1*be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 10277431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103a30f8f8cSSatish Balay if (nrow >= rmax) { \ 104a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1051302d50aSBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 106a30f8f8cSSatish Balay MatScalar *new_a; \ 107a30f8f8cSSatish Balay \ 10877431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 109a30f8f8cSSatish Balay \ 110a30f8f8cSSatish Balay /* malloc new storage space */ \ 1111302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 11282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1131302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 114a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 115a30f8f8cSSatish Balay \ 116a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 117a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 118a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 1191302d50aSBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 120a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1211302d50aSBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 122a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12387828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 125a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 126a30f8f8cSSatish Balay /* free up old matrix storage */ \ 127a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 128a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 130a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 131a30f8f8cSSatish Balay } \ 132a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 133a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 134a30f8f8cSSatish Balay \ 135a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 136a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 13752e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \ 1386c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 139a30f8f8cSSatish Balay a->reallocs++; \ 1406c6c5352SBarry Smith a->nz++; \ 141a30f8f8cSSatish Balay } \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay a_noinsert:; \ 152a30f8f8cSSatish Balay ailen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 155a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 156a30f8f8cSSatish Balay { \ 157a30f8f8cSSatish Balay brow = row/bs; \ 158a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 159a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 160a30f8f8cSSatish Balay bcol = col/bs; \ 161a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 162a30f8f8cSSatish Balay low = 0; high = nrow; \ 163a30f8f8cSSatish Balay while (high-low > 3) { \ 164a30f8f8cSSatish Balay t = (low+high)/2; \ 165a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 166a30f8f8cSSatish Balay else low = t; \ 167a30f8f8cSSatish Balay } \ 168a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 169a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 170a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 171a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 172a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 173a30f8f8cSSatish Balay else *bap = value; \ 174a30f8f8cSSatish Balay goto b_noinsert; \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay } \ 177a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 17877431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 179a30f8f8cSSatish Balay if (nrow >= rmax) { \ 180a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1811302d50aSBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 182a30f8f8cSSatish Balay MatScalar *new_a; \ 183a30f8f8cSSatish Balay \ 18477431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 185a30f8f8cSSatish Balay \ 186a30f8f8cSSatish Balay /* malloc new storage space */ \ 1871302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 18882502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1891302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 190a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 191a30f8f8cSSatish Balay \ 192a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 193a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 194a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 1951302d50aSBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 196a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 1971302d50aSBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 200a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 201a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 202a30f8f8cSSatish Balay /* free up old matrix storage */ \ 203a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 204a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 207a30f8f8cSSatish Balay } \ 208a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 209a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 210a30f8f8cSSatish Balay \ 211a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 212a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 21352e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 215a30f8f8cSSatish Balay b->reallocs++; \ 216a30f8f8cSSatish Balay b->nz++; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay N = nrow++ - 1; \ 219a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 220a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 221a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 222a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 223a30f8f8cSSatish Balay } \ 224a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 225a30f8f8cSSatish Balay rp[_i] = bcol; \ 226a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 227a30f8f8cSSatish Balay b_noinsert:; \ 228a30f8f8cSSatish Balay bilen[brow] = nrow; \ 229a30f8f8cSSatish Balay } 230a30f8f8cSSatish Balay #endif 231a30f8f8cSSatish Balay 232a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2334a2ae208SSatish Balay #undef __FUNCT__ 2344a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 2351302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 236a30f8f8cSSatish Balay { 237a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 238dfbe8321SBarry Smith PetscErrorCode ierr; 2391302d50aSBarry Smith PetscInt i,N = m*n; 240a30f8f8cSSatish Balay MatScalar *vsingle; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay PetscFunctionBegin; 243a30f8f8cSSatish Balay if (N > b->setvalueslen) { 244a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24582502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 246a30f8f8cSSatish Balay b->setvalueslen = N; 247a30f8f8cSSatish Balay } 248a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 249a30f8f8cSSatish Balay 250a30f8f8cSSatish Balay for (i=0; i<N; i++) { 251a30f8f8cSSatish Balay vsingle[i] = v[i]; 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 254a30f8f8cSSatish Balay PetscFunctionReturn(0); 255a30f8f8cSSatish Balay } 256a30f8f8cSSatish Balay 2574a2ae208SSatish Balay #undef __FUNCT__ 2584a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 2591302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 260a30f8f8cSSatish Balay { 261a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 262dfbe8321SBarry Smith PetscErrorCode ierr; 2631302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 264a30f8f8cSSatish Balay MatScalar *vsingle; 265a30f8f8cSSatish Balay 266a30f8f8cSSatish Balay PetscFunctionBegin; 267a30f8f8cSSatish Balay if (N > b->setvalueslen) { 268a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 270a30f8f8cSSatish Balay b->setvalueslen = N; 271a30f8f8cSSatish Balay } 272a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 273a30f8f8cSSatish Balay for (i=0; i<N; i++) { 274a30f8f8cSSatish Balay vsingle[i] = v[i]; 275a30f8f8cSSatish Balay } 276a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 277a30f8f8cSSatish Balay PetscFunctionReturn(0); 278a30f8f8cSSatish Balay } 279a30f8f8cSSatish Balay #endif 280a30f8f8cSSatish Balay 281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 282a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 283a30f8f8cSSatish Balay */ 2844a2ae208SSatish Balay #undef __FUNCT__ 285e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2861302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 287a30f8f8cSSatish Balay { 288a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 289a30f8f8cSSatish Balay MatScalar value; 290b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 291dfbe8321SBarry Smith PetscErrorCode ierr; 2921302d50aSBarry Smith PetscInt i,j,row,col; 2931302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2941302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 295521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 296a30f8f8cSSatish Balay 297a30f8f8cSSatish Balay /* Some Variables required in the macro */ 298a30f8f8cSSatish Balay Mat A = baij->A; 299a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 3001302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 301a30f8f8cSSatish Balay MatScalar *aa=a->a; 302a30f8f8cSSatish Balay 303a30f8f8cSSatish Balay Mat B = baij->B; 304a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 3051302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 306a30f8f8cSSatish Balay MatScalar *ba=b->a; 307a30f8f8cSSatish Balay 3081302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 3091302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 310a30f8f8cSSatish Balay MatScalar *ap,*bap; 311a30f8f8cSSatish Balay 312a30f8f8cSSatish Balay /* for stash */ 3131302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 314f65c83cfSHong Zhang MatScalar *v_loc=0; 315a30f8f8cSSatish Balay 316a30f8f8cSSatish Balay PetscFunctionBegin; 317a30f8f8cSSatish Balay 318a30f8f8cSSatish Balay if(!baij->donotstash){ 3191302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 32082502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay 323a30f8f8cSSatish Balay for (i=0; i<m; i++) { 324a30f8f8cSSatish Balay if (im[i] < 0) continue; 3252515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 32677431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 327a30f8f8cSSatish Balay #endif 328a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 329a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 330a30f8f8cSSatish Balay for (j=0; j<n; j++) { 331f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 332a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 333a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 334a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 335a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 336a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 337a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 338a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 339a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 34177431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 342a30f8f8cSSatish Balay #endif 343a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 344a30f8f8cSSatish Balay if (mat->was_assembled) { 345a30f8f8cSSatish Balay if (!baij->colmap) { 346653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 347a30f8f8cSSatish Balay } 348a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 349a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 35071730473SSatish Balay col = col - 1; 351a30f8f8cSSatish Balay #else 35271730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 353a30f8f8cSSatish Balay #endif 354a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 355a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 356a30f8f8cSSatish Balay col = in[j]; 357a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 358a30f8f8cSSatish Balay B = baij->B; 359a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 360a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 361a30f8f8cSSatish Balay ba=b->a; 36271730473SSatish Balay } else col += in[j]%bs; 363a30f8f8cSSatish Balay } else col = in[j]; 364a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 365a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 366a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 367a30f8f8cSSatish Balay } 368a30f8f8cSSatish Balay } 369a30f8f8cSSatish Balay } else { /* off processor entry */ 370a30f8f8cSSatish Balay if (!baij->donotstash) { 371a30f8f8cSSatish Balay n_loc = 0; 372a30f8f8cSSatish Balay for (j=0; j<n; j++){ 373f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 374a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 375a30f8f8cSSatish Balay if (roworiented) { 376a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 377a30f8f8cSSatish Balay } else { 378a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 379a30f8f8cSSatish Balay } 380a30f8f8cSSatish Balay n_loc++; 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay } 386a30f8f8cSSatish Balay 387a30f8f8cSSatish Balay if(!baij->donotstash){ 388a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 389a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 390a30f8f8cSSatish Balay } 391a30f8f8cSSatish Balay PetscFunctionReturn(0); 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay 3944a2ae208SSatish Balay #undef __FUNCT__ 395e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3961302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 397a30f8f8cSSatish Balay { 3980880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 399f15d580aSBarry Smith const MatScalar *value; 400f15d580aSBarry Smith MatScalar *barray=baij->barray; 4010880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 402dfbe8321SBarry Smith PetscErrorCode ierr; 4031302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 4041302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 405521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 4060880e062SHong Zhang 407a30f8f8cSSatish Balay PetscFunctionBegin; 4080880e062SHong Zhang if(!barray) { 4090880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4100880e062SHong Zhang baij->barray = barray; 4110880e062SHong Zhang } 4120880e062SHong Zhang 4130880e062SHong Zhang if (roworiented) { 4140880e062SHong Zhang stepval = (n-1)*bs; 4150880e062SHong Zhang } else { 4160880e062SHong Zhang stepval = (m-1)*bs; 4170880e062SHong Zhang } 4180880e062SHong Zhang for (i=0; i<m; i++) { 4190880e062SHong Zhang if (im[i] < 0) continue; 4202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 42177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 4220880e062SHong Zhang #endif 4230880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4240880e062SHong Zhang row = im[i] - rstart; 4250880e062SHong Zhang for (j=0; j<n; j++) { 4260880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4270880e062SHong Zhang if ((roworiented) && (n == 1)) { 428f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4290880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 430f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4310880e062SHong Zhang } else { /* Here a copy is required */ 4320880e062SHong Zhang if (roworiented) { 4330880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4340880e062SHong Zhang } else { 4350880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4360880e062SHong Zhang } 4370880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4380880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4390880e062SHong Zhang *barray++ = *value++; 4400880e062SHong Zhang } 4410880e062SHong Zhang } 4420880e062SHong Zhang barray -=bs2; 4430880e062SHong Zhang } 4440880e062SHong Zhang 4450880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4460880e062SHong Zhang col = in[j] - cstart; 4470880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4480880e062SHong Zhang } 4490880e062SHong Zhang else if (in[j] < 0) continue; 4502515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 45177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 4520880e062SHong Zhang #endif 4530880e062SHong Zhang else { 4540880e062SHong Zhang if (mat->was_assembled) { 4550880e062SHong Zhang if (!baij->colmap) { 456653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4570880e062SHong Zhang } 4580880e062SHong Zhang 4592515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 4600880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4611302d50aSBarry Smith { PetscInt data; 4620880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4630880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4640880e062SHong Zhang } 4650880e062SHong Zhang #else 4660880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4670880e062SHong Zhang #endif 4680880e062SHong Zhang #endif 4690880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4700880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4710880e062SHong Zhang col = (col - 1)/bs; 4720880e062SHong Zhang #else 4730880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4740880e062SHong Zhang #endif 4750880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4760880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4770880e062SHong Zhang col = in[j]; 4780880e062SHong Zhang } 4790880e062SHong Zhang } 4800880e062SHong Zhang else col = in[j]; 481e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4820880e062SHong Zhang } 4830880e062SHong Zhang } 4840880e062SHong Zhang } else { 4850880e062SHong Zhang if (!baij->donotstash) { 4860880e062SHong Zhang if (roworiented) { 4870880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4880880e062SHong Zhang } else { 4890880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang } 4930880e062SHong Zhang } 4940880e062SHong Zhang PetscFunctionReturn(0); 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay 4974a2ae208SSatish Balay #undef __FUNCT__ 4984a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4991302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 500a30f8f8cSSatish Balay { 501f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5026849ba73SBarry Smith PetscErrorCode ierr; 503521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 5041302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 505a30f8f8cSSatish Balay 506a30f8f8cSSatish Balay PetscFunctionBegin; 507a30f8f8cSSatish Balay for (i=0; i<m; i++) { 50877431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 50977431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 510a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 511a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 512a30f8f8cSSatish Balay for (j=0; j<n; j++) { 51377431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 51477431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 515a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 516a30f8f8cSSatish Balay col = idxn[j] - bscstart; 517c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 518a30f8f8cSSatish Balay } else { 519a30f8f8cSSatish Balay if (!baij->colmap) { 520653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 521a30f8f8cSSatish Balay } 522a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 523a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 524a30f8f8cSSatish Balay data --; 525a30f8f8cSSatish Balay #else 526a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 527a30f8f8cSSatish Balay #endif 528a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 529a30f8f8cSSatish Balay else { 530a30f8f8cSSatish Balay col = data + idxn[j]%bs; 531e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 532a30f8f8cSSatish Balay } 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay } 535a30f8f8cSSatish Balay } else { 53629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay PetscFunctionReturn(0); 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay 5424a2ae208SSatish Balay #undef __FUNCT__ 5434a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 544dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 545a30f8f8cSSatish Balay { 546a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 547dfbe8321SBarry Smith PetscErrorCode ierr; 548a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 549a30f8f8cSSatish Balay 550a30f8f8cSSatish Balay PetscFunctionBegin; 551a30f8f8cSSatish Balay if (baij->size == 1) { 552a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 553a30f8f8cSSatish Balay } else { 554a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 555f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 556a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 557a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 558a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 559a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 560d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 561a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 562a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 5630b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 5640b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 5650b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 5660b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 5670b8dc8d2SHong Zhang PetscInt *jj,*garray=baij->garray,rstart=baij->rstart,nz; 5680b8dc8d2SHong Zhang PetscInt brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs; 5690b8dc8d2SHong Zhang MatScalar *v; 5700b8dc8d2SHong Zhang 5710b8dc8d2SHong Zhang ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 5720b8dc8d2SHong Zhang rsum2 = rsum + mat->N; 5730b8dc8d2SHong Zhang ierr = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 5740b8dc8d2SHong Zhang /* Amat */ 5750b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5760b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5770b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5780b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5790b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5800b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5810b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5820b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5830b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5840b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5850b8dc8d2SHong Zhang /* non-diagonal block */ 5860b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5870b8dc8d2SHong Zhang } 5880b8dc8d2SHong Zhang } 5890b8dc8d2SHong Zhang } 5900b8dc8d2SHong Zhang } 5910b8dc8d2SHong Zhang /* Bmat */ 5920b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5930b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5940b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5950b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5960b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5970b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5980b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5990b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 6000b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6010b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6020b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6030b8dc8d2SHong Zhang } 6040b8dc8d2SHong Zhang } 6050b8dc8d2SHong Zhang } 6060b8dc8d2SHong Zhang } 6070b8dc8d2SHong Zhang ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 6080b8dc8d2SHong Zhang *norm = 0.0; 6090b8dc8d2SHong Zhang for (col=0; col<mat->N; col++) { 6100b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6110b8dc8d2SHong Zhang } 6120b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 613a30f8f8cSSatish Balay } else { 61429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 615a30f8f8cSSatish Balay } 616a30f8f8cSSatish Balay } 617a30f8f8cSSatish Balay PetscFunctionReturn(0); 618a30f8f8cSSatish Balay } 619a30f8f8cSSatish Balay 6204a2ae208SSatish Balay #undef __FUNCT__ 6214a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 622dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 623a30f8f8cSSatish Balay { 624a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 625dfbe8321SBarry Smith PetscErrorCode ierr; 6261302d50aSBarry Smith PetscInt nstash,reallocs; 627a30f8f8cSSatish Balay InsertMode addv; 628a30f8f8cSSatish Balay 629a30f8f8cSSatish Balay PetscFunctionBegin; 630a30f8f8cSSatish Balay if (baij->donotstash) { 631a30f8f8cSSatish Balay PetscFunctionReturn(0); 632a30f8f8cSSatish Balay } 633a30f8f8cSSatish Balay 634a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 635a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 636a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 63729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 638a30f8f8cSSatish Balay } 639a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 640a30f8f8cSSatish Balay 641a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 642a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 643a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 64463ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 645a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 64663ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 647a30f8f8cSSatish Balay PetscFunctionReturn(0); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 6504a2ae208SSatish Balay #undef __FUNCT__ 6514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 652dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 653a30f8f8cSSatish Balay { 654a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 655a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 656a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 6576849ba73SBarry Smith PetscErrorCode ierr; 65813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 6591302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 66013f74950SBarry Smith PetscMPIInt n; 661a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 662a30f8f8cSSatish Balay MatScalar *val; 663a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 664a30f8f8cSSatish Balay 665a30f8f8cSSatish Balay PetscFunctionBegin; 666a30f8f8cSSatish Balay 667a30f8f8cSSatish Balay if (!baij->donotstash) { 668a30f8f8cSSatish Balay while (1) { 669a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 670a30f8f8cSSatish Balay if (!flg) break; 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay for (i=0; i<n;) { 673a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 674a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 675a30f8f8cSSatish Balay if (j < n) ncols = j-i; 676a30f8f8cSSatish Balay else ncols = n-i; 677a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 678a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 679a30f8f8cSSatish Balay i = j; 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 683a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 684a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 685a30f8f8cSSatish Balay restore the original flags */ 686a30f8f8cSSatish Balay r1 = baij->roworiented; 687a30f8f8cSSatish Balay r2 = a->roworiented; 688a30f8f8cSSatish Balay r3 = b->roworiented; 689a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 690a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 691a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 692a30f8f8cSSatish Balay while (1) { 693a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 694a30f8f8cSSatish Balay if (!flg) break; 695a30f8f8cSSatish Balay 696a30f8f8cSSatish Balay for (i=0; i<n;) { 697a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 698a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 699a30f8f8cSSatish Balay if (j < n) ncols = j-i; 700a30f8f8cSSatish Balay else ncols = n-i; 701a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 702a30f8f8cSSatish Balay i = j; 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay } 705a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 706a30f8f8cSSatish Balay baij->roworiented = r1; 707a30f8f8cSSatish Balay a->roworiented = r2; 708a30f8f8cSSatish Balay b->roworiented = r3; 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay 711a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 713a30f8f8cSSatish Balay 714a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 715a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 716a30f8f8cSSatish Balay /* 717a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 718a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 719a30f8f8cSSatish Balay */ 720a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 721a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 722a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 723c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay 727a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 72840781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 729a30f8f8cSSatish Balay } 7304eb6d288SHong Zhang b->compressedrow.use = PETSC_TRUE; 731a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 732a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay if (baij->rowvalues) { 735a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 736a30f8f8cSSatish Balay baij->rowvalues = 0; 737a30f8f8cSSatish Balay } 7385222a1afSHong Zhang 739a30f8f8cSSatish Balay PetscFunctionReturn(0); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay 7424a2ae208SSatish Balay #undef __FUNCT__ 7434a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7446849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 748521d7252SBarry Smith PetscInt bs = mat->bs; 7491302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 75032077d6dSBarry Smith PetscTruth iascii,isdraw; 751b0a32e0cSBarry Smith PetscViewer sviewer; 752f3ef73ceSBarry Smith PetscViewerFormat format; 753a30f8f8cSSatish Balay 754a30f8f8cSSatish Balay PetscFunctionBegin; 75532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 756fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 75732077d6dSBarry Smith if (iascii) { 758b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 759456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 760a30f8f8cSSatish Balay MatInfo info; 761a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 762a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 76377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 76477431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 765521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 766a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 76777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 768a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 76977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 770b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 771a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 772a30f8f8cSSatish Balay PetscFunctionReturn(0); 773fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 77477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 775a30f8f8cSSatish Balay PetscFunctionReturn(0); 776a30f8f8cSSatish Balay } 777a30f8f8cSSatish Balay } 778a30f8f8cSSatish Balay 779a30f8f8cSSatish Balay if (isdraw) { 780b0a32e0cSBarry Smith PetscDraw draw; 781a30f8f8cSSatish Balay PetscTruth isnull; 782b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 783b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay 786a30f8f8cSSatish Balay if (size == 1) { 787e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 789a30f8f8cSSatish Balay } else { 790a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 791a30f8f8cSSatish Balay Mat A; 79265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 79365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7941302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 795a30f8f8cSSatish Balay MatScalar *a; 796a30f8f8cSSatish Balay 797f204ca49SKris Buschelman /* Should this be the same type as mat? */ 798a30f8f8cSSatish Balay if (!rank) { 799f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 800a30f8f8cSSatish Balay } else { 801f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 802a30f8f8cSSatish Balay } 803f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 804521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 80552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 806a30f8f8cSSatish Balay 807a30f8f8cSSatish Balay /* copy over the A part */ 80865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 809a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 8101302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 811a30f8f8cSSatish Balay 812a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 813a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 814a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 815a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 816a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 817a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 818a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 819a30f8f8cSSatish Balay col++; a += bs; 820a30f8f8cSSatish Balay } 821a30f8f8cSSatish Balay } 822a30f8f8cSSatish Balay } 823a30f8f8cSSatish Balay /* copy over the B part */ 82465d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 82565d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 826a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 827a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 828a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 829a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 830a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 831a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 832a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 833a30f8f8cSSatish Balay col++; a += bs; 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay } 836a30f8f8cSSatish Balay } 837a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 838a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 839a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 840a30f8f8cSSatish Balay /* 841a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 842b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 843a30f8f8cSSatish Balay */ 844b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 84565d70643SHong Zhang if (!rank) { 846e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 847a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 848a30f8f8cSSatish Balay } 849b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 850a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 851a30f8f8cSSatish Balay } 852a30f8f8cSSatish Balay PetscFunctionReturn(0); 853a30f8f8cSSatish Balay } 854a30f8f8cSSatish Balay 8554a2ae208SSatish Balay #undef __FUNCT__ 8564a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 857dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 858a30f8f8cSSatish Balay { 859dfbe8321SBarry Smith PetscErrorCode ierr; 86032077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 861a30f8f8cSSatish Balay 862a30f8f8cSSatish Balay PetscFunctionBegin; 86332077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 864fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 865b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 866fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 86732077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 868a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 869a30f8f8cSSatish Balay } else { 8701302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 871a30f8f8cSSatish Balay } 872a30f8f8cSSatish Balay PetscFunctionReturn(0); 873a30f8f8cSSatish Balay } 874a30f8f8cSSatish Balay 8754a2ae208SSatish Balay #undef __FUNCT__ 8764a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 877dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 878a30f8f8cSSatish Balay { 879a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 880dfbe8321SBarry Smith PetscErrorCode ierr; 881a30f8f8cSSatish Balay 882a30f8f8cSSatish Balay PetscFunctionBegin; 883a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 88477431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 885a30f8f8cSSatish Balay #endif 886a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 887a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 888a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 889a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 890a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 891a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 892a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 893a30f8f8cSSatish Balay #else 894a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 895a30f8f8cSSatish Balay #endif 896a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 897a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 898a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 89940781036SHong Zhang if (baij->slvec0) { 90040781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 90140781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 90240781036SHong Zhang } 90340781036SHong Zhang if (baij->slvec1) { 90440781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 90540781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 90640781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 90740781036SHong Zhang } 90840781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 909a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 910a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 911a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 912a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 913a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 914a30f8f8cSSatish Balay #endif 915a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 916901853e0SKris Buschelman 917901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 918901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 919901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 920901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 921a30f8f8cSSatish Balay PetscFunctionReturn(0); 922a30f8f8cSSatish Balay } 923a30f8f8cSSatish Balay 9244a2ae208SSatish Balay #undef __FUNCT__ 925a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 926dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 927a9d4b620SHong Zhang { 928a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 929dfbe8321SBarry Smith PetscErrorCode ierr; 930521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 931a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 932a9d4b620SHong Zhang 933a9d4b620SHong Zhang PetscFunctionBegin; 934a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 935a9d4b620SHong Zhang if (nt != A->n) { 936a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 937a9d4b620SHong Zhang } 938a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 939a9d4b620SHong Zhang if (nt != A->m) { 940a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 941a9d4b620SHong Zhang } 942a9d4b620SHong Zhang 943a9d4b620SHong Zhang /* diagonal part */ 944a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 945a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 946a9d4b620SHong Zhang 947a9d4b620SHong Zhang /* subdiagonal part */ 948a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 949a9d4b620SHong Zhang 950a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9511ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9521ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 953a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9541ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 955a9d4b620SHong Zhang 956a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9571ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 958a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 959a9d4b620SHong Zhang 960a9d4b620SHong Zhang /* supperdiagonal part */ 961a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 962a9d4b620SHong Zhang 963a9d4b620SHong Zhang PetscFunctionReturn(0); 964a9d4b620SHong Zhang } 965a9d4b620SHong Zhang 966a9d4b620SHong Zhang #undef __FUNCT__ 96740781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 968dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 969a30f8f8cSSatish Balay { 970a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 971dfbe8321SBarry Smith PetscErrorCode ierr; 9721302d50aSBarry Smith PetscInt nt; 973a30f8f8cSSatish Balay 974a30f8f8cSSatish Balay PetscFunctionBegin; 975a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 976b5df2d14SHong Zhang if (nt != A->n) { 97729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 978a30f8f8cSSatish Balay } 979a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 980b5df2d14SHong Zhang if (nt != A->m) { 98129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 982a30f8f8cSSatish Balay } 98365d70643SHong Zhang 984b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 985b941877fSHong Zhang /* do diagonal part */ 986b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 987b941877fSHong Zhang /* do supperdiagonal part */ 988b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 989b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 990b941877fSHong Zhang /* do subdiagonal part */ 991b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 992b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 993b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 99465d70643SHong Zhang 995a30f8f8cSSatish Balay PetscFunctionReturn(0); 996a30f8f8cSSatish Balay } 997a30f8f8cSSatish Balay 9984a2ae208SSatish Balay #undef __FUNCT__ 9994a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1000dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1001a30f8f8cSSatish Balay { 1002de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1003dfbe8321SBarry Smith PetscErrorCode ierr; 1004521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 1005a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1006a9d4b620SHong Zhang 1007a9d4b620SHong Zhang PetscFunctionBegin; 1008a9d4b620SHong Zhang /* 100956faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 101056faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1011a9d4b620SHong Zhang */ 1012a9d4b620SHong Zhang /* diagonal part */ 1013a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1014a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1015a9d4b620SHong Zhang 1016a9d4b620SHong Zhang /* subdiagonal part */ 1017a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1018a9d4b620SHong Zhang 1019a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10201ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10211ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1022a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 10231ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1024a9d4b620SHong Zhang 1025a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 10261ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1027a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1028a9d4b620SHong Zhang 1029a9d4b620SHong Zhang /* supperdiagonal part */ 1030a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1031a9d4b620SHong Zhang 1032a9d4b620SHong Zhang PetscFunctionReturn(0); 1033a9d4b620SHong Zhang } 1034a9d4b620SHong Zhang 1035a9d4b620SHong Zhang #undef __FUNCT__ 1036a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1037dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1038a9d4b620SHong Zhang { 1039a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1040dfbe8321SBarry Smith PetscErrorCode ierr; 1041a30f8f8cSSatish Balay 1042a30f8f8cSSatish Balay PetscFunctionBegin; 1043b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1044b941877fSHong Zhang /* do diagonal part */ 1045b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1046b941877fSHong Zhang /* do supperdiagonal part */ 1047b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1048de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1049de8b6608SHong Zhang 1050b941877fSHong Zhang /* do subdiagonal part */ 1051a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1052a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1053a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1054aa482183SHong Zhang 1055a30f8f8cSSatish Balay PetscFunctionReturn(0); 1056a30f8f8cSSatish Balay } 1057a30f8f8cSSatish Balay 10584a2ae208SSatish Balay #undef __FUNCT__ 10594a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1060dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1061a30f8f8cSSatish Balay { 1062dfbe8321SBarry Smith PetscErrorCode ierr; 10635a7c0312SHong Zhang 1064a30f8f8cSSatish Balay PetscFunctionBegin; 10655a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10665a7c0312SHong Zhang PetscFunctionReturn(0); 1067a30f8f8cSSatish Balay } 1068a30f8f8cSSatish Balay 10694a2ae208SSatish Balay #undef __FUNCT__ 10704a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1071dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1072a30f8f8cSSatish Balay { 1073dfbe8321SBarry Smith PetscErrorCode ierr; 10745a7c0312SHong Zhang 1075a30f8f8cSSatish Balay PetscFunctionBegin; 10765a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10775a7c0312SHong Zhang PetscFunctionReturn(0); 1078a30f8f8cSSatish Balay } 1079a30f8f8cSSatish Balay 1080a30f8f8cSSatish Balay /* 1081a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1082a30f8f8cSSatish Balay diagonal block 1083a30f8f8cSSatish Balay */ 10844a2ae208SSatish Balay #undef __FUNCT__ 10854a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1086dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1087a30f8f8cSSatish Balay { 1088a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1089dfbe8321SBarry Smith PetscErrorCode ierr; 1090a30f8f8cSSatish Balay 1091a30f8f8cSSatish Balay PetscFunctionBegin; 109229bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1093a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1094a30f8f8cSSatish Balay PetscFunctionReturn(0); 1095a30f8f8cSSatish Balay } 1096a30f8f8cSSatish Balay 10974a2ae208SSatish Balay #undef __FUNCT__ 10984a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1099dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1100a30f8f8cSSatish Balay { 1101a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1102dfbe8321SBarry Smith PetscErrorCode ierr; 1103a30f8f8cSSatish Balay 1104a30f8f8cSSatish Balay PetscFunctionBegin; 1105a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1106a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1107a30f8f8cSSatish Balay PetscFunctionReturn(0); 1108a30f8f8cSSatish Balay } 1109a30f8f8cSSatish Balay 11104a2ae208SSatish Balay #undef __FUNCT__ 11114a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11121302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1113a30f8f8cSSatish Balay { 1114a30f8f8cSSatish Balay PetscFunctionBegin; 111580e57f9fSHong Zhang SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format"); 1116a30f8f8cSSatish Balay PetscFunctionReturn(0); 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay 11194a2ae208SSatish Balay #undef __FUNCT__ 11204a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11211302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1122a30f8f8cSSatish Balay { 1123a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1124a30f8f8cSSatish Balay 1125a30f8f8cSSatish Balay PetscFunctionBegin; 1126abc0a331SBarry Smith if (!baij->getrowactive) { 1127abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1128a30f8f8cSSatish Balay } 1129a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1130a30f8f8cSSatish Balay PetscFunctionReturn(0); 1131a30f8f8cSSatish Balay } 1132a30f8f8cSSatish Balay 11334a2ae208SSatish Balay #undef __FUNCT__ 11344a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1135dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1136a30f8f8cSSatish Balay { 1137a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1138dfbe8321SBarry Smith PetscErrorCode ierr; 1139a30f8f8cSSatish Balay 1140a30f8f8cSSatish Balay PetscFunctionBegin; 1141a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1142a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1143a30f8f8cSSatish Balay PetscFunctionReturn(0); 1144a30f8f8cSSatish Balay } 1145a30f8f8cSSatish Balay 11464a2ae208SSatish Balay #undef __FUNCT__ 11474a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1148dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1149a30f8f8cSSatish Balay { 1150a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1151a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1152dfbe8321SBarry Smith PetscErrorCode ierr; 1153a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1154a30f8f8cSSatish Balay 1155a30f8f8cSSatish Balay PetscFunctionBegin; 1156521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1157a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1158a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1159a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1160a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1161a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1162a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1163a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1164a30f8f8cSSatish Balay info->nz_used = isend[0]; 1165a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1166a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1167a30f8f8cSSatish Balay info->memory = isend[3]; 1168a30f8f8cSSatish Balay info->mallocs = isend[4]; 1169a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1170d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1171a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1172a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1173a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1174a30f8f8cSSatish Balay info->memory = irecv[3]; 1175a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1176a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1177d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1178a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1179a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1180a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1181a30f8f8cSSatish Balay info->memory = irecv[3]; 1182a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1183a30f8f8cSSatish Balay } else { 118477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1185a30f8f8cSSatish Balay } 1186f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1187f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1188f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1189f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1190a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1191a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1192a30f8f8cSSatish Balay info->factor_mallocs = 0; 1193a30f8f8cSSatish Balay PetscFunctionReturn(0); 1194a30f8f8cSSatish Balay } 1195a30f8f8cSSatish Balay 11964a2ae208SSatish Balay #undef __FUNCT__ 11974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1198dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1199a30f8f8cSSatish Balay { 1200a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1201dfbe8321SBarry Smith PetscErrorCode ierr; 1202a30f8f8cSSatish Balay 1203a30f8f8cSSatish Balay PetscFunctionBegin; 1204e98b92d7SKris Buschelman switch (op) { 1205e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1206e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1207e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1208e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1209e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1210e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1211e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1212a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1213a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1214e98b92d7SKris Buschelman break; 1215e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1216a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1217a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1218a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1219e98b92d7SKris Buschelman break; 1220e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1221e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1222e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 122363ba0a88SBarry Smith ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr); 1224e98b92d7SKris Buschelman break; 1225e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1226a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1227a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1228a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1229e98b92d7SKris Buschelman break; 1230e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1231a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1232e98b92d7SKris Buschelman break; 1233e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 123429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1235e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1236a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1237e98b92d7SKris Buschelman break; 12389a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12399a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12409a4540c5SBarry Smith case MAT_HERMITIAN: 12419a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 124277e54ba9SKris Buschelman case MAT_SYMMETRIC: 124377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12449a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12459a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12469a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 124777e54ba9SKris Buschelman break; 1248e98b92d7SKris Buschelman default: 124929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1250a30f8f8cSSatish Balay } 1251a30f8f8cSSatish Balay PetscFunctionReturn(0); 1252a30f8f8cSSatish Balay } 1253a30f8f8cSSatish Balay 12544a2ae208SSatish Balay #undef __FUNCT__ 12558115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1256dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1257a30f8f8cSSatish Balay { 1258dfbe8321SBarry Smith PetscErrorCode ierr; 1259a30f8f8cSSatish Balay PetscFunctionBegin; 1260999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12618115998fSBarry Smith PetscFunctionReturn(0); 1262a30f8f8cSSatish Balay } 1263a30f8f8cSSatish Balay 12644a2ae208SSatish Balay #undef __FUNCT__ 12654a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1266dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1267a30f8f8cSSatish Balay { 1268a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1269a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1270dfbe8321SBarry Smith PetscErrorCode ierr; 12715e90f9d9SHong Zhang PetscInt nv,m,n; 1272b3bf805bSHong Zhang PetscTruth flg; 1273a30f8f8cSSatish Balay 1274a30f8f8cSSatish Balay PetscFunctionBegin; 1275a30f8f8cSSatish Balay if (ll != rr){ 1276b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1277b3bf805bSHong Zhang if (!flg) 127829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1279a30f8f8cSSatish Balay } 1280b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1281b3bf805bSHong Zhang 12825e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12835e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1284b3bf805bSHong Zhang 12855e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12865e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12875e90f9d9SHong Zhang 1288a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 12895e90f9d9SHong Zhang 12905e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1291a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12925e90f9d9SHong Zhang 12935e90f9d9SHong Zhang /* scale the diagonal part */ 1294a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1295a30f8f8cSSatish Balay 12965e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1297a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1298a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1299a30f8f8cSSatish Balay PetscFunctionReturn(0); 1300a30f8f8cSSatish Balay } 1301a30f8f8cSSatish Balay 13024a2ae208SSatish Balay #undef __FUNCT__ 13034a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1304dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1305a30f8f8cSSatish Balay { 1306a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1307a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 13081302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1309dfbe8321SBarry Smith PetscErrorCode ierr; 1310a30f8f8cSSatish Balay 1311a30f8f8cSSatish Balay PetscFunctionBegin; 1312a30f8f8cSSatish Balay if (!a->rank) { 1313a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1314a30f8f8cSSatish Balay } 13151302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1316a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1317a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1318a30f8f8cSSatish Balay PetscFunctionReturn(0); 1319a30f8f8cSSatish Balay } 1320a30f8f8cSSatish Balay 13214a2ae208SSatish Balay #undef __FUNCT__ 13224a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1323dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1324a30f8f8cSSatish Balay { 1325f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1326dfbe8321SBarry Smith PetscErrorCode ierr; 1327a30f8f8cSSatish Balay 1328a30f8f8cSSatish Balay PetscFunctionBegin; 1329a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1330a30f8f8cSSatish Balay PetscFunctionReturn(0); 1331a30f8f8cSSatish Balay } 1332a30f8f8cSSatish Balay 13336849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1334a30f8f8cSSatish Balay 13354a2ae208SSatish Balay #undef __FUNCT__ 13364a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1337dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1338a30f8f8cSSatish Balay { 1339a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1340a30f8f8cSSatish Balay Mat a,b,c,d; 1341a30f8f8cSSatish Balay PetscTruth flg; 1342dfbe8321SBarry Smith PetscErrorCode ierr; 1343a30f8f8cSSatish Balay 1344a30f8f8cSSatish Balay PetscFunctionBegin; 1345a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1346a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1347a30f8f8cSSatish Balay 1348a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1349abc0a331SBarry Smith if (flg) { 1350a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1351a30f8f8cSSatish Balay } 1352a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1353a30f8f8cSSatish Balay PetscFunctionReturn(0); 1354a30f8f8cSSatish Balay } 1355a30f8f8cSSatish Balay 13564a2ae208SSatish Balay #undef __FUNCT__ 13574a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1358dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1359273d9f13SBarry Smith { 1360dfbe8321SBarry Smith PetscErrorCode ierr; 1361273d9f13SBarry Smith 1362273d9f13SBarry Smith PetscFunctionBegin; 1363273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1364273d9f13SBarry Smith PetscFunctionReturn(0); 1365273d9f13SBarry Smith } 1366a5e6ed63SBarry Smith 1367a5e6ed63SBarry Smith #undef __FUNCT__ 1368a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 13691302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1370a5e6ed63SBarry Smith { 13716849ba73SBarry Smith PetscErrorCode ierr; 13721302d50aSBarry Smith PetscInt i; 1373a5e6ed63SBarry Smith PetscTruth flg; 1374a5e6ed63SBarry Smith 13756849ba73SBarry Smith PetscFunctionBegin; 1376a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1377a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1378a5e6ed63SBarry Smith if (!flg) { 13791302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1380a5e6ed63SBarry Smith } 1381a5e6ed63SBarry Smith } 1382a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1383a5e6ed63SBarry Smith PetscFunctionReturn(0); 1384a5e6ed63SBarry Smith } 1385a5e6ed63SBarry Smith 1386a5e6ed63SBarry Smith 1387a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1388a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1389a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1390a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1391a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1392a9d4b620SHong Zhang MatMult_MPISBAIJ, 139397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1394a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1395a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1396a30f8f8cSSatish Balay 0, 1397a30f8f8cSSatish Balay 0, 1398a30f8f8cSSatish Balay 0, 139997304618SKris Buschelman /*10*/ 0, 1400a30f8f8cSSatish Balay 0, 1401a30f8f8cSSatish Balay 0, 14022798e883SHong Zhang MatRelax_MPISBAIJ, 1403a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 140497304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1405a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1406a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1407a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1408a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 140997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1410a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1411a30f8f8cSSatish Balay 0, 1412a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1413a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1414dcf5cc72SBarry Smith /*25*/ 0, 1415a30f8f8cSSatish Balay 0, 1416a30f8f8cSSatish Balay 0, 1417a30f8f8cSSatish Balay 0, 1418a30f8f8cSSatish Balay 0, 141997304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1420b5df2d14SHong Zhang 0, 1421a30f8f8cSSatish Balay 0, 1422a30f8f8cSSatish Balay 0, 1423a30f8f8cSSatish Balay 0, 142497304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1425a30f8f8cSSatish Balay 0, 1426a30f8f8cSSatish Balay 0, 1427a30f8f8cSSatish Balay 0, 1428a30f8f8cSSatish Balay 0, 142997304618SKris Buschelman /*40*/ 0, 1430a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1431d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1432a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1433a30f8f8cSSatish Balay 0, 143497304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1435a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1436a30f8f8cSSatish Balay 0, 1437a30f8f8cSSatish Balay 0, 1438a30f8f8cSSatish Balay 0, 1439521d7252SBarry Smith /*50*/ 0, 1440a30f8f8cSSatish Balay 0, 1441a30f8f8cSSatish Balay 0, 1442a30f8f8cSSatish Balay 0, 1443a30f8f8cSSatish Balay 0, 144497304618SKris Buschelman /*55*/ 0, 1445a30f8f8cSSatish Balay 0, 1446a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1447a30f8f8cSSatish Balay 0, 1448a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 144997304618SKris Buschelman /*60*/ 0, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 14528a124369SBarry Smith MatGetPetscMaps_Petsc, 145324d5174aSHong Zhang 0, 145497304618SKris Buschelman /*65*/ 0, 145524d5174aSHong Zhang 0, 145624d5174aSHong Zhang 0, 145724d5174aSHong Zhang 0, 145824d5174aSHong Zhang 0, 145997304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 146024d5174aSHong Zhang 0, 146197304618SKris Buschelman 0, 146297304618SKris Buschelman 0, 146397304618SKris Buschelman 0, 146497304618SKris Buschelman /*75*/ 0, 146597304618SKris Buschelman 0, 146697304618SKris Buschelman 0, 146797304618SKris Buschelman 0, 146897304618SKris Buschelman 0, 146997304618SKris Buschelman /*80*/ 0, 147097304618SKris Buschelman 0, 147197304618SKris Buschelman 0, 147297304618SKris Buschelman 0, 1473865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1474865e5f61SKris Buschelman /*85*/ 0, 1475865e5f61SKris Buschelman 0, 1476865e5f61SKris Buschelman 0, 1477865e5f61SKris Buschelman 0, 1478865e5f61SKris Buschelman 0, 1479865e5f61SKris Buschelman /*90*/ 0, 1480865e5f61SKris Buschelman 0, 1481865e5f61SKris Buschelman 0, 1482865e5f61SKris Buschelman 0, 1483865e5f61SKris Buschelman 0, 1484865e5f61SKris Buschelman /*95*/ 0, 1485865e5f61SKris Buschelman 0, 1486865e5f61SKris Buschelman 0, 1487865e5f61SKris Buschelman 0}; 1488a30f8f8cSSatish Balay 1489a30f8f8cSSatish Balay 1490a30f8f8cSSatish Balay EXTERN_C_BEGIN 14914a2ae208SSatish Balay #undef __FUNCT__ 14924a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1493*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1494a30f8f8cSSatish Balay { 1495a30f8f8cSSatish Balay PetscFunctionBegin; 1496a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1497a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1498a30f8f8cSSatish Balay PetscFunctionReturn(0); 1499a30f8f8cSSatish Balay } 1500a30f8f8cSSatish Balay EXTERN_C_END 1501a30f8f8cSSatish Balay 1502273d9f13SBarry Smith EXTERN_C_BEGIN 15034a2ae208SSatish Balay #undef __FUNCT__ 1504a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1505*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1506a23d5eceSKris Buschelman { 1507a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1508dfbe8321SBarry Smith PetscErrorCode ierr; 15091302d50aSBarry Smith PetscInt i,mbs,Mbs; 1510a23d5eceSKris Buschelman 1511a23d5eceSKris Buschelman PetscFunctionBegin; 1512a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1513a23d5eceSKris Buschelman 1514a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1515a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1516a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 151777431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 151877431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1519a23d5eceSKris Buschelman if (d_nnz) { 1520a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 152177431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1522a23d5eceSKris Buschelman } 1523a23d5eceSKris Buschelman } 1524a23d5eceSKris Buschelman if (o_nnz) { 1525a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 152677431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1527a23d5eceSKris Buschelman } 1528a23d5eceSKris Buschelman } 1529a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1530a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1531a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1532a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1533a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1534a23d5eceSKris Buschelman 1535a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1536a23d5eceSKris Buschelman mbs = B->m/bs; 1537a23d5eceSKris Buschelman Mbs = B->M/bs; 1538a23d5eceSKris Buschelman if (mbs*bs != B->m) { 153977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1540a23d5eceSKris Buschelman } 1541a23d5eceSKris Buschelman 1542521d7252SBarry Smith B->bs = bs; 1543a23d5eceSKris Buschelman b->bs2 = bs*bs; 1544a23d5eceSKris Buschelman b->mbs = mbs; 1545a23d5eceSKris Buschelman b->nbs = mbs; 1546a23d5eceSKris Buschelman b->Mbs = Mbs; 1547a23d5eceSKris Buschelman b->Nbs = Mbs; 1548a23d5eceSKris Buschelman 1549a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1550a23d5eceSKris Buschelman b->rowners[0] = 0; 1551a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1552a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1553a23d5eceSKris Buschelman } 1554a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1555a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1556a23d5eceSKris Buschelman b->cstart = b->rstart; 1557a23d5eceSKris Buschelman b->cend = b->rend; 1558a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1559a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1560a23d5eceSKris Buschelman } 1561a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1562a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1563a23d5eceSKris Buschelman 1564a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1565a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1566a23d5eceSKris Buschelman 15679c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 15689c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1569c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 157052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 15719c097c71SKris Buschelman 15729c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 15734aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1574589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 157552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1576a23d5eceSKris Buschelman 1577a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1578a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1579a23d5eceSKris Buschelman 1580a23d5eceSKris Buschelman PetscFunctionReturn(0); 1581a23d5eceSKris Buschelman } 1582a23d5eceSKris Buschelman EXTERN_C_END 1583a23d5eceSKris Buschelman 15840bad9183SKris Buschelman /*MC 1585fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 15860bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 15870bad9183SKris Buschelman 15880bad9183SKris Buschelman Options Database Keys: 15890bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 15900bad9183SKris Buschelman 15910bad9183SKris Buschelman Level: beginner 15920bad9183SKris Buschelman 15930bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 15940bad9183SKris Buschelman M*/ 15950bad9183SKris Buschelman 1596a23d5eceSKris Buschelman EXTERN_C_BEGIN 1597a23d5eceSKris Buschelman #undef __FUNCT__ 15984a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1599*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1600b5df2d14SHong Zhang { 1601b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1602dfbe8321SBarry Smith PetscErrorCode ierr; 1603b5df2d14SHong Zhang PetscTruth flg; 1604b5df2d14SHong Zhang 1605b5df2d14SHong Zhang PetscFunctionBegin; 1606b5df2d14SHong Zhang 1607b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1608b0a32e0cSBarry Smith B->data = (void*)b; 1609b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1610b5df2d14SHong Zhang 1611b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1612b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1613b5df2d14SHong Zhang B->mapping = 0; 1614b5df2d14SHong Zhang B->factor = 0; 1615b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1616b5df2d14SHong Zhang 1617b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1618b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1619b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1620b5df2d14SHong Zhang 1621b5df2d14SHong Zhang /* build local table of row and column ownerships */ 16221302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1623273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1624273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 162552e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1626b5df2d14SHong Zhang 1627b5df2d14SHong Zhang /* build cache for off array entries formed */ 1628b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1629b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1630b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1631b5df2d14SHong Zhang b->garray = PETSC_NULL; 1632b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1633b5df2d14SHong Zhang 1634f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1635b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 163664a35ccbSBarry Smith b->setvalueslen = 0; 1637b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1638b5df2d14SHong Zhang #endif 1639b5df2d14SHong Zhang 1640b5df2d14SHong Zhang /* stuff used in block assembly */ 1641b5df2d14SHong Zhang b->barray = 0; 1642b5df2d14SHong Zhang 1643b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1644b5df2d14SHong Zhang b->lvec = 0; 1645b5df2d14SHong Zhang b->Mvctx = 0; 164640781036SHong Zhang b->slvec0 = 0; 164740781036SHong Zhang b->slvec0b = 0; 164840781036SHong Zhang b->slvec1 = 0; 164940781036SHong Zhang b->slvec1a = 0; 165040781036SHong Zhang b->slvec1b = 0; 165140781036SHong Zhang b->sMvctx = 0; 1652b5df2d14SHong Zhang 1653b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1654b5df2d14SHong Zhang b->rowindices = 0; 1655b5df2d14SHong Zhang b->rowvalues = 0; 1656b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1657b5df2d14SHong Zhang 1658b5df2d14SHong Zhang /* hash table stuff */ 1659b5df2d14SHong Zhang b->ht = 0; 1660b5df2d14SHong Zhang b->hd = 0; 1661b5df2d14SHong Zhang b->ht_size = 0; 1662b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1663b5df2d14SHong Zhang b->ht_fact = 0; 1664b5df2d14SHong Zhang b->ht_total_ct = 0; 1665b5df2d14SHong Zhang b->ht_insert_ct = 0; 1666b5df2d14SHong Zhang 1667e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1668b5df2d14SHong Zhang if (flg) { 1669f6275e2eSBarry Smith PetscReal fact = 1.39; 1670b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1671e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1672b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1673b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 167463ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr); 1675b5df2d14SHong Zhang } 1676b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1677b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1678b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1679b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1680b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1681b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1682b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1683b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1684b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1685a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1686a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1687a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 168823ce1328SBarry Smith B->symmetric = PETSC_TRUE; 168923ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 169023ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 169123ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1692b5df2d14SHong Zhang PetscFunctionReturn(0); 1693b5df2d14SHong Zhang } 1694273d9f13SBarry Smith EXTERN_C_END 1695b5df2d14SHong Zhang 1696209238afSKris Buschelman /*MC 1697002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1698209238afSKris Buschelman 1699209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1700209238afSKris Buschelman and MATMPISBAIJ otherwise. 1701209238afSKris Buschelman 1702209238afSKris Buschelman Options Database Keys: 1703209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1704209238afSKris Buschelman 1705209238afSKris Buschelman Level: beginner 1706209238afSKris Buschelman 1707209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1708209238afSKris Buschelman M*/ 1709209238afSKris Buschelman 1710209238afSKris Buschelman EXTERN_C_BEGIN 1711209238afSKris Buschelman #undef __FUNCT__ 1712209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1713*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1714dfbe8321SBarry Smith { 17156849ba73SBarry Smith PetscErrorCode ierr; 17161302d50aSBarry Smith PetscMPIInt size; 1717209238afSKris Buschelman 1718209238afSKris Buschelman PetscFunctionBegin; 1719209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1720209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1721209238afSKris Buschelman if (size == 1) { 1722209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1723209238afSKris Buschelman } else { 1724209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1725209238afSKris Buschelman } 1726209238afSKris Buschelman PetscFunctionReturn(0); 1727209238afSKris Buschelman } 1728209238afSKris Buschelman EXTERN_C_END 1729209238afSKris Buschelman 17304a2ae208SSatish Balay #undef __FUNCT__ 17314a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1732b5df2d14SHong Zhang /*@C 1733b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1734b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1735b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1736b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1737b5df2d14SHong Zhang 1738b5df2d14SHong Zhang Collective on Mat 1739b5df2d14SHong Zhang 1740b5df2d14SHong Zhang Input Parameters: 1741b5df2d14SHong Zhang + A - the matrix 1742b5df2d14SHong Zhang . bs - size of blockk 1743b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1744b5df2d14SHong Zhang submatrix (same for all local rows) 1745b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17466d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17476d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17486d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1749b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1750b5df2d14SHong Zhang submatrix (same for all local rows). 1751b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1752b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1753b5df2d14SHong Zhang each block row) or PETSC_NULL. 1754b5df2d14SHong Zhang 1755b5df2d14SHong Zhang 1756b5df2d14SHong Zhang Options Database Keys: 1757b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1758b5df2d14SHong Zhang block calculations (much slower) 1759b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1760b5df2d14SHong Zhang 1761b5df2d14SHong Zhang Notes: 1762b5df2d14SHong Zhang 1763b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1764b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1765b5df2d14SHong Zhang 176649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 176749a6f317SBarry Smith 1768b5df2d14SHong Zhang Storage Information: 1769b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1770b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1771b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1772b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1773b5df2d14SHong Zhang 1774b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1775b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1776b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1777b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1778b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1779b5df2d14SHong Zhang 1780b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1781b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1782b5df2d14SHong Zhang 1783b5df2d14SHong Zhang .vb 1784b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1785b5df2d14SHong Zhang ------------------- 1786b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1787b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1788b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1789b5df2d14SHong Zhang ------------------- 1790b5df2d14SHong Zhang .ve 1791b5df2d14SHong Zhang 1792b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1793b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17946d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17956d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1796b5df2d14SHong Zhang 17976d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17986d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1799b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1800b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1801b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1802b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1803b5df2d14SHong Zhang matrices. 1804b5df2d14SHong Zhang 1805b5df2d14SHong Zhang Level: intermediate 1806b5df2d14SHong Zhang 1807b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1808b5df2d14SHong Zhang 1809b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1810b5df2d14SHong Zhang @*/ 1811*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1812b5df2d14SHong Zhang { 18131302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1814b5df2d14SHong Zhang 1815b5df2d14SHong Zhang PetscFunctionBegin; 1816a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1817a23d5eceSKris Buschelman if (f) { 1818a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1819b5df2d14SHong Zhang } 1820b5df2d14SHong Zhang PetscFunctionReturn(0); 1821b5df2d14SHong Zhang } 1822b5df2d14SHong Zhang 18234a2ae208SSatish Balay #undef __FUNCT__ 18244a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1825a30f8f8cSSatish Balay /*@C 1826a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1827a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1828a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1829a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1830a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1831a30f8f8cSSatish Balay 1832a30f8f8cSSatish Balay Collective on MPI_Comm 1833a30f8f8cSSatish Balay 1834a30f8f8cSSatish Balay Input Parameters: 1835a30f8f8cSSatish Balay + comm - MPI communicator 1836a30f8f8cSSatish Balay . bs - size of blockk 1837a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1838a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1839a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1840a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1841a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1842a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1843a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1844a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1845a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1846a30f8f8cSSatish Balay submatrix (same for all local rows) 1847a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 18486d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 18496d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 18506d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1851a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1852a30f8f8cSSatish Balay submatrix (same for all local rows). 1853a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1854a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1855a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1856a30f8f8cSSatish Balay 1857a30f8f8cSSatish Balay Output Parameter: 1858a30f8f8cSSatish Balay . A - the matrix 1859a30f8f8cSSatish Balay 1860a30f8f8cSSatish Balay Options Database Keys: 1861a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1862a30f8f8cSSatish Balay block calculations (much slower) 1863a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1864a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1865a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1866a30f8f8cSSatish Balay 1867a30f8f8cSSatish Balay Notes: 1868d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1869d1be2dadSMatthew Knepley 1870a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1871a30f8f8cSSatish Balay (possibly both). 1872a30f8f8cSSatish Balay 1873a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1874a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1875a30f8f8cSSatish Balay 187649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187749a6f317SBarry Smith 1878a30f8f8cSSatish Balay Storage Information: 1879a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1880a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1881a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1882a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1883a30f8f8cSSatish Balay 1884a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1885a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1886a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1887a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1888a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1889a30f8f8cSSatish Balay 1890a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1891a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1892a30f8f8cSSatish Balay 1893a30f8f8cSSatish Balay .vb 1894a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1895a30f8f8cSSatish Balay ------------------- 1896a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1897a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1898a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1899a30f8f8cSSatish Balay ------------------- 1900a30f8f8cSSatish Balay .ve 1901a30f8f8cSSatish Balay 1902a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1903a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19046d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19056d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1906a30f8f8cSSatish Balay 19076d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19086d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1909a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1910a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1911a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1912a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1913a30f8f8cSSatish Balay matrices. 1914a30f8f8cSSatish Balay 1915a30f8f8cSSatish Balay Level: intermediate 1916a30f8f8cSSatish Balay 1917a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1918a30f8f8cSSatish Balay 1919a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1920a30f8f8cSSatish Balay @*/ 1921a30f8f8cSSatish Balay 1922*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1923a30f8f8cSSatish Balay { 19246849ba73SBarry Smith PetscErrorCode ierr; 19251302d50aSBarry Smith PetscMPIInt size; 1926a30f8f8cSSatish Balay 1927a30f8f8cSSatish Balay PetscFunctionBegin; 1928b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1929273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1930273d9f13SBarry Smith if (size > 1) { 1931b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1932b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1933273d9f13SBarry Smith } else { 1934273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1935273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1936273d9f13SBarry Smith } 1937a30f8f8cSSatish Balay PetscFunctionReturn(0); 1938a30f8f8cSSatish Balay } 1939a30f8f8cSSatish Balay 1940a30f8f8cSSatish Balay 19414a2ae208SSatish Balay #undef __FUNCT__ 19424a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 19436849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1944a30f8f8cSSatish Balay { 1945a30f8f8cSSatish Balay Mat mat; 1946a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1947dfbe8321SBarry Smith PetscErrorCode ierr; 1948521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 1949387bc808SHong Zhang PetscScalar *array; 1950a30f8f8cSSatish Balay 1951a30f8f8cSSatish Balay PetscFunctionBegin; 1952a30f8f8cSSatish Balay *newmat = 0; 1953b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1954be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 19551d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1956e1b6402fSHong Zhang 195782327fa8SHong Zhang mat->factor = matin->factor; 1958273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 195982327fa8SHong Zhang mat->assembled = PETSC_TRUE; 19607fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 19617fff6886SHong Zhang 1962b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1963521d7252SBarry Smith mat->bs = matin->bs; 1964a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1965a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1966a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1967a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1968a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1969a30f8f8cSSatish Balay 1970a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1971a30f8f8cSSatish Balay a->rend = oldmat->rend; 1972a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1973a30f8f8cSSatish Balay a->cend = oldmat->cend; 1974a30f8f8cSSatish Balay a->size = oldmat->size; 1975a30f8f8cSSatish Balay a->rank = oldmat->rank; 1976a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1977a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1978a30f8f8cSSatish Balay a->rowindices = 0; 1979a30f8f8cSSatish Balay a->rowvalues = 0; 1980a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1981a30f8f8cSSatish Balay a->barray = 0; 1982a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1983a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1984a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1985a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay /* hash table stuff */ 1988a30f8f8cSSatish Balay a->ht = 0; 1989a30f8f8cSSatish Balay a->hd = 0; 1990a30f8f8cSSatish Balay a->ht_size = 0; 1991a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1992a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1993a30f8f8cSSatish Balay a->ht_total_ct = 0; 1994a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1995a30f8f8cSSatish Balay 19961302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 1997a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1998521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 1999a30f8f8cSSatish Balay if (oldmat->colmap) { 2000a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2001a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2002a30f8f8cSSatish Balay #else 20031302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 200452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20051302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2006a30f8f8cSSatish Balay #endif 2007a30f8f8cSSatish Balay } else a->colmap = 0; 2008387bc808SHong Zhang 2009a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20101302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 201152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20121302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2013a30f8f8cSSatish Balay } else a->garray = 0; 2014a30f8f8cSSatish Balay 2015a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 201652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2017a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 201852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 201982327fa8SHong Zhang 202082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 202152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 202282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 202352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2024387bc808SHong Zhang 2025387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 20261ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2027387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2028387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 20291ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 20301ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2031387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 20321ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 203352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 203452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 203552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 203652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 203752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2038387bc808SHong Zhang 2039387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2040387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2041387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 204252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 204382327fa8SHong Zhang 2044a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 204552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2046a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 204752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2048b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2049a30f8f8cSSatish Balay *newmat = mat; 2050a30f8f8cSSatish Balay PetscFunctionReturn(0); 2051a30f8f8cSSatish Balay } 2052a30f8f8cSSatish Balay 2053a30f8f8cSSatish Balay #include "petscsys.h" 2054a30f8f8cSSatish Balay 20554a2ae208SSatish Balay #undef __FUNCT__ 20564a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2057dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2058a30f8f8cSSatish Balay { 2059a30f8f8cSSatish Balay Mat A; 20606849ba73SBarry Smith PetscErrorCode ierr; 206113f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 206287828ca2SBarry Smith PetscScalar *vals,*buf; 2063a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2064a30f8f8cSSatish Balay MPI_Status status; 206513f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners; 206613f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 206713f74950SBarry Smith PetscInt *locrowlens,*procsnz = 0,jj,*mycols,*ibuf; 20681302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 20691302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 20701302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 207113f74950SBarry Smith int fd; 2072a30f8f8cSSatish Balay 2073a30f8f8cSSatish Balay PetscFunctionBegin; 2074b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2075a30f8f8cSSatish Balay 2076a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2077a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2078a30f8f8cSSatish Balay if (!rank) { 2079b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2080a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2081552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2082a30f8f8cSSatish Balay if (header[3] < 0) { 208329bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2084a30f8f8cSSatish Balay } 2085a30f8f8cSSatish Balay } 2086a30f8f8cSSatish Balay 2087a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2088a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2089a30f8f8cSSatish Balay 209029bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2091a30f8f8cSSatish Balay 2092a30f8f8cSSatish Balay /* 2093a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2094a30f8f8cSSatish Balay divisible by the blocksize 2095a30f8f8cSSatish Balay */ 2096a30f8f8cSSatish Balay Mbs = M/bs; 2097a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2098a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2099a30f8f8cSSatish Balay else Mbs++; 2100a30f8f8cSSatish Balay if (extra_rows &&!rank) { 210163ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr); 2102a30f8f8cSSatish Balay } 2103a30f8f8cSSatish Balay 2104a30f8f8cSSatish Balay /* determine ownership of all rows */ 2105a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2106a30f8f8cSSatish Balay m = mbs*bs; 2107a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2108a30f8f8cSSatish Balay browners = rowners + size + 1; 2109a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2110a30f8f8cSSatish Balay rowners[0] = 0; 2111a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2112a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2113a30f8f8cSSatish Balay rstart = rowners[rank]; 2114a30f8f8cSSatish Balay rend = rowners[rank+1]; 2115a30f8f8cSSatish Balay 2116a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 21171302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2118a30f8f8cSSatish Balay if (!rank) { 21191302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2120a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2121a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2122a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2123a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2124a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2125a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2126a30f8f8cSSatish Balay } else { 2127a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2128a30f8f8cSSatish Balay } 2129a30f8f8cSSatish Balay 21300222edb1SHong Zhang if (!rank) { /* procs[0] */ 2131a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 21321302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 21331302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2134a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2135a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2136a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2137a30f8f8cSSatish Balay } 2138a30f8f8cSSatish Balay } 2139a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2140a30f8f8cSSatish Balay 2141a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2142a30f8f8cSSatish Balay maxnz = 0; 2143a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2144a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2145a30f8f8cSSatish Balay } 21461302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2147a30f8f8cSSatish Balay 2148a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2149a30f8f8cSSatish Balay nz = procsnz[0]; 21501302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay mycols = ibuf; 2152a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2153a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2155a30f8f8cSSatish Balay 2156a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2157a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2158a30f8f8cSSatish Balay nz = procsnz[i]; 2159a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2160a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay } 2162a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2163a30f8f8cSSatish Balay if (size != 1) { 2164a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2165a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2167a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2168a30f8f8cSSatish Balay } 2169a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21700222edb1SHong Zhang } else { /* procs[i], i>0 */ 2171a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2172a30f8f8cSSatish Balay nz = 0; 2173a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2174a30f8f8cSSatish Balay nz += locrowlens[i]; 2175a30f8f8cSSatish Balay } 21761302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay mycols = ibuf; 2178a30f8f8cSSatish Balay /* receive message of column indices*/ 2179a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2180a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 218129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2182a30f8f8cSSatish Balay } 2183a30f8f8cSSatish Balay 2184a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 21851302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 21871302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 21881302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2189a30f8f8cSSatish Balay masked1 = mask + Mbs; 2190a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2191a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2192a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2193a30f8f8cSSatish Balay dcount = 0; 2194a30f8f8cSSatish Balay odcount = 0; 2195a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2196a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2197a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21980222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2199a30f8f8cSSatish Balay if (!mask[tmp]) { 2200a30f8f8cSSatish Balay mask[tmp] = 1; 22010222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22020222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2203a30f8f8cSSatish Balay } 2204a30f8f8cSSatish Balay } 2205a30f8f8cSSatish Balay rowcount++; 2206a30f8f8cSSatish Balay } 2207a30f8f8cSSatish Balay 22080222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22090222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2210a30f8f8cSSatish Balay 2211a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2212a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2213a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2214a30f8f8cSSatish Balay } 2215a30f8f8cSSatish Balay 2216a30f8f8cSSatish Balay /* create our matrix */ 221722191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 221822191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 221922191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2220273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay 2222a30f8f8cSSatish Balay if (!rank) { 222387828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2224a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2225a30f8f8cSSatish Balay nz = procsnz[0]; 2226a30f8f8cSSatish Balay vals = buf; 2227a30f8f8cSSatish Balay mycols = ibuf; 2228a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2229a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2231a30f8f8cSSatish Balay 2232a30f8f8cSSatish Balay /* insert into matrix */ 2233a30f8f8cSSatish Balay jj = rstart*bs; 2234a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22357e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2236a30f8f8cSSatish Balay mycols += locrowlens[i]; 2237a30f8f8cSSatish Balay vals += locrowlens[i]; 2238a30f8f8cSSatish Balay jj++; 2239a30f8f8cSSatish Balay } 22407e06b45fSHong Zhang 2241a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2242a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2243a30f8f8cSSatish Balay nz = procsnz[i]; 2244a30f8f8cSSatish Balay vals = buf; 2245a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2246a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2247a30f8f8cSSatish Balay } 2248a30f8f8cSSatish Balay /* the last proc */ 2249a30f8f8cSSatish Balay if (size != 1){ 2250a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2251a30f8f8cSSatish Balay vals = buf; 2252a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2253a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2254a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2255a30f8f8cSSatish Balay } 2256a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22577e06b45fSHong Zhang 2258a30f8f8cSSatish Balay } else { 2259a30f8f8cSSatish Balay /* receive numeric values */ 226087828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2261a30f8f8cSSatish Balay 2262a30f8f8cSSatish Balay /* receive message of values*/ 2263a30f8f8cSSatish Balay vals = buf; 2264a30f8f8cSSatish Balay mycols = ibuf; 2265a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 226729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2268a30f8f8cSSatish Balay 2269a30f8f8cSSatish Balay /* insert into matrix */ 2270a30f8f8cSSatish Balay jj = rstart*bs; 2271a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2272a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2273a30f8f8cSSatish Balay mycols += locrowlens[i]; 2274a30f8f8cSSatish Balay vals += locrowlens[i]; 2275a30f8f8cSSatish Balay jj++; 2276a30f8f8cSSatish Balay } 2277a30f8f8cSSatish Balay } 22787e06b45fSHong Zhang 2279a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2281a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2282a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2283a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2284a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2285a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2286a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 228722191285SKris Buschelman *newmat = A; 2288a30f8f8cSSatish Balay PetscFunctionReturn(0); 2289a30f8f8cSSatish Balay } 2290a30f8f8cSSatish Balay 22914a2ae208SSatish Balay #undef __FUNCT__ 22924a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2293dcf5cc72SBarry Smith /*XXXXX@ 2294a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2295a30f8f8cSSatish Balay 2296a30f8f8cSSatish Balay Input Parameters: 2297a30f8f8cSSatish Balay . mat - the matrix 2298a30f8f8cSSatish Balay . fact - factor 2299a30f8f8cSSatish Balay 2300a30f8f8cSSatish Balay Collective on Mat 2301a30f8f8cSSatish Balay 2302a30f8f8cSSatish Balay Level: advanced 2303a30f8f8cSSatish Balay 2304a30f8f8cSSatish Balay Notes: 2305a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2306a30f8f8cSSatish Balay 2307a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2308a30f8f8cSSatish Balay 2309a30f8f8cSSatish Balay .seealso: MatSetOption() 2310dcf5cc72SBarry Smith @XXXXX*/ 2311dcf5cc72SBarry Smith 231224d5174aSHong Zhang 23134a2ae208SSatish Balay #undef __FUNCT__ 23144a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2315dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 231624d5174aSHong Zhang { 231724d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2318f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2319ca54ac64SHong Zhang PetscReal atmp; 232087828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2321dfbe8321SBarry Smith PetscErrorCode ierr; 23221302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 23231302d50aSBarry Smith PetscMPIInt rank,size; 23241302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 232587828ca2SBarry Smith PetscScalar *va; 23268a1c53f2SBarry Smith MatScalar *ba; 2327f4c0e9e4SHong Zhang MPI_Status stat; 232824d5174aSHong Zhang 232924d5174aSHong Zhang PetscFunctionBegin; 2330d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 23311ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2332f4c0e9e4SHong Zhang 233356faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 233456faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2335f4c0e9e4SHong Zhang 2336521d7252SBarry Smith bs = A->bs; 2337f4c0e9e4SHong Zhang mbs = a->mbs; 2338f4c0e9e4SHong Zhang Mbs = a->Mbs; 2339f4c0e9e4SHong Zhang ba = b->a; 2340f4c0e9e4SHong Zhang bi = b->i; 2341f4c0e9e4SHong Zhang bj = b->j; 2342f4c0e9e4SHong Zhang 2343f4c0e9e4SHong Zhang /* find ownerships */ 2344f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2345f4c0e9e4SHong Zhang 2346f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 234782502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2348ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2349f4c0e9e4SHong Zhang 2350f4c0e9e4SHong Zhang /* row_max for B */ 2351b8475685SHong Zhang if (rank != size-1){ 2352f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2353f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2354f4c0e9e4SHong Zhang brow = bs*i; 2355f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2356f4c0e9e4SHong Zhang bcol = bs*(*bj); 2357f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2358ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 235904d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2360f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2361f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2362ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2363ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2364f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2365f4c0e9e4SHong Zhang } 2366f4c0e9e4SHong Zhang } 2367f4c0e9e4SHong Zhang bj++; 2368f4c0e9e4SHong Zhang } 2369f4c0e9e4SHong Zhang } 2370f4c0e9e4SHong Zhang 2371f4c0e9e4SHong Zhang /* send values to its owners */ 2372f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2373f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2374ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 237556faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2376ca54ac64SHong Zhang } 2377f4c0e9e4SHong Zhang } 2378f4c0e9e4SHong Zhang 2379f4c0e9e4SHong Zhang /* receive values */ 2380ca54ac64SHong Zhang if (rank){ 2381f4c0e9e4SHong Zhang rvalues = work; 2382ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2383f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 238456faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2385f4c0e9e4SHong Zhang /* process values */ 2386f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2387ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2388f4c0e9e4SHong Zhang } 2389f4c0e9e4SHong Zhang } 2390ca54ac64SHong Zhang } 2391f4c0e9e4SHong Zhang 23921ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2393ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 239424d5174aSHong Zhang PetscFunctionReturn(0); 239524d5174aSHong Zhang } 23962798e883SHong Zhang 23972798e883SHong Zhang #undef __FUNCT__ 23982798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 23991302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24002798e883SHong Zhang { 24012798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2402dfbe8321SBarry Smith PetscErrorCode ierr; 2403521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2404ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2405ffe4fb16SHong Zhang Vec bb1; 2406ffe4fb16SHong Zhang 2407ffe4fb16SHong Zhang PetscFunctionBegin; 240877431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2409ffe4fb16SHong Zhang if (bs > 1) 2410ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2411ffe4fb16SHong Zhang 2412ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2413ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2414ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2415ffe4fb16SHong Zhang its--; 2416ffe4fb16SHong Zhang } 2417ffe4fb16SHong Zhang 2418ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2419ffe4fb16SHong Zhang while (its--){ 2420ffe4fb16SHong Zhang 2421ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2422ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2423ffe4fb16SHong Zhang 2424ffe4fb16SHong Zhang /* copy xx into slvec0a */ 24251ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 24261ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2427ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24281ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2429ffe4fb16SHong Zhang 2430ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2431ffe4fb16SHong Zhang 2432ffe4fb16SHong Zhang /* copy bb into slvec1a */ 24331ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 24341ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2435ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24361ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2437ffe4fb16SHong Zhang 2438ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2439ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2440ffe4fb16SHong Zhang 2441ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 24421ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 24431ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2444ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2445ffe4fb16SHong Zhang 2446ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2447ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2448ffe4fb16SHong Zhang 2449ffe4fb16SHong Zhang /* local diagonal sweep */ 2450ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2451ffe4fb16SHong Zhang } 2452ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2453ffe4fb16SHong Zhang } else { 2454ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2455ffe4fb16SHong Zhang } 2456ffe4fb16SHong Zhang PetscFunctionReturn(0); 2457ffe4fb16SHong Zhang } 2458ffe4fb16SHong Zhang 2459ffe4fb16SHong Zhang #undef __FUNCT__ 2460ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 24611302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2462ffe4fb16SHong Zhang { 2463ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2464dfbe8321SBarry Smith PetscErrorCode ierr; 2465d05c616dSSatish Balay PetscScalar mone=-1.0; 24662798e883SHong Zhang Vec lvec1,bb1; 24672798e883SHong Zhang 24682798e883SHong Zhang PetscFunctionBegin; 246977431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2470521d7252SBarry Smith if (matin->bs > 1) 24712798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24722798e883SHong Zhang 2473c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24742798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2475bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 24762798e883SHong Zhang its--; 24772798e883SHong Zhang } 24782798e883SHong Zhang 24792798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24802798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24812798e883SHong Zhang while (its--){ 24822798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24832798e883SHong Zhang 24842798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 24852798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 24862798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 24872798e883SHong Zhang 24882798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24892798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 24902798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24912798e883SHong Zhang 24922798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 24932798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 24942798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 24952798e883SHong Zhang 24962798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24972798e883SHong Zhang 2498c14dc6b6SHong Zhang /* diagonal sweep */ 2499bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25002798e883SHong Zhang } 25012798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25022798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2503c14dc6b6SHong Zhang } else { 2504c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2505c14dc6b6SHong Zhang } 25062798e883SHong Zhang PetscFunctionReturn(0); 25072798e883SHong Zhang } 25082798e883SHong Zhang 2509