin;
8979566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
8989566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
89932077d6dSBarry Smith   if (iascii) {
9009566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
901456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
902a30f8f8cSSatish Balay       MatInfo info;
9039566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
9049566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9059566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9069371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
9079371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
9089566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9109566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9129566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9139566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9149566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9159566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9163ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
917fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9189566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
9193ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
920c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9213ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
922a30f8f8cSSatish Balay     }
923a30f8f8cSSatish Balay   }
924a30f8f8cSSatish Balay 
925a30f8f8cSSatish Balay   if (isdraw) {
926b0a32e0cSBarry Smith     PetscDraw draw;
927ace3abfcSBarry Smith     PetscBool isnull;
9289566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9299566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
9303ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
931a30f8f8cSSatish Balay   }
932a30f8f8cSSatish Balay 
9337da1fb6eSBarry Smith   {
934a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
935a30f8f8cSSatish Balay     Mat           A;
93665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
93765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
938d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
939a30f8f8cSSatish Balay     MatScalar    *a;
9403e219373SBarry Smith     const char   *matname;
941a30f8f8cSSatish Balay 
942f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9439566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
944dd400576SPatrick Sanan     if (rank == 0) {
9459566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
946a30f8f8cSSatish Balay     } else {
9479566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
948a30f8f8cSSatish Balay     }
9499566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
9509566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9519566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
952a30f8f8cSSatish Balay 
953a30f8f8cSSatish Balay     /* copy over the A part */
95465d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9559371c9d4SSatish Balay     ai   = Aloc->i;
9569371c9d4SSatish Balay     aj   = Aloc->j;
9579371c9d4SSatish Balay     a    = Aloc->a;
9589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
959a30f8f8cSSatish Balay 
960a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
961e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
96226fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
963a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
964e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
965a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9669566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
96726fbe8dcSKarl Rupp           col++;
96826fbe8dcSKarl Rupp           a += bs;
969a30f8f8cSSatish Balay         }
970a30f8f8cSSatish Balay       }
971a30f8f8cSSatish Balay     }
972a30f8f8cSSatish Balay     /* copy over the B part */
97365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9749371c9d4SSatish Balay     ai   = Bloc->i;
9759371c9d4SSatish Balay     aj   = Bloc->j;
9769371c9d4SSatish Balay     a    = Bloc->a;
977a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
978e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
97926fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
980a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
981a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
982a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9839566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
98426fbe8dcSKarl Rupp           col++;
98526fbe8dcSKarl Rupp           a += bs;
986a30f8f8cSSatish Balay         }
987a30f8f8cSSatish Balay       }
988a30f8f8cSSatish Balay     }
9899566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9909566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9919566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
992a30f8f8cSSatish Balay     /*
993a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
994b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
995a30f8f8cSSatish Balay     */
9969566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
99723a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
998dd400576SPatrick Sanan     if (rank == 0) {
999f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname));
1000f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer));
1001a30f8f8cSSatish Balay     }
10029566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
10039566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
1004a30f8f8cSSatish Balay   }
10053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1006a30f8f8cSSatish Balay }
1007a30f8f8cSSatish Balay 
1008618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1009618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1010d1654148SHong Zhang 
101166976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1012d71ae5a4SJacob Faibussowitsch {
1013ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1014a30f8f8cSSatish Balay 
1015a30f8f8cSSatish Balay   PetscFunctionBegin;
10169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1020d1654148SHong Zhang   if (iascii || isdraw || issocket) {
10219566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
10221baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1024a30f8f8cSSatish Balay }
1025a30f8f8cSSatish Balay 
1026789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX)
1027789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1028d71ae5a4SJacob Faibussowitsch {
1029547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1030eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10316de40e93SBarry Smith   PetscScalar       *from;
10326de40e93SBarry Smith   const PetscScalar *x;
1033547795f9SHong Zhang 
1034547795f9SHong Zhang   PetscFunctionBegin;
1035547795f9SHong Zhang   /* diagonal part */
10369566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1037629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1038629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1039629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1040547795f9SHong Zhang 
1041547795f9SHong Zhang   /* subdiagonal part */
10425f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10439566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1044547795f9SHong Zhang 
1045547795f9SHong Zhang   /* copy x into the vec slvec0 */
10469566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10479566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1048547795f9SHong Zhang 
10499566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1052547795f9SHong Zhang 
10539566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10549566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1055547795f9SHong Zhang   /* supperdiagonal part */
10569566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1058547795f9SHong Zhang }
1059789afff4SPierre Jolivet #endif
1060547795f9SHong Zhang 
106166976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1062d71ae5a4SJacob Faibussowitsch {
1063a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1064eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1065d9ca1df4SBarry Smith   PetscScalar       *from;
1066d9ca1df4SBarry Smith   const PetscScalar *x;
1067a9d4b620SHong Zhang 
1068a9d4b620SHong Zhang   PetscFunctionBegin;
1069a9d4b620SHong Zhang   /* diagonal part */
10709566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1071629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1072629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1073629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1074a9d4b620SHong Zhang 
1075a9d4b620SHong Zhang   /* subdiagonal part */
10769566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1077fc165ae2SBarry Smith 
1078a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10799566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1081a9d4b620SHong Zhang 
10829566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10849566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1085fc165ae2SBarry Smith 
10869566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10879566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1088a9d4b620SHong Zhang   /* supperdiagonal part */
10899566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1091a9d4b620SHong Zhang }
1092a9d4b620SHong Zhang 
109366976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
109466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1095d71ae5a4SJacob Faibussowitsch {
1096eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1097eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1098629a200eSBarry Smith   PetscScalar       *from;
1099eb1ec7c1SStefano Zampini   const PetscScalar *x;
1100eb1ec7c1SStefano Zampini 
1101eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1102eb1ec7c1SStefano Zampini   /* diagonal part */
11039566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1104629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1105629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1106eb1ec7c1SStefano Zampini 
1107eb1ec7c1SStefano Zampini   /* subdiagonal part */
11085f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
11099566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1110eb1ec7c1SStefano Zampini 
1111eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11129566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11139566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11149566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11159566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1116eb1ec7c1SStefano Zampini 
11179566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11199566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1120eb1ec7c1SStefano Zampini 
1121eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11229566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1124eb1ec7c1SStefano Zampini }
112566976f2fSJacob Faibussowitsch #endif
1126eb1ec7c1SStefano Zampini 
112766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1128d71ae5a4SJacob Faibussowitsch {
1129de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1130d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1131629a200eSBarry Smith   PetscScalar       *from;
1132d9ca1df4SBarry Smith   const PetscScalar *x;
1133a9d4b620SHong Zhang 
1134a9d4b620SHong Zhang   PetscFunctionBegin;
1135a9d4b620SHong Zhang   /* diagonal part */
11369566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1137629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1138629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1139a9d4b620SHong Zhang 
1140a9d4b620SHong Zhang   /* subdiagonal part */
11419566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1142a9d4b620SHong Zhang 
1143a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11449566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11459566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11469566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1148a9d4b620SHong Zhang 
11499566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11519566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1152a9d4b620SHong Zhang 
1153a9d4b620SHong Zhang   /* supperdiagonal part */
11549566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1156a9d4b620SHong Zhang }
1157a9d4b620SHong Zhang 
1158a30f8f8cSSatish Balay /*
1159a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1160a30f8f8cSSatish Balay    diagonal block
1161a30f8f8cSSatish Balay */
116266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1163d71ae5a4SJacob Faibussowitsch {
1164a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1165a30f8f8cSSatish Balay 
1166a30f8f8cSSatish Balay   PetscFunctionBegin;
116708401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11689566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1170a30f8f8cSSatish Balay }
1171a30f8f8cSSatish Balay 
117266976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1173d71ae5a4SJacob Faibussowitsch {
1174a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1175a30f8f8cSSatish Balay 
1176a30f8f8cSSatish Balay   PetscFunctionBegin;
11779566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11789566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1180a30f8f8cSSatish Balay }
1181a30f8f8cSSatish Balay 
118266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1183d71ae5a4SJacob Faibussowitsch {
1184d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1185d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1186d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1187d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1188899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1189d0d4cfc2SHong Zhang 
1190a30f8f8cSSatish Balay   PetscFunctionBegin;
11915f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1192d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1193d0d4cfc2SHong Zhang 
1194d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1195d0d4cfc2SHong Zhang     /*
1196d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1197d0d4cfc2SHong Zhang     */
1198d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1199d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1200d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1201d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1202d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
120326fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1204d0d4cfc2SHong Zhang     }
12059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1206d0d4cfc2SHong Zhang   }
1207d0d4cfc2SHong Zhang 
12085f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1209d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1210d0d4cfc2SHong Zhang 
12119371c9d4SSatish Balay   pvA = &vworkA;
12129371c9d4SSatish Balay   pcA = &cworkA;
12139371c9d4SSatish Balay   pvB = &vworkB;
12149371c9d4SSatish Balay   pcB = &cworkB;
12159371c9d4SSatish Balay   if (!v) {
12169371c9d4SSatish Balay     pvA = NULL;
12179371c9d4SSatish Balay     pvB = NULL;
12189371c9d4SSatish Balay   }
12199371c9d4SSatish Balay   if (!idx) {
12209371c9d4SSatish Balay     pcA = NULL;
12219371c9d4SSatish Balay     if (!v) pcB = NULL;
12229371c9d4SSatish Balay   }
12239566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12249566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1225d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1226d0d4cfc2SHong Zhang 
1227d0d4cfc2SHong Zhang   cmap = mat->garray;
1228d0d4cfc2SHong Zhang   if (v || idx) {
1229d0d4cfc2SHong Zhang     if (nztot) {
1230d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1231d0d4cfc2SHong Zhang       PetscInt imark = -1;
1232d0d4cfc2SHong Zhang       if (v) {
1233d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1234d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1235d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1236d0d4cfc2SHong Zhang           else break;
1237d0d4cfc2SHong Zhang         }
1238d0d4cfc2SHong Zhang         imark = i;
1239d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1240d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1241d0d4cfc2SHong Zhang       }
1242d0d4cfc2SHong Zhang       if (idx) {
1243d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1244d0d4cfc2SHong Zhang         if (imark > -1) {
1245ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1246d0d4cfc2SHong Zhang         } else {
1247d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
124826fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1249d0d4cfc2SHong Zhang             else break;
1250d0d4cfc2SHong Zhang           }
1251d0d4cfc2SHong Zhang           imark = i;
1252d0d4cfc2SHong Zhang         }
1253d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1254d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1255d0d4cfc2SHong Zhang       }
1256d0d4cfc2SHong Zhang     } else {
1257f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1258f4259b30SLisandro Dalcin       if (v) *v = NULL;
1259d0d4cfc2SHong Zhang     }
1260d0d4cfc2SHong Zhang   }
1261d0d4cfc2SHong Zhang   *nz = nztot;
12629566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12639566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1265a30f8f8cSSatish Balay }
1266a30f8f8cSSatish Balay 
126766976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1268d71ae5a4SJacob Faibussowitsch {
1269a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1270a30f8f8cSSatish Balay 
1271a30f8f8cSSatish Balay   PetscFunctionBegin;
12725f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1273a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
12743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1275a30f8f8cSSatish Balay }
1276a30f8f8cSSatish Balay 
127766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1278d71ae5a4SJacob Faibussowitsch {
1279d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1280d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1281d0d4cfc2SHong Zhang 
1282d0d4cfc2SHong Zhang   PetscFunctionBegin;
1283d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
12843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1285d0d4cfc2SHong Zhang }
128666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1287d71ae5a4SJacob Faibussowitsch {
1288d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1289d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1290d0d4cfc2SHong Zhang 
1291d0d4cfc2SHong Zhang   PetscFunctionBegin;
1292d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
12933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1294d0d4cfc2SHong Zhang }
1295d0d4cfc2SHong Zhang 
129666976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1297d71ae5a4SJacob Faibussowitsch {
12985f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
12995f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
13002726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
13012726fb6dSPierre Jolivet 
13029566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
13039566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
13045f80ce2aSJacob Faibussowitsch   }
13053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13062726fb6dSPierre Jolivet }
13072726fb6dSPierre Jolivet 
130866976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1309d71ae5a4SJacob Faibussowitsch {
131099cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
131199cafbc1SBarry Smith 
131299cafbc1SBarry Smith   PetscFunctionBegin;
13139566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13149566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
13153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
131699cafbc1SBarry Smith }
131799cafbc1SBarry Smith 
131866976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1319d71ae5a4SJacob Faibussowitsch {
132099cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
132199cafbc1SBarry Smith 
132299cafbc1SBarry Smith   PetscFunctionBegin;
13239566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13249566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
13253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
132699cafbc1SBarry Smith }
132799cafbc1SBarry Smith 
13287dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
132936032a97SHong Zhang    Input: isrow       - distributed(parallel),
133036032a97SHong Zhang           iscol_local - locally owned (seq)
133136032a97SHong Zhang */
133266976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1333d71ae5a4SJacob Faibussowitsch {
13348f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13358f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
133636032a97SHong Zhang 
133736032a97SHong Zhang   PetscFunctionBegin;
133866976f2fSJacob Faibussowitsch   *flg = PETSC_FALSE;
13399566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13409566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
134166976f2fSJacob Faibussowitsch   if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS);
13428f46ffcaSHong Zhang 
13439566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13449566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13458f46ffcaSHong Zhang 
13469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13489566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13499566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13509566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13519566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13528f46ffcaSHong Zhang 
13538f46ffcaSHong Zhang   nmatch = 0;
13548f46ffcaSHong Zhang   k      = 0;
13558f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13568f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13578f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13589371c9d4SSatish Balay         k = j;
13599371c9d4SSatish Balay         nmatch++;
13608f46ffcaSHong Zhang         break;
13618f46ffcaSHong Zhang       }
13628f46ffcaSHong Zhang     }
13638f46ffcaSHong Zhang   }
13649566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13659566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13669566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13679566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13681098a8e8SHong Zhang   if (nmatch < sz1) {
13691098a8e8SHong Zhang     *flg = PETSC_FALSE;
13701098a8e8SHong Zhang   } else {
13711098a8e8SHong Zhang     *flg = PETSC_TRUE;
13721098a8e8SHong Zhang   }
13733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13748f46ffcaSHong Zhang }
137536032a97SHong Zhang 
137666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1377d71ae5a4SJacob Faibussowitsch {
1378fdfbdca6SPierre Jolivet   Mat       C[2];
1379fdfbdca6SPierre Jolivet   IS        iscol_local, isrow_local;
1380fdfbdca6SPierre Jolivet   PetscInt  csize, csize_local, rsize;
1381fdfbdca6SPierre Jolivet   PetscBool isequal, issorted, isidentity = PETSC_FALSE;
138236032a97SHong Zhang 
138336032a97SHong Zhang   PetscFunctionBegin;
13849566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1385fdfbdca6SPierre Jolivet   PetscCall(ISGetLocalSize(isrow, &rsize));
138636032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13879566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13885f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
138936032a97SHong Zhang   } else {
13909566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
13919566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
1392fdfbdca6SPierre Jolivet     PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted");
13938f46ffcaSHong Zhang   }
1394fdfbdca6SPierre Jolivet   PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
1395fdfbdca6SPierre Jolivet   if (!isequal) {
1396fdfbdca6SPierre Jolivet     PetscCall(ISGetLocalSize(iscol_local, &csize_local));
1397fdfbdca6SPierre Jolivet     isidentity = (PetscBool)(mat->cmap->N == csize_local);
1398fdfbdca6SPierre Jolivet     if (!isidentity) {
1399fdfbdca6SPierre Jolivet       if (call == MAT_REUSE_MATRIX) {
1400fdfbdca6SPierre Jolivet         PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local));
1401fdfbdca6SPierre Jolivet         PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1402fdfbdca6SPierre Jolivet       } else {
1403fdfbdca6SPierre Jolivet         PetscCall(ISAllGather(isrow, &isrow_local));
1404fdfbdca6SPierre Jolivet         PetscCall(ISSorted(isrow_local, &issorted));
1405fdfbdca6SPierre Jolivet         PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted");
1406fdfbdca6SPierre Jolivet       }
1407fdfbdca6SPierre Jolivet     }
1408fdfbdca6SPierre Jolivet   }
14097dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
1410fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity)));
1411fdfbdca6SPierre Jolivet   if (!isequal && !isidentity) {
14128f46ffcaSHong Zhang     if (call == MAT_INITIAL_MATRIX) {
1413fdfbdca6SPierre Jolivet       IS       intersect;
1414fdfbdca6SPierre Jolivet       PetscInt ni;
1415fdfbdca6SPierre Jolivet 
1416fdfbdca6SPierre Jolivet       PetscCall(ISIntersect(isrow_local, iscol_local, &intersect));
1417fdfbdca6SPierre Jolivet       PetscCall(ISGetLocalSize(intersect, &ni));
1418fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&intersect));
1419fdfbdca6SPierre Jolivet       PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni);
1420fdfbdca6SPierre Jolivet     }
1421fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE));
1422fdfbdca6SPierre Jolivet     PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1));
1423fdfbdca6SPierre Jolivet     PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN));
1424fdfbdca6SPierre Jolivet     if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1425fdfbdca6SPierre Jolivet     else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat));
1426fdfbdca6SPierre Jolivet     else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1427fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C));
1428fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C + 1));
1429fdfbdca6SPierre Jolivet   }
1430fdfbdca6SPierre Jolivet   if (call == MAT_INITIAL_MATRIX) {
1431fdfbdca6SPierre Jolivet     if (!isequal && !isidentity) {
1432fdfbdca6SPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local));
1433fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&isrow_local));
1434fdfbdca6SPierre Jolivet     }
14359566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14369566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14378f46ffcaSHong Zhang   }
14383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14398f46ffcaSHong Zhang }
14408f46ffcaSHong Zhang 
144166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1442d71ae5a4SJacob Faibussowitsch {
1443a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1444a30f8f8cSSatish Balay 
1445a30f8f8cSSatish Balay   PetscFunctionBegin;
14469566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14479566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1449a30f8f8cSSatish Balay }
1450a30f8f8cSSatish Balay 
145166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1452d71ae5a4SJacob Faibussowitsch {
1453a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1454a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
14553966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1456a30f8f8cSSatish Balay 
1457a30f8f8cSSatish Balay   PetscFunctionBegin;
1458d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
145926fbe8dcSKarl Rupp 
14609566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
146126fbe8dcSKarl Rupp 
14629371c9d4SSatish Balay   isend[0] = info->nz_used;
14639371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14649371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14659371c9d4SSatish Balay   isend[3] = info->memory;
14669371c9d4SSatish Balay   isend[4] = info->mallocs;
146726fbe8dcSKarl Rupp 
14689566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
146926fbe8dcSKarl Rupp 
14709371c9d4SSatish Balay   isend[0] += info->nz_used;
14719371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14729371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14739371c9d4SSatish Balay   isend[3] += info->memory;
14749371c9d4SSatish Balay   isend[4] += info->mallocs;
1475a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1476a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1477a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1478a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1479a30f8f8cSSatish Balay     info->memory       = isend[3];
1480a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1481a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14821c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
148326fbe8dcSKarl Rupp 
1484a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1485a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1486a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1487a30f8f8cSSatish Balay     info->memory       = irecv[3];
1488a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1489a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14901c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
149126fbe8dcSKarl Rupp 
1492a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1493a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1494a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1495a30f8f8cSSatish Balay     info->memory       = irecv[3];
1496a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
149798921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1498a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1499a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1500a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
15013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1502a30f8f8cSSatish Balay }
1503a30f8f8cSSatish Balay 
150466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1505d71ae5a4SJacob Faibussowitsch {
1506a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1507d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1508a30f8f8cSSatish Balay 
1509a30f8f8cSSatish Balay   PetscFunctionBegin;
1510e98b92d7SKris Buschelman   switch (op) {
1511512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1512e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
151328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1514a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1515c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1516e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
151743674050SBarry Smith     MatCheckPreallocated(A, 1);
15189566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15199566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1520e98b92d7SKris Buschelman     break;
1521e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
152243674050SBarry Smith     MatCheckPreallocated(A, 1);
15234e0d8c25SBarry Smith     a->roworiented = flg;
152426fbe8dcSKarl Rupp 
15259566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15269566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1527e98b92d7SKris Buschelman     break;
15288c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1529d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1530d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1531d71ae5a4SJacob Faibussowitsch     break;
1532d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1533d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1534d71ae5a4SJacob Faibussowitsch     break;
1535d71ae5a4SJacob Faibussowitsch   case MAT_USE_HASH_TABLE:
1536d71ae5a4SJacob Faibussowitsch     a->ht_flag = flg;
1537d71ae5a4SJacob Faibussowitsch     break;
1538d71ae5a4SJacob Faibussowitsch   case MAT_HERMITIAN:
1539d71ae5a4SJacob Faibussowitsch     MatCheckPreallocated(A, 1);
1540d71ae5a4SJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15410f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1542eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1543547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1544eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1545eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1546eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1547b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1548eb1ec7c1SStefano Zampini     }
15490f2140c7SStefano Zampini #endif
1550eeffb40dSHong Zhang     break;
1551ffa07934SHong Zhang   case MAT_SPD:
1552d71ae5a4SJacob Faibussowitsch   case MAT_SYMMETRIC:
1553d71ae5a4SJacob Faibussowitsch     MatCheckPreallocated(A, 1);
1554d71ae5a4SJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1555eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1556eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1557eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1558eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1559eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1560eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1561eb1ec7c1SStefano Zampini     }
1562eb1ec7c1SStefano Zampini #endif
1563eeffb40dSHong Zhang     break;
156477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
156543674050SBarry Smith     MatCheckPreallocated(A, 1);
15669566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1567eeffb40dSHong Zhang     break;
15689a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1569b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
15705f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric");
15719566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
157277e54ba9SKris Buschelman     break;
1573d71ae5a4SJacob Faibussowitsch   case MAT_SPD_ETERNAL:
1574d71ae5a4SJacob Faibussowitsch     break;
1575d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_LOWER_TRIANGULAR:
1576d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1577d71ae5a4SJacob Faibussowitsch     break;
1578d71ae5a4SJacob Faibussowitsch   case MAT_ERROR_LOWER_TRIANGULAR:
1579d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1580d71ae5a4SJacob Faibussowitsch     break;
1581d71ae5a4SJacob Faibussowitsch   case MAT_GETROW_UPPERTRIANGULAR:
1582d71ae5a4SJacob Faibussowitsch     aA->getrow_utriangular = flg;
1583d71ae5a4SJacob Faibussowitsch     break;
1584d71ae5a4SJacob Faibussowitsch   default:
1585d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
1586a30f8f8cSSatish Balay   }
15873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1588a30f8f8cSSatish Balay }
1589a30f8f8cSSatish Balay 
159066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1591d71ae5a4SJacob Faibussowitsch {
1592a30f8f8cSSatish Balay   PetscFunctionBegin;
15937fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1594cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15959566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1596cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
15979566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1598fc4dec0aSBarry Smith   }
15993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1600a30f8f8cSSatish Balay }
1601a30f8f8cSSatish Balay 
160266976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1603d71ae5a4SJacob Faibussowitsch {
1604a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1605a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
16065e90f9d9SHong Zhang   PetscInt      nv, m, n;
1607ace3abfcSBarry Smith   PetscBool     flg;
1608a30f8f8cSSatish Balay 
1609a30f8f8cSSatish Balay   PetscFunctionBegin;
1610a30f8f8cSSatish Balay   if (ll != rr) {
16119566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
16125f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1613a30f8f8cSSatish Balay   }
16143ba16761SJacob Faibussowitsch   if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1615b3bf805bSHong Zhang 
16169566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
16175f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1618b3bf805bSHong Zhang 
16199566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
16205f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
16215e90f9d9SHong Zhang 
16229566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
16235e90f9d9SHong Zhang 
16245e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1625dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16265e90f9d9SHong Zhang 
16275e90f9d9SHong Zhang   /* scale the diagonal part */
1628dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1629a30f8f8cSSatish Balay 
16305e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
16319566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1632dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
16333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1634a30f8f8cSSatish Balay }
1635a30f8f8cSSatish Balay 
163666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1637d71ae5a4SJacob Faibussowitsch {
1638f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1639a30f8f8cSSatish Balay 
1640a30f8f8cSSatish Balay   PetscFunctionBegin;
16419566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
16423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1643a30f8f8cSSatish Balay }
1644a30f8f8cSSatish Balay 
16456849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1646a30f8f8cSSatish Balay 
164766976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1648d71ae5a4SJacob Faibussowitsch {
1649a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1650a30f8f8cSSatish Balay   Mat           a, b, c, d;
1651ace3abfcSBarry Smith   PetscBool     flg;
1652a30f8f8cSSatish Balay 
1653a30f8f8cSSatish Balay   PetscFunctionBegin;
16549371c9d4SSatish Balay   a = matA->A;
16559371c9d4SSatish Balay   b = matA->B;
16569371c9d4SSatish Balay   c = matB->A;
16579371c9d4SSatish Balay   d = matB->B;
1658a30f8f8cSSatish Balay 
16599566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
166048a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
16611c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663a30f8f8cSSatish Balay }
1664a30f8f8cSSatish Balay 
166566976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1666d71ae5a4SJacob Faibussowitsch {
16674c7a3774SStefano Zampini   PetscBool isbaij;
16683c896bc6SHong Zhang 
16693c896bc6SHong Zhang   PetscFunctionBegin;
16709566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16715f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16723c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16733c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16749566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16759566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
16769566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16773c896bc6SHong Zhang   } else {
16784c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16794c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16804c7a3774SStefano Zampini 
16819566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
16829566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
16833c896bc6SHong Zhang   }
16849566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16863c896bc6SHong Zhang }
16873c896bc6SHong Zhang 
168866976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1689d71ae5a4SJacob Faibussowitsch {
16904fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16914fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
16924fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
16934fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
16944fe895cdSHong Zhang 
16954fe895cdSHong Zhang   PetscFunctionBegin;
16964fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16974fe895cdSHong Zhang     PetscScalar alpha = a;
16984fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
16994fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
17009566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1701792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
17024fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
17034fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
17049566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1705792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
17069566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1707ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
17089566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
17099566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
17109566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
17114fe895cdSHong Zhang   } else {
17124de5dceeSHong Zhang     Mat       B;
17134de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
17145f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
17159566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
17169566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
17179566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
17189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
17199566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
17209566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
17219566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
17229566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
17239566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
17249566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
17259566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
17269566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
17279566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
17289566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
17299566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
17309566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
17319566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
17329566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
17334fe895cdSHong Zhang   }
17343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17354fe895cdSHong Zhang }
17364fe895cdSHong Zhang 
173766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1738d71ae5a4SJacob Faibussowitsch {
17391302d50aSBarry Smith   PetscInt  i;
1740afebec48SHong Zhang   PetscBool flg;
1741a5e6ed63SBarry Smith 
17426849ba73SBarry Smith   PetscFunctionBegin;
17439566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1744a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
17459566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
174648a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17474dcd73b1SHong Zhang   }
17483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1749a5e6ed63SBarry Smith }
1750a5e6ed63SBarry Smith 
175166976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1752d71ae5a4SJacob Faibussowitsch {
17537d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17546f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
17557d68702bSBarry Smith 
17567d68702bSBarry Smith   PetscFunctionBegin;
17576f33a894SBarry Smith   if (!Y->preallocated) {
17589566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17596f33a894SBarry Smith   } else if (!aij->nz) {
1760b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17619566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1762b83222d8SBarry Smith     aij->nonew = nonew;
17637d68702bSBarry Smith   }
17649566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17667d68702bSBarry Smith }
17677d68702bSBarry Smith 
176866976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d)
1769d71ae5a4SJacob Faibussowitsch {
17703b49f96aSBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
17713b49f96aSBarry Smith 
17723b49f96aSBarry Smith   PetscFunctionBegin;
17735f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
17749566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
17753b49f96aSBarry Smith   if (d) {
17763b49f96aSBarry Smith     PetscInt rstart;
17779566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
17783b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
17793b49f96aSBarry Smith   }
17803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17813b49f96aSBarry Smith }
17823b49f96aSBarry Smith 
178366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1784d71ae5a4SJacob Faibussowitsch {
1785a5b7ff6bSBarry Smith   PetscFunctionBegin;
1786a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
17873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1788a5b7ff6bSBarry Smith }
17893b49f96aSBarry Smith 
179017ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
179117ea310bSPierre Jolivet {
179217ea310bSPierre Jolivet   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
179317ea310bSPierre Jolivet 
179417ea310bSPierre Jolivet   PetscFunctionBegin;
179517ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep));       // possibly keep zero diagonal coefficients
179617ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
179717ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
179817ea310bSPierre Jolivet }
179917ea310bSPierre Jolivet 
18006cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer);
1801789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]);
1802789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
18036cff0a6bSPierre Jolivet 
18043964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1805a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1806a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1807a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
180897304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1809431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1810431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
1814f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1815f4259b30SLisandro Dalcin                                        NULL,
1816f4259b30SLisandro Dalcin                                        NULL,
181741f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1818a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
181997304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1820a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1821a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1822a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1823a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
182497304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1825a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1826a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1827a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1828f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        NULL,
1831f4259b30SLisandro Dalcin                                        NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
183326cec326SBarry Smith                                        /* 29*/ MatSetUp_MPI_Hash,
1834f4259b30SLisandro Dalcin                                        NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1837f4259b30SLisandro Dalcin                                        NULL,
1838d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1839f4259b30SLisandro Dalcin                                        NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
18447dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1845d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1846a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18473c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1848f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1849a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18507d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1859f4259b30SLisandro Dalcin                                        NULL,
1860a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1861f4259b30SLisandro Dalcin                                        NULL,
1862a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18637dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1864f4259b30SLisandro Dalcin                                        NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
1868f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873d519adbfSMatthew Knepley                                        /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1874f4259b30SLisandro Dalcin                                        NULL,
187528d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1879f4259b30SLisandro Dalcin                                        NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1884f4259b30SLisandro Dalcin                                        NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
18875bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1888f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1904f4259b30SLisandro Dalcin                                        NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
19062726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        /*104*/ NULL,
190999cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1910d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1911d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
191295936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1913f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1914f4259b30SLisandro Dalcin                                        NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
19173b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1918f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1919f4259b30SLisandro Dalcin                                        NULL,
1920f4259b30SLisandro Dalcin                                        NULL,
1921f4259b30SLisandro Dalcin                                        NULL,
1922f4259b30SLisandro Dalcin                                        NULL,
1923f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1924f4259b30SLisandro Dalcin                                        NULL,
1925f4259b30SLisandro Dalcin                                        NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
1927f4259b30SLisandro Dalcin                                        NULL,
1928f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1929f4259b30SLisandro Dalcin                                        NULL,
1930f4259b30SLisandro Dalcin                                        NULL,
1931f4259b30SLisandro Dalcin                                        NULL,
1932f4259b30SLisandro Dalcin                                        NULL,
1933f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1934f4259b30SLisandro Dalcin                                        NULL,
1935f4259b30SLisandro Dalcin                                        NULL,
1936f4259b30SLisandro Dalcin                                        NULL,
1937f4259b30SLisandro Dalcin                                        NULL,
1938f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1939f4259b30SLisandro Dalcin                                        NULL,
1940f4259b30SLisandro Dalcin                                        NULL,
1941f4259b30SLisandro Dalcin                                        NULL,
1942f4259b30SLisandro Dalcin                                        NULL,
194346533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
1944f4259b30SLisandro Dalcin                                        NULL,
1945f4259b30SLisandro Dalcin                                        NULL,
1946f4259b30SLisandro Dalcin                                        NULL,
1947f4259b30SLisandro Dalcin                                        NULL,
1948d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1949d70f29a3SPierre Jolivet                                        NULL,
1950d70f29a3SPierre Jolivet                                        NULL,
195199a7f59eSMark Adams                                        NULL,
195299a7f59eSMark Adams                                        NULL,
19537fb60732SBarry Smith                                        NULL,
1954dec0b466SHong Zhang                                        /*150*/ NULL,
1955eede4a3fSMark Adams                                        MatEliminateZeros_MPISBAIJ,
1956eede4a3fSMark Adams                                        NULL};
1957a30f8f8cSSatish Balay 
195866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1959d71ae5a4SJacob Faibussowitsch {
1960476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1961535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
19625d2a9ed1SStefano Zampini   PetscMPIInt   size;
1963a23d5eceSKris Buschelman 
1964a23d5eceSKris Buschelman   PetscFunctionBegin;
1965ad79cf63SBarry Smith   if (B->hash_active) {
1966aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
1967ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
1968ad79cf63SBarry Smith   }
1969ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
19709566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
19719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19745f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19755f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1976899cda47SBarry Smith 
1977d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1978d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
19795f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1980a23d5eceSKris Buschelman 
1981d0f46423SBarry Smith   B->rmap->bs = bs;
1982a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1983a23d5eceSKris Buschelman   b->mbs      = mbs;
1984a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1985de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1986de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1987a23d5eceSKris Buschelman 
1988ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1989d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1990d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1991a23d5eceSKris Buschelman 
1992d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1993d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1994a23d5eceSKris Buschelman 
1995cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1996eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
1997cb7b82ddSBarry Smith #else
19989566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1999cb7b82ddSBarry Smith #endif
20009566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
20019566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
20029566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
20039566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
20049566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
20059566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
20069566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
20079566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
20089566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
2009cb7b82ddSBarry Smith 
20109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2011c508b908SBarry Smith 
2012c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
20139566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
20149566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
20159566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
20169566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2017c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2018cb7b82ddSBarry Smith 
2019c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2020ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
20219566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
20229566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
20239566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQSBAIJ));
2024c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2025a23d5eceSKris Buschelman 
20269566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
20279566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
202826fbe8dcSKarl Rupp 
2029526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2030cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2031cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
20323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2033a23d5eceSKris Buschelman }
2034a23d5eceSKris Buschelman 
203566976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2036d71ae5a4SJacob Faibussowitsch {
203702106b30SBarry Smith   PetscInt        m, rstart, cend;
2038f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2039f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2040f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2041bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
20423bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2043dfb205c3SBarry Smith 
2044dfb205c3SBarry Smith   PetscFunctionBegin;
20455f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
20469566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
20479566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
20489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
20499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
20509566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2051dfb205c3SBarry Smith   m      = B->rmap->n / bs;
2052dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
2053dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
2054dfb205c3SBarry Smith 
20555f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
20569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2057dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2058dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
20595f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20604cf0e950SBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */
2061dfb205c3SBarry Smith     JJ = jj + ii[i];
20620cd7f59aSBarry Smith     bd = 0;
2063dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
20640cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2065dfb205c3SBarry Smith       JJ++;
20660cd7f59aSBarry Smith       bd++;
2067dfb205c3SBarry Smith     }
2068dfb205c3SBarry Smith     d = 0;
2069dfb205c3SBarry Smith     for (; j < nz; j++) {
2070dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2071dfb205c3SBarry Smith       d++;
2072dfb205c3SBarry Smith     }
2073dfb205c3SBarry Smith     d_nnz[i] = d;
20740cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20750cd7f59aSBarry Smith     nz       = nz - bd;
20760cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
2077dfb205c3SBarry Smith   }
20789566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20799566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20809566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2081dfb205c3SBarry Smith 
2082dfb205c3SBarry Smith   values = (PetscScalar *)V;
208348a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2084dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2085dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
2086dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2087dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
2088bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2089dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
20909566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2091bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
2092bb80cfbbSStefano Zampini       PetscInt j;
20930cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
20940cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
20959566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
20960cd7f59aSBarry Smith       }
20970cd7f59aSBarry Smith     }
2098dfb205c3SBarry Smith   }
2099dfb205c3SBarry Smith 
21009566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
21013bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
21023bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
21039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21053bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
21063bd0feecSPierre Jolivet 
21079566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
21083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2109dfb205c3SBarry Smith }
2110dfb205c3SBarry Smith 
21110bad9183SKris Buschelman /*MC
2112fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2113828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2114828413b8SBarry Smith    the matrix is stored.
2115828413b8SBarry Smith 
2116828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
211711a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
21180bad9183SKris Buschelman 
21192ef1f0ffSBarry Smith    Options Database Key:
212011a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
21210bad9183SKris Buschelman 
21222ef1f0ffSBarry Smith    Level: beginner
21232ef1f0ffSBarry Smith 
212411a5261eSBarry Smith    Note:
2125476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2126476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2127476417e5SBarry Smith 
21281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
21290bad9183SKris Buschelman M*/
21300bad9183SKris Buschelman 
2131d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2132d71ae5a4SJacob Faibussowitsch {
2133b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
213494ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2135b5df2d14SHong Zhang 
2136b5df2d14SHong Zhang   PetscFunctionBegin;
21374dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2138b0a32e0cSBarry Smith   B->data   = (void *)b;
2139aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2140b5df2d14SHong Zhang 
2141b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2142b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2143b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2144b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
214526fbe8dcSKarl Rupp 
21469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
21479566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2148b5df2d14SHong Zhang 
2149b5df2d14SHong Zhang   /* build local table of row and column ownerships */
21509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2151b5df2d14SHong Zhang 
2152b5df2d14SHong Zhang   /* build cache for off array entries formed */
21539566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
215426fbe8dcSKarl Rupp 
2155b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21560298fd71SBarry Smith   b->colmap      = NULL;
21570298fd71SBarry Smith   b->garray      = NULL;
2158b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2159b5df2d14SHong Zhang 
2160b5df2d14SHong Zhang   /* stuff used in block assembly */
2161f4259b30SLisandro Dalcin   b->barray = NULL;
2162b5df2d14SHong Zhang 
2163b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2164f4259b30SLisandro Dalcin   b->lvec    = NULL;
2165f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2166f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2167f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2168f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2169f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2170f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2171f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2172b5df2d14SHong Zhang 
2173b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2174f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2175f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2176b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2177b5df2d14SHong Zhang 
2178b5df2d14SHong Zhang   /* hash table stuff */
2179f4259b30SLisandro Dalcin   b->ht           = NULL;
2180f4259b30SLisandro Dalcin   b->hd           = NULL;
2181b5df2d14SHong Zhang   b->ht_size      = 0;
2182b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2183b5df2d14SHong Zhang   b->ht_fact      = 0;
2184b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2185b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2186b5df2d14SHong Zhang 
21877dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21887a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21897a868f3eSHong Zhang 
2190f4259b30SLisandro Dalcin   b->in_loc = NULL;
2191f4259b30SLisandro Dalcin   b->v_loc  = NULL;
219259ffdab8SBarry Smith   b->n_loc  = 0;
219394ae4db5SBarry Smith 
21949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
21959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
21969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
21979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21986214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
22006214f412SHong Zhang #endif
2201d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
22029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2203d24d4204SJose E. Roman #endif
22049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
22059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2206aa5a9175SDahai Guo 
2207b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2208b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2209b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2210b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2211eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2212b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2213eb1ec7c1SStefano Zampini #else
2214b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2215eb1ec7c1SStefano Zampini #endif
221613647f61SHong Zhang 
22179566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2218d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
22199566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
222094ae4db5SBarry Smith   if (flg) {
222194ae4db5SBarry Smith     PetscReal fact = 1.39;
22229566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
22239566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
222494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
22259566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
22269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
222794ae4db5SBarry Smith   }
2228d0609cedSBarry Smith   PetscOptionsEnd();
22293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2230b5df2d14SHong Zhang }
2231b5df2d14SHong Zhang 
22322920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2233209238afSKris Buschelman /*MC
2234002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2235209238afSKris Buschelman 
223611a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
223711a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2238209238afSKris Buschelman 
223911a5261eSBarry Smith    Options Database Key:
2240c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2241209238afSKris Buschelman 
2242209238afSKris Buschelman   Level: beginner
2243209238afSKris Buschelman 
22441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2245209238afSKris Buschelman M*/
2246209238afSKris Buschelman 
2247b5df2d14SHong Zhang /*@C
2248b5df2d14SHong Zhang   MatMPISBAIJSetPreallocation - For good matrix assembly performance
2249b5df2d14SHong Zhang   the user should preallocate the matrix storage by setting the parameters
2250b5df2d14SHong Zhang   d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2251b5df2d14SHong Zhang   performance can be increased by more than a factor of 50.
2252b5df2d14SHong Zhang 
2253c3339decSBarry Smith   Collective
2254b5df2d14SHong Zhang 
2255b5df2d14SHong Zhang   Input Parameters:
22561c4f3114SJed Brown + B     - the matrix
2257bb7ae925SBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2258bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2259b5df2d14SHong Zhang . d_nz  - number of block nonzeros per block row in diagonal portion of local
2260b5df2d14SHong Zhang           submatrix  (same for all local rows)
2261b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22626d10fdaeSSatish Balay           in the upper triangular and diagonal part of the in diagonal portion of the local
22632ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.  If you plan to factor the matrix you must leave room
226495742e49SBarry Smith           for the diagonal entry and set a value even if it is zero.
2265b5df2d14SHong Zhang . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2266b5df2d14SHong Zhang           submatrix (same for all local rows).
2267b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2268c2fc9fa9SBarry Smith           off-diagonal portion of the local submatrix that is right of the diagonal
22692ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.
2270b5df2d14SHong Zhang 
2271b5df2d14SHong Zhang   Options Database Keys:
2272a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2273b5df2d14SHong Zhang                     block calculations (much slower)
2274a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2275b5df2d14SHong Zhang 
22762ef1f0ffSBarry Smith   Level: intermediate
22772ef1f0ffSBarry Smith 
2278b5df2d14SHong Zhang   Notes:
2279b5df2d14SHong Zhang 
228011a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2281b5df2d14SHong Zhang   than it must be used on all processors that share the object for that argument.
2282b5df2d14SHong Zhang 
228349a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
228449a6f317SBarry Smith 
2285b5df2d14SHong Zhang   Storage Information:
2286b5df2d14SHong Zhang   For a square global matrix we define each processor's diagonal portion
2287b5df2d14SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
2288b5df2d14SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
2289b5df2d14SHong Zhang   local matrix (a rectangular submatrix).
2290b5df2d14SHong Zhang 
2291b5df2d14SHong Zhang   The user can specify preallocated storage for the diagonal part of
22922ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
22932ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2294b5df2d14SHong Zhang   memory allocation.  Likewise, specify preallocated storage for the
22952ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2296b5df2d14SHong Zhang 
229711a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
2298aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
22992ef1f0ffSBarry Smith   You can also run with the option `-info` and look for messages with the string
2300aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
2301aa95bbe8SBarry Smith 
2302b5df2d14SHong Zhang   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2303b5df2d14SHong Zhang   the figure below we depict these three local rows and all columns (0-11).
2304b5df2d14SHong Zhang 
2305b5df2d14SHong Zhang .vb
2306b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2307a4b1a0f6SJed Brown           --------------------------
2308c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2309c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2310c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2311a4b1a0f6SJed Brown           --------------------------
2312b5df2d14SHong Zhang .ve
2313b5df2d14SHong Zhang 
2314b5df2d14SHong Zhang   Thus, any entries in the d locations are stored in the d (diagonal)
2315b5df2d14SHong Zhang   submatrix, and any entries in the o locations are stored in the
23166d10fdaeSSatish Balay   o (off-diagonal) submatrix.  Note that the d matrix is stored in
231711a5261eSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2318b5df2d14SHong Zhang 
23192ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
23206d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
23212ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2322c2fc9fa9SBarry Smith 
2323b5df2d14SHong Zhang   In general, for PDE problems in which most nonzeros are near the diagonal,
23242ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2325b5df2d14SHong Zhang 
23261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2327b5df2d14SHong Zhang @*/
2328d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2329d71ae5a4SJacob Faibussowitsch {
2330b5df2d14SHong Zhang   PetscFunctionBegin;
23316ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
23326ba663aaSJed Brown   PetscValidType(B, 1);
23336ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2334cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
23353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2336b5df2d14SHong Zhang }
2337b5df2d14SHong Zhang 
23382920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2339a30f8f8cSSatish Balay /*@C
234011a5261eSBarry Smith   MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2341a30f8f8cSSatish Balay   (block compressed row).  For good matrix assembly performance
2342a30f8f8cSSatish Balay   the user should preallocate the matrix storage by setting the parameters
234320f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2344a30f8f8cSSatish Balay 
2345d083f849SBarry Smith   Collective
2346a30f8f8cSSatish Balay 
2347a30f8f8cSSatish Balay   Input Parameters:
2348a30f8f8cSSatish Balay + comm  - MPI communicator
234911a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
235020f4b53cSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
235120f4b53cSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2352a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2353a30f8f8cSSatish Balay           y vector for the matrix-vector product y = Ax.
235420f4b53cSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2355a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2356a30f8f8cSSatish Balay           x vector for the matrix-vector product y = Ax.
235720f4b53cSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
235820f4b53cSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2359a30f8f8cSSatish Balay . d_nz  - number of block nonzeros per block row in diagonal portion of local
2360a30f8f8cSSatish Balay           submatrix (same for all local rows)
2361a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23626d10fdaeSSatish Balay           in the upper triangular portion of the in diagonal portion of the local
23632ef1f0ffSBarry Smith           (possibly different for each block block row) or `NULL`.
236495742e49SBarry Smith           If you plan to factor the matrix you must leave room for the diagonal entry and
236595742e49SBarry Smith           set its value even if it is zero.
2366a30f8f8cSSatish Balay . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2367a30f8f8cSSatish Balay           submatrix (same for all local rows).
2368a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2369a30f8f8cSSatish Balay           off-diagonal portion of the local submatrix (possibly different for
23702ef1f0ffSBarry Smith           each block row) or `NULL`.
2371a30f8f8cSSatish Balay 
2372a30f8f8cSSatish Balay   Output Parameter:
2373a30f8f8cSSatish Balay . A - the matrix
2374a30f8f8cSSatish Balay 
2375a30f8f8cSSatish Balay   Options Database Keys:
2376a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2377a30f8f8cSSatish Balay                     block calculations (much slower)
2378a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2379a2b725a8SWilliam Gropp - -mat_mpi        - use the parallel matrix data structures even on one processor
2380a30f8f8cSSatish Balay                     (defaults to using SeqBAIJ format on one processor)
2381a30f8f8cSSatish Balay 
23822ef1f0ffSBarry Smith   Level: intermediate
23832ef1f0ffSBarry Smith 
23842ef1f0ffSBarry Smith   Notes:
238577433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2386f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
238711a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2388175b88e8SBarry Smith 
2389d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
23906d6d819aSHong Zhang   This matrix type does not support complex Hermitian operation.
2391d1be2dadSMatthew Knepley 
2392a30f8f8cSSatish Balay   The user MUST specify either the local or global matrix dimensions
2393a30f8f8cSSatish Balay   (possibly both).
2394a30f8f8cSSatish Balay 
239511a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2396a30f8f8cSSatish Balay   than it must be used on all processors that share the object for that argument.
2397a30f8f8cSSatish Balay 
2398727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by
2399727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
2400727bdf9bSBarry Smith 
240149a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
240249a6f317SBarry Smith 
2403a30f8f8cSSatish Balay   Storage Information:
2404a30f8f8cSSatish Balay   For a square global matrix we define each processor's diagonal portion
2405a30f8f8cSSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
2406a30f8f8cSSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
2407a30f8f8cSSatish Balay   local matrix (a rectangular submatrix).
2408a30f8f8cSSatish Balay 
2409a30f8f8cSSatish Balay   The user can specify preallocated storage for the diagonal part of
24102ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both). Set
24112ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2412a30f8f8cSSatish Balay   memory allocation. Likewise, specify preallocated storage for the
24132ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2414a30f8f8cSSatish Balay 
2415a30f8f8cSSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2416a30f8f8cSSatish Balay   the figure below we depict these three local rows and all columns (0-11).
2417a30f8f8cSSatish Balay 
2418a30f8f8cSSatish Balay .vb
2419a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2420a4b1a0f6SJed Brown           --------------------------
2421c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2422c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2423c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2424a4b1a0f6SJed Brown           --------------------------
2425a30f8f8cSSatish Balay .ve
2426a30f8f8cSSatish Balay 
2427a30f8f8cSSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
2428a30f8f8cSSatish Balay   submatrix, and any entries in the o locations are stored in the
24296d10fdaeSSatish Balay   o (off-diagonal) submatrix. Note that the d matrix is stored in
24302ef1f0ffSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2431a30f8f8cSSatish Balay 
24322ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
24336d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
24342ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2435a30f8f8cSSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
24362ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2437a30f8f8cSSatish Balay 
2438727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`,
2439727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
2440a30f8f8cSSatish Balay @*/
2441d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2442d71ae5a4SJacob Faibussowitsch {
24431302d50aSBarry Smith   PetscMPIInt size;
2444a30f8f8cSSatish Balay 
2445a30f8f8cSSatish Balay   PetscFunctionBegin;
24469566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
24479566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
24489566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2449273d9f13SBarry Smith   if (size > 1) {
24509566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
24519566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2452273d9f13SBarry Smith   } else {
24539566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
24549566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2455273d9f13SBarry Smith   }
24563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2457a30f8f8cSSatish Balay }
2458a30f8f8cSSatish Balay 
2459d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2460d71ae5a4SJacob Faibussowitsch {
2461a30f8f8cSSatish Balay   Mat           mat;
2462a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2463d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2464387bc808SHong Zhang   PetscScalar  *array;
2465a30f8f8cSSatish Balay 
2466a30f8f8cSSatish Balay   PetscFunctionBegin;
2467f4259b30SLisandro Dalcin   *newmat = NULL;
246826fbe8dcSKarl Rupp 
24699566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24709566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24719566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2474e1b6402fSHong Zhang 
2475420957c1SBarry Smith   if (matin->hash_active) {
2476420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2477420957c1SBarry Smith   } else {
2478d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
2479273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
248082327fa8SHong Zhang     mat->assembled    = PETSC_TRUE;
24817fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
24827fff6886SHong Zhang 
2483b5df2d14SHong Zhang     a      = (Mat_MPISBAIJ *)mat->data;
2484a30f8f8cSSatish Balay     a->bs2 = oldmat->bs2;
2485a30f8f8cSSatish Balay     a->mbs = oldmat->mbs;
2486a30f8f8cSSatish Balay     a->nbs = oldmat->nbs;
2487a30f8f8cSSatish Balay     a->Mbs = oldmat->Mbs;
2488a30f8f8cSSatish Balay     a->Nbs = oldmat->Nbs;
2489a30f8f8cSSatish Balay 
2490a30f8f8cSSatish Balay     a->size         = oldmat->size;
2491a30f8f8cSSatish Balay     a->rank         = oldmat->rank;
2492a30f8f8cSSatish Balay     a->donotstash   = oldmat->donotstash;
2493a30f8f8cSSatish Balay     a->roworiented  = oldmat->roworiented;
2494f4259b30SLisandro Dalcin     a->rowindices   = NULL;
2495f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
2496a30f8f8cSSatish Balay     a->getrowactive = PETSC_FALSE;
2497f4259b30SLisandro Dalcin     a->barray       = NULL;
2498899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
2499899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
2500899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
2501899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
2502a30f8f8cSSatish Balay 
2503a30f8f8cSSatish Balay     /* hash table stuff */
2504f4259b30SLisandro Dalcin     a->ht           = NULL;
2505f4259b30SLisandro Dalcin     a->hd           = NULL;
2506a30f8f8cSSatish Balay     a->ht_size      = 0;
2507a30f8f8cSSatish Balay     a->ht_flag      = oldmat->ht_flag;
2508a30f8f8cSSatish Balay     a->ht_fact      = oldmat->ht_fact;
2509a30f8f8cSSatish Balay     a->ht_total_ct  = 0;
2510a30f8f8cSSatish Balay     a->ht_insert_ct = 0;
2511a30f8f8cSSatish Balay 
25129566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2513a30f8f8cSSatish Balay     if (oldmat->colmap) {
2514a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2515eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2516a30f8f8cSSatish Balay #else
25179566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
25189566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2519a30f8f8cSSatish Balay #endif
2520f4259b30SLisandro Dalcin     } else a->colmap = NULL;
2521387bc808SHong Zhang 
2522f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
25239566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
25249566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2525f4259b30SLisandro Dalcin     } else a->garray = NULL;
2526a30f8f8cSSatish Balay 
25279566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
25289566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
25299566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
253082327fa8SHong Zhang 
25319566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
25329566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2533387bc808SHong Zhang 
25349566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(a->slvec1, &nt));
25359566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec1, &array));
25369566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
25379566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
25389566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec1, &array));
25399566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec0, &array));
25409566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
25419566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec0, &array));
2542387bc808SHong Zhang 
2543387bc808SHong Zhang     /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
25449566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2545387bc808SHong Zhang     a->sMvctx = oldmat->sMvctx;
254682327fa8SHong Zhang 
25479566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
25489566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
2549420957c1SBarry Smith   }
25509566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2551a30f8f8cSSatish Balay   *newmat = mat;
25523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2553a30f8f8cSSatish Balay }
2554a30f8f8cSSatish Balay 
2555618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2556618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2557618cc2edSLisandro Dalcin 
25586cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2559d71ae5a4SJacob Faibussowitsch {
25607f489da9SVaclav Hapla   PetscBool isbinary;
256195936485SShri Abhyankar 
256295936485SShri Abhyankar   PetscFunctionBegin;
25639566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25645f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25659566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
256795936485SShri Abhyankar }
256895936485SShri Abhyankar 
2569789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2570d71ae5a4SJacob Faibussowitsch {
257124d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2572f4f49eeaSPierre Jolivet   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)a->B->data;
2573ca54ac64SHong Zhang   PetscReal     atmp;
257487828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
25751302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25761302d50aSBarry Smith   PetscMPIInt   rank, size;
25771302d50aSBarry Smith   PetscInt     *rowners_bs, dest, count, source;
257887828ca2SBarry Smith   PetscScalar  *va;
25798a1c53f2SBarry Smith   MatScalar    *ba;
2580f4c0e9e4SHong Zhang   MPI_Status    stat;
258124d5174aSHong Zhang 
258224d5174aSHong Zhang   PetscFunctionBegin;
25835f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25849566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25859566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2586f4c0e9e4SHong Zhang 
25879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2589f4c0e9e4SHong Zhang 
2590d0f46423SBarry Smith   bs  = A->rmap->bs;
2591f4c0e9e4SHong Zhang   mbs = a->mbs;
2592f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2593f4c0e9e4SHong Zhang   ba  = b->a;
2594f4c0e9e4SHong Zhang   bi  = b->i;
2595f4c0e9e4SHong Zhang   bj  = b->j;
2596f4c0e9e4SHong Zhang 
2597f4c0e9e4SHong Zhang   /* find ownerships */
2598d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2599f4c0e9e4SHong Zhang 
2600f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
26019566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2602f4c0e9e4SHong Zhang 
2603f4c0e9e4SHong Zhang   /* row_max for B */
2604b8475685SHong Zhang   if (rank != size - 1) {
2605f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
26069371c9d4SSatish Balay       ncols = bi[1] - bi[0];
26079371c9d4SSatish Balay       bi++;
2608f4c0e9e4SHong Zhang       brow = bs * i;
2609f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2610f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2611f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2612ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
261304d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2614f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
26159371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
26169371c9d4SSatish Balay             ba++;
2617ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2618ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2619f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2620f4c0e9e4SHong Zhang           }
2621f4c0e9e4SHong Zhang         }
2622f4c0e9e4SHong Zhang         bj++;
2623f4c0e9e4SHong Zhang       }
2624f4c0e9e4SHong Zhang     }
2625f4c0e9e4SHong Zhang 
2626f4c0e9e4SHong Zhang     /* send values to its owners */
2627f4c0e9e4SHong Zhang     for (dest = rank + 1; dest < size; dest++) {
2628f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2629ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
26309566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2631ca54ac64SHong Zhang     }
2632f4c0e9e4SHong Zhang   }
2633f4c0e9e4SHong Zhang 
2634f4c0e9e4SHong Zhang   /* receive values */
2635ca54ac64SHong Zhang   if (rank) {
2636f4c0e9e4SHong Zhang     rvalues = work;
2637ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2638f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
26399566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2640f4c0e9e4SHong Zhang       /* process values */
2641f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2642ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2643f4c0e9e4SHong Zhang       }
2644f4c0e9e4SHong Zhang     }
2645ca54ac64SHong Zhang   }
2646f4c0e9e4SHong Zhang 
26479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
26489566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
26493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
265024d5174aSHong Zhang }
26512798e883SHong Zhang 
2652789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2653d71ae5a4SJacob Faibussowitsch {
26542798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2655d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
26563649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2657ffe4fb16SHong Zhang   Vec                bb1;
26583649974fSBarry Smith   const PetscScalar *b;
2659ffe4fb16SHong Zhang 
2660ffe4fb16SHong Zhang   PetscFunctionBegin;
26615f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26625f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2663ffe4fb16SHong Zhang 
2664a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26659566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2667a2b30743SBarry Smith   }
2668a2b30743SBarry Smith 
2669ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2670ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26719566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2672ffe4fb16SHong Zhang       its--;
2673ffe4fb16SHong Zhang     }
2674ffe4fb16SHong Zhang 
26759566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2676ffe4fb16SHong Zhang     while (its--) {
2677ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26789566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2679ffe4fb16SHong Zhang 
2680ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26819566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
26829566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26839566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26849566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2685ffe4fb16SHong Zhang 
26869566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2687ffe4fb16SHong Zhang 
2688ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26899566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
26909566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26919566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26929566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2693ffe4fb16SHong Zhang 
2694ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2695629a200eSBarry Smith       PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2696629a200eSBarry Smith       PetscCall(VecZeroEntries(mat->slvec1b));
2697ffe4fb16SHong Zhang 
26989566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26999566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
27009566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27019566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2702ffe4fb16SHong Zhang 
2703ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
27049566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2705ffe4fb16SHong Zhang 
2706ffe4fb16SHong Zhang       /* local diagonal sweep */
27079566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2708ffe4fb16SHong Zhang     }
27099566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2710fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
27119566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2712fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
27139566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2714fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2715fa22f6d0SBarry Smith     Vec                xx1;
2716ace3abfcSBarry Smith     PetscBool          hasop;
271720f1ed55SBarry Smith     const PetscScalar *diag;
2718887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
271920f1ed55SBarry Smith     PetscInt           i, n;
2720fa22f6d0SBarry Smith 
2721fa22f6d0SBarry Smith     if (!mat->xx1) {
27229566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
27239566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2724fa22f6d0SBarry Smith     }
2725fa22f6d0SBarry Smith     xx1 = mat->xx1;
2726fa22f6d0SBarry Smith     bb1 = mat->bb1;
2727fa22f6d0SBarry Smith 
27289566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2729fa22f6d0SBarry Smith 
2730fa22f6d0SBarry Smith     if (!mat->diag) {
2731effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27329566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
27339566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2734fa22f6d0SBarry Smith     }
27359566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2736fa22f6d0SBarry Smith 
2737fa22f6d0SBarry Smith     if (hasop) {
27389566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
27399566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
274020f1ed55SBarry Smith     } else {
274120f1ed55SBarry Smith       /*
274220f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
27439566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
27449566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
274520f1ed55SBarry Smith       */
27469566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
27479566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
27489566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
27499566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
27509566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2751887ee2caSBarry Smith       if (omega == 1.0) {
275226fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
27539566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2754887ee2caSBarry Smith       } else {
275526fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
27569566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2757887ee2caSBarry Smith       }
27589566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
27599566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
27609566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27619566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
276220f1ed55SBarry Smith     }
2763fa22f6d0SBarry Smith 
2764fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2765629a200eSBarry Smith     PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2766629a200eSBarry Smith     PetscCall(VecZeroEntries(mat->slvec1b));
27679566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27689566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
27699566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
27709566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
27719566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
27729566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
27739566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27749566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27759566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2776fa22f6d0SBarry Smith 
2777fa22f6d0SBarry Smith     /* local sweep */
27789566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27799566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2780f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2782ffe4fb16SHong Zhang }
2783ffe4fb16SHong Zhang 
2784dfb205c3SBarry Smith /*@
2785d8a51d2aSBarry Smith   MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows.
2786dfb205c3SBarry Smith 
2787d083f849SBarry Smith   Collective
2788dfb205c3SBarry Smith 
2789dfb205c3SBarry Smith   Input Parameters:
2790dfb205c3SBarry Smith + comm - MPI communicator
2791dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
279211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
2793dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
2794d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
27952ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
27962ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
27972ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2798483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2799dfb205c3SBarry Smith . j    - column indices
2800dfb205c3SBarry Smith - a    - matrix values
2801dfb205c3SBarry Smith 
2802dfb205c3SBarry Smith   Output Parameter:
2803dfb205c3SBarry Smith . mat - the matrix
2804dfb205c3SBarry Smith 
2805dfb205c3SBarry Smith   Level: intermediate
2806dfb205c3SBarry Smith 
2807dfb205c3SBarry Smith   Notes:
28082ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
28092ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `a` after you have
28102ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2811dfb205c3SBarry Smith 
28122ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2813dfb205c3SBarry Smith 
28141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2815d8a51d2aSBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()`
2816dfb205c3SBarry Smith @*/
2817d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2818d71ae5a4SJacob Faibussowitsch {
2819dfb205c3SBarry Smith   PetscFunctionBegin;
28205f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
28215f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
28229566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
28239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
28249566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
28259566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
28263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2827dfb205c3SBarry Smith }
2828dfb205c3SBarry Smith 
2829dfb205c3SBarry Smith /*@C
283011a5261eSBarry Smith   MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2831dfb205c3SBarry Smith 
2832d083f849SBarry Smith   Collective
2833dfb205c3SBarry Smith 
2834dfb205c3SBarry Smith   Input Parameters:
28351c4f3114SJed Brown + B  - the matrix
2836dfb205c3SBarry Smith . bs - the block size
2837d8a51d2aSBarry Smith . i  - the indices into `j` for the start of each local row (indices start with zero)
2838d8a51d2aSBarry Smith . j  - the column indices for each local row (indices start with zero) these must be sorted for each row
2839d8a51d2aSBarry Smith - v  - optional values in the matrix, pass `NULL` if not provided
2840dfb205c3SBarry Smith 
2841664954b6SBarry Smith   Level: advanced
2842664954b6SBarry Smith 
2843664954b6SBarry Smith   Notes:
2844d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2845d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2846d8a51d2aSBarry Smith   called this routine.
2847d8a51d2aSBarry Smith 
28480cd7f59aSBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28490cd7f59aSBarry Smith   and usually the numerical values as well
28500cd7f59aSBarry Smith 
2851d8a51d2aSBarry Smith   Any entries passed in that are below the diagonal are ignored
2852dfb205c3SBarry Smith 
2853d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`,
2854d8a51d2aSBarry Smith           `MatCreateMPISBAIJWithArrays()`
2855dfb205c3SBarry Smith @*/
2856d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2857d71ae5a4SJacob Faibussowitsch {
2858dfb205c3SBarry Smith   PetscFunctionBegin;
2859cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
28603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2861dfb205c3SBarry Smith }
2862dfb205c3SBarry Smith 
2863d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2864d71ae5a4SJacob Faibussowitsch {
286510c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
286610c56fdeSHong Zhang   PetscInt    *indx;
286710c56fdeSHong Zhang   PetscScalar *values;
2868dfb205c3SBarry Smith 
28694dcd73b1SHong Zhang   PetscFunctionBegin;
28709566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
287110c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
287210c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2873de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
287410c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2875de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
28764dcd73b1SHong Zhang 
28779566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28789371c9d4SSatish Balay     mbs = m / bs;
28799371c9d4SSatish Balay     Nbs = N / cbs;
288048a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2881da91a574SPierre Jolivet     nbs = n / cbs;
28824dcd73b1SHong Zhang 
28839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2884d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2885de25e9cbSPierre Jolivet 
28869566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
28879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2888de25e9cbSPierre Jolivet     if (rank == size - 1) {
2889de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28905f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2891de25e9cbSPierre Jolivet     }
2892de25e9cbSPierre Jolivet 
2893d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28949566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
289510c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
28969566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
28974dcd73b1SHong Zhang       nnz = nnz / bs;
28984dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
28999566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
29009566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
29014dcd73b1SHong Zhang     }
29029566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
29039566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
29044dcd73b1SHong Zhang 
29059566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
29069566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
29079566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
29089566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
29099566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
29109566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2911d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
29124dcd73b1SHong Zhang   }
29134dcd73b1SHong Zhang 
291410c56fdeSHong Zhang   /* numeric phase */
29159566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
29169566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
29174dcd73b1SHong Zhang 
29189566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
29194dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
29209566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
29214dcd73b1SHong Zhang     Ii = i + rstart;
29229566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
29239566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
29244dcd73b1SHong Zhang   }
29259566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
29269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
29279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
29283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29294dcd73b1SHong Zhang }
2930