1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237a30f8f8cSSatish Balay a_noinsert:; \ 238a30f8f8cSSatish Balay ailen[brow] = nrow; \ 239a8f51744SPierre Jolivet } while (0) 240e5e170daSBarry Smith 241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 242a8f51744SPierre Jolivet do { \ 243a30f8f8cSSatish Balay brow = row / bs; \ 2449371c9d4SSatish Balay rp = bj + bi[brow]; \ 2459371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2469371c9d4SSatish Balay rmax = bimax[brow]; \ 2479371c9d4SSatish Balay nrow = bilen[brow]; \ 248a30f8f8cSSatish Balay bcol = col / bs; \ 2499371c9d4SSatish Balay ridx = row % bs; \ 2509371c9d4SSatish Balay cidx = col % bs; \ 2519371c9d4SSatish Balay low = 0; \ 2529371c9d4SSatish Balay high = nrow; \ 253a30f8f8cSSatish Balay while (high - low > 3) { \ 254a30f8f8cSSatish Balay t = (low + high) / 2; \ 255a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 256a30f8f8cSSatish Balay else low = t; \ 257a30f8f8cSSatish Balay } \ 258a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 259a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 260a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 261a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 262a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 263a30f8f8cSSatish Balay else *bap = value; \ 264a30f8f8cSSatish Balay goto b_noinsert; \ 265a30f8f8cSSatish Balay } \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2685f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 269fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 270a30f8f8cSSatish Balay N = nrow++ - 1; \ 271a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 275a30f8f8cSSatish Balay rp[_i] = bcol; \ 276a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 277a30f8f8cSSatish Balay b_noinsert:; \ 278a30f8f8cSSatish Balay bilen[brow] = nrow; \ 279a8f51744SPierre Jolivet } while (0) 280a30f8f8cSSatish Balay 281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 282da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 283a30f8f8cSSatish Balay */ 28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 285d71ae5a4SJacob Faibussowitsch { 286a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 287a30f8f8cSSatish Balay MatScalar value; 288ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2891302d50aSBarry Smith PetscInt i, j, row, col; 290d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 291d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 292d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 293a30f8f8cSSatish Balay 294a30f8f8cSSatish Balay /* Some Variables required in the macro */ 295a30f8f8cSSatish Balay Mat A = baij->A; 29657508eceSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 2971302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 298a30f8f8cSSatish Balay MatScalar *aa = a->a; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay Mat B = baij->B; 30157508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 3021302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 303a30f8f8cSSatish Balay MatScalar *ba = b->a; 304a30f8f8cSSatish Balay 3051302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3061302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 307a30f8f8cSSatish Balay MatScalar *ap, *bap; 308a30f8f8cSSatish Balay 309a30f8f8cSSatish Balay /* for stash */ 3100298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3110298fd71SBarry Smith MatScalar *v_loc = NULL; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 314a30f8f8cSSatish Balay if (!baij->donotstash) { 31559ffdab8SBarry Smith if (n > baij->n_loc) { 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32026fbe8dcSKarl Rupp 32159ffdab8SBarry Smith baij->n_loc = n; 32259ffdab8SBarry Smith } 32359ffdab8SBarry Smith in_loc = baij->in_loc; 32459ffdab8SBarry Smith v_loc = baij->v_loc; 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay 327a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 328a30f8f8cSSatish Balay if (im[i] < 0) continue; 3295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 330a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 331a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 332a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33301b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 334966bd95aSPierre Jolivet PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33601b2bd88SHong Zhang } 337a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 338a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3399371c9d4SSatish Balay brow = row / bs; 3409371c9d4SSatish Balay bcol = col / bs; 341a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 342db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 343db4deed7SKarl Rupp else value = v[i + j * m]; 344d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3459566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 346f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 347f7d195e4SLawrence Mitchell continue; 348f7d195e4SLawrence Mitchell } else { 349f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 350f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 351a30f8f8cSSatish Balay if (mat->was_assembled) { 35248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 353a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 354eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35571730473SSatish Balay col = col - 1; 356a30f8f8cSSatish Balay #else 35771730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 358a30f8f8cSSatish Balay #endif 359f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) { 3609566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 361a30f8f8cSSatish Balay col = in[j]; 362a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 363a30f8f8cSSatish Balay B = baij->B; 36457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 3659371c9d4SSatish Balay bimax = b->imax; 3669371c9d4SSatish Balay bi = b->i; 3679371c9d4SSatish Balay bilen = b->ilen; 3689371c9d4SSatish Balay bj = b->j; 369a30f8f8cSSatish Balay ba = b->a; 37071730473SSatish Balay } else col += in[j] % bs; 371a30f8f8cSSatish Balay } else col = in[j]; 372db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 373db4deed7SKarl Rupp else value = v[i + j * m]; 374d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3759566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 376a30f8f8cSSatish Balay } 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } else { /* off processor entry */ 3795f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 380a30f8f8cSSatish Balay if (!baij->donotstash) { 3815080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 382a30f8f8cSSatish Balay n_loc = 0; 383a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 384f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 385a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 386a30f8f8cSSatish Balay if (roworiented) { 387a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 388a30f8f8cSSatish Balay } else { 389a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 390a30f8f8cSSatish Balay } 391a30f8f8cSSatish Balay n_loc++; 392a30f8f8cSSatish Balay } 3939566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 3973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay 400d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 401d71ae5a4SJacob Faibussowitsch { 40236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40336bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40436bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40536bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40636bd2089SBarry Smith PetscBool roworiented = a->roworiented; 40736bd2089SBarry Smith const PetscScalar *value = v; 40836bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 40936bd2089SBarry Smith 41036bd2089SBarry Smith PetscFunctionBegin; 41136bd2089SBarry Smith if (col < row) { 412966bd95aSPierre Jolivet PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 413966bd95aSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41436bd2089SBarry Smith } 41536bd2089SBarry Smith rp = aj + ai[row]; 41636bd2089SBarry Smith ap = aa + bs2 * ai[row]; 41736bd2089SBarry Smith rmax = imax[row]; 41836bd2089SBarry Smith nrow = ailen[row]; 41936bd2089SBarry Smith value = v; 42036bd2089SBarry Smith low = 0; 42136bd2089SBarry Smith high = nrow; 42236bd2089SBarry Smith 42336bd2089SBarry Smith while (high - low > 7) { 42436bd2089SBarry Smith t = (low + high) / 2; 42536bd2089SBarry Smith if (rp[t] > col) high = t; 42636bd2089SBarry Smith else low = t; 42736bd2089SBarry Smith } 42836bd2089SBarry Smith for (i = low; i < high; i++) { 42936bd2089SBarry Smith if (rp[i] > col) break; 43036bd2089SBarry Smith if (rp[i] == col) { 43136bd2089SBarry Smith bap = ap + bs2 * i; 43236bd2089SBarry Smith if (roworiented) { 43336bd2089SBarry Smith if (is == ADD_VALUES) { 43436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 435ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43636bd2089SBarry Smith } 43736bd2089SBarry Smith } else { 43836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 439ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44036bd2089SBarry Smith } 44136bd2089SBarry Smith } 44236bd2089SBarry Smith } else { 44336bd2089SBarry Smith if (is == ADD_VALUES) { 44436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 445ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44636bd2089SBarry Smith } 44736bd2089SBarry Smith } else { 44836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 449ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45036bd2089SBarry Smith } 45136bd2089SBarry Smith } 45236bd2089SBarry Smith } 45336bd2089SBarry Smith goto noinsert2; 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4575f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 45836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4599371c9d4SSatish Balay N = nrow++ - 1; 4609371c9d4SSatish Balay high++; 46136bd2089SBarry Smith /* shift up all the later entries in this row */ 4629566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46436bd2089SBarry Smith rp[i] = col; 46536bd2089SBarry Smith bap = ap + bs2 * i; 46636bd2089SBarry Smith if (roworiented) { 46736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 468ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } else { 47136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 472ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47336bd2089SBarry Smith } 47436bd2089SBarry Smith } 47536bd2089SBarry Smith noinsert2:; 47636bd2089SBarry Smith ailen[row] = nrow; 4773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47836bd2089SBarry Smith } 47936bd2089SBarry Smith 48036bd2089SBarry Smith /* 48136bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48236bd2089SBarry Smith */ 483d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 484d71ae5a4SJacob Faibussowitsch { 48536bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 48736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 48836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 48936bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49036bd2089SBarry Smith const PetscScalar *value = v; 49136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49236bd2089SBarry Smith 49336bd2089SBarry Smith PetscFunctionBegin; 49436bd2089SBarry Smith rp = aj + ai[row]; 49536bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49636bd2089SBarry Smith rmax = imax[row]; 49736bd2089SBarry Smith nrow = ailen[row]; 49836bd2089SBarry Smith low = 0; 49936bd2089SBarry Smith high = nrow; 50036bd2089SBarry Smith value = v; 50136bd2089SBarry Smith while (high - low > 7) { 50236bd2089SBarry Smith t = (low + high) / 2; 50336bd2089SBarry Smith if (rp[t] > col) high = t; 50436bd2089SBarry Smith else low = t; 50536bd2089SBarry Smith } 50636bd2089SBarry Smith for (i = low; i < high; i++) { 50736bd2089SBarry Smith if (rp[i] > col) break; 50836bd2089SBarry Smith if (rp[i] == col) { 50936bd2089SBarry Smith bap = ap + bs2 * i; 51036bd2089SBarry Smith if (roworiented) { 51136bd2089SBarry Smith if (is == ADD_VALUES) { 51236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 513ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51436bd2089SBarry Smith } 51536bd2089SBarry Smith } else { 51636bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 517ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 51836bd2089SBarry Smith } 51936bd2089SBarry Smith } 52036bd2089SBarry Smith } else { 52136bd2089SBarry Smith if (is == ADD_VALUES) { 52236bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 523ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52436bd2089SBarry Smith bap += bs; 52536bd2089SBarry Smith } 52636bd2089SBarry Smith } else { 52736bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 528ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 52936bd2089SBarry Smith bap += bs; 53036bd2089SBarry Smith } 53136bd2089SBarry Smith } 53236bd2089SBarry Smith } 53336bd2089SBarry Smith goto noinsert2; 53436bd2089SBarry Smith } 53536bd2089SBarry Smith } 53636bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5375f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 53836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5399371c9d4SSatish Balay N = nrow++ - 1; 5409371c9d4SSatish Balay high++; 54136bd2089SBarry Smith /* shift up all the later entries in this row */ 5429566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5439566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54436bd2089SBarry Smith rp[i] = col; 54536bd2089SBarry Smith bap = ap + bs2 * i; 54636bd2089SBarry Smith if (roworiented) { 54736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 548ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 54936bd2089SBarry Smith } 55036bd2089SBarry Smith } else { 55136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 552ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55336bd2089SBarry Smith } 55436bd2089SBarry Smith } 55536bd2089SBarry Smith noinsert2:; 55636bd2089SBarry Smith ailen[row] = nrow; 5573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55836bd2089SBarry Smith } 55936bd2089SBarry Smith 56036bd2089SBarry Smith /* 56136bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56236bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56336bd2089SBarry Smith */ 56466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 565d71ae5a4SJacob Faibussowitsch { 5660880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 567f15d580aSBarry Smith const MatScalar *value; 568f15d580aSBarry Smith MatScalar *barray = baij->barray; 569ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 570899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 571476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 572476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5730880e062SHong Zhang 574a30f8f8cSSatish Balay PetscFunctionBegin; 5750880e062SHong Zhang if (!barray) { 5769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5770880e062SHong Zhang baij->barray = barray; 5780880e062SHong Zhang } 5790880e062SHong Zhang 5800880e062SHong Zhang if (roworiented) { 5810880e062SHong Zhang stepval = (n - 1) * bs; 5820880e062SHong Zhang } else { 5830880e062SHong Zhang stepval = (m - 1) * bs; 5840880e062SHong Zhang } 5850880e062SHong Zhang for (i = 0; i < m; i++) { 5860880e062SHong Zhang if (im[i] < 0) continue; 5876bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5880880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5890880e062SHong Zhang row = im[i] - rstart; 5900880e062SHong Zhang for (j = 0; j < n; j++) { 591f3f98c53SJed Brown if (im[i] > in[j]) { 592966bd95aSPierre Jolivet PetscCheck(ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 593966bd95aSPierre Jolivet continue; /* ignore lower triangular blocks */ 594f3f98c53SJed Brown } 5950880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 596966bd95aSPierre Jolivet if (roworiented && n == 1) { 597f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5980880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 599f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6000880e062SHong Zhang } else { /* Here a copy is required */ 6010880e062SHong Zhang if (roworiented) { 6020880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6030880e062SHong Zhang } else { 6040880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6050880e062SHong Zhang } 6060880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 607ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6080880e062SHong Zhang } 6090880e062SHong Zhang barray -= bs2; 6100880e062SHong Zhang } 6110880e062SHong Zhang 6120880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6130880e062SHong Zhang col = in[j] - cstart; 6149566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 615f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 616f7d195e4SLawrence Mitchell continue; 617f7d195e4SLawrence Mitchell } else { 618f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6190880e062SHong Zhang if (mat->was_assembled) { 62048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6210880e062SHong Zhang 6220880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 623eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 624b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 6250880e062SHong Zhang #else 626b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 6270880e062SHong Zhang #endif 628f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 6299566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6300880e062SHong Zhang col = in[j]; 6310880e062SHong Zhang } 63226fbe8dcSKarl Rupp } else col = in[j]; 6339566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6340880e062SHong Zhang } 6350880e062SHong Zhang } 6360880e062SHong Zhang } else { 6375f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6380880e062SHong Zhang if (!baij->donotstash) { 6390880e062SHong Zhang if (roworiented) { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410880e062SHong Zhang } else { 6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6430880e062SHong Zhang } 6440880e062SHong Zhang } 6450880e062SHong Zhang } 6460880e062SHong Zhang } 6473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 65066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 651d71ae5a4SJacob Faibussowitsch { 652f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 653d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 654d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay PetscFunctionBegin; 657a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 65854c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 65954c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 660966bd95aSPierre Jolivet PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 661a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 662a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 66354c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66454c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 665a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 666a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6679566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 668a30f8f8cSSatish Balay } else { 66948a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 670a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 671eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 672a30f8f8cSSatish Balay data--; 673a30f8f8cSSatish Balay #else 674a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 675a30f8f8cSSatish Balay #endif 676966bd95aSPierre Jolivet if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0; 677a30f8f8cSSatish Balay else { 678a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6799566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay } 6843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay 68766976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 688d71ae5a4SJacob Faibussowitsch { 689a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 690a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 691a30f8f8cSSatish Balay 692a30f8f8cSSatish Balay PetscFunctionBegin; 693a30f8f8cSSatish Balay if (baij->size == 1) { 6949566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 695a30f8f8cSSatish Balay } else { 696a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 6989566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 6999371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7009371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7019566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7029371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7039371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 704462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7058f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7069566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7070b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7080b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7090b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 710e91c04dfSPierre Jolivet PetscReal *rsum, vabs; 711899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 712d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7130b8dc8d2SHong Zhang MatScalar *v; 7140b8dc8d2SHong Zhang 715e91c04dfSPierre Jolivet PetscCall(PetscMalloc1(mat->cmap->N, &rsum)); 7169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7170b8dc8d2SHong Zhang /* Amat */ 7189371c9d4SSatish Balay v = amat->a; 7199371c9d4SSatish Balay jj = amat->j; 7200b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7210b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7220b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7230b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7249371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7259371c9d4SSatish Balay jj++; 7260b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7270b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7289371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7299371c9d4SSatish Balay v++; 7300b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7310b8dc8d2SHong Zhang /* non-diagonal block */ 7320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7330b8dc8d2SHong Zhang } 7340b8dc8d2SHong Zhang } 7350b8dc8d2SHong Zhang } 7369566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7370b8dc8d2SHong Zhang } 7380b8dc8d2SHong Zhang /* Bmat */ 7399371c9d4SSatish Balay v = bmat->a; 7409371c9d4SSatish Balay jj = bmat->j; 7410b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7420b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7430b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7440b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7459371c9d4SSatish Balay gcol = bs * garray[*jj]; 7469371c9d4SSatish Balay jj++; 7470b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7480b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7499371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7509371c9d4SSatish Balay v++; 7510b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7520b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7530b8dc8d2SHong Zhang } 7540b8dc8d2SHong Zhang } 7550b8dc8d2SHong Zhang } 7569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7570b8dc8d2SHong Zhang } 758e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7590b8dc8d2SHong Zhang *norm = 0.0; 760d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 761e91c04dfSPierre Jolivet if (rsum[col] > *norm) *norm = rsum[col]; 7620b8dc8d2SHong Zhang } 763e91c04dfSPierre Jolivet PetscCall(PetscFree(rsum)); 764f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 765a30f8f8cSSatish Balay } 7663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay 76966976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 770d71ae5a4SJacob Faibussowitsch { 771a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7721302d50aSBarry Smith PetscInt nstash, reallocs; 773a30f8f8cSSatish Balay 774a30f8f8cSSatish Balay PetscFunctionBegin; 7753ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 776a30f8f8cSSatish Balay 7779566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7789566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7799566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7809566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7819566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7829566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay 78666976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 787d71ae5a4SJacob Faibussowitsch { 788a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 789a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 79013f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 791e44c0bd4SBarry Smith PetscInt *row, *col; 792c0edf612SJunchao Zhang PetscBool all_assembled; 79313f74950SBarry Smith PetscMPIInt n; 794ace3abfcSBarry Smith PetscBool r1, r2, r3; 795a30f8f8cSSatish Balay MatScalar *val; 796a30f8f8cSSatish Balay 79791c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 798a30f8f8cSSatish Balay PetscFunctionBegin; 7994cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 800a30f8f8cSSatish Balay while (1) { 8019566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 802a30f8f8cSSatish Balay if (!flg) break; 803a30f8f8cSSatish Balay 804a30f8f8cSSatish Balay for (i = 0; i < n;) { 805a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 80626fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 80726fbe8dcSKarl Rupp if (row[j] != rstart) break; 80826fbe8dcSKarl Rupp } 809a30f8f8cSSatish Balay if (j < n) ncols = j - i; 810a30f8f8cSSatish Balay else ncols = n - i; 811a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8129566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 813a30f8f8cSSatish Balay i = j; 814a30f8f8cSSatish Balay } 815a30f8f8cSSatish Balay } 8169566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 817a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8185e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 819a30f8f8cSSatish Balay restore the original flags */ 820a30f8f8cSSatish Balay r1 = baij->roworiented; 821a30f8f8cSSatish Balay r2 = a->roworiented; 82291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 82326fbe8dcSKarl Rupp 824a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 825a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 82626fbe8dcSKarl Rupp 827b638e6b4SJunchao Zhang ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworiented */ 828a30f8f8cSSatish Balay while (1) { 8299566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 830a30f8f8cSSatish Balay if (!flg) break; 831a30f8f8cSSatish Balay 832a30f8f8cSSatish Balay for (i = 0; i < n;) { 833a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 83426fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 83526fbe8dcSKarl Rupp if (row[j] != rstart) break; 83626fbe8dcSKarl Rupp } 837a30f8f8cSSatish Balay if (j < n) ncols = j - i; 838a30f8f8cSSatish Balay else ncols = n - i; 8399566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 840a30f8f8cSSatish Balay i = j; 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay } 8439566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 84426fbe8dcSKarl Rupp 845a30f8f8cSSatish Balay baij->roworiented = r1; 846a30f8f8cSSatish Balay a->roworiented = r2; 84726fbe8dcSKarl Rupp 848b638e6b4SJunchao Zhang ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 849a30f8f8cSSatish Balay } 850a30f8f8cSSatish Balay 8519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 853a30f8f8cSSatish Balay 854b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 8556aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 856a30f8f8cSSatish Balay /* 857a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 858b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 859a30f8f8cSSatish Balay */ 860a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8615440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 862c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 863a30f8f8cSSatish Balay } 864a30f8f8cSSatish Balay 865ac530a7eSPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ 8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 868a30f8f8cSSatish Balay 8699566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 87026fbe8dcSKarl Rupp 871f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8724f9cfa9eSBarry Smith 8734f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 874f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 875e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 876462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 877e56f5c9eSBarry Smith } 8783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 879a30f8f8cSSatish Balay } 880a30f8f8cSSatish Balay 881dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8829804daf3SBarry Smith #include <petscdraw.h> 883d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 884d71ae5a4SJacob Faibussowitsch { 885a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 886d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8877da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 8889f196a02SMartin Diehl PetscBool isascii, isdraw; 889b0a32e0cSBarry Smith PetscViewer sviewer; 890f3ef73ceSBarry Smith PetscViewerFormat format; 891a30f8f8cSSatish Balay 892a30f8f8cSSatish Balay PetscFunctionBegin; 8939f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 8949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 8959f196a02SMartin Diehl if (isascii) { 8969566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 897456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 898a30f8f8cSSatish Balay MatInfo info; 8999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9009566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9029371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 903835f2295SStefano Zampini mat->rmap->bs, info.memory)); 9049566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9089566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9119566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 913fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 916c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 918a30f8f8cSSatish Balay } 919a30f8f8cSSatish Balay } 920a30f8f8cSSatish Balay 921a30f8f8cSSatish Balay if (isdraw) { 922b0a32e0cSBarry Smith PetscDraw draw; 923ace3abfcSBarry Smith PetscBool isnull; 9249566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9259566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9263ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 927a30f8f8cSSatish Balay } 928a30f8f8cSSatish Balay 9297da1fb6eSBarry Smith { 930a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 931a30f8f8cSSatish Balay Mat A; 93265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 93365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 934d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 935a30f8f8cSSatish Balay MatScalar *a; 9363e219373SBarry Smith const char *matname; 937a30f8f8cSSatish Balay 938f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9399566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 940dd400576SPatrick Sanan if (rank == 0) { 9419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 942a30f8f8cSSatish Balay } else { 9439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 944a30f8f8cSSatish Balay } 9459566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9469566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9479566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 948a30f8f8cSSatish Balay 949a30f8f8cSSatish Balay /* copy over the A part */ 95065d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9519371c9d4SSatish Balay ai = Aloc->i; 9529371c9d4SSatish Balay aj = Aloc->j; 9539371c9d4SSatish Balay a = Aloc->a; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 955a30f8f8cSSatish Balay 956a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 957e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 95826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 959a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 960e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 961a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9629566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 96326fbe8dcSKarl Rupp col++; 96426fbe8dcSKarl Rupp a += bs; 965a30f8f8cSSatish Balay } 966a30f8f8cSSatish Balay } 967a30f8f8cSSatish Balay } 968a30f8f8cSSatish Balay /* copy over the B part */ 96965d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9709371c9d4SSatish Balay ai = Bloc->i; 9719371c9d4SSatish Balay aj = Bloc->j; 9729371c9d4SSatish Balay a = Bloc->a; 973a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 974e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 976a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 977a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 978a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9799566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 98026fbe8dcSKarl Rupp col++; 98126fbe8dcSKarl Rupp a += bs; 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay } 984a30f8f8cSSatish Balay } 9859566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 988a30f8f8cSSatish Balay /* 989a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 990b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 991a30f8f8cSSatish Balay */ 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 99323a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 994dd400576SPatrick Sanan if (rank == 0) { 995f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname)); 996f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer)); 997a30f8f8cSSatish Balay } 9989566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 9999566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1000a30f8f8cSSatish Balay } 10013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1002a30f8f8cSSatish Balay } 1003a30f8f8cSSatish Balay 1004618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1005618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1006d1654148SHong Zhang 100766976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1008d71ae5a4SJacob Faibussowitsch { 10099f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 1010a30f8f8cSSatish Balay 1011a30f8f8cSSatish Balay PetscFunctionBegin; 10129f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 10139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1016ac530a7eSPierre Jolivet if (isascii || isdraw || issocket) PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 1017ac530a7eSPierre Jolivet else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1019a30f8f8cSSatish Balay } 1020a30f8f8cSSatish Balay 1021789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1022789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1023d71ae5a4SJacob Faibussowitsch { 1024547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1025eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10266de40e93SBarry Smith PetscScalar *from; 10276de40e93SBarry Smith const PetscScalar *x; 1028547795f9SHong Zhang 1029547795f9SHong Zhang PetscFunctionBegin; 1030547795f9SHong Zhang /* diagonal part */ 10319566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1032629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1033629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1034629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1035547795f9SHong Zhang 1036547795f9SHong Zhang /* subdiagonal part */ 10375f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10389566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1039547795f9SHong Zhang 1040547795f9SHong Zhang /* copy x into the vec slvec0 */ 10419566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10429566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1043547795f9SHong Zhang 10449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1047547795f9SHong Zhang 10489566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10499566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1050547795f9SHong Zhang /* supperdiagonal part */ 10519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1053547795f9SHong Zhang } 1054789afff4SPierre Jolivet #endif 1055547795f9SHong Zhang 105666976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1057d71ae5a4SJacob Faibussowitsch { 1058a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1059eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1060d9ca1df4SBarry Smith PetscScalar *from; 1061d9ca1df4SBarry Smith const PetscScalar *x; 1062a9d4b620SHong Zhang 1063a9d4b620SHong Zhang PetscFunctionBegin; 1064a9d4b620SHong Zhang /* diagonal part */ 10659566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1066629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1067629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1068629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1069a9d4b620SHong Zhang 1070a9d4b620SHong Zhang /* subdiagonal part */ 10719566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1072fc165ae2SBarry Smith 1073a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10749566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10759566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1076a9d4b620SHong Zhang 10779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10799566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1080fc165ae2SBarry Smith 10819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1083a9d4b620SHong Zhang /* supperdiagonal part */ 10849566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1086a9d4b620SHong Zhang } 1087a9d4b620SHong Zhang 108866976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 108966976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1090d71ae5a4SJacob Faibussowitsch { 1091eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1092eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1093629a200eSBarry Smith PetscScalar *from; 1094eb1ec7c1SStefano Zampini const PetscScalar *x; 1095eb1ec7c1SStefano Zampini 1096eb1ec7c1SStefano Zampini PetscFunctionBegin; 1097eb1ec7c1SStefano Zampini /* diagonal part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1099629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1100629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1101eb1ec7c1SStefano Zampini 1102eb1ec7c1SStefano Zampini /* subdiagonal part */ 11035f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11049566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1105eb1ec7c1SStefano Zampini 1106eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11079566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11109566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1111eb1ec7c1SStefano Zampini 11129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11139566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11149566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1115eb1ec7c1SStefano Zampini 1116eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11179566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1119eb1ec7c1SStefano Zampini } 112066976f2fSJacob Faibussowitsch #endif 1121eb1ec7c1SStefano Zampini 112266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1123d71ae5a4SJacob Faibussowitsch { 1124de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1125d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1126629a200eSBarry Smith PetscScalar *from; 1127d9ca1df4SBarry Smith const PetscScalar *x; 1128a9d4b620SHong Zhang 1129a9d4b620SHong Zhang PetscFunctionBegin; 1130a9d4b620SHong Zhang /* diagonal part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1132629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1133629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1134a9d4b620SHong Zhang 1135a9d4b620SHong Zhang /* subdiagonal part */ 11369566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1137a9d4b620SHong Zhang 1138a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11399566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11409566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1143a9d4b620SHong Zhang 11449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11469566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1147a9d4b620SHong Zhang 1148a9d4b620SHong Zhang /* supperdiagonal part */ 11499566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1151a9d4b620SHong Zhang } 1152a9d4b620SHong Zhang 1153a30f8f8cSSatish Balay /* 1154a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1155a30f8f8cSSatish Balay diagonal block 1156a30f8f8cSSatish Balay */ 115766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1158d71ae5a4SJacob Faibussowitsch { 1159a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1160a30f8f8cSSatish Balay 1161a30f8f8cSSatish Balay PetscFunctionBegin; 116208401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11639566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1165a30f8f8cSSatish Balay } 1166a30f8f8cSSatish Balay 116766976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1168d71ae5a4SJacob Faibussowitsch { 1169a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1170a30f8f8cSSatish Balay 1171a30f8f8cSSatish Balay PetscFunctionBegin; 11729566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11739566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1175a30f8f8cSSatish Balay } 1176a30f8f8cSSatish Balay 117766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1178d71ae5a4SJacob Faibussowitsch { 1179d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1180d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1181d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1182d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1183899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1184d0d4cfc2SHong Zhang 1185a30f8f8cSSatish Balay PetscFunctionBegin; 11865f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1187d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1188d0d4cfc2SHong Zhang 1189d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1190d0d4cfc2SHong Zhang /* 1191d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1192d0d4cfc2SHong Zhang */ 1193d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1194d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1195d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1196d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1197d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 119826fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1199d0d4cfc2SHong Zhang } 12009566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1201d0d4cfc2SHong Zhang } 1202d0d4cfc2SHong Zhang 12035f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1204d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1205d0d4cfc2SHong Zhang 12069371c9d4SSatish Balay pvA = &vworkA; 12079371c9d4SSatish Balay pcA = &cworkA; 12089371c9d4SSatish Balay pvB = &vworkB; 12099371c9d4SSatish Balay pcB = &cworkB; 12109371c9d4SSatish Balay if (!v) { 12119371c9d4SSatish Balay pvA = NULL; 12129371c9d4SSatish Balay pvB = NULL; 12139371c9d4SSatish Balay } 12149371c9d4SSatish Balay if (!idx) { 12159371c9d4SSatish Balay pcA = NULL; 12169371c9d4SSatish Balay if (!v) pcB = NULL; 12179371c9d4SSatish Balay } 12189566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12199566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1220d0d4cfc2SHong Zhang nztot = nzA + nzB; 1221d0d4cfc2SHong Zhang 1222d0d4cfc2SHong Zhang cmap = mat->garray; 1223d0d4cfc2SHong Zhang if (v || idx) { 1224d0d4cfc2SHong Zhang if (nztot) { 1225d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1226d0d4cfc2SHong Zhang PetscInt imark = -1; 1227d0d4cfc2SHong Zhang if (v) { 1228d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1229d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1230d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1231d0d4cfc2SHong Zhang else break; 1232d0d4cfc2SHong Zhang } 1233d0d4cfc2SHong Zhang imark = i; 1234d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1235d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1236d0d4cfc2SHong Zhang } 1237d0d4cfc2SHong Zhang if (idx) { 1238d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1239d0d4cfc2SHong Zhang if (imark > -1) { 1240ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1241d0d4cfc2SHong Zhang } else { 1242d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 124326fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1244d0d4cfc2SHong Zhang else break; 1245d0d4cfc2SHong Zhang } 1246d0d4cfc2SHong Zhang imark = i; 1247d0d4cfc2SHong Zhang } 1248d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1249d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1250d0d4cfc2SHong Zhang } 1251d0d4cfc2SHong Zhang } else { 1252f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1253f4259b30SLisandro Dalcin if (v) *v = NULL; 1254d0d4cfc2SHong Zhang } 1255d0d4cfc2SHong Zhang } 1256d0d4cfc2SHong Zhang *nz = nztot; 12579566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1260a30f8f8cSSatish Balay } 1261a30f8f8cSSatish Balay 126266976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1263d71ae5a4SJacob Faibussowitsch { 1264a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1265a30f8f8cSSatish Balay 1266a30f8f8cSSatish Balay PetscFunctionBegin; 12675f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1268a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 127266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1273d71ae5a4SJacob Faibussowitsch { 1274d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1275d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1276d0d4cfc2SHong Zhang 1277d0d4cfc2SHong Zhang PetscFunctionBegin; 1278d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1280d0d4cfc2SHong Zhang } 128166976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1282d71ae5a4SJacob Faibussowitsch { 1283d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1284d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1285d0d4cfc2SHong Zhang 1286d0d4cfc2SHong Zhang PetscFunctionBegin; 1287d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289d0d4cfc2SHong Zhang } 1290d0d4cfc2SHong Zhang 129166976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1292d71ae5a4SJacob Faibussowitsch { 12935f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12945f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 12952726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 12962726fb6dSPierre Jolivet 12979566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 12989566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 12995f80ce2aSJacob Faibussowitsch } 13003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13012726fb6dSPierre Jolivet } 13022726fb6dSPierre Jolivet 130366976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1304d71ae5a4SJacob Faibussowitsch { 130599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 130699cafbc1SBarry Smith 130799cafbc1SBarry Smith PetscFunctionBegin; 13089566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13099566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131199cafbc1SBarry Smith } 131299cafbc1SBarry Smith 131366976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1314d71ae5a4SJacob Faibussowitsch { 131599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 131699cafbc1SBarry Smith 131799cafbc1SBarry Smith PetscFunctionBegin; 13189566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13199566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132199cafbc1SBarry Smith } 132299cafbc1SBarry Smith 13237dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 132436032a97SHong Zhang Input: isrow - distributed(parallel), 132536032a97SHong Zhang iscol_local - locally owned (seq) 132636032a97SHong Zhang */ 132766976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1328d71ae5a4SJacob Faibussowitsch { 13298f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13308f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 133136032a97SHong Zhang 133236032a97SHong Zhang PetscFunctionBegin; 133366976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13349566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13359566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 133666976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13378f46ffcaSHong Zhang 13389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13408f46ffcaSHong Zhang 13419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13459566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13469566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13478f46ffcaSHong Zhang 13488f46ffcaSHong Zhang nmatch = 0; 13498f46ffcaSHong Zhang k = 0; 13508f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13518f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13528f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13539371c9d4SSatish Balay k = j; 13549371c9d4SSatish Balay nmatch++; 13558f46ffcaSHong Zhang break; 13568f46ffcaSHong Zhang } 13578f46ffcaSHong Zhang } 13588f46ffcaSHong Zhang } 13599566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13619566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13629566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13631098a8e8SHong Zhang if (nmatch < sz1) { 13641098a8e8SHong Zhang *flg = PETSC_FALSE; 13651098a8e8SHong Zhang } else { 13661098a8e8SHong Zhang *flg = PETSC_TRUE; 13671098a8e8SHong Zhang } 13683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13698f46ffcaSHong Zhang } 137036032a97SHong Zhang 137166976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1372d71ae5a4SJacob Faibussowitsch { 1373fdfbdca6SPierre Jolivet Mat C[2]; 1374fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1375fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1376fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 137736032a97SHong Zhang 137836032a97SHong Zhang PetscFunctionBegin; 13799566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1380fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 138136032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13835f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 138436032a97SHong Zhang } else { 13859566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13869566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1387fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 13888f46ffcaSHong Zhang } 1389fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1390fdfbdca6SPierre Jolivet if (!isequal) { 1391fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1392fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1393fdfbdca6SPierre Jolivet if (!isidentity) { 1394fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1395fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1396fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1397fdfbdca6SPierre Jolivet } else { 1398fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1399fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1400fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1401fdfbdca6SPierre Jolivet } 1402fdfbdca6SPierre Jolivet } 1403fdfbdca6SPierre Jolivet } 14047dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1405fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1406fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14078f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1408fdfbdca6SPierre Jolivet IS intersect; 1409fdfbdca6SPierre Jolivet PetscInt ni; 1410fdfbdca6SPierre Jolivet 1411fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1412fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1413fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1414fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1415fdfbdca6SPierre Jolivet } 1416fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1417fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1418fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1419fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1420fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1421fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1422fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1423fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1424fdfbdca6SPierre Jolivet } 1425fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1426fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1427fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1428fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1429fdfbdca6SPierre Jolivet } 14309566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14328f46ffcaSHong Zhang } 14333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14348f46ffcaSHong Zhang } 14358f46ffcaSHong Zhang 143666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1437d71ae5a4SJacob Faibussowitsch { 1438a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1439a30f8f8cSSatish Balay 1440a30f8f8cSSatish Balay PetscFunctionBegin; 14419566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14429566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1444a30f8f8cSSatish Balay } 1445a30f8f8cSSatish Balay 144666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1447d71ae5a4SJacob Faibussowitsch { 1448a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1449a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14503966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1451a30f8f8cSSatish Balay 1452a30f8f8cSSatish Balay PetscFunctionBegin; 1453d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 145426fbe8dcSKarl Rupp 14559566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 145626fbe8dcSKarl Rupp 14579371c9d4SSatish Balay isend[0] = info->nz_used; 14589371c9d4SSatish Balay isend[1] = info->nz_allocated; 14599371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14609371c9d4SSatish Balay isend[3] = info->memory; 14619371c9d4SSatish Balay isend[4] = info->mallocs; 146226fbe8dcSKarl Rupp 14639566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 146426fbe8dcSKarl Rupp 14659371c9d4SSatish Balay isend[0] += info->nz_used; 14669371c9d4SSatish Balay isend[1] += info->nz_allocated; 14679371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14689371c9d4SSatish Balay isend[3] += info->memory; 14699371c9d4SSatish Balay isend[4] += info->mallocs; 1470a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1471a30f8f8cSSatish Balay info->nz_used = isend[0]; 1472a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1473a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1474a30f8f8cSSatish Balay info->memory = isend[3]; 1475a30f8f8cSSatish Balay info->mallocs = isend[4]; 1476a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1477462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 147826fbe8dcSKarl Rupp 1479a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1480a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1481a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1482a30f8f8cSSatish Balay info->memory = irecv[3]; 1483a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1484a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1485462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 148626fbe8dcSKarl Rupp 1487a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1488a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1489a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1490a30f8f8cSSatish Balay info->memory = irecv[3]; 1491a30f8f8cSSatish Balay info->mallocs = irecv[4]; 149298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1493a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1494a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1495a30f8f8cSSatish Balay info->factor_mallocs = 0; 14963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1497a30f8f8cSSatish Balay } 1498a30f8f8cSSatish Balay 149966976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1500d71ae5a4SJacob Faibussowitsch { 1501a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1502d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1503a30f8f8cSSatish Balay 1504a30f8f8cSSatish Balay PetscFunctionBegin; 1505e98b92d7SKris Buschelman switch (op) { 1506512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1507e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 150828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1509a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1510e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 151143674050SBarry Smith MatCheckPreallocated(A, 1); 15129566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15139566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1514e98b92d7SKris Buschelman break; 1515e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 151643674050SBarry Smith MatCheckPreallocated(A, 1); 15174e0d8c25SBarry Smith a->roworiented = flg; 151826fbe8dcSKarl Rupp 15199566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15209566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1521e98b92d7SKris Buschelman break; 1522d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1523d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1524d71ae5a4SJacob Faibussowitsch break; 1525d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1526d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1527d71ae5a4SJacob Faibussowitsch break; 1528d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 15299725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 15300f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1531eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1532547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1533eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1534eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1535eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1536b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1537eb1ec7c1SStefano Zampini } 15380f2140c7SStefano Zampini #endif 1539eeffb40dSHong Zhang break; 1540ffa07934SHong Zhang case MAT_SPD: 1541d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 15429725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1543eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1544eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1545eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1546eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1547eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1548eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1549eb1ec7c1SStefano Zampini } 1550eb1ec7c1SStefano Zampini #endif 1551eeffb40dSHong Zhang break; 155277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15539725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1554eeffb40dSHong Zhang break; 1555d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1556d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1557d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1558d71ae5a4SJacob Faibussowitsch break; 1559d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1560d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1561d71ae5a4SJacob Faibussowitsch break; 1562d71ae5a4SJacob Faibussowitsch default: 1563888c827cSStefano Zampini break; 1564a30f8f8cSSatish Balay } 15653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1566a30f8f8cSSatish Balay } 1567a30f8f8cSSatish Balay 156866976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1569d71ae5a4SJacob Faibussowitsch { 1570a30f8f8cSSatish Balay PetscFunctionBegin; 15717fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1572cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15739566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1574cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15759566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1576fc4dec0aSBarry Smith } 15773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1578a30f8f8cSSatish Balay } 1579a30f8f8cSSatish Balay 158066976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1581d71ae5a4SJacob Faibussowitsch { 1582a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1583a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 15845e90f9d9SHong Zhang PetscInt nv, m, n; 1585ace3abfcSBarry Smith PetscBool flg; 1586a30f8f8cSSatish Balay 1587a30f8f8cSSatish Balay PetscFunctionBegin; 1588a30f8f8cSSatish Balay if (ll != rr) { 15899566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 15905f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1591a30f8f8cSSatish Balay } 15923ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1593b3bf805bSHong Zhang 15949566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 15955f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1596b3bf805bSHong Zhang 15979566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 15985f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 15995e90f9d9SHong Zhang 16009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16015e90f9d9SHong Zhang 16025e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1603dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16045e90f9d9SHong Zhang 16055e90f9d9SHong Zhang /* scale the diagonal part */ 1606dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1607a30f8f8cSSatish Balay 16085e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16099566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1610dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1612a30f8f8cSSatish Balay } 1613a30f8f8cSSatish Balay 161466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1615d71ae5a4SJacob Faibussowitsch { 1616f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1617a30f8f8cSSatish Balay 1618a30f8f8cSSatish Balay PetscFunctionBegin; 16199566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1621a30f8f8cSSatish Balay } 1622a30f8f8cSSatish Balay 16236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1624a30f8f8cSSatish Balay 162566976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1626d71ae5a4SJacob Faibussowitsch { 1627a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1628a30f8f8cSSatish Balay Mat a, b, c, d; 1629ace3abfcSBarry Smith PetscBool flg; 1630a30f8f8cSSatish Balay 1631a30f8f8cSSatish Balay PetscFunctionBegin; 16329371c9d4SSatish Balay a = matA->A; 16339371c9d4SSatish Balay b = matA->B; 16349371c9d4SSatish Balay c = matB->A; 16359371c9d4SSatish Balay d = matB->B; 1636a30f8f8cSSatish Balay 16379566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 163848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 16395440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1641a30f8f8cSSatish Balay } 1642a30f8f8cSSatish Balay 164366976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1644d71ae5a4SJacob Faibussowitsch { 16454c7a3774SStefano Zampini PetscBool isbaij; 16463c896bc6SHong Zhang 16473c896bc6SHong Zhang PetscFunctionBegin; 16489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16495f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16503c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16513c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16529566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16539566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16549566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16553c896bc6SHong Zhang } else { 16564c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16574c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16584c7a3774SStefano Zampini 16599566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16609566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16613c896bc6SHong Zhang } 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16643c896bc6SHong Zhang } 16653c896bc6SHong Zhang 166666976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1667d71ae5a4SJacob Faibussowitsch { 16684fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16694fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16704fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16714fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16724fe895cdSHong Zhang 16734fe895cdSHong Zhang PetscFunctionBegin; 16744fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16754fe895cdSHong Zhang PetscScalar alpha = a; 16764fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16774fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16789566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1679792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16804fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16814fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16829566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1683792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 16849566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1685ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16869566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 16879566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 16894fe895cdSHong Zhang } else { 16904de5dceeSHong Zhang Mat B; 16914de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 16925f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 16939566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16949566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 16969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 16979566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 16989566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 16999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 17009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 17019566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17029566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17039566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17049566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17059566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17069566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17079566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17089566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17099566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17109566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17114fe895cdSHong Zhang } 17123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17134fe895cdSHong Zhang } 17144fe895cdSHong Zhang 171566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1716d71ae5a4SJacob Faibussowitsch { 17171302d50aSBarry Smith PetscInt i; 1718afebec48SHong Zhang PetscBool flg; 1719a5e6ed63SBarry Smith 17206849ba73SBarry Smith PetscFunctionBegin; 17219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1722a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17239566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 172448a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17254dcd73b1SHong Zhang } 17263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1727a5e6ed63SBarry Smith } 1728a5e6ed63SBarry Smith 172966976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1730d71ae5a4SJacob Faibussowitsch { 17317d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17326f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17337d68702bSBarry Smith 17347d68702bSBarry Smith PetscFunctionBegin; 17356f33a894SBarry Smith if (!Y->preallocated) { 17369566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17376f33a894SBarry Smith } else if (!aij->nz) { 1738b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17399566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1740b83222d8SBarry Smith aij->nonew = nonew; 17417d68702bSBarry Smith } 17429566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17447d68702bSBarry Smith } 17457d68702bSBarry Smith 174666976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1747d71ae5a4SJacob Faibussowitsch { 17483b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17493b49f96aSBarry Smith 17503b49f96aSBarry Smith PetscFunctionBegin; 17515f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17529566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17533b49f96aSBarry Smith if (d) { 17543b49f96aSBarry Smith PetscInt rstart; 17559566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17563b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17573b49f96aSBarry Smith } 17583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17593b49f96aSBarry Smith } 17603b49f96aSBarry Smith 176166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1762d71ae5a4SJacob Faibussowitsch { 1763a5b7ff6bSBarry Smith PetscFunctionBegin; 1764a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1766a5b7ff6bSBarry Smith } 17673b49f96aSBarry Smith 176817ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 176917ea310bSPierre Jolivet { 177017ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 177117ea310bSPierre Jolivet 177217ea310bSPierre Jolivet PetscFunctionBegin; 177317ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 177417ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 177517ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 177617ea310bSPierre Jolivet } 177717ea310bSPierre Jolivet 17786cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer); 1779789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]); 1780789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 17816cff0a6bSPierre Jolivet 17823964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1783a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1784a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1785a9d4b620SHong Zhang MatMult_MPISBAIJ, 178697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1787431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1788431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1789f4259b30SLisandro Dalcin NULL, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin /* 10*/ NULL, 1793f4259b30SLisandro Dalcin NULL, 1794f4259b30SLisandro Dalcin NULL, 179541f059aeSBarry Smith MatSOR_MPISBAIJ, 1796a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 179797304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1798a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1799a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1800a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1801a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 180297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1803a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1804a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1805a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1806f4259b30SLisandro Dalcin /* 24*/ NULL, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 181126cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 1814a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1815f4259b30SLisandro Dalcin NULL, 1816d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin NULL, 1820f4259b30SLisandro Dalcin NULL, 1821d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18227dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1823d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1824a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18253c896bc6SHong Zhang MatCopy_MPISBAIJ, 1826f4259b30SLisandro Dalcin /* 44*/ NULL, 1827a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18287d68702bSBarry Smith MatShift_MPISBAIJ, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin /* 49*/ NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin /* 54*/ NULL, 1837f4259b30SLisandro Dalcin NULL, 1838a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1839f4259b30SLisandro Dalcin NULL, 1840a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18417dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin /* 64*/ NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin NULL, 18508bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPISBAIJ, 18518bb0f5c6SPierre Jolivet /* 69*/ NULL, 185228d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin NULL, 18605bba2384SShri Abhyankar MatLoad_MPISBAIJ, 18618bb0f5c6SPierre Jolivet /* 79*/ NULL, 18628bb0f5c6SPierre Jolivet NULL, 18638bb0f5c6SPierre Jolivet NULL, 18648bb0f5c6SPierre Jolivet NULL, 18658bb0f5c6SPierre Jolivet NULL, 1866f4259b30SLisandro Dalcin /* 84*/ NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin /* 89*/ NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin NULL, 18758bb0f5c6SPierre Jolivet MatConjugate_MPISBAIJ, 1876f4259b30SLisandro Dalcin /* 94*/ NULL, 1877f4259b30SLisandro Dalcin NULL, 187899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1879d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1880d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 18818bb0f5c6SPierre Jolivet /* 99*/ MatRestoreRowUpperTriangular_MPISBAIJ, 18828bb0f5c6SPierre Jolivet NULL, 18838bb0f5c6SPierre Jolivet NULL, 18848bb0f5c6SPierre Jolivet NULL, 18858bb0f5c6SPierre Jolivet NULL, 18868bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPISBAIJ, 18878bb0f5c6SPierre Jolivet NULL, 18888bb0f5c6SPierre Jolivet NULL, 18898bb0f5c6SPierre Jolivet NULL, 18908bb0f5c6SPierre Jolivet NULL, 1891f4259b30SLisandro Dalcin /*109*/ NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin NULL, 1894f4259b30SLisandro Dalcin NULL, 18958bb0f5c6SPierre Jolivet NULL, 1896f4259b30SLisandro Dalcin /*114*/ NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin /*119*/ NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin NULL, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin /*124*/ NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin NULL, 19098bb0f5c6SPierre Jolivet MatSetBlockSizes_Default, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin /*129*/ NULL, 1912f4259b30SLisandro Dalcin NULL, 19138bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1914f4259b30SLisandro Dalcin NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin /*134*/ NULL, 1917f4259b30SLisandro Dalcin NULL, 1918f4259b30SLisandro Dalcin NULL, 1919eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 19204cc2b5b5SPierre Jolivet NULL, 19218bb0f5c6SPierre Jolivet /*139*/ NULL, 192242ce410bSJunchao Zhang NULL, 192342ce410bSJunchao Zhang NULL, 192403db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 1925c2be7ffeSStefano Zampini NULL, 192603db1824SAlex Lindsay NULL}; 1927a30f8f8cSSatish Balay 192866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1929d71ae5a4SJacob Faibussowitsch { 1930476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1931535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19325d2a9ed1SStefano Zampini PetscMPIInt size; 1933a23d5eceSKris Buschelman 1934a23d5eceSKris Buschelman PetscFunctionBegin; 1935ad79cf63SBarry Smith if (B->hash_active) { 1936aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1937ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1938ad79cf63SBarry Smith } 1939ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 194058b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs)); 19419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19439566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19445f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19455f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1946899cda47SBarry Smith 1947d0f46423SBarry Smith mbs = B->rmap->n / bs; 1948d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19495f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1950a23d5eceSKris Buschelman 1951d0f46423SBarry Smith B->rmap->bs = bs; 1952a23d5eceSKris Buschelman b->bs2 = bs * bs; 1953a23d5eceSKris Buschelman b->mbs = mbs; 1954a23d5eceSKris Buschelman b->Mbs = Mbs; 1955de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1956de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1957a23d5eceSKris Buschelman 1958ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1959d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1960d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1961a23d5eceSKris Buschelman 1962d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1963d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1964a23d5eceSKris Buschelman 1965cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1966eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 1967cb7b82ddSBarry Smith #else 19689566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1969cb7b82ddSBarry Smith #endif 19709566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 19729566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 19739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 19749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 19759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 19769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 19779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 19789566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1979cb7b82ddSBarry Smith 19809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 1981c508b908SBarry Smith 1982c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 19839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19849566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 19859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 19869566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 1987c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 1988cb7b82ddSBarry Smith 1989c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 1990ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 19919566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 19929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 19939566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 1994c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 1995a23d5eceSKris Buschelman 19969566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 19979566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 199826fbe8dcSKarl Rupp 1999526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2000cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2001cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 20023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2003a23d5eceSKris Buschelman } 2004a23d5eceSKris Buschelman 200566976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2006d71ae5a4SJacob Faibussowitsch { 200702106b30SBarry Smith PetscInt m, rstart, cend; 2008f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2009f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2010f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2011bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20123bd0feecSPierre Jolivet PetscBool nooffprocentries; 2013dfb205c3SBarry Smith 2014dfb205c3SBarry Smith PetscFunctionBegin; 20155f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20169566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20199566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20209566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2021dfb205c3SBarry Smith m = B->rmap->n / bs; 2022dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2023dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2024dfb205c3SBarry Smith 20255f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20269566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2027dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2028dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20295f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20304cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2031dfb205c3SBarry Smith JJ = jj + ii[i]; 20320cd7f59aSBarry Smith bd = 0; 2033dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20340cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2035dfb205c3SBarry Smith JJ++; 20360cd7f59aSBarry Smith bd++; 2037dfb205c3SBarry Smith } 2038dfb205c3SBarry Smith d = 0; 2039dfb205c3SBarry Smith for (; j < nz; j++) { 2040dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2041dfb205c3SBarry Smith d++; 2042dfb205c3SBarry Smith } 2043dfb205c3SBarry Smith d_nnz[i] = d; 20440cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20450cd7f59aSBarry Smith nz = nz - bd; 20460cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2047dfb205c3SBarry Smith } 20489566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20499566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20509566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2051dfb205c3SBarry Smith 2052dfb205c3SBarry Smith values = (PetscScalar *)V; 205348a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2054dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2055dfb205c3SBarry Smith PetscInt row = i + rstart; 2056dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2057dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2058bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2059dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20609566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2061bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2062bb80cfbbSStefano Zampini PetscInt j; 20630cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20640cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20659566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20660cd7f59aSBarry Smith } 20670cd7f59aSBarry Smith } 2068dfb205c3SBarry Smith } 2069dfb205c3SBarry Smith 20709566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20713bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20723bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 20739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 20749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 20753bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20763bd0feecSPierre Jolivet 20779566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2079dfb205c3SBarry Smith } 2080dfb205c3SBarry Smith 20810bad9183SKris Buschelman /*MC 2082fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2083828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2084828413b8SBarry Smith the matrix is stored. 2085828413b8SBarry Smith 2086828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 208711a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 20880bad9183SKris Buschelman 20892ef1f0ffSBarry Smith Options Database Key: 209011a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 20910bad9183SKris Buschelman 20922ef1f0ffSBarry Smith Level: beginner 20932ef1f0ffSBarry Smith 209411a5261eSBarry Smith Note: 2095476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2096476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2097476417e5SBarry Smith 20981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20990bad9183SKris Buschelman M*/ 21000bad9183SKris Buschelman 2101d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2102d71ae5a4SJacob Faibussowitsch { 2103b5df2d14SHong Zhang Mat_MPISBAIJ *b; 210494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2105b5df2d14SHong Zhang 2106b5df2d14SHong Zhang PetscFunctionBegin; 21074dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2108b0a32e0cSBarry Smith B->data = (void *)b; 2109aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2110b5df2d14SHong Zhang 2111b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2112b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2113b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2114b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 211526fbe8dcSKarl Rupp 21169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2118b5df2d14SHong Zhang 2119b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2121b5df2d14SHong Zhang 2122b5df2d14SHong Zhang /* build cache for off array entries formed */ 21239566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 212426fbe8dcSKarl Rupp 2125b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21260298fd71SBarry Smith b->colmap = NULL; 21270298fd71SBarry Smith b->garray = NULL; 2128b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2129b5df2d14SHong Zhang 2130b5df2d14SHong Zhang /* stuff used in block assembly */ 2131f4259b30SLisandro Dalcin b->barray = NULL; 2132b5df2d14SHong Zhang 2133b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2134f4259b30SLisandro Dalcin b->lvec = NULL; 2135f4259b30SLisandro Dalcin b->Mvctx = NULL; 2136f4259b30SLisandro Dalcin b->slvec0 = NULL; 2137f4259b30SLisandro Dalcin b->slvec0b = NULL; 2138f4259b30SLisandro Dalcin b->slvec1 = NULL; 2139f4259b30SLisandro Dalcin b->slvec1a = NULL; 2140f4259b30SLisandro Dalcin b->slvec1b = NULL; 2141f4259b30SLisandro Dalcin b->sMvctx = NULL; 2142b5df2d14SHong Zhang 2143b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2144f4259b30SLisandro Dalcin b->rowindices = NULL; 2145f4259b30SLisandro Dalcin b->rowvalues = NULL; 2146b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2147b5df2d14SHong Zhang 2148b5df2d14SHong Zhang /* hash table stuff */ 2149f4259b30SLisandro Dalcin b->ht = NULL; 2150f4259b30SLisandro Dalcin b->hd = NULL; 2151b5df2d14SHong Zhang b->ht_size = 0; 2152b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2153b5df2d14SHong Zhang b->ht_fact = 0; 2154b5df2d14SHong Zhang b->ht_total_ct = 0; 2155b5df2d14SHong Zhang b->ht_insert_ct = 0; 2156b5df2d14SHong Zhang 21577dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21587a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21597a868f3eSHong Zhang 2160f4259b30SLisandro Dalcin b->in_loc = NULL; 2161f4259b30SLisandro Dalcin b->v_loc = NULL; 216259ffdab8SBarry Smith b->n_loc = 0; 216394ae4db5SBarry Smith 21649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21686214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 21706214f412SHong Zhang #endif 2171d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 21729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2173d24d4204SJose E. Roman #endif 21749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 21759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2176aa5a9175SDahai Guo 2177b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2178b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2179b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2180b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2181eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2182b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2183eb1ec7c1SStefano Zampini #else 2184b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2185eb1ec7c1SStefano Zampini #endif 218613647f61SHong Zhang 21879566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2188d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 21899566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 219094ae4db5SBarry Smith if (flg) { 219194ae4db5SBarry Smith PetscReal fact = 1.39; 21929566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 21939566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 219494ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21959566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 21969566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 219794ae4db5SBarry Smith } 2198d0609cedSBarry Smith PetscOptionsEnd(); 21993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2200b5df2d14SHong Zhang } 2201b5df2d14SHong Zhang 22022920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2203209238afSKris Buschelman /*MC 2204002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2205209238afSKris Buschelman 220611a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 220711a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2208209238afSKris Buschelman 220911a5261eSBarry Smith Options Database Key: 2210c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2211209238afSKris Buschelman 2212209238afSKris Buschelman Level: beginner 2213209238afSKris Buschelman 22141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2215209238afSKris Buschelman M*/ 2216209238afSKris Buschelman 22175d83a8b1SBarry Smith /*@ 2218b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2219b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2220b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2221b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2222b5df2d14SHong Zhang 2223c3339decSBarry Smith Collective 2224b5df2d14SHong Zhang 2225b5df2d14SHong Zhang Input Parameters: 22261c4f3114SJed Brown + B - the matrix 2227bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2228bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2229b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2230b5df2d14SHong Zhang submatrix (same for all local rows) 2231b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22326d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22332ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 223495742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2235b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2236b5df2d14SHong Zhang submatrix (same for all local rows). 2237b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2238c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22392ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2240b5df2d14SHong Zhang 2241b5df2d14SHong Zhang Options Database Keys: 2242a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2243b5df2d14SHong Zhang block calculations (much slower) 2244a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2245b5df2d14SHong Zhang 22462ef1f0ffSBarry Smith Level: intermediate 22472ef1f0ffSBarry Smith 2248b5df2d14SHong Zhang Notes: 2249b5df2d14SHong Zhang 225011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2251b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2252b5df2d14SHong Zhang 225349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 225449a6f317SBarry Smith 2255b5df2d14SHong Zhang Storage Information: 2256b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2257b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2258b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2259b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2260b5df2d14SHong Zhang 2261b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22622ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22632ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2264b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22652ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2266b5df2d14SHong Zhang 226711a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2268aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 22692ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2270aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2271aa95bbe8SBarry Smith 2272b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2273b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2274b5df2d14SHong Zhang 2275b5df2d14SHong Zhang .vb 2276b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2277a4b1a0f6SJed Brown -------------------------- 2278c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2279c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2280c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2281a4b1a0f6SJed Brown -------------------------- 2282b5df2d14SHong Zhang .ve 2283b5df2d14SHong Zhang 2284b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2285b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22866d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 228711a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2288b5df2d14SHong Zhang 22892ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 22906d10fdaeSSatish Balay plus the diagonal part of the d matrix, 22912ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2292c2fc9fa9SBarry Smith 2293b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 22942ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2295b5df2d14SHong Zhang 22961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2297b5df2d14SHong Zhang @*/ 2298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2299d71ae5a4SJacob Faibussowitsch { 2300b5df2d14SHong Zhang PetscFunctionBegin; 23016ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23026ba663aaSJed Brown PetscValidType(B, 1); 23036ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2304cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 23053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2306b5df2d14SHong Zhang } 2307b5df2d14SHong Zhang 23082920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 23095d83a8b1SBarry Smith /*@ 231011a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2311a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2312a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 231320f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2314a30f8f8cSSatish Balay 2315d083f849SBarry Smith Collective 2316a30f8f8cSSatish Balay 2317a30f8f8cSSatish Balay Input Parameters: 2318a30f8f8cSSatish Balay + comm - MPI communicator 231911a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 232020f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 232120f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2322a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2323a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 232420f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2325a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2326a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 232720f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 232820f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2329a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2330a30f8f8cSSatish Balay submatrix (same for all local rows) 2331a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23326d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23332ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 233495742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 233595742e49SBarry Smith set its value even if it is zero. 2336a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2337a30f8f8cSSatish Balay submatrix (same for all local rows). 2338a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2339a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23402ef1f0ffSBarry Smith each block row) or `NULL`. 2341a30f8f8cSSatish Balay 2342a30f8f8cSSatish Balay Output Parameter: 2343a30f8f8cSSatish Balay . A - the matrix 2344a30f8f8cSSatish Balay 2345a30f8f8cSSatish Balay Options Database Keys: 2346a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2347a30f8f8cSSatish Balay block calculations (much slower) 2348a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2349a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2350a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2351a30f8f8cSSatish Balay 23522ef1f0ffSBarry Smith Level: intermediate 23532ef1f0ffSBarry Smith 23542ef1f0ffSBarry Smith Notes: 235577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2356f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 235711a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2358175b88e8SBarry Smith 2359d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23606d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2361d1be2dadSMatthew Knepley 2362a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2363a30f8f8cSSatish Balay (possibly both). 2364a30f8f8cSSatish Balay 236511a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2366a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2367a30f8f8cSSatish Balay 2368727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by 2369727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 2370727bdf9bSBarry Smith 237149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 237249a6f317SBarry Smith 2373a30f8f8cSSatish Balay Storage Information: 2374a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2375a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2376a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2377a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2378a30f8f8cSSatish Balay 2379a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 23802ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 23812ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2382a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 23832ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2384a30f8f8cSSatish Balay 2385a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2386a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2387a30f8f8cSSatish Balay 2388a30f8f8cSSatish Balay .vb 2389a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2390a4b1a0f6SJed Brown -------------------------- 2391c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2392c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2393c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2394a4b1a0f6SJed Brown -------------------------- 2395a30f8f8cSSatish Balay .ve 2396a30f8f8cSSatish Balay 2397a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2398a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23996d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24002ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2401a30f8f8cSSatish Balay 24022ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 24036d10fdaeSSatish Balay plus the diagonal part of the d matrix, 24042ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2405a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 24062ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2407a30f8f8cSSatish Balay 2408727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, 2409727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 2410a30f8f8cSSatish Balay @*/ 2411d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2412d71ae5a4SJacob Faibussowitsch { 24131302d50aSBarry Smith PetscMPIInt size; 2414a30f8f8cSSatish Balay 2415a30f8f8cSSatish Balay PetscFunctionBegin; 24169566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2419273d9f13SBarry Smith if (size > 1) { 24209566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24219566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2422273d9f13SBarry Smith } else { 24239566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24249566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2425273d9f13SBarry Smith } 24263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2427a30f8f8cSSatish Balay } 2428a30f8f8cSSatish Balay 2429d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2430d71ae5a4SJacob Faibussowitsch { 2431a30f8f8cSSatish Balay Mat mat; 2432a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2433d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2434387bc808SHong Zhang PetscScalar *array; 2435a30f8f8cSSatish Balay 2436a30f8f8cSSatish Balay PetscFunctionBegin; 2437f4259b30SLisandro Dalcin *newmat = NULL; 243826fbe8dcSKarl Rupp 24399566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24419566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24429566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24439566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2444e1b6402fSHong Zhang 2445420957c1SBarry Smith if (matin->hash_active) { 2446420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2447420957c1SBarry Smith } else { 2448d5f3da31SBarry Smith mat->factortype = matin->factortype; 2449273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 245082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24517fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24527fff6886SHong Zhang 2453b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2454a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2455a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2456a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2457a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2458a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2459a30f8f8cSSatish Balay 2460a30f8f8cSSatish Balay a->size = oldmat->size; 2461a30f8f8cSSatish Balay a->rank = oldmat->rank; 2462a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2463a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2464f4259b30SLisandro Dalcin a->rowindices = NULL; 2465f4259b30SLisandro Dalcin a->rowvalues = NULL; 2466a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2467f4259b30SLisandro Dalcin a->barray = NULL; 2468899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2469899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2470899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2471899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2472a30f8f8cSSatish Balay 2473a30f8f8cSSatish Balay /* hash table stuff */ 2474f4259b30SLisandro Dalcin a->ht = NULL; 2475f4259b30SLisandro Dalcin a->hd = NULL; 2476a30f8f8cSSatish Balay a->ht_size = 0; 2477a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2478a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2479a30f8f8cSSatish Balay a->ht_total_ct = 0; 2480a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2481a30f8f8cSSatish Balay 24829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2483a30f8f8cSSatish Balay if (oldmat->colmap) { 2484a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2485eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2486a30f8f8cSSatish Balay #else 24879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 24889566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2489a30f8f8cSSatish Balay #endif 2490f4259b30SLisandro Dalcin } else a->colmap = NULL; 2491387bc808SHong Zhang 2492f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 24939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 24949566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2495f4259b30SLisandro Dalcin } else a->garray = NULL; 2496a30f8f8cSSatish Balay 24979566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 24989566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 24999566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 250082327fa8SHong Zhang 25019566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 25029566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2503387bc808SHong Zhang 25049566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 25059566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 25069566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 25079566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 25089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 25099566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 25109566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 25119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2512387bc808SHong Zhang 2513387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2515387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 251682327fa8SHong Zhang 25179566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25189566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2519420957c1SBarry Smith } 25209566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2521a30f8f8cSSatish Balay *newmat = mat; 25223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2523a30f8f8cSSatish Balay } 2524a30f8f8cSSatish Balay 2525618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2526618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2527618cc2edSLisandro Dalcin 25286cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2529d71ae5a4SJacob Faibussowitsch { 25307f489da9SVaclav Hapla PetscBool isbinary; 253195936485SShri Abhyankar 253295936485SShri Abhyankar PetscFunctionBegin; 25339566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25345f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25359566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 253795936485SShri Abhyankar } 253895936485SShri Abhyankar 2539789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2540d71ae5a4SJacob Faibussowitsch { 254124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2542f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data; 2543ca54ac64SHong Zhang PetscReal atmp; 254487828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25451302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25461302d50aSBarry Smith PetscMPIInt rank, size; 25476497c311SBarry Smith PetscInt *rowners_bs, count, source; 254887828ca2SBarry Smith PetscScalar *va; 25498a1c53f2SBarry Smith MatScalar *ba; 2550f4c0e9e4SHong Zhang MPI_Status stat; 255124d5174aSHong Zhang 255224d5174aSHong Zhang PetscFunctionBegin; 25535f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25549566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25559566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2556f4c0e9e4SHong Zhang 25579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2559f4c0e9e4SHong Zhang 2560d0f46423SBarry Smith bs = A->rmap->bs; 2561f4c0e9e4SHong Zhang mbs = a->mbs; 2562f4c0e9e4SHong Zhang Mbs = a->Mbs; 2563f4c0e9e4SHong Zhang ba = b->a; 2564f4c0e9e4SHong Zhang bi = b->i; 2565f4c0e9e4SHong Zhang bj = b->j; 2566f4c0e9e4SHong Zhang 2567f4c0e9e4SHong Zhang /* find ownerships */ 2568d0f46423SBarry Smith rowners_bs = A->rmap->range; 2569f4c0e9e4SHong Zhang 2570f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25719566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2572f4c0e9e4SHong Zhang 2573f4c0e9e4SHong Zhang /* row_max for B */ 2574b8475685SHong Zhang if (rank != size - 1) { 2575f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 25769371c9d4SSatish Balay ncols = bi[1] - bi[0]; 25779371c9d4SSatish Balay bi++; 2578f4c0e9e4SHong Zhang brow = bs * i; 2579f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2580f4c0e9e4SHong Zhang bcol = bs * (*bj); 2581f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2582ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 258304d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2584f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 25859371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 25869371c9d4SSatish Balay ba++; 2587ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2588ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2589f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2590f4c0e9e4SHong Zhang } 2591f4c0e9e4SHong Zhang } 2592f4c0e9e4SHong Zhang bj++; 2593f4c0e9e4SHong Zhang } 2594f4c0e9e4SHong Zhang } 2595f4c0e9e4SHong Zhang 2596f4c0e9e4SHong Zhang /* send values to its owners */ 25976497c311SBarry Smith for (PetscMPIInt dest = rank + 1; dest < size; dest++) { 2598f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2599ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 26006497c311SBarry Smith PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2601ca54ac64SHong Zhang } 2602f4c0e9e4SHong Zhang } 2603f4c0e9e4SHong Zhang 2604f4c0e9e4SHong Zhang /* receive values */ 2605ca54ac64SHong Zhang if (rank) { 2606f4c0e9e4SHong Zhang rvalues = work; 2607ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2608f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 26096497c311SBarry Smith PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2610f4c0e9e4SHong Zhang /* process values */ 2611f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2612ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2613f4c0e9e4SHong Zhang } 2614f4c0e9e4SHong Zhang } 2615ca54ac64SHong Zhang } 2616f4c0e9e4SHong Zhang 26179566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26189566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 262024d5174aSHong Zhang } 26212798e883SHong Zhang 2622789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2623d71ae5a4SJacob Faibussowitsch { 26242798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2625d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26263649974fSBarry Smith PetscScalar *x, *ptr, *from; 2627ffe4fb16SHong Zhang Vec bb1; 26283649974fSBarry Smith const PetscScalar *b; 2629ffe4fb16SHong Zhang 2630ffe4fb16SHong Zhang PetscFunctionBegin; 26315f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26325f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2633ffe4fb16SHong Zhang 2634a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26359566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2637a2b30743SBarry Smith } 2638a2b30743SBarry Smith 2639ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2640ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26419566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2642ffe4fb16SHong Zhang its--; 2643ffe4fb16SHong Zhang } 2644ffe4fb16SHong Zhang 26459566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2646ffe4fb16SHong Zhang while (its--) { 2647ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26489566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2649ffe4fb16SHong Zhang 2650ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26519566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26529566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26539566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2655ffe4fb16SHong Zhang 26569566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2657ffe4fb16SHong Zhang 2658ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26599566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26619566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2663ffe4fb16SHong Zhang 2664ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2665629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2666629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2667ffe4fb16SHong Zhang 26689566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26719566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2672ffe4fb16SHong Zhang 2673ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26749566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2675ffe4fb16SHong Zhang 2676ffe4fb16SHong Zhang /* local diagonal sweep */ 26779566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2678ffe4fb16SHong Zhang } 26799566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2680fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2682fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26839566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2684fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2685fa22f6d0SBarry Smith Vec xx1; 2686ace3abfcSBarry Smith PetscBool hasop; 268720f1ed55SBarry Smith const PetscScalar *diag; 2688887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 268920f1ed55SBarry Smith PetscInt i, n; 2690fa22f6d0SBarry Smith 2691fa22f6d0SBarry Smith if (!mat->xx1) { 26929566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 26939566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2694fa22f6d0SBarry Smith } 2695fa22f6d0SBarry Smith xx1 = mat->xx1; 2696fa22f6d0SBarry Smith bb1 = mat->bb1; 2697fa22f6d0SBarry Smith 26989566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2699fa22f6d0SBarry Smith 2700fa22f6d0SBarry Smith if (!mat->diag) { 2701effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27029566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 27039566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2704fa22f6d0SBarry Smith } 27059566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2706fa22f6d0SBarry Smith 2707fa22f6d0SBarry Smith if (hasop) { 27089566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 27099566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 271020f1ed55SBarry Smith } else { 271120f1ed55SBarry Smith /* 271220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27139566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27149566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 271520f1ed55SBarry Smith */ 27169566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27189566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27199566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27209566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2721887ee2caSBarry Smith if (omega == 1.0) { 272226fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27239566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2724887ee2caSBarry Smith } else { 272526fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27269566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2727887ee2caSBarry Smith } 27289566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27319566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 273220f1ed55SBarry Smith } 2733fa22f6d0SBarry Smith 2734fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2735629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2736629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27379566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27389566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27399566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27409566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27419566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27439566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27449566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27459566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2746fa22f6d0SBarry Smith 2747fa22f6d0SBarry Smith /* local sweep */ 27489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27499566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2750f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2752ffe4fb16SHong Zhang } 2753ffe4fb16SHong Zhang 2754dfb205c3SBarry Smith /*@ 2755d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2756dfb205c3SBarry Smith 2757d083f849SBarry Smith Collective 2758dfb205c3SBarry Smith 2759dfb205c3SBarry Smith Input Parameters: 2760dfb205c3SBarry Smith + comm - MPI communicator 2761dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 276211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2763dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2764d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 27652ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27662ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27672ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2768483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2769dfb205c3SBarry Smith . j - column indices 2770dfb205c3SBarry Smith - a - matrix values 2771dfb205c3SBarry Smith 2772dfb205c3SBarry Smith Output Parameter: 2773dfb205c3SBarry Smith . mat - the matrix 2774dfb205c3SBarry Smith 2775dfb205c3SBarry Smith Level: intermediate 2776dfb205c3SBarry Smith 2777dfb205c3SBarry Smith Notes: 27782ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 27792ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 27802ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2781dfb205c3SBarry Smith 27822ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2783dfb205c3SBarry Smith 27841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2785d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2786dfb205c3SBarry Smith @*/ 2787d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2788d71ae5a4SJacob Faibussowitsch { 2789dfb205c3SBarry Smith PetscFunctionBegin; 27905f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 27915f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 27929566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 27939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 27949566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 27959566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 27963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2797dfb205c3SBarry Smith } 2798dfb205c3SBarry Smith 27995d83a8b1SBarry Smith /*@ 280011a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2801dfb205c3SBarry Smith 2802d083f849SBarry Smith Collective 2803dfb205c3SBarry Smith 2804dfb205c3SBarry Smith Input Parameters: 28051c4f3114SJed Brown + B - the matrix 2806dfb205c3SBarry Smith . bs - the block size 2807d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2808d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2809d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2810dfb205c3SBarry Smith 2811664954b6SBarry Smith Level: advanced 2812664954b6SBarry Smith 2813664954b6SBarry Smith Notes: 2814d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2815d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2816d8a51d2aSBarry Smith called this routine. 2817d8a51d2aSBarry Smith 28180cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28190cd7f59aSBarry Smith and usually the numerical values as well 28200cd7f59aSBarry Smith 2821d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2822dfb205c3SBarry Smith 2823d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2824d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2825dfb205c3SBarry Smith @*/ 2826d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2827d71ae5a4SJacob Faibussowitsch { 2828dfb205c3SBarry Smith PetscFunctionBegin; 2829cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2831dfb205c3SBarry Smith } 2832dfb205c3SBarry Smith 2833d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2834d71ae5a4SJacob Faibussowitsch { 283510c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 283610c56fdeSHong Zhang PetscInt *indx; 283710c56fdeSHong Zhang PetscScalar *values; 2838dfb205c3SBarry Smith 28394dcd73b1SHong Zhang PetscFunctionBegin; 28409566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 284110c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 284210c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2843de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 284410c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2845de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28464dcd73b1SHong Zhang 28479566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28489371c9d4SSatish Balay mbs = m / bs; 28499371c9d4SSatish Balay Nbs = N / cbs; 285048a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2851da91a574SPierre Jolivet nbs = n / cbs; 28524dcd73b1SHong Zhang 28539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2854d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2855de25e9cbSPierre Jolivet 28569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 2857*badd099fSHan Liu PetscCallMPI(MPI_Comm_size(comm, &size)); 2858de25e9cbSPierre Jolivet if (rank == size - 1) { 2859de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28605f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2861de25e9cbSPierre Jolivet } 2862de25e9cbSPierre Jolivet 2863d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28649566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 286510c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28669566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28674dcd73b1SHong Zhang nnz = nnz / bs; 28684dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 28699566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 28709566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28714dcd73b1SHong Zhang } 28729566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28739566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28744dcd73b1SHong Zhang 28759566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 28769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 28779566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 28789566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 28799566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 28809566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2881d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 28824dcd73b1SHong Zhang } 28834dcd73b1SHong Zhang 288410c56fdeSHong Zhang /* numeric phase */ 28859566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28869566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 28874dcd73b1SHong Zhang 28889566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 28894dcd73b1SHong Zhang for (i = 0; i < m; i++) { 28909566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28914dcd73b1SHong Zhang Ii = i + rstart; 28929566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 28939566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28944dcd73b1SHong Zhang } 28959566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28969566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 28979566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 28983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28994dcd73b1SHong Zhang } 2900