xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision be1d678a52e6eff2808b2fa31ae986cdbf03c9fe)
1*be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
51dfbe8321SBarry Smith   PetscErrorCode ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
66dfbe8321SBarry Smith   PetscErrorCode ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay 
76a30f8f8cSSatish Balay #define CHUNKSIZE  10
77a30f8f8cSSatish Balay 
78a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
79a30f8f8cSSatish Balay { \
80a30f8f8cSSatish Balay  \
81a30f8f8cSSatish Balay     brow = row/bs;  \
82a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
83a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
84a30f8f8cSSatish Balay       bcol = col/bs; \
85a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
86a30f8f8cSSatish Balay       low = 0; high = nrow; \
87a30f8f8cSSatish Balay       while (high-low > 3) { \
88a30f8f8cSSatish Balay         t = (low+high)/2; \
89a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
90a30f8f8cSSatish Balay         else              low  = t; \
91a30f8f8cSSatish Balay       } \
92a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
93a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
94a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
95a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
96a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
97a30f8f8cSSatish Balay           else                    *bap  = value;  \
98a30f8f8cSSatish Balay           goto a_noinsert; \
99a30f8f8cSSatish Balay         } \
100a30f8f8cSSatish Balay       } \
101a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
10277431f27SBarry Smith       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
103a30f8f8cSSatish Balay       if (nrow >= rmax) { \
104a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1051302d50aSBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
106a30f8f8cSSatish Balay         MatScalar *new_a; \
107a30f8f8cSSatish Balay  \
10877431f27SBarry Smith         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
109a30f8f8cSSatish Balay  \
110a30f8f8cSSatish Balay         /* malloc new storage space */ \
1111302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \
11282502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1131302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
114a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
115a30f8f8cSSatish Balay  \
116a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
117a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
118a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
1191302d50aSBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
120a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
1211302d50aSBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
122a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
12387828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
125a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
126a30f8f8cSSatish Balay         /* free up old matrix storage */ \
127a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
128a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
129a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
130a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
131a30f8f8cSSatish Balay         } \
132a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
133a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
134a30f8f8cSSatish Balay  \
135a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
136a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
13752e6d16bSBarry Smith         ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \
1386c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE; \
139a30f8f8cSSatish Balay         a->reallocs++; \
1406c6c5352SBarry Smith         a->nz++; \
141a30f8f8cSSatish Balay       } \
142a30f8f8cSSatish Balay       N = nrow++ - 1;  \
143a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
144a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
145a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
146a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
149a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
150a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
151a30f8f8cSSatish Balay       a_noinsert:; \
152a30f8f8cSSatish Balay     ailen[brow] = nrow; \
153a30f8f8cSSatish Balay }
154a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
155a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
156a30f8f8cSSatish Balay { \
157a30f8f8cSSatish Balay     brow = row/bs;  \
158a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
159a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
160a30f8f8cSSatish Balay       bcol = col/bs; \
161a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
162a30f8f8cSSatish Balay       low = 0; high = nrow; \
163a30f8f8cSSatish Balay       while (high-low > 3) { \
164a30f8f8cSSatish Balay         t = (low+high)/2; \
165a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
166a30f8f8cSSatish Balay         else              low  = t; \
167a30f8f8cSSatish Balay       } \
168a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
169a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
170a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
171a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
172a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
173a30f8f8cSSatish Balay           else                    *bap  = value;  \
174a30f8f8cSSatish Balay           goto b_noinsert; \
175a30f8f8cSSatish Balay         } \
176a30f8f8cSSatish Balay       } \
177a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
17877431f27SBarry Smith       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
179a30f8f8cSSatish Balay       if (nrow >= rmax) { \
180a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1811302d50aSBarry Smith         PetscInt  new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
182a30f8f8cSSatish Balay         MatScalar *new_a; \
183a30f8f8cSSatish Balay  \
18477431f27SBarry Smith         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
185a30f8f8cSSatish Balay  \
186a30f8f8cSSatish Balay         /* malloc new storage space */ \
1871302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \
18882502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1891302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
190a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
191a30f8f8cSSatish Balay  \
192a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
193a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
194a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
1951302d50aSBarry Smith         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
196a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
1971302d50aSBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
198a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
199a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
200a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
201a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
202a30f8f8cSSatish Balay         /* free up old matrix storage */ \
203a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
204a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
205a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
206a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
207a30f8f8cSSatish Balay         } \
208a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
209a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
210a30f8f8cSSatish Balay  \
211a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
212a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
21352e6d16bSBarry Smith         ierr = PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \
214a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
215a30f8f8cSSatish Balay         b->reallocs++; \
216a30f8f8cSSatish Balay         b->nz++; \
217a30f8f8cSSatish Balay       } \
218a30f8f8cSSatish Balay       N = nrow++ - 1;  \
219a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
220a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
221a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
222a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
223a30f8f8cSSatish Balay       } \
224a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
225a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
226a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
227a30f8f8cSSatish Balay       b_noinsert:; \
228a30f8f8cSSatish Balay     bilen[brow] = nrow; \
229a30f8f8cSSatish Balay }
230a30f8f8cSSatish Balay #endif
231a30f8f8cSSatish Balay 
232a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2334a2ae208SSatish Balay #undef __FUNCT__
2344a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
2351302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
236a30f8f8cSSatish Balay {
237a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
238dfbe8321SBarry Smith   PetscErrorCode ierr;
2391302d50aSBarry Smith   PetscInt       i,N = m*n;
240a30f8f8cSSatish Balay   MatScalar      *vsingle;
241a30f8f8cSSatish Balay 
242a30f8f8cSSatish Balay   PetscFunctionBegin;
243a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
244a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
24582502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
246a30f8f8cSSatish Balay     b->setvalueslen  = N;
247a30f8f8cSSatish Balay   }
248a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
249a30f8f8cSSatish Balay 
250a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
251a30f8f8cSSatish Balay     vsingle[i] = v[i];
252a30f8f8cSSatish Balay   }
253a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
254a30f8f8cSSatish Balay   PetscFunctionReturn(0);
255a30f8f8cSSatish Balay }
256a30f8f8cSSatish Balay 
2574a2ae208SSatish Balay #undef __FUNCT__
2584a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
2591302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
260a30f8f8cSSatish Balay {
261a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
262dfbe8321SBarry Smith   PetscErrorCode ierr;
2631302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
264a30f8f8cSSatish Balay   MatScalar      *vsingle;
265a30f8f8cSSatish Balay 
266a30f8f8cSSatish Balay   PetscFunctionBegin;
267a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
268a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
26982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
270a30f8f8cSSatish Balay     b->setvalueslen  = N;
271a30f8f8cSSatish Balay   }
272a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
273a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
274a30f8f8cSSatish Balay     vsingle[i] = v[i];
275a30f8f8cSSatish Balay   }
276a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
277a30f8f8cSSatish Balay   PetscFunctionReturn(0);
278a30f8f8cSSatish Balay }
279a30f8f8cSSatish Balay #endif
280a30f8f8cSSatish Balay 
281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
282a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
283a30f8f8cSSatish Balay */
2844a2ae208SSatish Balay #undef __FUNCT__
285e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
2861302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
287a30f8f8cSSatish Balay {
288a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
289a30f8f8cSSatish Balay   MatScalar      value;
290b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
291dfbe8321SBarry Smith   PetscErrorCode ierr;
2921302d50aSBarry Smith   PetscInt       i,j,row,col;
2931302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
2941302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
295521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
296a30f8f8cSSatish Balay 
297a30f8f8cSSatish Balay   /* Some Variables required in the macro */
298a30f8f8cSSatish Balay   Mat            A = baij->A;
299a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
3001302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
301a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
302a30f8f8cSSatish Balay 
303a30f8f8cSSatish Balay   Mat            B = baij->B;
304a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
3051302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
306a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
307a30f8f8cSSatish Balay 
3081302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
3091302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
310a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
311a30f8f8cSSatish Balay 
312a30f8f8cSSatish Balay   /* for stash */
3131302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
314f65c83cfSHong Zhang   MatScalar     *v_loc=0;
315a30f8f8cSSatish Balay 
316a30f8f8cSSatish Balay   PetscFunctionBegin;
317a30f8f8cSSatish Balay 
318a30f8f8cSSatish Balay   if(!baij->donotstash){
3191302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
32082502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
321a30f8f8cSSatish Balay   }
322a30f8f8cSSatish Balay 
323a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
324a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3252515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
32677431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
327a30f8f8cSSatish Balay #endif
328a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
329a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
330a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
331f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
332a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
333a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
334a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
335a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
336a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
337a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
338a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
339a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
34177431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
342a30f8f8cSSatish Balay #endif
343a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
344a30f8f8cSSatish Balay           if (mat->was_assembled) {
345a30f8f8cSSatish Balay             if (!baij->colmap) {
346653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
347a30f8f8cSSatish Balay             }
348a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
349a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
35071730473SSatish Balay             col  = col - 1;
351a30f8f8cSSatish Balay #else
35271730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
353a30f8f8cSSatish Balay #endif
354a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
355a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
356a30f8f8cSSatish Balay               col =  in[j];
357a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
358a30f8f8cSSatish Balay               B = baij->B;
359a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
360a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
361a30f8f8cSSatish Balay               ba=b->a;
36271730473SSatish Balay             } else col += in[j]%bs;
363a30f8f8cSSatish Balay           } else col = in[j];
364a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
365a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
366a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
367a30f8f8cSSatish Balay         }
368a30f8f8cSSatish Balay       }
369a30f8f8cSSatish Balay     } else {  /* off processor entry */
370a30f8f8cSSatish Balay       if (!baij->donotstash) {
371a30f8f8cSSatish Balay         n_loc = 0;
372a30f8f8cSSatish Balay         for (j=0; j<n; j++){
373f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
374a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
375a30f8f8cSSatish Balay           if (roworiented) {
376a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
377a30f8f8cSSatish Balay           } else {
378a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
379a30f8f8cSSatish Balay           }
380a30f8f8cSSatish Balay           n_loc++;
381a30f8f8cSSatish Balay         }
382a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
383a30f8f8cSSatish Balay       }
384a30f8f8cSSatish Balay     }
385a30f8f8cSSatish Balay   }
386a30f8f8cSSatish Balay 
387a30f8f8cSSatish Balay   if(!baij->donotstash){
388a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
389a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
390a30f8f8cSSatish Balay   }
391a30f8f8cSSatish Balay   PetscFunctionReturn(0);
392a30f8f8cSSatish Balay }
393a30f8f8cSSatish Balay 
3944a2ae208SSatish Balay #undef __FUNCT__
395e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3961302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
397a30f8f8cSSatish Balay {
3980880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
399f15d580aSBarry Smith   const MatScalar *value;
400f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4010880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
402dfbe8321SBarry Smith   PetscErrorCode  ierr;
4031302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
4041302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
405521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
4060880e062SHong Zhang 
407a30f8f8cSSatish Balay   PetscFunctionBegin;
4080880e062SHong Zhang   if(!barray) {
4090880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4100880e062SHong Zhang     baij->barray = barray;
4110880e062SHong Zhang   }
4120880e062SHong Zhang 
4130880e062SHong Zhang   if (roworiented) {
4140880e062SHong Zhang     stepval = (n-1)*bs;
4150880e062SHong Zhang   } else {
4160880e062SHong Zhang     stepval = (m-1)*bs;
4170880e062SHong Zhang   }
4180880e062SHong Zhang   for (i=0; i<m; i++) {
4190880e062SHong Zhang     if (im[i] < 0) continue;
4202515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
42177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
4220880e062SHong Zhang #endif
4230880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4240880e062SHong Zhang       row = im[i] - rstart;
4250880e062SHong Zhang       for (j=0; j<n; j++) {
4260880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4270880e062SHong Zhang         if ((roworiented) && (n == 1)) {
428f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4290880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
430f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4310880e062SHong Zhang         } else { /* Here a copy is required */
4320880e062SHong Zhang           if (roworiented) {
4330880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4340880e062SHong Zhang           } else {
4350880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4360880e062SHong Zhang           }
4370880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4380880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4390880e062SHong Zhang               *barray++  = *value++;
4400880e062SHong Zhang             }
4410880e062SHong Zhang           }
4420880e062SHong Zhang           barray -=bs2;
4430880e062SHong Zhang         }
4440880e062SHong Zhang 
4450880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4460880e062SHong Zhang           col  = in[j] - cstart;
4470880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4480880e062SHong Zhang         }
4490880e062SHong Zhang         else if (in[j] < 0) continue;
4502515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
45177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
4520880e062SHong Zhang #endif
4530880e062SHong Zhang         else {
4540880e062SHong Zhang           if (mat->was_assembled) {
4550880e062SHong Zhang             if (!baij->colmap) {
456653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
4570880e062SHong Zhang             }
4580880e062SHong Zhang 
4592515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
4600880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4611302d50aSBarry Smith             { PetscInt data;
4620880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4630880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4640880e062SHong Zhang             }
4650880e062SHong Zhang #else
4660880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4670880e062SHong Zhang #endif
4680880e062SHong Zhang #endif
4690880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4700880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4710880e062SHong Zhang             col  = (col - 1)/bs;
4720880e062SHong Zhang #else
4730880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4740880e062SHong Zhang #endif
4750880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4760880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4770880e062SHong Zhang               col =  in[j];
4780880e062SHong Zhang             }
4790880e062SHong Zhang           }
4800880e062SHong Zhang           else col = in[j];
481e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4820880e062SHong Zhang         }
4830880e062SHong Zhang       }
4840880e062SHong Zhang     } else {
4850880e062SHong Zhang       if (!baij->donotstash) {
4860880e062SHong Zhang         if (roworiented) {
4870880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4880880e062SHong Zhang         } else {
4890880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4900880e062SHong Zhang         }
4910880e062SHong Zhang       }
4920880e062SHong Zhang     }
4930880e062SHong Zhang   }
4940880e062SHong Zhang   PetscFunctionReturn(0);
495a30f8f8cSSatish Balay }
496a30f8f8cSSatish Balay 
4974a2ae208SSatish Balay #undef __FUNCT__
4984a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4991302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
500a30f8f8cSSatish Balay {
501f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5026849ba73SBarry Smith   PetscErrorCode ierr;
503521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
5041302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
505a30f8f8cSSatish Balay 
506a30f8f8cSSatish Balay   PetscFunctionBegin;
507a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
50877431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
50977431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
510a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
511a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
512a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
51377431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
51477431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
515a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
516a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
517c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
518a30f8f8cSSatish Balay         } else {
519a30f8f8cSSatish Balay           if (!baij->colmap) {
520653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
521a30f8f8cSSatish Balay           }
522a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
523a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
524a30f8f8cSSatish Balay           data --;
525a30f8f8cSSatish Balay #else
526a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
527a30f8f8cSSatish Balay #endif
528a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
529a30f8f8cSSatish Balay           else {
530a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
531e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
532a30f8f8cSSatish Balay           }
533a30f8f8cSSatish Balay         }
534a30f8f8cSSatish Balay       }
535a30f8f8cSSatish Balay     } else {
53629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
537a30f8f8cSSatish Balay     }
538a30f8f8cSSatish Balay   }
539a30f8f8cSSatish Balay  PetscFunctionReturn(0);
540a30f8f8cSSatish Balay }
541a30f8f8cSSatish Balay 
5424a2ae208SSatish Balay #undef __FUNCT__
5434a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
544dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
545a30f8f8cSSatish Balay {
546a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
547dfbe8321SBarry Smith   PetscErrorCode ierr;
548a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
549a30f8f8cSSatish Balay 
550a30f8f8cSSatish Balay   PetscFunctionBegin;
551a30f8f8cSSatish Balay   if (baij->size == 1) {
552a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
553a30f8f8cSSatish Balay   } else {
554a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
555f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
556a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
557a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
558a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
559a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
560d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
561a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
562a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
5630b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
5640b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
5650b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
5660b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
5670b8dc8d2SHong Zhang       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstart,nz;
5680b8dc8d2SHong Zhang       PetscInt     brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs;
5690b8dc8d2SHong Zhang       MatScalar    *v;
5700b8dc8d2SHong Zhang 
5710b8dc8d2SHong Zhang       ierr  = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
5720b8dc8d2SHong Zhang       rsum2 = rsum + mat->N;
5730b8dc8d2SHong Zhang       ierr  = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
5740b8dc8d2SHong Zhang       /* Amat */
5750b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5760b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5770b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5780b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5790b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5800b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5810b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5820b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5830b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5840b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5850b8dc8d2SHong Zhang               /* non-diagonal block */
5860b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5870b8dc8d2SHong Zhang             }
5880b8dc8d2SHong Zhang           }
5890b8dc8d2SHong Zhang         }
5900b8dc8d2SHong Zhang       }
5910b8dc8d2SHong Zhang       /* Bmat */
5920b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5930b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5940b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5950b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5960b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5970b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5980b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5990b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
6000b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
6010b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6020b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6030b8dc8d2SHong Zhang             }
6040b8dc8d2SHong Zhang           }
6050b8dc8d2SHong Zhang         }
6060b8dc8d2SHong Zhang       }
6070b8dc8d2SHong Zhang       ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
6080b8dc8d2SHong Zhang       *norm = 0.0;
6090b8dc8d2SHong Zhang       for (col=0; col<mat->N; col++) {
6100b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6110b8dc8d2SHong Zhang       }
6120b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
613a30f8f8cSSatish Balay     } else {
61429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
615a30f8f8cSSatish Balay     }
616a30f8f8cSSatish Balay   }
617a30f8f8cSSatish Balay   PetscFunctionReturn(0);
618a30f8f8cSSatish Balay }
619a30f8f8cSSatish Balay 
6204a2ae208SSatish Balay #undef __FUNCT__
6214a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
622dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
623a30f8f8cSSatish Balay {
624a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
625dfbe8321SBarry Smith   PetscErrorCode ierr;
6261302d50aSBarry Smith   PetscInt       nstash,reallocs;
627a30f8f8cSSatish Balay   InsertMode     addv;
628a30f8f8cSSatish Balay 
629a30f8f8cSSatish Balay   PetscFunctionBegin;
630a30f8f8cSSatish Balay   if (baij->donotstash) {
631a30f8f8cSSatish Balay     PetscFunctionReturn(0);
632a30f8f8cSSatish Balay   }
633a30f8f8cSSatish Balay 
634a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
635a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
636a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
63729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
638a30f8f8cSSatish Balay   }
639a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
640a30f8f8cSSatish Balay 
641a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
642a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
643a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
64463ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
645a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
64663ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
647a30f8f8cSSatish Balay   PetscFunctionReturn(0);
648a30f8f8cSSatish Balay }
649a30f8f8cSSatish Balay 
6504a2ae208SSatish Balay #undef __FUNCT__
6514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
652dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
653a30f8f8cSSatish Balay {
654a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
655a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
656a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
6576849ba73SBarry Smith   PetscErrorCode ierr;
65813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
6591302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
66013f74950SBarry Smith   PetscMPIInt    n;
661a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
662a30f8f8cSSatish Balay   MatScalar      *val;
663a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   PetscFunctionBegin;
666a30f8f8cSSatish Balay 
667a30f8f8cSSatish Balay   if (!baij->donotstash) {
668a30f8f8cSSatish Balay     while (1) {
669a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
670a30f8f8cSSatish Balay       if (!flg) break;
671a30f8f8cSSatish Balay 
672a30f8f8cSSatish Balay       for (i=0; i<n;) {
673a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
674a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
675a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
676a30f8f8cSSatish Balay         else       ncols = n-i;
677a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
678a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
679a30f8f8cSSatish Balay         i = j;
680a30f8f8cSSatish Balay       }
681a30f8f8cSSatish Balay     }
682a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
683a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
684a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
685a30f8f8cSSatish Balay        restore the original flags */
686a30f8f8cSSatish Balay     r1 = baij->roworiented;
687a30f8f8cSSatish Balay     r2 = a->roworiented;
688a30f8f8cSSatish Balay     r3 = b->roworiented;
689a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
690a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
691a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
692a30f8f8cSSatish Balay     while (1) {
693a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
694a30f8f8cSSatish Balay       if (!flg) break;
695a30f8f8cSSatish Balay 
696a30f8f8cSSatish Balay       for (i=0; i<n;) {
697a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
698a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
699a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
700a30f8f8cSSatish Balay         else       ncols = n-i;
701a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
702a30f8f8cSSatish Balay         i = j;
703a30f8f8cSSatish Balay       }
704a30f8f8cSSatish Balay     }
705a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     baij->roworiented = r1;
707a30f8f8cSSatish Balay     a->roworiented    = r2;
708a30f8f8cSSatish Balay     b->roworiented    = r3;
709a30f8f8cSSatish Balay   }
710a30f8f8cSSatish Balay 
711a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
712a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
713a30f8f8cSSatish Balay 
714a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
715a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
716a30f8f8cSSatish Balay   /*
717a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
718a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
719a30f8f8cSSatish Balay   */
720a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
721a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
722a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
723c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
724a30f8f8cSSatish Balay     }
725a30f8f8cSSatish Balay   }
726a30f8f8cSSatish Balay 
727a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
72840781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
729a30f8f8cSSatish Balay   }
7304eb6d288SHong Zhang   b->compressedrow.use = PETSC_TRUE;
731a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
732a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
733a30f8f8cSSatish Balay 
734a30f8f8cSSatish Balay   if (baij->rowvalues) {
735a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
736a30f8f8cSSatish Balay     baij->rowvalues = 0;
737a30f8f8cSSatish Balay   }
7385222a1afSHong Zhang 
739a30f8f8cSSatish Balay   PetscFunctionReturn(0);
740a30f8f8cSSatish Balay }
741a30f8f8cSSatish Balay 
7424a2ae208SSatish Balay #undef __FUNCT__
7434a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7446849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
745a30f8f8cSSatish Balay {
746a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
747dfbe8321SBarry Smith   PetscErrorCode    ierr;
748521d7252SBarry Smith   PetscInt          bs = mat->bs;
7491302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
75032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
751b0a32e0cSBarry Smith   PetscViewer       sviewer;
752f3ef73ceSBarry Smith   PetscViewerFormat format;
753a30f8f8cSSatish Balay 
754a30f8f8cSSatish Balay   PetscFunctionBegin;
75532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
756fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
75732077d6dSBarry Smith   if (iascii) {
758b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
759456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
760a30f8f8cSSatish Balay       MatInfo info;
761a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
762a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
76377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
76477431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
765521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
766a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
76777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
768a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
76977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
770b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
771a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
772a30f8f8cSSatish Balay       PetscFunctionReturn(0);
773fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
77477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
775a30f8f8cSSatish Balay       PetscFunctionReturn(0);
776a30f8f8cSSatish Balay     }
777a30f8f8cSSatish Balay   }
778a30f8f8cSSatish Balay 
779a30f8f8cSSatish Balay   if (isdraw) {
780b0a32e0cSBarry Smith     PetscDraw       draw;
781a30f8f8cSSatish Balay     PetscTruth isnull;
782b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
783b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
784a30f8f8cSSatish Balay   }
785a30f8f8cSSatish Balay 
786a30f8f8cSSatish Balay   if (size == 1) {
787e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
788a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
789a30f8f8cSSatish Balay   } else {
790a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
791a30f8f8cSSatish Balay     Mat         A;
79265d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
79365d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
7941302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
795a30f8f8cSSatish Balay     MatScalar   *a;
796a30f8f8cSSatish Balay 
797f204ca49SKris Buschelman     /* Should this be the same type as mat? */
798a30f8f8cSSatish Balay     if (!rank) {
799f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
800a30f8f8cSSatish Balay     } else {
801f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
802a30f8f8cSSatish Balay     }
803f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
804521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
80552e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
806a30f8f8cSSatish Balay 
807a30f8f8cSSatish Balay     /* copy over the A part */
80865d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
809a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
8101302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
811a30f8f8cSSatish Balay 
812a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
813a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
814a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
815a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
816a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
817a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
818a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
819a30f8f8cSSatish Balay           col++; a += bs;
820a30f8f8cSSatish Balay         }
821a30f8f8cSSatish Balay       }
822a30f8f8cSSatish Balay     }
823a30f8f8cSSatish Balay     /* copy over the B part */
82465d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
82565d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
826a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
827a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
828a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
829a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
830a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
831a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
832a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
833a30f8f8cSSatish Balay           col++; a += bs;
834a30f8f8cSSatish Balay         }
835a30f8f8cSSatish Balay       }
836a30f8f8cSSatish Balay     }
837a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
838a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
839a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
840a30f8f8cSSatish Balay     /*
841a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
842b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
843a30f8f8cSSatish Balay     */
844b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
84565d70643SHong Zhang     if (!rank) {
846e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
847a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
848a30f8f8cSSatish Balay     }
849b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
850a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
851a30f8f8cSSatish Balay   }
852a30f8f8cSSatish Balay   PetscFunctionReturn(0);
853a30f8f8cSSatish Balay }
854a30f8f8cSSatish Balay 
8554a2ae208SSatish Balay #undef __FUNCT__
8564a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
857dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
858a30f8f8cSSatish Balay {
859dfbe8321SBarry Smith   PetscErrorCode ierr;
86032077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
861a30f8f8cSSatish Balay 
862a30f8f8cSSatish Balay   PetscFunctionBegin;
86332077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
864fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
865b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
866fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
86732077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
868a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
869a30f8f8cSSatish Balay   } else {
8701302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
871a30f8f8cSSatish Balay   }
872a30f8f8cSSatish Balay   PetscFunctionReturn(0);
873a30f8f8cSSatish Balay }
874a30f8f8cSSatish Balay 
8754a2ae208SSatish Balay #undef __FUNCT__
8764a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
877dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
878a30f8f8cSSatish Balay {
879a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
880dfbe8321SBarry Smith   PetscErrorCode ierr;
881a30f8f8cSSatish Balay 
882a30f8f8cSSatish Balay   PetscFunctionBegin;
883a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
88477431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
885a30f8f8cSSatish Balay #endif
886a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
887a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
888a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
889a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
890a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
891a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
892a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
893a30f8f8cSSatish Balay #else
894a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
895a30f8f8cSSatish Balay #endif
896a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
897a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
898a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
89940781036SHong Zhang   if (baij->slvec0) {
90040781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
90140781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
90240781036SHong Zhang   }
90340781036SHong Zhang   if (baij->slvec1) {
90440781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
90540781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
90640781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
90740781036SHong Zhang   }
90840781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
909a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
910a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
911a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
912a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
913a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
914a30f8f8cSSatish Balay #endif
915a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
916901853e0SKris Buschelman 
917901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
918901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
919901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
920901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
921a30f8f8cSSatish Balay   PetscFunctionReturn(0);
922a30f8f8cSSatish Balay }
923a30f8f8cSSatish Balay 
9244a2ae208SSatish Balay #undef __FUNCT__
925a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
926dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
927a9d4b620SHong Zhang {
928a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
929dfbe8321SBarry Smith   PetscErrorCode ierr;
930521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
931a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
932a9d4b620SHong Zhang 
933a9d4b620SHong Zhang   PetscFunctionBegin;
934a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
935a9d4b620SHong Zhang   if (nt != A->n) {
936a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
937a9d4b620SHong Zhang   }
938a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
939a9d4b620SHong Zhang   if (nt != A->m) {
940a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
941a9d4b620SHong Zhang   }
942a9d4b620SHong Zhang 
943a9d4b620SHong Zhang   /* diagonal part */
944a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
945a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
946a9d4b620SHong Zhang 
947a9d4b620SHong Zhang   /* subdiagonal part */
948a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
949a9d4b620SHong Zhang 
950a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9511ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9521ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
953a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9541ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
955a9d4b620SHong Zhang 
956a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9571ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
958a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
959a9d4b620SHong Zhang 
960a9d4b620SHong Zhang   /* supperdiagonal part */
961a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
962a9d4b620SHong Zhang 
963a9d4b620SHong Zhang   PetscFunctionReturn(0);
964a9d4b620SHong Zhang }
965a9d4b620SHong Zhang 
966a9d4b620SHong Zhang #undef __FUNCT__
96740781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
968dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
969a30f8f8cSSatish Balay {
970a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
971dfbe8321SBarry Smith   PetscErrorCode ierr;
9721302d50aSBarry Smith   PetscInt       nt;
973a30f8f8cSSatish Balay 
974a30f8f8cSSatish Balay   PetscFunctionBegin;
975a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
976b5df2d14SHong Zhang   if (nt != A->n) {
97729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
978a30f8f8cSSatish Balay   }
979a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
980b5df2d14SHong Zhang   if (nt != A->m) {
98129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
982a30f8f8cSSatish Balay   }
98365d70643SHong Zhang 
984b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
985b941877fSHong Zhang   /* do diagonal part */
986b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
987b941877fSHong Zhang   /* do supperdiagonal part */
988b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
989b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
990b941877fSHong Zhang   /* do subdiagonal part */
991b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
992b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
993b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
99465d70643SHong Zhang 
995a30f8f8cSSatish Balay   PetscFunctionReturn(0);
996a30f8f8cSSatish Balay }
997a30f8f8cSSatish Balay 
9984a2ae208SSatish Balay #undef __FUNCT__
9994a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1000dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1001a30f8f8cSSatish Balay {
1002de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1003dfbe8321SBarry Smith   PetscErrorCode ierr;
1004521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
1005a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
1006a9d4b620SHong Zhang 
1007a9d4b620SHong Zhang   PetscFunctionBegin;
1008a9d4b620SHong Zhang   /*
100956faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
101056faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1011a9d4b620SHong Zhang   */
1012a9d4b620SHong Zhang   /* diagonal part */
1013a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1014a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1015a9d4b620SHong Zhang 
1016a9d4b620SHong Zhang   /* subdiagonal part */
1017a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1018a9d4b620SHong Zhang 
1019a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10201ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10211ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1022a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
10231ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1024a9d4b620SHong Zhang 
1025a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
10261ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1027a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1028a9d4b620SHong Zhang 
1029a9d4b620SHong Zhang   /* supperdiagonal part */
1030a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1031a9d4b620SHong Zhang 
1032a9d4b620SHong Zhang   PetscFunctionReturn(0);
1033a9d4b620SHong Zhang }
1034a9d4b620SHong Zhang 
1035a9d4b620SHong Zhang #undef __FUNCT__
1036a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1037dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1038a9d4b620SHong Zhang {
1039a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1040dfbe8321SBarry Smith   PetscErrorCode ierr;
1041a30f8f8cSSatish Balay 
1042a30f8f8cSSatish Balay   PetscFunctionBegin;
1043b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1044b941877fSHong Zhang   /* do diagonal part */
1045b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1046b941877fSHong Zhang   /* do supperdiagonal part */
1047b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1048de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1049de8b6608SHong Zhang 
1050b941877fSHong Zhang   /* do subdiagonal part */
1051a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1052a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1053a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1054aa482183SHong Zhang 
1055a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1056a30f8f8cSSatish Balay }
1057a30f8f8cSSatish Balay 
10584a2ae208SSatish Balay #undef __FUNCT__
10594a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1060dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1061a30f8f8cSSatish Balay {
1062dfbe8321SBarry Smith   PetscErrorCode ierr;
10635a7c0312SHong Zhang 
1064a30f8f8cSSatish Balay   PetscFunctionBegin;
10655a7c0312SHong Zhang   ierr = MatMult(A,xx,yy);CHKERRQ(ierr);
10665a7c0312SHong Zhang   PetscFunctionReturn(0);
1067a30f8f8cSSatish Balay }
1068a30f8f8cSSatish Balay 
10694a2ae208SSatish Balay #undef __FUNCT__
10704a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1071dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1072a30f8f8cSSatish Balay {
1073dfbe8321SBarry Smith   PetscErrorCode ierr;
10745a7c0312SHong Zhang 
1075a30f8f8cSSatish Balay   PetscFunctionBegin;
10765a7c0312SHong Zhang   ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr);
10775a7c0312SHong Zhang   PetscFunctionReturn(0);
1078a30f8f8cSSatish Balay }
1079a30f8f8cSSatish Balay 
1080a30f8f8cSSatish Balay /*
1081a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1082a30f8f8cSSatish Balay    diagonal block
1083a30f8f8cSSatish Balay */
10844a2ae208SSatish Balay #undef __FUNCT__
10854a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1086dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1087a30f8f8cSSatish Balay {
1088a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1089dfbe8321SBarry Smith   PetscErrorCode ierr;
1090a30f8f8cSSatish Balay 
1091a30f8f8cSSatish Balay   PetscFunctionBegin;
109229bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1093a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1094a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1095a30f8f8cSSatish Balay }
1096a30f8f8cSSatish Balay 
10974a2ae208SSatish Balay #undef __FUNCT__
10984a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1099dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1100a30f8f8cSSatish Balay {
1101a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1102dfbe8321SBarry Smith   PetscErrorCode ierr;
1103a30f8f8cSSatish Balay 
1104a30f8f8cSSatish Balay   PetscFunctionBegin;
1105a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1106a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1107a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1108a30f8f8cSSatish Balay }
1109a30f8f8cSSatish Balay 
11104a2ae208SSatish Balay #undef __FUNCT__
11114a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11121302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1113a30f8f8cSSatish Balay {
1114a30f8f8cSSatish Balay   PetscFunctionBegin;
111580e57f9fSHong Zhang   SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format");
1116a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1117a30f8f8cSSatish Balay }
1118a30f8f8cSSatish Balay 
11194a2ae208SSatish Balay #undef __FUNCT__
11204a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11211302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1122a30f8f8cSSatish Balay {
1123a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1124a30f8f8cSSatish Balay 
1125a30f8f8cSSatish Balay   PetscFunctionBegin;
1126abc0a331SBarry Smith   if (!baij->getrowactive) {
1127abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1128a30f8f8cSSatish Balay   }
1129a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1130a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1131a30f8f8cSSatish Balay }
1132a30f8f8cSSatish Balay 
11334a2ae208SSatish Balay #undef __FUNCT__
11344a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1135dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1136a30f8f8cSSatish Balay {
1137a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1138dfbe8321SBarry Smith   PetscErrorCode ierr;
1139a30f8f8cSSatish Balay 
1140a30f8f8cSSatish Balay   PetscFunctionBegin;
1141a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1142a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1143a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1144a30f8f8cSSatish Balay }
1145a30f8f8cSSatish Balay 
11464a2ae208SSatish Balay #undef __FUNCT__
11474a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1148dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1149a30f8f8cSSatish Balay {
1150a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1151a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1152dfbe8321SBarry Smith   PetscErrorCode ierr;
1153a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1154a30f8f8cSSatish Balay 
1155a30f8f8cSSatish Balay   PetscFunctionBegin;
1156521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1157a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1158a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1159a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1160a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1161a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1162a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1163a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1164a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1165a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1166a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1167a30f8f8cSSatish Balay     info->memory       = isend[3];
1168a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1169a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1170d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1171a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1172a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1173a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1174a30f8f8cSSatish Balay     info->memory       = irecv[3];
1175a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1176a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1177d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1178a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1179a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1180a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1181a30f8f8cSSatish Balay     info->memory       = irecv[3];
1182a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1183a30f8f8cSSatish Balay   } else {
118477431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1185a30f8f8cSSatish Balay   }
1186f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1187f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1188f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1189f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1190a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1191a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1192a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1193a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1194a30f8f8cSSatish Balay }
1195a30f8f8cSSatish Balay 
11964a2ae208SSatish Balay #undef __FUNCT__
11974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1198dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1199a30f8f8cSSatish Balay {
1200a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1201dfbe8321SBarry Smith   PetscErrorCode ierr;
1202a30f8f8cSSatish Balay 
1203a30f8f8cSSatish Balay   PetscFunctionBegin;
1204e98b92d7SKris Buschelman   switch (op) {
1205e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1206e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1207e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1208e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1209e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1210e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1211e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1212a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1213a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1214e98b92d7SKris Buschelman     break;
1215e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1216a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1217a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1218a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1219e98b92d7SKris Buschelman     break;
1220e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1221e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1222e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
122363ba0a88SBarry Smith     ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr);
1224e98b92d7SKris Buschelman     break;
1225e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1226a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1227a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1228a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1229e98b92d7SKris Buschelman     break;
1230e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1231a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1232e98b92d7SKris Buschelman     break;
1233e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
123429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1235e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1236a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1237e98b92d7SKris Buschelman     break;
12389a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12399a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12409a4540c5SBarry Smith   case MAT_HERMITIAN:
12419a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
124277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
124377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12449a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12459a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12469a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
124777e54ba9SKris Buschelman     break;
1248e98b92d7SKris Buschelman   default:
124929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1250a30f8f8cSSatish Balay   }
1251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1252a30f8f8cSSatish Balay }
1253a30f8f8cSSatish Balay 
12544a2ae208SSatish Balay #undef __FUNCT__
12558115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1256dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1257a30f8f8cSSatish Balay {
1258dfbe8321SBarry Smith   PetscErrorCode ierr;
1259a30f8f8cSSatish Balay   PetscFunctionBegin;
1260999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
12618115998fSBarry Smith   PetscFunctionReturn(0);
1262a30f8f8cSSatish Balay }
1263a30f8f8cSSatish Balay 
12644a2ae208SSatish Balay #undef __FUNCT__
12654a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1266dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1267a30f8f8cSSatish Balay {
1268a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1269a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1270dfbe8321SBarry Smith   PetscErrorCode ierr;
12715e90f9d9SHong Zhang   PetscInt       nv,m,n;
1272b3bf805bSHong Zhang   PetscTruth     flg;
1273a30f8f8cSSatish Balay 
1274a30f8f8cSSatish Balay   PetscFunctionBegin;
1275a30f8f8cSSatish Balay   if (ll != rr){
1276b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1277b3bf805bSHong Zhang     if (!flg)
127829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1279a30f8f8cSSatish Balay   }
1280b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1281b3bf805bSHong Zhang 
12825e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12835e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1284b3bf805bSHong Zhang 
12855e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12865e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12875e90f9d9SHong Zhang 
1288a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
12895e90f9d9SHong Zhang 
12905e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1291a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12925e90f9d9SHong Zhang 
12935e90f9d9SHong Zhang   /* scale the diagonal part */
1294a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1295a30f8f8cSSatish Balay 
12965e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1297a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1298a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1299a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1300a30f8f8cSSatish Balay }
1301a30f8f8cSSatish Balay 
13024a2ae208SSatish Balay #undef __FUNCT__
13034a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1304dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1305a30f8f8cSSatish Balay {
1306a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1307a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
13081302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1309dfbe8321SBarry Smith   PetscErrorCode    ierr;
1310a30f8f8cSSatish Balay 
1311a30f8f8cSSatish Balay   PetscFunctionBegin;
1312a30f8f8cSSatish Balay   if (!a->rank) {
1313a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1314a30f8f8cSSatish Balay   }
13151302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1316a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1317a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1318a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1319a30f8f8cSSatish Balay }
1320a30f8f8cSSatish Balay 
13214a2ae208SSatish Balay #undef __FUNCT__
13224a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1323dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1324a30f8f8cSSatish Balay {
1325f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1326dfbe8321SBarry Smith   PetscErrorCode ierr;
1327a30f8f8cSSatish Balay 
1328a30f8f8cSSatish Balay   PetscFunctionBegin;
1329a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1330a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1331a30f8f8cSSatish Balay }
1332a30f8f8cSSatish Balay 
13336849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1334a30f8f8cSSatish Balay 
13354a2ae208SSatish Balay #undef __FUNCT__
13364a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1337dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1338a30f8f8cSSatish Balay {
1339a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1340a30f8f8cSSatish Balay   Mat            a,b,c,d;
1341a30f8f8cSSatish Balay   PetscTruth     flg;
1342dfbe8321SBarry Smith   PetscErrorCode ierr;
1343a30f8f8cSSatish Balay 
1344a30f8f8cSSatish Balay   PetscFunctionBegin;
1345a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1346a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1347a30f8f8cSSatish Balay 
1348a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1349abc0a331SBarry Smith   if (flg) {
1350a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1351a30f8f8cSSatish Balay   }
1352a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1353a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1354a30f8f8cSSatish Balay }
1355a30f8f8cSSatish Balay 
13564a2ae208SSatish Balay #undef __FUNCT__
13574a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1358dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1359273d9f13SBarry Smith {
1360dfbe8321SBarry Smith   PetscErrorCode ierr;
1361273d9f13SBarry Smith 
1362273d9f13SBarry Smith   PetscFunctionBegin;
1363273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1364273d9f13SBarry Smith   PetscFunctionReturn(0);
1365273d9f13SBarry Smith }
1366a5e6ed63SBarry Smith 
1367a5e6ed63SBarry Smith #undef __FUNCT__
1368a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
13691302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1370a5e6ed63SBarry Smith {
13716849ba73SBarry Smith   PetscErrorCode ierr;
13721302d50aSBarry Smith   PetscInt       i;
1373a5e6ed63SBarry Smith   PetscTruth     flg;
1374a5e6ed63SBarry Smith 
13756849ba73SBarry Smith   PetscFunctionBegin;
1376a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1377a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1378a5e6ed63SBarry Smith     if (!flg) {
13791302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1380a5e6ed63SBarry Smith     }
1381a5e6ed63SBarry Smith   }
1382a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1383a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1384a5e6ed63SBarry Smith }
1385a5e6ed63SBarry Smith 
1386a5e6ed63SBarry Smith 
1387a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1388a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1389a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1390a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1391a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1392a9d4b620SHong Zhang        MatMult_MPISBAIJ,
139397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1394a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1395a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1396a30f8f8cSSatish Balay        0,
1397a30f8f8cSSatish Balay        0,
1398a30f8f8cSSatish Balay        0,
139997304618SKris Buschelman /*10*/ 0,
1400a30f8f8cSSatish Balay        0,
1401a30f8f8cSSatish Balay        0,
14022798e883SHong Zhang        MatRelax_MPISBAIJ,
1403a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
140497304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1405a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1406a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1407a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1408a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
140997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1410a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1411a30f8f8cSSatish Balay        0,
1412a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1413a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1414dcf5cc72SBarry Smith /*25*/ 0,
1415a30f8f8cSSatish Balay        0,
1416a30f8f8cSSatish Balay        0,
1417a30f8f8cSSatish Balay        0,
1418a30f8f8cSSatish Balay        0,
141997304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1420b5df2d14SHong Zhang        0,
1421a30f8f8cSSatish Balay        0,
1422a30f8f8cSSatish Balay        0,
1423a30f8f8cSSatish Balay        0,
142497304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1425a30f8f8cSSatish Balay        0,
1426a30f8f8cSSatish Balay        0,
1427a30f8f8cSSatish Balay        0,
1428a30f8f8cSSatish Balay        0,
142997304618SKris Buschelman /*40*/ 0,
1430a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1431d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1432a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1433a30f8f8cSSatish Balay        0,
143497304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1435a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1436a30f8f8cSSatish Balay        0,
1437a30f8f8cSSatish Balay        0,
1438a30f8f8cSSatish Balay        0,
1439521d7252SBarry Smith /*50*/ 0,
1440a30f8f8cSSatish Balay        0,
1441a30f8f8cSSatish Balay        0,
1442a30f8f8cSSatish Balay        0,
1443a30f8f8cSSatish Balay        0,
144497304618SKris Buschelman /*55*/ 0,
1445a30f8f8cSSatish Balay        0,
1446a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1447a30f8f8cSSatish Balay        0,
1448a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
144997304618SKris Buschelman /*60*/ 0,
1450a30f8f8cSSatish Balay        0,
1451a30f8f8cSSatish Balay        0,
14528a124369SBarry Smith        MatGetPetscMaps_Petsc,
145324d5174aSHong Zhang        0,
145497304618SKris Buschelman /*65*/ 0,
145524d5174aSHong Zhang        0,
145624d5174aSHong Zhang        0,
145724d5174aSHong Zhang        0,
145824d5174aSHong Zhang        0,
145997304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
146024d5174aSHong Zhang        0,
146197304618SKris Buschelman        0,
146297304618SKris Buschelman        0,
146397304618SKris Buschelman        0,
146497304618SKris Buschelman /*75*/ 0,
146597304618SKris Buschelman        0,
146697304618SKris Buschelman        0,
146797304618SKris Buschelman        0,
146897304618SKris Buschelman        0,
146997304618SKris Buschelman /*80*/ 0,
147097304618SKris Buschelman        0,
147197304618SKris Buschelman        0,
147297304618SKris Buschelman        0,
1473865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1474865e5f61SKris Buschelman /*85*/ 0,
1475865e5f61SKris Buschelman        0,
1476865e5f61SKris Buschelman        0,
1477865e5f61SKris Buschelman        0,
1478865e5f61SKris Buschelman        0,
1479865e5f61SKris Buschelman /*90*/ 0,
1480865e5f61SKris Buschelman        0,
1481865e5f61SKris Buschelman        0,
1482865e5f61SKris Buschelman        0,
1483865e5f61SKris Buschelman        0,
1484865e5f61SKris Buschelman /*95*/ 0,
1485865e5f61SKris Buschelman        0,
1486865e5f61SKris Buschelman        0,
1487865e5f61SKris Buschelman        0};
1488a30f8f8cSSatish Balay 
1489a30f8f8cSSatish Balay 
1490a30f8f8cSSatish Balay EXTERN_C_BEGIN
14914a2ae208SSatish Balay #undef __FUNCT__
14924a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1493*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1494a30f8f8cSSatish Balay {
1495a30f8f8cSSatish Balay   PetscFunctionBegin;
1496a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1497a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1498a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1499a30f8f8cSSatish Balay }
1500a30f8f8cSSatish Balay EXTERN_C_END
1501a30f8f8cSSatish Balay 
1502273d9f13SBarry Smith EXTERN_C_BEGIN
15034a2ae208SSatish Balay #undef __FUNCT__
1504a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1505*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1506a23d5eceSKris Buschelman {
1507a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1508dfbe8321SBarry Smith   PetscErrorCode ierr;
15091302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1510a23d5eceSKris Buschelman 
1511a23d5eceSKris Buschelman   PetscFunctionBegin;
1512a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1513a23d5eceSKris Buschelman 
1514a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1515a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1516a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
151777431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
151877431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1519a23d5eceSKris Buschelman   if (d_nnz) {
1520a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
152177431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1522a23d5eceSKris Buschelman     }
1523a23d5eceSKris Buschelman   }
1524a23d5eceSKris Buschelman   if (o_nnz) {
1525a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
152677431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1527a23d5eceSKris Buschelman     }
1528a23d5eceSKris Buschelman   }
1529a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1530a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1531a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1532a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1533a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1534a23d5eceSKris Buschelman 
1535a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1536a23d5eceSKris Buschelman   mbs = B->m/bs;
1537a23d5eceSKris Buschelman   Mbs = B->M/bs;
1538a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
153977431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1540a23d5eceSKris Buschelman   }
1541a23d5eceSKris Buschelman 
1542521d7252SBarry Smith   B->bs  = bs;
1543a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1544a23d5eceSKris Buschelman   b->mbs = mbs;
1545a23d5eceSKris Buschelman   b->nbs = mbs;
1546a23d5eceSKris Buschelman   b->Mbs = Mbs;
1547a23d5eceSKris Buschelman   b->Nbs = Mbs;
1548a23d5eceSKris Buschelman 
1549a7cc72afSBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
1550a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1551a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1552a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1553a23d5eceSKris Buschelman   }
1554a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1555a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1556a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1557a23d5eceSKris Buschelman   b->cend      = b->rend;
1558a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1559a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1560a23d5eceSKris Buschelman   }
1561a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1562a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1563a23d5eceSKris Buschelman 
1564a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1565a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1566a23d5eceSKris Buschelman 
15679c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr);
15689c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1569c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
157052e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
15719c097c71SKris Buschelman 
15729c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr);
15734aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1574589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
157552e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1576a23d5eceSKris Buschelman 
1577a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1578a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1579a23d5eceSKris Buschelman 
1580a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1581a23d5eceSKris Buschelman }
1582a23d5eceSKris Buschelman EXTERN_C_END
1583a23d5eceSKris Buschelman 
15840bad9183SKris Buschelman /*MC
1585fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
15860bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15870bad9183SKris Buschelman 
15880bad9183SKris Buschelman    Options Database Keys:
15890bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
15900bad9183SKris Buschelman 
15910bad9183SKris Buschelman   Level: beginner
15920bad9183SKris Buschelman 
15930bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
15940bad9183SKris Buschelman M*/
15950bad9183SKris Buschelman 
1596a23d5eceSKris Buschelman EXTERN_C_BEGIN
1597a23d5eceSKris Buschelman #undef __FUNCT__
15984a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1599*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1600b5df2d14SHong Zhang {
1601b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1602dfbe8321SBarry Smith   PetscErrorCode ierr;
1603b5df2d14SHong Zhang   PetscTruth     flg;
1604b5df2d14SHong Zhang 
1605b5df2d14SHong Zhang   PetscFunctionBegin;
1606b5df2d14SHong Zhang 
1607b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1608b0a32e0cSBarry Smith   B->data = (void*)b;
1609b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1610b5df2d14SHong Zhang 
1611b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1612b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1613b5df2d14SHong Zhang   B->mapping    = 0;
1614b5df2d14SHong Zhang   B->factor     = 0;
1615b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1616b5df2d14SHong Zhang 
1617b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1618b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1619b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1620b5df2d14SHong Zhang 
1621b5df2d14SHong Zhang   /* build local table of row and column ownerships */
16221302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1623273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1624273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
162552e6d16bSBarry Smith   ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1626b5df2d14SHong Zhang 
1627b5df2d14SHong Zhang   /* build cache for off array entries formed */
1628b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1629b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1630b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1631b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1632b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1633b5df2d14SHong Zhang 
1634f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1635b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
163664a35ccbSBarry Smith   b->setvalueslen     = 0;
1637b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1638b5df2d14SHong Zhang #endif
1639b5df2d14SHong Zhang 
1640b5df2d14SHong Zhang   /* stuff used in block assembly */
1641b5df2d14SHong Zhang   b->barray       = 0;
1642b5df2d14SHong Zhang 
1643b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1644b5df2d14SHong Zhang   b->lvec         = 0;
1645b5df2d14SHong Zhang   b->Mvctx        = 0;
164640781036SHong Zhang   b->slvec0       = 0;
164740781036SHong Zhang   b->slvec0b      = 0;
164840781036SHong Zhang   b->slvec1       = 0;
164940781036SHong Zhang   b->slvec1a      = 0;
165040781036SHong Zhang   b->slvec1b      = 0;
165140781036SHong Zhang   b->sMvctx       = 0;
1652b5df2d14SHong Zhang 
1653b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1654b5df2d14SHong Zhang   b->rowindices   = 0;
1655b5df2d14SHong Zhang   b->rowvalues    = 0;
1656b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1657b5df2d14SHong Zhang 
1658b5df2d14SHong Zhang   /* hash table stuff */
1659b5df2d14SHong Zhang   b->ht           = 0;
1660b5df2d14SHong Zhang   b->hd           = 0;
1661b5df2d14SHong Zhang   b->ht_size      = 0;
1662b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1663b5df2d14SHong Zhang   b->ht_fact      = 0;
1664b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1665b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1666b5df2d14SHong Zhang 
1667e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1668b5df2d14SHong Zhang   if (flg) {
1669f6275e2eSBarry Smith     PetscReal fact = 1.39;
1670b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1671e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1672b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1673b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
167463ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr);
1675b5df2d14SHong Zhang   }
1676b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1677b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1678b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1679b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1680b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1681b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1682b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1683b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1684b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1685a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1686a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1687a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
168823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
168923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
169023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
169123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1692b5df2d14SHong Zhang   PetscFunctionReturn(0);
1693b5df2d14SHong Zhang }
1694273d9f13SBarry Smith EXTERN_C_END
1695b5df2d14SHong Zhang 
1696209238afSKris Buschelman /*MC
1697002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1698209238afSKris Buschelman 
1699209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1700209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1701209238afSKris Buschelman 
1702209238afSKris Buschelman    Options Database Keys:
1703209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1704209238afSKris Buschelman 
1705209238afSKris Buschelman   Level: beginner
1706209238afSKris Buschelman 
1707209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1708209238afSKris Buschelman M*/
1709209238afSKris Buschelman 
1710209238afSKris Buschelman EXTERN_C_BEGIN
1711209238afSKris Buschelman #undef __FUNCT__
1712209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1713*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1714dfbe8321SBarry Smith {
17156849ba73SBarry Smith   PetscErrorCode ierr;
17161302d50aSBarry Smith   PetscMPIInt    size;
1717209238afSKris Buschelman 
1718209238afSKris Buschelman   PetscFunctionBegin;
1719209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1720209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1721209238afSKris Buschelman   if (size == 1) {
1722209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1723209238afSKris Buschelman   } else {
1724209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1725209238afSKris Buschelman   }
1726209238afSKris Buschelman   PetscFunctionReturn(0);
1727209238afSKris Buschelman }
1728209238afSKris Buschelman EXTERN_C_END
1729209238afSKris Buschelman 
17304a2ae208SSatish Balay #undef __FUNCT__
17314a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1732b5df2d14SHong Zhang /*@C
1733b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1734b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1735b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1736b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1737b5df2d14SHong Zhang 
1738b5df2d14SHong Zhang    Collective on Mat
1739b5df2d14SHong Zhang 
1740b5df2d14SHong Zhang    Input Parameters:
1741b5df2d14SHong Zhang +  A - the matrix
1742b5df2d14SHong Zhang .  bs   - size of blockk
1743b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1744b5df2d14SHong Zhang            submatrix  (same for all local rows)
1745b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17466d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17476d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17486d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1749b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1750b5df2d14SHong Zhang            submatrix (same for all local rows).
1751b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1752b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1753b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1754b5df2d14SHong Zhang 
1755b5df2d14SHong Zhang 
1756b5df2d14SHong Zhang    Options Database Keys:
1757b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1758b5df2d14SHong Zhang                      block calculations (much slower)
1759b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1760b5df2d14SHong Zhang 
1761b5df2d14SHong Zhang    Notes:
1762b5df2d14SHong Zhang 
1763b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1764b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1765b5df2d14SHong Zhang 
176649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
176749a6f317SBarry Smith 
1768b5df2d14SHong Zhang    Storage Information:
1769b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1770b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1771b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1772b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1773b5df2d14SHong Zhang 
1774b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1775b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1776b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1777b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1778b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1779b5df2d14SHong Zhang 
1780b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1781b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1782b5df2d14SHong Zhang 
1783b5df2d14SHong Zhang .vb
1784b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1785b5df2d14SHong Zhang           -------------------
1786b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1787b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1788b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1789b5df2d14SHong Zhang           -------------------
1790b5df2d14SHong Zhang .ve
1791b5df2d14SHong Zhang 
1792b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1793b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17946d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17956d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1796b5df2d14SHong Zhang 
17976d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17986d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1799b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1800b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1801b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1802b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1803b5df2d14SHong Zhang    matrices.
1804b5df2d14SHong Zhang 
1805b5df2d14SHong Zhang    Level: intermediate
1806b5df2d14SHong Zhang 
1807b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1808b5df2d14SHong Zhang 
1809b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1810b5df2d14SHong Zhang @*/
1811*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1812b5df2d14SHong Zhang {
18131302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1814b5df2d14SHong Zhang 
1815b5df2d14SHong Zhang   PetscFunctionBegin;
1816a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1817a23d5eceSKris Buschelman   if (f) {
1818a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1819b5df2d14SHong Zhang   }
1820b5df2d14SHong Zhang   PetscFunctionReturn(0);
1821b5df2d14SHong Zhang }
1822b5df2d14SHong Zhang 
18234a2ae208SSatish Balay #undef __FUNCT__
18244a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1825a30f8f8cSSatish Balay /*@C
1826a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1827a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1828a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1829a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1830a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1831a30f8f8cSSatish Balay 
1832a30f8f8cSSatish Balay    Collective on MPI_Comm
1833a30f8f8cSSatish Balay 
1834a30f8f8cSSatish Balay    Input Parameters:
1835a30f8f8cSSatish Balay +  comm - MPI communicator
1836a30f8f8cSSatish Balay .  bs   - size of blockk
1837a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1838a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1839a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1840a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1841a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1842a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1843a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1844a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1845a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1846a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1847a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18486d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18496d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18506d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1851a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1852a30f8f8cSSatish Balay            submatrix (same for all local rows).
1853a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1854a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1855a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1856a30f8f8cSSatish Balay 
1857a30f8f8cSSatish Balay    Output Parameter:
1858a30f8f8cSSatish Balay .  A - the matrix
1859a30f8f8cSSatish Balay 
1860a30f8f8cSSatish Balay    Options Database Keys:
1861a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1862a30f8f8cSSatish Balay                      block calculations (much slower)
1863a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1864a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1865a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1866a30f8f8cSSatish Balay 
1867a30f8f8cSSatish Balay    Notes:
1868d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1869d1be2dadSMatthew Knepley 
1870a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1871a30f8f8cSSatish Balay    (possibly both).
1872a30f8f8cSSatish Balay 
1873a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1874a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1875a30f8f8cSSatish Balay 
187649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
187749a6f317SBarry Smith 
1878a30f8f8cSSatish Balay    Storage Information:
1879a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1880a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1881a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1882a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1883a30f8f8cSSatish Balay 
1884a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1885a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1886a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1887a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1888a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1889a30f8f8cSSatish Balay 
1890a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1891a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1892a30f8f8cSSatish Balay 
1893a30f8f8cSSatish Balay .vb
1894a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1895a30f8f8cSSatish Balay           -------------------
1896a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1897a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1898a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1899a30f8f8cSSatish Balay           -------------------
1900a30f8f8cSSatish Balay .ve
1901a30f8f8cSSatish Balay 
1902a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1903a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19046d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19056d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1906a30f8f8cSSatish Balay 
19076d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19086d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1909a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1910a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1911a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1912a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1913a30f8f8cSSatish Balay    matrices.
1914a30f8f8cSSatish Balay 
1915a30f8f8cSSatish Balay    Level: intermediate
1916a30f8f8cSSatish Balay 
1917a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1918a30f8f8cSSatish Balay 
1919a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1920a30f8f8cSSatish Balay @*/
1921a30f8f8cSSatish Balay 
1922*be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1923a30f8f8cSSatish Balay {
19246849ba73SBarry Smith   PetscErrorCode ierr;
19251302d50aSBarry Smith   PetscMPIInt    size;
1926a30f8f8cSSatish Balay 
1927a30f8f8cSSatish Balay   PetscFunctionBegin;
1928b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1929273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1930273d9f13SBarry Smith   if (size > 1) {
1931b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1932b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1933273d9f13SBarry Smith   } else {
1934273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1935273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1936273d9f13SBarry Smith   }
1937a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1938a30f8f8cSSatish Balay }
1939a30f8f8cSSatish Balay 
1940a30f8f8cSSatish Balay 
19414a2ae208SSatish Balay #undef __FUNCT__
19424a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
19436849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1944a30f8f8cSSatish Balay {
1945a30f8f8cSSatish Balay   Mat            mat;
1946a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1947dfbe8321SBarry Smith   PetscErrorCode ierr;
1948521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
1949387bc808SHong Zhang   PetscScalar    *array;
1950a30f8f8cSSatish Balay 
1951a30f8f8cSSatish Balay   PetscFunctionBegin;
1952a30f8f8cSSatish Balay   *newmat       = 0;
1953b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1954be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
19551d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1956e1b6402fSHong Zhang 
195782327fa8SHong Zhang   mat->factor       = matin->factor;
1958273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
195982327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
19607fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
19617fff6886SHong Zhang 
1962b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1963521d7252SBarry Smith   mat->bs  = matin->bs;
1964a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
1965a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
1966a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
1967a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
1968a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
1969a30f8f8cSSatish Balay 
1970a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1971a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1972a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1973a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1974a30f8f8cSSatish Balay   a->size         = oldmat->size;
1975a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1976a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1977a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1978a30f8f8cSSatish Balay   a->rowindices   = 0;
1979a30f8f8cSSatish Balay   a->rowvalues    = 0;
1980a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1981a30f8f8cSSatish Balay   a->barray       = 0;
1982a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1983a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1984a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1985a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1986a30f8f8cSSatish Balay 
1987a30f8f8cSSatish Balay   /* hash table stuff */
1988a30f8f8cSSatish Balay   a->ht           = 0;
1989a30f8f8cSSatish Balay   a->hd           = 0;
1990a30f8f8cSSatish Balay   a->ht_size      = 0;
1991a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1992a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1993a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1994a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1995a30f8f8cSSatish Balay 
19961302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
1997a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
1998521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
1999a30f8f8cSSatish Balay   if (oldmat->colmap) {
2000a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2001a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2002a30f8f8cSSatish Balay #else
20031302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
200452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20051302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2006a30f8f8cSSatish Balay #endif
2007a30f8f8cSSatish Balay   } else a->colmap = 0;
2008387bc808SHong Zhang 
2009a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20101302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
201152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20121302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2013a30f8f8cSSatish Balay   } else a->garray = 0;
2014a30f8f8cSSatish Balay 
2015a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
201652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2017a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
201852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
201982327fa8SHong Zhang 
202082327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
202152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
202282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
202352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2024387bc808SHong Zhang 
2025387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
20261ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2027387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2028387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
20291ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
20301ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2031387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
20321ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
203352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
203452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
203552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
203652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
203752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2038387bc808SHong Zhang 
2039387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2040387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2041387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
204252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
204382327fa8SHong Zhang 
2044a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
204552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2046a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
204752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2048b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2049a30f8f8cSSatish Balay   *newmat = mat;
2050a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2051a30f8f8cSSatish Balay }
2052a30f8f8cSSatish Balay 
2053a30f8f8cSSatish Balay #include "petscsys.h"
2054a30f8f8cSSatish Balay 
20554a2ae208SSatish Balay #undef __FUNCT__
20564a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2057dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
2058a30f8f8cSSatish Balay {
2059a30f8f8cSSatish Balay   Mat            A;
20606849ba73SBarry Smith   PetscErrorCode ierr;
206113f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
206287828ca2SBarry Smith   PetscScalar    *vals,*buf;
2063a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2064a30f8f8cSSatish Balay   MPI_Status     status;
206513f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners;
206613f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
206713f74950SBarry Smith   PetscInt       *locrowlens,*procsnz = 0,jj,*mycols,*ibuf;
20681302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
20691302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
20701302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
207113f74950SBarry Smith   int            fd;
2072a30f8f8cSSatish Balay 
2073a30f8f8cSSatish Balay   PetscFunctionBegin;
2074b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2075a30f8f8cSSatish Balay 
2076a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2077a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2078a30f8f8cSSatish Balay   if (!rank) {
2079b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2080a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2081552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2082a30f8f8cSSatish Balay     if (header[3] < 0) {
208329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2084a30f8f8cSSatish Balay     }
2085a30f8f8cSSatish Balay   }
2086a30f8f8cSSatish Balay 
2087a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2088a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2089a30f8f8cSSatish Balay 
209029bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2091a30f8f8cSSatish Balay 
2092a30f8f8cSSatish Balay   /*
2093a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2094a30f8f8cSSatish Balay      divisible by the blocksize
2095a30f8f8cSSatish Balay   */
2096a30f8f8cSSatish Balay   Mbs        = M/bs;
2097a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2098a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2099a30f8f8cSSatish Balay   else                  Mbs++;
2100a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
210163ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
2102a30f8f8cSSatish Balay   }
2103a30f8f8cSSatish Balay 
2104a30f8f8cSSatish Balay   /* determine ownership of all rows */
2105a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2106a30f8f8cSSatish Balay   m          = mbs*bs;
2107a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2108a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2109a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2110a30f8f8cSSatish Balay   rowners[0] = 0;
2111a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2112a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2113a30f8f8cSSatish Balay   rstart = rowners[rank];
2114a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2115a30f8f8cSSatish Balay 
2116a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
21171302d50aSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
2118a30f8f8cSSatish Balay   if (!rank) {
21191302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2120a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2121a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2122a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2123a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2124a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2125a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2126a30f8f8cSSatish Balay   } else {
2127a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2128a30f8f8cSSatish Balay   }
2129a30f8f8cSSatish Balay 
21300222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2131a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
21321302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
21331302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2134a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2135a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2136a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2137a30f8f8cSSatish Balay       }
2138a30f8f8cSSatish Balay     }
2139a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2140a30f8f8cSSatish Balay 
2141a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2142a30f8f8cSSatish Balay     maxnz = 0;
2143a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2144a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2145a30f8f8cSSatish Balay     }
21461302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2147a30f8f8cSSatish Balay 
2148a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2149a30f8f8cSSatish Balay     nz     = procsnz[0];
21501302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay     mycols = ibuf;
2152a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2153a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2154a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2155a30f8f8cSSatish Balay 
2156a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2157a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2158a30f8f8cSSatish Balay       nz   = procsnz[i];
2159a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2160a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay     }
2162a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2163a30f8f8cSSatish Balay     if (size != 1) {
2164a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2165a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2166a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2167a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2168a30f8f8cSSatish Balay     }
2169a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21700222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2171a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2172a30f8f8cSSatish Balay     nz = 0;
2173a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2174a30f8f8cSSatish Balay       nz += locrowlens[i];
2175a30f8f8cSSatish Balay     }
21761302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay     mycols = ibuf;
2178a30f8f8cSSatish Balay     /* receive message of column indices*/
2179a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2180a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
218129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2182a30f8f8cSSatish Balay   }
2183a30f8f8cSSatish Balay 
2184a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
21851302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2186a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
21871302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
21881302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2190a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2191a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2192a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2193a30f8f8cSSatish Balay     dcount  = 0;
2194a30f8f8cSSatish Balay     odcount = 0;
2195a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2196a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2197a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21980222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2199a30f8f8cSSatish Balay         if (!mask[tmp]) {
2200a30f8f8cSSatish Balay           mask[tmp] = 1;
22010222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22020222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2203a30f8f8cSSatish Balay         }
2204a30f8f8cSSatish Balay       }
2205a30f8f8cSSatish Balay       rowcount++;
2206a30f8f8cSSatish Balay     }
2207a30f8f8cSSatish Balay 
22080222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22090222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2210a30f8f8cSSatish Balay 
2211a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2212a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2213a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2214a30f8f8cSSatish Balay   }
2215a30f8f8cSSatish Balay 
2216a30f8f8cSSatish Balay   /* create our matrix */
221722191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
221822191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
221922191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2220273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay 
2222a30f8f8cSSatish Balay   if (!rank) {
222387828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2224a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2225a30f8f8cSSatish Balay     nz = procsnz[0];
2226a30f8f8cSSatish Balay     vals = buf;
2227a30f8f8cSSatish Balay     mycols = ibuf;
2228a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2229a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2231a30f8f8cSSatish Balay 
2232a30f8f8cSSatish Balay     /* insert into matrix */
2233a30f8f8cSSatish Balay     jj      = rstart*bs;
2234a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22357e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2236a30f8f8cSSatish Balay       mycols += locrowlens[i];
2237a30f8f8cSSatish Balay       vals   += locrowlens[i];
2238a30f8f8cSSatish Balay       jj++;
2239a30f8f8cSSatish Balay     }
22407e06b45fSHong Zhang 
2241a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2242a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2243a30f8f8cSSatish Balay       nz   = procsnz[i];
2244a30f8f8cSSatish Balay       vals = buf;
2245a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2246a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2247a30f8f8cSSatish Balay     }
2248a30f8f8cSSatish Balay     /* the last proc */
2249a30f8f8cSSatish Balay     if (size != 1){
2250a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2251a30f8f8cSSatish Balay       vals = buf;
2252a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2253a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2254a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay     }
2256a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22577e06b45fSHong Zhang 
2258a30f8f8cSSatish Balay   } else {
2259a30f8f8cSSatish Balay     /* receive numeric values */
226087828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2261a30f8f8cSSatish Balay 
2262a30f8f8cSSatish Balay     /* receive message of values*/
2263a30f8f8cSSatish Balay     vals   = buf;
2264a30f8f8cSSatish Balay     mycols = ibuf;
2265a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
226729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2268a30f8f8cSSatish Balay 
2269a30f8f8cSSatish Balay     /* insert into matrix */
2270a30f8f8cSSatish Balay     jj      = rstart*bs;
2271a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2272a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2273a30f8f8cSSatish Balay       mycols += locrowlens[i];
2274a30f8f8cSSatish Balay       vals   += locrowlens[i];
2275a30f8f8cSSatish Balay       jj++;
2276a30f8f8cSSatish Balay     }
2277a30f8f8cSSatish Balay   }
22787e06b45fSHong Zhang 
2279a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2280a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2281a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2282a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2283a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2284a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2285a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2286a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
228722191285SKris Buschelman   *newmat = A;
2288a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2289a30f8f8cSSatish Balay }
2290a30f8f8cSSatish Balay 
22914a2ae208SSatish Balay #undef __FUNCT__
22924a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2293dcf5cc72SBarry Smith /*XXXXX@
2294a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2295a30f8f8cSSatish Balay 
2296a30f8f8cSSatish Balay    Input Parameters:
2297a30f8f8cSSatish Balay .  mat  - the matrix
2298a30f8f8cSSatish Balay .  fact - factor
2299a30f8f8cSSatish Balay 
2300a30f8f8cSSatish Balay    Collective on Mat
2301a30f8f8cSSatish Balay 
2302a30f8f8cSSatish Balay    Level: advanced
2303a30f8f8cSSatish Balay 
2304a30f8f8cSSatish Balay   Notes:
2305a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2306a30f8f8cSSatish Balay 
2307a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2308a30f8f8cSSatish Balay 
2309a30f8f8cSSatish Balay .seealso: MatSetOption()
2310dcf5cc72SBarry Smith @XXXXX*/
2311dcf5cc72SBarry Smith 
231224d5174aSHong Zhang 
23134a2ae208SSatish Balay #undef __FUNCT__
23144a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2315dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
231624d5174aSHong Zhang {
231724d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2318f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2319ca54ac64SHong Zhang   PetscReal      atmp;
232087828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2321dfbe8321SBarry Smith   PetscErrorCode ierr;
23221302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
23231302d50aSBarry Smith   PetscMPIInt    rank,size;
23241302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
232587828ca2SBarry Smith   PetscScalar    *va;
23268a1c53f2SBarry Smith   MatScalar      *ba;
2327f4c0e9e4SHong Zhang   MPI_Status     stat;
232824d5174aSHong Zhang 
232924d5174aSHong Zhang   PetscFunctionBegin;
2330d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
23311ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2332f4c0e9e4SHong Zhang 
233356faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
233456faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2335f4c0e9e4SHong Zhang 
2336521d7252SBarry Smith   bs   = A->bs;
2337f4c0e9e4SHong Zhang   mbs  = a->mbs;
2338f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2339f4c0e9e4SHong Zhang   ba   = b->a;
2340f4c0e9e4SHong Zhang   bi   = b->i;
2341f4c0e9e4SHong Zhang   bj   = b->j;
2342f4c0e9e4SHong Zhang 
2343f4c0e9e4SHong Zhang   /* find ownerships */
2344f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2345f4c0e9e4SHong Zhang 
2346f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
234782502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2348ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2349f4c0e9e4SHong Zhang 
2350f4c0e9e4SHong Zhang   /* row_max for B */
2351b8475685SHong Zhang   if (rank != size-1){
2352f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2353f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2354f4c0e9e4SHong Zhang       brow  = bs*i;
2355f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2356f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2357f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2358ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
235904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2360f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2361f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2362ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2363ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2364f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2365f4c0e9e4SHong Zhang           }
2366f4c0e9e4SHong Zhang         }
2367f4c0e9e4SHong Zhang         bj++;
2368f4c0e9e4SHong Zhang       }
2369f4c0e9e4SHong Zhang     }
2370f4c0e9e4SHong Zhang 
2371f4c0e9e4SHong Zhang     /* send values to its owners */
2372f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2373f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2374ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
237556faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2376ca54ac64SHong Zhang     }
2377f4c0e9e4SHong Zhang   }
2378f4c0e9e4SHong Zhang 
2379f4c0e9e4SHong Zhang   /* receive values */
2380ca54ac64SHong Zhang   if (rank){
2381f4c0e9e4SHong Zhang     rvalues = work;
2382ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2383f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
238456faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2385f4c0e9e4SHong Zhang       /* process values */
2386f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2387ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2388f4c0e9e4SHong Zhang       }
2389f4c0e9e4SHong Zhang     }
2390ca54ac64SHong Zhang   }
2391f4c0e9e4SHong Zhang 
23921ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2393ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
239424d5174aSHong Zhang   PetscFunctionReturn(0);
239524d5174aSHong Zhang }
23962798e883SHong Zhang 
23972798e883SHong Zhang #undef __FUNCT__
23982798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
23991302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24002798e883SHong Zhang {
24012798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2402dfbe8321SBarry Smith   PetscErrorCode ierr;
2403521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2404ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2405ffe4fb16SHong Zhang   Vec            bb1;
2406ffe4fb16SHong Zhang 
2407ffe4fb16SHong Zhang   PetscFunctionBegin;
240877431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2409ffe4fb16SHong Zhang   if (bs > 1)
2410ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2411ffe4fb16SHong Zhang 
2412ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2413ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2414ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2415ffe4fb16SHong Zhang       its--;
2416ffe4fb16SHong Zhang     }
2417ffe4fb16SHong Zhang 
2418ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2419ffe4fb16SHong Zhang     while (its--){
2420ffe4fb16SHong Zhang 
2421ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2422ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2423ffe4fb16SHong Zhang 
2424ffe4fb16SHong Zhang       /* copy xx into slvec0a */
24251ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
24261ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2427ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24281ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2429ffe4fb16SHong Zhang 
2430ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2431ffe4fb16SHong Zhang 
2432ffe4fb16SHong Zhang       /* copy bb into slvec1a */
24331ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
24341ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2435ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24361ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2437ffe4fb16SHong Zhang 
2438ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2439ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2440ffe4fb16SHong Zhang 
2441ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
24421ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
24431ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2444ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2445ffe4fb16SHong Zhang 
2446ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2447ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2448ffe4fb16SHong Zhang 
2449ffe4fb16SHong Zhang       /* local diagonal sweep */
2450ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2451ffe4fb16SHong Zhang     }
2452ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2453ffe4fb16SHong Zhang   } else {
2454ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2455ffe4fb16SHong Zhang   }
2456ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2457ffe4fb16SHong Zhang }
2458ffe4fb16SHong Zhang 
2459ffe4fb16SHong Zhang #undef __FUNCT__
2460ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
24611302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2462ffe4fb16SHong Zhang {
2463ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2464dfbe8321SBarry Smith   PetscErrorCode ierr;
2465d05c616dSSatish Balay   PetscScalar    mone=-1.0;
24662798e883SHong Zhang   Vec            lvec1,bb1;
24672798e883SHong Zhang 
24682798e883SHong Zhang   PetscFunctionBegin;
246977431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2470521d7252SBarry Smith   if (matin->bs > 1)
24712798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24722798e883SHong Zhang 
2473c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
24742798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2475bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
24762798e883SHong Zhang       its--;
24772798e883SHong Zhang     }
24782798e883SHong Zhang 
24792798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
24802798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24812798e883SHong Zhang     while (its--){
24822798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24832798e883SHong Zhang 
24842798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
24852798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
24862798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
24872798e883SHong Zhang 
24882798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24892798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
24902798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24912798e883SHong Zhang 
24922798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
24932798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
24942798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
24952798e883SHong Zhang 
24962798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24972798e883SHong Zhang 
2498c14dc6b6SHong Zhang       /* diagonal sweep */
2499bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25002798e883SHong Zhang     }
25012798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25022798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2503c14dc6b6SHong Zhang   } else {
2504c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2505c14dc6b6SHong Zhang   }
25062798e883SHong Zhang   PetscFunctionReturn(0);
25072798e883SHong Zhang }
25082798e883SHong Zhang 
2509