173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 840781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10d94109b8SHong Zhang extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS[],int); 11f15d580aSBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 12e249d750SSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 13f15d580aSBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode); 14f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 15e249d750SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 32f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 33f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 34f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 35f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 36f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51a30f8f8cSSatish Balay int ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66a30f8f8cSSatish Balay int ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 103a30f8f8cSSatish Balay if (nrow >= rmax) { \ 104a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 105a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 106a30f8f8cSSatish Balay MatScalar *new_a; \ 107a30f8f8cSSatish Balay \ 108a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 109a30f8f8cSSatish Balay \ 110a30f8f8cSSatish Balay /* malloc new storage space */ \ 111a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 11282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 113a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 114a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 115a30f8f8cSSatish Balay \ 116a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 117a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 118a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 119a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 120a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 122a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12387828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 125a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 126a30f8f8cSSatish Balay /* free up old matrix storage */ \ 127a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 128a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 130a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 131a30f8f8cSSatish Balay } \ 132a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 133a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 134a30f8f8cSSatish Balay \ 135a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 136a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 137b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 1386c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 139a30f8f8cSSatish Balay a->reallocs++; \ 1406c6c5352SBarry Smith a->nz++; \ 141a30f8f8cSSatish Balay } \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay a_noinsert:; \ 152a30f8f8cSSatish Balay ailen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 155a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 156a30f8f8cSSatish Balay { \ 157a30f8f8cSSatish Balay brow = row/bs; \ 158a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 159a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 160a30f8f8cSSatish Balay bcol = col/bs; \ 161a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 162a30f8f8cSSatish Balay low = 0; high = nrow; \ 163a30f8f8cSSatish Balay while (high-low > 3) { \ 164a30f8f8cSSatish Balay t = (low+high)/2; \ 165a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 166a30f8f8cSSatish Balay else low = t; \ 167a30f8f8cSSatish Balay } \ 168a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 169a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 170a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 171a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 172a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 173a30f8f8cSSatish Balay else *bap = value; \ 174a30f8f8cSSatish Balay goto b_noinsert; \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay } \ 177a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 178a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 179a30f8f8cSSatish Balay if (nrow >= rmax) { \ 180a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 181a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 182a30f8f8cSSatish Balay MatScalar *new_a; \ 183a30f8f8cSSatish Balay \ 184a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 185a30f8f8cSSatish Balay \ 186a30f8f8cSSatish Balay /* malloc new storage space */ \ 187a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 18882502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 189a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 190a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 191a30f8f8cSSatish Balay \ 192a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 193a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 194a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 195a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 196a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 200a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 201a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 202a30f8f8cSSatish Balay /* free up old matrix storage */ \ 203a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 204a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 207a30f8f8cSSatish Balay } \ 208a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 209a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 210a30f8f8cSSatish Balay \ 211a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 212a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 213b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 214a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 215a30f8f8cSSatish Balay b->reallocs++; \ 216a30f8f8cSSatish Balay b->nz++; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay N = nrow++ - 1; \ 219a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 220a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 221a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 222a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 223a30f8f8cSSatish Balay } \ 224a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 225a30f8f8cSSatish Balay rp[_i] = bcol; \ 226a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 227a30f8f8cSSatish Balay b_noinsert:; \ 228a30f8f8cSSatish Balay bilen[brow] = nrow; \ 229a30f8f8cSSatish Balay } 230a30f8f8cSSatish Balay #endif 231a30f8f8cSSatish Balay 232a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2334a2ae208SSatish Balay #undef __FUNCT__ 2344a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 235f15d580aSBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 236a30f8f8cSSatish Balay { 237a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 238a30f8f8cSSatish Balay int ierr,i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 258f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 262a30f8f8cSSatish Balay MatScalar *vsingle; 263a30f8f8cSSatish Balay 264a30f8f8cSSatish Balay PetscFunctionBegin; 265a30f8f8cSSatish Balay if (N > b->setvalueslen) { 266a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26782502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 268a30f8f8cSSatish Balay b->setvalueslen = N; 269a30f8f8cSSatish Balay } 270a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 271a30f8f8cSSatish Balay for (i=0; i<N; i++) { 272a30f8f8cSSatish Balay vsingle[i] = v[i]; 273a30f8f8cSSatish Balay } 274a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 275a30f8f8cSSatish Balay PetscFunctionReturn(0); 276a30f8f8cSSatish Balay } 277a30f8f8cSSatish Balay 2784a2ae208SSatish Balay #undef __FUNCT__ 2794a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 280f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 281a30f8f8cSSatish Balay { 282a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 283a30f8f8cSSatish Balay int ierr,i,N = m*n; 284a30f8f8cSSatish Balay MatScalar *vsingle; 285a30f8f8cSSatish Balay 286a30f8f8cSSatish Balay PetscFunctionBegin; 28729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 2884d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 289a30f8f8cSSatish Balay } 290a30f8f8cSSatish Balay 2914a2ae208SSatish Balay #undef __FUNCT__ 2924a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 293f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 294a30f8f8cSSatish Balay { 295a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 296a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 297a30f8f8cSSatish Balay MatScalar *vsingle; 298a30f8f8cSSatish Balay 299a30f8f8cSSatish Balay PetscFunctionBegin; 30029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3014d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 302a30f8f8cSSatish Balay } 303a30f8f8cSSatish Balay #endif 304a30f8f8cSSatish Balay 305a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 306a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 307a30f8f8cSSatish Balay */ 3084a2ae208SSatish Balay #undef __FUNCT__ 309e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 310f15d580aSBarry Smith int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 311a30f8f8cSSatish Balay { 312a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 313a30f8f8cSSatish Balay MatScalar value; 314b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 315a30f8f8cSSatish Balay int ierr,i,j,row,col; 316b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 317a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 318a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 319a30f8f8cSSatish Balay 320a30f8f8cSSatish Balay /* Some Variables required in the macro */ 321a30f8f8cSSatish Balay Mat A = baij->A; 322a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 323a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 324a30f8f8cSSatish Balay MatScalar *aa=a->a; 325a30f8f8cSSatish Balay 326a30f8f8cSSatish Balay Mat B = baij->B; 327a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 328a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 329a30f8f8cSSatish Balay MatScalar *ba=b->a; 330a30f8f8cSSatish Balay 331a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 332a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 333a30f8f8cSSatish Balay MatScalar *ap,*bap; 334a30f8f8cSSatish Balay 335a30f8f8cSSatish Balay /* for stash */ 336f65c83cfSHong Zhang int n_loc, *in_loc=0; 337f65c83cfSHong Zhang MatScalar *v_loc=0; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay PetscFunctionBegin; 340a30f8f8cSSatish Balay 341a30f8f8cSSatish Balay if(!baij->donotstash){ 34282502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 34382502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 344a30f8f8cSSatish Balay } 345a30f8f8cSSatish Balay 346a30f8f8cSSatish Balay for (i=0; i<m; i++) { 347a30f8f8cSSatish Balay if (im[i] < 0) continue; 348a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 349590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 350a30f8f8cSSatish Balay #endif 351a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 352a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 353a30f8f8cSSatish Balay for (j=0; j<n; j++) { 354f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 355a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 356a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 357a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 358a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 359a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 360a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 361a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 362a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 363a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 364590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);} 365a30f8f8cSSatish Balay #endif 366a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 367a30f8f8cSSatish Balay if (mat->was_assembled) { 368a30f8f8cSSatish Balay if (!baij->colmap) { 369653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 370a30f8f8cSSatish Balay } 371a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 372a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37371730473SSatish Balay col = col - 1; 374a30f8f8cSSatish Balay #else 37571730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 376a30f8f8cSSatish Balay #endif 377a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 378a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 379a30f8f8cSSatish Balay col = in[j]; 380a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 381a30f8f8cSSatish Balay B = baij->B; 382a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 383a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 384a30f8f8cSSatish Balay ba=b->a; 38571730473SSatish Balay } else col += in[j]%bs; 386a30f8f8cSSatish Balay } else col = in[j]; 387a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 388a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 389a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 390a30f8f8cSSatish Balay } 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay } else { /* off processor entry */ 393a30f8f8cSSatish Balay if (!baij->donotstash) { 394a30f8f8cSSatish Balay n_loc = 0; 395a30f8f8cSSatish Balay for (j=0; j<n; j++){ 396f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 397a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 398a30f8f8cSSatish Balay if (roworiented) { 399a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 400a30f8f8cSSatish Balay } else { 401a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay n_loc++; 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay } 408a30f8f8cSSatish Balay } 409a30f8f8cSSatish Balay 410a30f8f8cSSatish Balay if(!baij->donotstash){ 411a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 412a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 413a30f8f8cSSatish Balay } 414a30f8f8cSSatish Balay PetscFunctionReturn(0); 415a30f8f8cSSatish Balay } 416a30f8f8cSSatish Balay 4174a2ae208SSatish Balay #undef __FUNCT__ 418e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 419f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 420a30f8f8cSSatish Balay { 4210880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 422f15d580aSBarry Smith const MatScalar *value; 423f15d580aSBarry Smith MatScalar *barray=baij->barray; 4240880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 4250880e062SHong Zhang int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 4260880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4270880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4280880e062SHong Zhang 429a30f8f8cSSatish Balay PetscFunctionBegin; 4300880e062SHong Zhang if(!barray) { 4310880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4320880e062SHong Zhang baij->barray = barray; 4330880e062SHong Zhang } 4340880e062SHong Zhang 4350880e062SHong Zhang if (roworiented) { 4360880e062SHong Zhang stepval = (n-1)*bs; 4370880e062SHong Zhang } else { 4380880e062SHong Zhang stepval = (m-1)*bs; 4390880e062SHong Zhang } 4400880e062SHong Zhang for (i=0; i<m; i++) { 4410880e062SHong Zhang if (im[i] < 0) continue; 4420880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 443590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 4440880e062SHong Zhang #endif 4450880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4460880e062SHong Zhang row = im[i] - rstart; 4470880e062SHong Zhang for (j=0; j<n; j++) { 4480880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4490880e062SHong Zhang if ((roworiented) && (n == 1)) { 450f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4510880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 452f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4530880e062SHong Zhang } else { /* Here a copy is required */ 4540880e062SHong Zhang if (roworiented) { 4550880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4560880e062SHong Zhang } else { 4570880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4580880e062SHong Zhang } 4590880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4600880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4610880e062SHong Zhang *barray++ = *value++; 4620880e062SHong Zhang } 4630880e062SHong Zhang } 4640880e062SHong Zhang barray -=bs2; 4650880e062SHong Zhang } 4660880e062SHong Zhang 4670880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4680880e062SHong Zhang col = in[j] - cstart; 4690880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4700880e062SHong Zhang } 4710880e062SHong Zhang else if (in[j] < 0) continue; 4720880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 473590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 4740880e062SHong Zhang #endif 4750880e062SHong Zhang else { 4760880e062SHong Zhang if (mat->was_assembled) { 4770880e062SHong Zhang if (!baij->colmap) { 478653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4790880e062SHong Zhang } 4800880e062SHong Zhang 4810880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4820880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4830880e062SHong Zhang { int data; 4840880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4850880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4860880e062SHong Zhang } 4870880e062SHong Zhang #else 4880880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4890880e062SHong Zhang #endif 4900880e062SHong Zhang #endif 4910880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4920880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4930880e062SHong Zhang col = (col - 1)/bs; 4940880e062SHong Zhang #else 4950880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4960880e062SHong Zhang #endif 4970880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4980880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4990880e062SHong Zhang col = in[j]; 5000880e062SHong Zhang } 5010880e062SHong Zhang } 5020880e062SHong Zhang else col = in[j]; 503e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5040880e062SHong Zhang } 5050880e062SHong Zhang } 5060880e062SHong Zhang } else { 5070880e062SHong Zhang if (!baij->donotstash) { 5080880e062SHong Zhang if (roworiented) { 5090880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5100880e062SHong Zhang } else { 5110880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5120880e062SHong Zhang } 5130880e062SHong Zhang } 5140880e062SHong Zhang } 5150880e062SHong Zhang } 5160880e062SHong Zhang PetscFunctionReturn(0); 517a30f8f8cSSatish Balay } 518a30f8f8cSSatish Balay 519a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 520a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 521a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 522a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5234a2ae208SSatish Balay #undef __FUNCT__ 5244a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 525f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 526a30f8f8cSSatish Balay { 527a30f8f8cSSatish Balay PetscFunctionBegin; 52829bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 52996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 530a30f8f8cSSatish Balay } 531a30f8f8cSSatish Balay 5324a2ae208SSatish Balay #undef __FUNCT__ 5334a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 534f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 535a30f8f8cSSatish Balay { 536a30f8f8cSSatish Balay PetscFunctionBegin; 53729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 53896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay 5414a2ae208SSatish Balay #undef __FUNCT__ 5424a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 543f15d580aSBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 544a30f8f8cSSatish Balay { 545f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 546a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 547a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 548a30f8f8cSSatish Balay 549a30f8f8cSSatish Balay PetscFunctionBegin; 550a30f8f8cSSatish Balay for (i=0; i<m; i++) { 551590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 552590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 553a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 554a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 555a30f8f8cSSatish Balay for (j=0; j<n; j++) { 556590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]); 557590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 558a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 559a30f8f8cSSatish Balay col = idxn[j] - bscstart; 560c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 561a30f8f8cSSatish Balay } else { 562a30f8f8cSSatish Balay if (!baij->colmap) { 563653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 566a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 567a30f8f8cSSatish Balay data --; 568a30f8f8cSSatish Balay #else 569a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 570a30f8f8cSSatish Balay #endif 571a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 572a30f8f8cSSatish Balay else { 573a30f8f8cSSatish Balay col = data + idxn[j]%bs; 574e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay } 577a30f8f8cSSatish Balay } 578a30f8f8cSSatish Balay } else { 57929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 580a30f8f8cSSatish Balay } 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay PetscFunctionReturn(0); 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay 5854a2ae208SSatish Balay #undef __FUNCT__ 5864a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 587a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 588a30f8f8cSSatish Balay { 589a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 590bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 591bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 592a30f8f8cSSatish Balay int ierr; 593a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 594a30f8f8cSSatish Balay 595a30f8f8cSSatish Balay PetscFunctionBegin; 596a30f8f8cSSatish Balay if (baij->size == 1) { 597a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 598a30f8f8cSSatish Balay } else { 599a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 600f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 601a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 602a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 603a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 605a30f8f8cSSatish Balay /* 60656faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 60756faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 608a30f8f8cSSatish Balay */ 609d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 610a30f8f8cSSatish Balay /* 61156faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 61256faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 615a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 616a30f8f8cSSatish Balay } else { 61729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 618a30f8f8cSSatish Balay } 619a30f8f8cSSatish Balay } 620a30f8f8cSSatish Balay PetscFunctionReturn(0); 621a30f8f8cSSatish Balay } 622a30f8f8cSSatish Balay 623a30f8f8cSSatish Balay /* 624a30f8f8cSSatish Balay Creates the hash table, and sets the table 625a30f8f8cSSatish Balay This table is created only once. 626a30f8f8cSSatish Balay If new entried need to be added to the matrix 627a30f8f8cSSatish Balay then the hash table has to be destroyed and 628a30f8f8cSSatish Balay recreated. 629a30f8f8cSSatish Balay */ 6304a2ae208SSatish Balay #undef __FUNCT__ 6314a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 632a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 633a30f8f8cSSatish Balay { 634a30f8f8cSSatish Balay PetscFunctionBegin; 63529bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 63696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 637a30f8f8cSSatish Balay } 638a30f8f8cSSatish Balay 6394a2ae208SSatish Balay #undef __FUNCT__ 6404a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 641a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 642a30f8f8cSSatish Balay { 643a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 644a30f8f8cSSatish Balay int ierr,nstash,reallocs; 645a30f8f8cSSatish Balay InsertMode addv; 646a30f8f8cSSatish Balay 647a30f8f8cSSatish Balay PetscFunctionBegin; 648a30f8f8cSSatish Balay if (baij->donotstash) { 649a30f8f8cSSatish Balay PetscFunctionReturn(0); 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 653a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 654a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 65529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 660a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 661a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 662b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 663a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 664b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 665a30f8f8cSSatish Balay PetscFunctionReturn(0); 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay 6684a2ae208SSatish Balay #undef __FUNCT__ 6694a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 670a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 671a30f8f8cSSatish Balay { 672a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 673a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 674a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 675a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 676a30f8f8cSSatish Balay int *row,*col,other_disassembled; 677a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 678a30f8f8cSSatish Balay MatScalar *val; 679a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 680a30f8f8cSSatish Balay 681a30f8f8cSSatish Balay PetscFunctionBegin; 682a30f8f8cSSatish Balay 683a30f8f8cSSatish Balay if (!baij->donotstash) { 684a30f8f8cSSatish Balay while (1) { 685a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 686a30f8f8cSSatish Balay /* 68756faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 68856faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 689a30f8f8cSSatish Balay */ 690a30f8f8cSSatish Balay if (!flg) break; 691a30f8f8cSSatish Balay 692a30f8f8cSSatish Balay for (i=0; i<n;) { 693a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 694a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 695a30f8f8cSSatish Balay if (j < n) ncols = j-i; 696a30f8f8cSSatish Balay else ncols = n-i; 697a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 698a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 699a30f8f8cSSatish Balay i = j; 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 703a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 704a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 705a30f8f8cSSatish Balay restore the original flags */ 706a30f8f8cSSatish Balay r1 = baij->roworiented; 707a30f8f8cSSatish Balay r2 = a->roworiented; 708a30f8f8cSSatish Balay r3 = b->roworiented; 709a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 710a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 711a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 712a30f8f8cSSatish Balay while (1) { 713a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 714a30f8f8cSSatish Balay if (!flg) break; 715a30f8f8cSSatish Balay 716a30f8f8cSSatish Balay for (i=0; i<n;) { 717a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 718a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 719a30f8f8cSSatish Balay if (j < n) ncols = j-i; 720a30f8f8cSSatish Balay else ncols = n-i; 721a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 722a30f8f8cSSatish Balay i = j; 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 726a30f8f8cSSatish Balay baij->roworiented = r1; 727a30f8f8cSSatish Balay a->roworiented = r2; 728a30f8f8cSSatish Balay b->roworiented = r3; 729a30f8f8cSSatish Balay } 730a30f8f8cSSatish Balay 731a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 732a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 735a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 736a30f8f8cSSatish Balay /* 737a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 738a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 739a30f8f8cSSatish Balay */ 740a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 741a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 742a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 743c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 74840781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 749a30f8f8cSSatish Balay } 750a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 751a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 752a30f8f8cSSatish Balay 753a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 754a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 755f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 756a30f8f8cSSatish Balay baij->ht_total_ct = 0; 757a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 758a30f8f8cSSatish Balay } 759a30f8f8cSSatish Balay #endif 760a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 761c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 762a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 763a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 764a30f8f8cSSatish Balay } 765a30f8f8cSSatish Balay 766a30f8f8cSSatish Balay if (baij->rowvalues) { 767a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 768a30f8f8cSSatish Balay baij->rowvalues = 0; 769a30f8f8cSSatish Balay } 7705222a1afSHong Zhang 771a30f8f8cSSatish Balay PetscFunctionReturn(0); 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay 7744a2ae208SSatish Balay #undef __FUNCT__ 7754a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 776b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 777a30f8f8cSSatish Balay { 778a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 779fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 780a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 781b0a32e0cSBarry Smith PetscViewer sviewer; 782f3ef73ceSBarry Smith PetscViewerFormat format; 783a30f8f8cSSatish Balay 784a30f8f8cSSatish Balay PetscFunctionBegin; 785b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 786fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 787a30f8f8cSSatish Balay if (isascii) { 788b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 789456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 790a30f8f8cSSatish Balay MatInfo info; 791a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 792a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 793b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 794b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 795a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 796a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 797b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 798a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 799b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 800b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 801a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 802a30f8f8cSSatish Balay PetscFunctionReturn(0); 803fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 804b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 805a30f8f8cSSatish Balay PetscFunctionReturn(0); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay } 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay if (isdraw) { 810b0a32e0cSBarry Smith PetscDraw draw; 811a30f8f8cSSatish Balay PetscTruth isnull; 812b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 813b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 814a30f8f8cSSatish Balay } 815a30f8f8cSSatish Balay 816a30f8f8cSSatish Balay if (size == 1) { 817e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 818a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 819a30f8f8cSSatish Balay } else { 820a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 821a30f8f8cSSatish Balay Mat A; 82265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 82365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 824b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 825a30f8f8cSSatish Balay MatScalar *a; 826a30f8f8cSSatish Balay 827a30f8f8cSSatish Balay if (!rank) { 828bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 829a30f8f8cSSatish Balay } else { 830f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 831a30f8f8cSSatish Balay } 832b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 833a30f8f8cSSatish Balay 834a30f8f8cSSatish Balay /* copy over the A part */ 83565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 836a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 83782502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 838a30f8f8cSSatish Balay 839a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 840a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 841a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 842a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 843a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 844a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 845a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 846a30f8f8cSSatish Balay col++; a += bs; 847a30f8f8cSSatish Balay } 848a30f8f8cSSatish Balay } 849a30f8f8cSSatish Balay } 850a30f8f8cSSatish Balay /* copy over the B part */ 85165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 85265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 853a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 854a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 855a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 856a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 857a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 858a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 859a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 860a30f8f8cSSatish Balay col++; a += bs; 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay } 864a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 865a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 866a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 867a30f8f8cSSatish Balay /* 868a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 869b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 870a30f8f8cSSatish Balay */ 871b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 87265d70643SHong Zhang if (!rank) { 873e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 874a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 875a30f8f8cSSatish Balay } 876b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 877a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay PetscFunctionReturn(0); 880a30f8f8cSSatish Balay } 881a30f8f8cSSatish Balay 8824a2ae208SSatish Balay #undef __FUNCT__ 8834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 884b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 885a30f8f8cSSatish Balay { 886a30f8f8cSSatish Balay int ierr; 887a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 888a30f8f8cSSatish Balay 889a30f8f8cSSatish Balay PetscFunctionBegin; 890b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 891fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 892b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 893fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 894a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 895a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 896a30f8f8cSSatish Balay } else { 89729bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 898a30f8f8cSSatish Balay } 899a30f8f8cSSatish Balay PetscFunctionReturn(0); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 9024a2ae208SSatish Balay #undef __FUNCT__ 9034a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 904a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 905a30f8f8cSSatish Balay { 906a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 907a30f8f8cSSatish Balay int ierr; 908a30f8f8cSSatish Balay 909a30f8f8cSSatish Balay PetscFunctionBegin; 910a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 911b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 912a30f8f8cSSatish Balay #endif 913a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 914a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 915a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 916a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 917a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 918a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 919a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 920a30f8f8cSSatish Balay #else 921a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 922a30f8f8cSSatish Balay #endif 923a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 924a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 925a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 92640781036SHong Zhang if (baij->slvec0) { 92740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 92840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 92940781036SHong Zhang } 93040781036SHong Zhang if (baij->slvec1) { 93140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 93240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 93340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 93440781036SHong Zhang } 93540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 937a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 938a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 939a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 940a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 941a30f8f8cSSatish Balay #endif 942a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 943a30f8f8cSSatish Balay PetscFunctionReturn(0); 944a30f8f8cSSatish Balay } 945a30f8f8cSSatish Balay 9464a2ae208SSatish Balay #undef __FUNCT__ 947a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 948a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 949a9d4b620SHong Zhang { 950a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 9514024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 952a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 953a9d4b620SHong Zhang 954a9d4b620SHong Zhang PetscFunctionBegin; 955a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 956a9d4b620SHong Zhang if (nt != A->n) { 957a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 958a9d4b620SHong Zhang } 959a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 960a9d4b620SHong Zhang if (nt != A->m) { 961a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 962a9d4b620SHong Zhang } 963a9d4b620SHong Zhang 964a9d4b620SHong Zhang /* diagonal part */ 965a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 966a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang /* subdiagonal part */ 969a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 970a9d4b620SHong Zhang 971a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 972b1d4fb26SBarry Smith ierr = VecGetArrayFast(a->slvec0,&from);CHKERRQ(ierr); 973b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 974a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 975b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(a->slvec0,&from);CHKERRQ(ierr); 976a9d4b620SHong Zhang 977a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 978b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 979a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 980a9d4b620SHong Zhang 981a9d4b620SHong Zhang /* supperdiagonal part */ 982a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 983a9d4b620SHong Zhang 984a9d4b620SHong Zhang PetscFunctionReturn(0); 985a9d4b620SHong Zhang } 986a9d4b620SHong Zhang 987a9d4b620SHong Zhang #undef __FUNCT__ 98840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 98940781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 990a30f8f8cSSatish Balay { 991a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 992a30f8f8cSSatish Balay int ierr,nt; 993a30f8f8cSSatish Balay 994a30f8f8cSSatish Balay PetscFunctionBegin; 995a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 996b5df2d14SHong Zhang if (nt != A->n) { 99729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1000b5df2d14SHong Zhang if (nt != A->m) { 100129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1002a30f8f8cSSatish Balay } 100365d70643SHong Zhang 1004b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1005b941877fSHong Zhang /* do diagonal part */ 1006b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1007b941877fSHong Zhang /* do supperdiagonal part */ 1008b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1009b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1010b941877fSHong Zhang /* do subdiagonal part */ 1011b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1012b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1013b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 101465d70643SHong Zhang 1015a30f8f8cSSatish Balay PetscFunctionReturn(0); 1016a30f8f8cSSatish Balay } 1017a30f8f8cSSatish Balay 10184a2ae208SSatish Balay #undef __FUNCT__ 10194a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1020a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1021a30f8f8cSSatish Balay { 1022de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1023a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 1024a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1025a9d4b620SHong Zhang 1026a9d4b620SHong Zhang PetscFunctionBegin; 1027a9d4b620SHong Zhang /* 102856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 102956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1030a9d4b620SHong Zhang */ 1031a9d4b620SHong Zhang /* diagonal part */ 1032a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1033a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1034a9d4b620SHong Zhang 1035a9d4b620SHong Zhang /* subdiagonal part */ 1036a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1037a9d4b620SHong Zhang 1038a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 1039b1d4fb26SBarry Smith ierr = VecGetArrayFast(a->slvec0,&from);CHKERRQ(ierr); 1040b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 1041a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1042b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(a->slvec0,&from);CHKERRQ(ierr); 1043a9d4b620SHong Zhang 1044a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1045b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 1046a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1047a9d4b620SHong Zhang 1048a9d4b620SHong Zhang /* supperdiagonal part */ 1049a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1050a9d4b620SHong Zhang 1051a9d4b620SHong Zhang PetscFunctionReturn(0); 1052a9d4b620SHong Zhang } 1053a9d4b620SHong Zhang 1054a9d4b620SHong Zhang #undef __FUNCT__ 1055a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1056a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1057a9d4b620SHong Zhang { 1058a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1059aa482183SHong Zhang int ierr; 1060a30f8f8cSSatish Balay 1061a30f8f8cSSatish Balay PetscFunctionBegin; 1062b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1063b941877fSHong Zhang /* do diagonal part */ 1064b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1065b941877fSHong Zhang /* do supperdiagonal part */ 1066b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1067de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1068de8b6608SHong Zhang 1069b941877fSHong Zhang /* do subdiagonal part */ 1070a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1071a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1072a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1073aa482183SHong Zhang 1074a30f8f8cSSatish Balay PetscFunctionReturn(0); 1075a30f8f8cSSatish Balay } 1076a30f8f8cSSatish Balay 10774a2ae208SSatish Balay #undef __FUNCT__ 10784a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1079a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1080a30f8f8cSSatish Balay { 10815a7c0312SHong Zhang int ierr; 10825a7c0312SHong Zhang 1083a30f8f8cSSatish Balay PetscFunctionBegin; 10845a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10855a7c0312SHong Zhang PetscFunctionReturn(0); 1086a30f8f8cSSatish Balay } 1087a30f8f8cSSatish Balay 10884a2ae208SSatish Balay #undef __FUNCT__ 10894a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1090a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1091a30f8f8cSSatish Balay { 10925a7c0312SHong Zhang int ierr; 10935a7c0312SHong Zhang 1094a30f8f8cSSatish Balay PetscFunctionBegin; 10955a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10965a7c0312SHong Zhang PetscFunctionReturn(0); 1097a30f8f8cSSatish Balay } 1098a30f8f8cSSatish Balay 1099a30f8f8cSSatish Balay /* 1100a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1101a30f8f8cSSatish Balay diagonal block 1102a30f8f8cSSatish Balay */ 11034a2ae208SSatish Balay #undef __FUNCT__ 11044a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1105a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1106a30f8f8cSSatish Balay { 1107a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1108a30f8f8cSSatish Balay int ierr; 1109a30f8f8cSSatish Balay 1110a30f8f8cSSatish Balay PetscFunctionBegin; 111129bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1112a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1113a30f8f8cSSatish Balay PetscFunctionReturn(0); 1114a30f8f8cSSatish Balay } 1115a30f8f8cSSatish Balay 11164a2ae208SSatish Balay #undef __FUNCT__ 11174a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1118268466fbSBarry Smith int MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1119a30f8f8cSSatish Balay { 1120a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1121a30f8f8cSSatish Balay int ierr; 1122a30f8f8cSSatish Balay 1123a30f8f8cSSatish Balay PetscFunctionBegin; 1124a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1125a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1126a30f8f8cSSatish Balay PetscFunctionReturn(0); 1127a30f8f8cSSatish Balay } 1128a30f8f8cSSatish Balay 11294a2ae208SSatish Balay #undef __FUNCT__ 11304a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 113187828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1132a30f8f8cSSatish Balay { 1133a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 113487828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1135a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1136a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1137a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1138a30f8f8cSSatish Balay 1139a30f8f8cSSatish Balay PetscFunctionBegin; 114029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1141a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1142a30f8f8cSSatish Balay 1143a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1144a30f8f8cSSatish Balay /* 1145a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1146a30f8f8cSSatish Balay */ 1147a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1148a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1149a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1150a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1151a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1152a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1153a30f8f8cSSatish Balay } 115487828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1155a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1156a30f8f8cSSatish Balay } 1157a30f8f8cSSatish Balay 115829bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1159a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1160a30f8f8cSSatish Balay 1161a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1162a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1163a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1164a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1165a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1166a30f8f8cSSatish Balay nztot = nzA + nzB; 1167a30f8f8cSSatish Balay 1168a30f8f8cSSatish Balay cmap = mat->garray; 1169a30f8f8cSSatish Balay if (v || idx) { 1170a30f8f8cSSatish Balay if (nztot) { 1171a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1172a30f8f8cSSatish Balay int imark = -1; 1173a30f8f8cSSatish Balay if (v) { 1174a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1175a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1176a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1177a30f8f8cSSatish Balay else break; 1178a30f8f8cSSatish Balay } 1179a30f8f8cSSatish Balay imark = i; 1180a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1181a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1182a30f8f8cSSatish Balay } 1183a30f8f8cSSatish Balay if (idx) { 1184a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1185a30f8f8cSSatish Balay if (imark > -1) { 1186a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1187a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1188a30f8f8cSSatish Balay } 1189a30f8f8cSSatish Balay } else { 1190a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1191a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1192a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1193a30f8f8cSSatish Balay else break; 1194a30f8f8cSSatish Balay } 1195a30f8f8cSSatish Balay imark = i; 1196a30f8f8cSSatish Balay } 1197a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1198a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1199a30f8f8cSSatish Balay } 1200a30f8f8cSSatish Balay } else { 1201a30f8f8cSSatish Balay if (idx) *idx = 0; 1202a30f8f8cSSatish Balay if (v) *v = 0; 1203a30f8f8cSSatish Balay } 1204a30f8f8cSSatish Balay } 1205a30f8f8cSSatish Balay *nz = nztot; 1206a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1207a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1208a30f8f8cSSatish Balay PetscFunctionReturn(0); 1209a30f8f8cSSatish Balay } 1210a30f8f8cSSatish Balay 12114a2ae208SSatish Balay #undef __FUNCT__ 12124a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 121387828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1214a30f8f8cSSatish Balay { 1215a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1216a30f8f8cSSatish Balay 1217a30f8f8cSSatish Balay PetscFunctionBegin; 1218a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 121929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1220a30f8f8cSSatish Balay } 1221a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1222a30f8f8cSSatish Balay PetscFunctionReturn(0); 1223a30f8f8cSSatish Balay } 1224a30f8f8cSSatish Balay 12254a2ae208SSatish Balay #undef __FUNCT__ 12264a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1227a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1228a30f8f8cSSatish Balay { 1229a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1230a30f8f8cSSatish Balay 1231a30f8f8cSSatish Balay PetscFunctionBegin; 1232a30f8f8cSSatish Balay *bs = baij->bs; 1233a30f8f8cSSatish Balay PetscFunctionReturn(0); 1234a30f8f8cSSatish Balay } 1235a30f8f8cSSatish Balay 12364a2ae208SSatish Balay #undef __FUNCT__ 12374a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1238a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1239a30f8f8cSSatish Balay { 1240a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1241a30f8f8cSSatish Balay int ierr; 1242a30f8f8cSSatish Balay 1243a30f8f8cSSatish Balay PetscFunctionBegin; 1244a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1245a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1246a30f8f8cSSatish Balay PetscFunctionReturn(0); 1247a30f8f8cSSatish Balay } 1248a30f8f8cSSatish Balay 12494a2ae208SSatish Balay #undef __FUNCT__ 12504a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1251a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1252a30f8f8cSSatish Balay { 1253a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1254a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1255a30f8f8cSSatish Balay int ierr; 1256a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1257a30f8f8cSSatish Balay 1258a30f8f8cSSatish Balay PetscFunctionBegin; 1259f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1260a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1261a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1262a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1263a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1264a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1265a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1266a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1267a30f8f8cSSatish Balay info->nz_used = isend[0]; 1268a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1269a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1270a30f8f8cSSatish Balay info->memory = isend[3]; 1271a30f8f8cSSatish Balay info->mallocs = isend[4]; 1272a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1273d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1274a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1275a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1276a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1277a30f8f8cSSatish Balay info->memory = irecv[3]; 1278a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1279a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1280d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1281a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1282a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1283a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1284a30f8f8cSSatish Balay info->memory = irecv[3]; 1285a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1286a30f8f8cSSatish Balay } else { 128729bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1288a30f8f8cSSatish Balay } 1289f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1290f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1291f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1292f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1293a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1294a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1295a30f8f8cSSatish Balay info->factor_mallocs = 0; 1296a30f8f8cSSatish Balay PetscFunctionReturn(0); 1297a30f8f8cSSatish Balay } 1298a30f8f8cSSatish Balay 12994a2ae208SSatish Balay #undef __FUNCT__ 13004a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1301a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1302a30f8f8cSSatish Balay { 1303a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1304a30f8f8cSSatish Balay int ierr; 1305a30f8f8cSSatish Balay 1306a30f8f8cSSatish Balay PetscFunctionBegin; 1307e98b92d7SKris Buschelman switch (op) { 1308e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1309e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1310e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1311e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1312e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1313e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1314e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1315a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1316a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1317e98b92d7SKris Buschelman break; 1318e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1319a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1320a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1321a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1322e98b92d7SKris Buschelman break; 1323e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1324e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1325e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1326b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1327e98b92d7SKris Buschelman break; 1328e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1329a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1330a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1331a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1332e98b92d7SKris Buschelman break; 1333e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1334a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1335e98b92d7SKris Buschelman break; 1336e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 133729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1338e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1339a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1340e98b92d7SKris Buschelman break; 13419a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13429a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13439a4540c5SBarry Smith case MAT_HERMITIAN: 13449a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 134577e54ba9SKris Buschelman case MAT_SYMMETRIC: 134677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13479a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13489a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13499a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 135077e54ba9SKris Buschelman break; 1351e98b92d7SKris Buschelman default: 135229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1353a30f8f8cSSatish Balay } 1354a30f8f8cSSatish Balay PetscFunctionReturn(0); 1355a30f8f8cSSatish Balay } 1356a30f8f8cSSatish Balay 13574a2ae208SSatish Balay #undef __FUNCT__ 13588115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 13598115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1360a30f8f8cSSatish Balay { 13618115998fSBarry Smith int ierr; 1362a30f8f8cSSatish Balay PetscFunctionBegin; 1363999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13648115998fSBarry Smith PetscFunctionReturn(0); 1365a30f8f8cSSatish Balay } 1366a30f8f8cSSatish Balay 13674a2ae208SSatish Balay #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1369a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1370a30f8f8cSSatish Balay { 1371a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1372a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1373a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1374a30f8f8cSSatish Balay 1375a30f8f8cSSatish Balay PetscFunctionBegin; 1376a30f8f8cSSatish Balay if (ll != rr) { 137729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1378a30f8f8cSSatish Balay } 1379a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1380a30f8f8cSSatish Balay if (rr) { 1381a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 138229bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1383a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1384a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1385a30f8f8cSSatish Balay /*} if (ll) { */ 1386a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 138729bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1388a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1389a30f8f8cSSatish Balay /* } */ 1390a30f8f8cSSatish Balay /* scale the diagonal block */ 1391a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1392a30f8f8cSSatish Balay 1393a30f8f8cSSatish Balay /* if (rr) { */ 1394a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1395a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1397a30f8f8cSSatish Balay } 1398a30f8f8cSSatish Balay 1399a30f8f8cSSatish Balay PetscFunctionReturn(0); 1400a30f8f8cSSatish Balay } 1401a30f8f8cSSatish Balay 14024a2ae208SSatish Balay #undef __FUNCT__ 14034a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1404268466fbSBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1405a30f8f8cSSatish Balay { 1406a30f8f8cSSatish Balay PetscFunctionBegin; 1407c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1408a30f8f8cSSatish Balay } 1409a30f8f8cSSatish Balay 14104a2ae208SSatish Balay #undef __FUNCT__ 14114a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1412a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1413a30f8f8cSSatish Balay { 1414a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1415a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1416a30f8f8cSSatish Balay static int called = 0; 1417a30f8f8cSSatish Balay int ierr; 1418a30f8f8cSSatish Balay 1419a30f8f8cSSatish Balay PetscFunctionBegin; 1420a30f8f8cSSatish Balay if (!a->rank) { 1421a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1422a30f8f8cSSatish Balay } 1423a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1424a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1425a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1426a30f8f8cSSatish Balay PetscFunctionReturn(0); 1427a30f8f8cSSatish Balay } 1428a30f8f8cSSatish Balay 14294a2ae208SSatish Balay #undef __FUNCT__ 14304a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1431a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1432a30f8f8cSSatish Balay { 1433f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1434a30f8f8cSSatish Balay int ierr; 1435a30f8f8cSSatish Balay 1436a30f8f8cSSatish Balay PetscFunctionBegin; 1437a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1438a30f8f8cSSatish Balay PetscFunctionReturn(0); 1439a30f8f8cSSatish Balay } 1440a30f8f8cSSatish Balay 1441a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1442a30f8f8cSSatish Balay 14434a2ae208SSatish Balay #undef __FUNCT__ 14444a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1445a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1446a30f8f8cSSatish Balay { 1447a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1448a30f8f8cSSatish Balay Mat a,b,c,d; 1449a30f8f8cSSatish Balay PetscTruth flg; 1450a30f8f8cSSatish Balay int ierr; 1451a30f8f8cSSatish Balay 1452a30f8f8cSSatish Balay PetscFunctionBegin; 1453a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1454a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1455a30f8f8cSSatish Balay 1456a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1457a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1458a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1459a30f8f8cSSatish Balay } 1460a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1461a30f8f8cSSatish Balay PetscFunctionReturn(0); 1462a30f8f8cSSatish Balay } 1463a30f8f8cSSatish Balay 14644a2ae208SSatish Balay #undef __FUNCT__ 14654a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1466273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1467273d9f13SBarry Smith { 1468273d9f13SBarry Smith int ierr; 1469273d9f13SBarry Smith 1470273d9f13SBarry Smith PetscFunctionBegin; 1471273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1472273d9f13SBarry Smith PetscFunctionReturn(0); 1473273d9f13SBarry Smith } 1474a5e6ed63SBarry Smith 1475a5e6ed63SBarry Smith #undef __FUNCT__ 1476a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 1477a5e6ed63SBarry Smith int MatGetSubMatrices_MPISBAIJ(Mat A,int n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1478a5e6ed63SBarry Smith { 1479a5e6ed63SBarry Smith int i,ierr; 1480a5e6ed63SBarry Smith PetscTruth flg; 1481a5e6ed63SBarry Smith 1482a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1483a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1484a5e6ed63SBarry Smith if (!flg) { 1485a5e6ed63SBarry Smith SETERRQ(1,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1486a5e6ed63SBarry Smith } 1487a5e6ed63SBarry Smith } 1488a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1489a5e6ed63SBarry Smith PetscFunctionReturn(0); 1490a5e6ed63SBarry Smith } 1491a5e6ed63SBarry Smith 1492a5e6ed63SBarry Smith 1493a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1494a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1495a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1496a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1497a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1498a9d4b620SHong Zhang MatMult_MPISBAIJ, 149997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1500a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1501a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 150597304618SKris Buschelman /*10*/ 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 15082798e883SHong Zhang MatRelax_MPISBAIJ, 1509a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 151097304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1511a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1512a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1513a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1514a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 151597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1516a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1519a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 152097304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 152597304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1526b5df2d14SHong Zhang 0, 1527a30f8f8cSSatish Balay 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay 0, 153097304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay 0, 153597304618SKris Buschelman /*40*/ 0, 1536a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1537d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1538a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1539a30f8f8cSSatish Balay 0, 154097304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1541a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay 0, 154597304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1546a30f8f8cSSatish Balay 0, 1547a30f8f8cSSatish Balay 0, 1548a30f8f8cSSatish Balay 0, 1549a30f8f8cSSatish Balay 0, 155097304618SKris Buschelman /*55*/ 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1553a30f8f8cSSatish Balay 0, 1554a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 155597304618SKris Buschelman /*60*/ 0, 1556a30f8f8cSSatish Balay 0, 1557a30f8f8cSSatish Balay 0, 15588a124369SBarry Smith MatGetPetscMaps_Petsc, 155924d5174aSHong Zhang 0, 156097304618SKris Buschelman /*65*/ 0, 156124d5174aSHong Zhang 0, 156224d5174aSHong Zhang 0, 156324d5174aSHong Zhang 0, 156424d5174aSHong Zhang 0, 156597304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 156624d5174aSHong Zhang 0, 156797304618SKris Buschelman 0, 156897304618SKris Buschelman 0, 156997304618SKris Buschelman 0, 157097304618SKris Buschelman /*75*/ 0, 157197304618SKris Buschelman 0, 157297304618SKris Buschelman 0, 157397304618SKris Buschelman 0, 157497304618SKris Buschelman 0, 157597304618SKris Buschelman /*80*/ 0, 157697304618SKris Buschelman 0, 157797304618SKris Buschelman 0, 157897304618SKris Buschelman 0, 157997304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ 158097304618SKris Buschelman }; 1581a30f8f8cSSatish Balay 1582a30f8f8cSSatish Balay 1583a30f8f8cSSatish Balay EXTERN_C_BEGIN 15844a2ae208SSatish Balay #undef __FUNCT__ 15854a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1586a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1587a30f8f8cSSatish Balay { 1588a30f8f8cSSatish Balay PetscFunctionBegin; 1589a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1590a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1591a30f8f8cSSatish Balay PetscFunctionReturn(0); 1592a30f8f8cSSatish Balay } 1593a30f8f8cSSatish Balay EXTERN_C_END 1594a30f8f8cSSatish Balay 1595273d9f13SBarry Smith EXTERN_C_BEGIN 15964a2ae208SSatish Balay #undef __FUNCT__ 1597a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1598a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1599a23d5eceSKris Buschelman { 1600a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1601a23d5eceSKris Buschelman int ierr,i,mbs,Mbs; 1602a23d5eceSKris Buschelman 1603a23d5eceSKris Buschelman PetscFunctionBegin; 1604a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1605a23d5eceSKris Buschelman 1606a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1607a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1608a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1609a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1610a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1611a23d5eceSKris Buschelman if (d_nnz) { 1612a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1613a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1614a23d5eceSKris Buschelman } 1615a23d5eceSKris Buschelman } 1616a23d5eceSKris Buschelman if (o_nnz) { 1617a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1618a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1619a23d5eceSKris Buschelman } 1620a23d5eceSKris Buschelman } 1621a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1622a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1623a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1624a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1625a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1626a23d5eceSKris Buschelman 1627a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1628a23d5eceSKris Buschelman mbs = B->m/bs; 1629a23d5eceSKris Buschelman Mbs = B->M/bs; 1630a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1631a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1632a23d5eceSKris Buschelman } 1633a23d5eceSKris Buschelman 1634a23d5eceSKris Buschelman b->bs = bs; 1635a23d5eceSKris Buschelman b->bs2 = bs*bs; 1636a23d5eceSKris Buschelman b->mbs = mbs; 1637a23d5eceSKris Buschelman b->nbs = mbs; 1638a23d5eceSKris Buschelman b->Mbs = Mbs; 1639a23d5eceSKris Buschelman b->Nbs = Mbs; 1640a23d5eceSKris Buschelman 1641a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1642a23d5eceSKris Buschelman b->rowners[0] = 0; 1643a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1644a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1645a23d5eceSKris Buschelman } 1646a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1647a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1648a23d5eceSKris Buschelman b->cstart = b->rstart; 1649a23d5eceSKris Buschelman b->cend = b->rend; 1650a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1651a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1652a23d5eceSKris Buschelman } 1653a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1654a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1655a23d5eceSKris Buschelman 1656a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1657a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1658a23d5eceSKris Buschelman 16599c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 16609c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1661c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 16629c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 16639c097c71SKris Buschelman 16649c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 16654aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1666589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 16679c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1668a23d5eceSKris Buschelman 1669a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1670a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1671a23d5eceSKris Buschelman 1672a23d5eceSKris Buschelman PetscFunctionReturn(0); 1673a23d5eceSKris Buschelman } 1674a23d5eceSKris Buschelman EXTERN_C_END 1675a23d5eceSKris Buschelman 16760bad9183SKris Buschelman /*MC 1677fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16780bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16790bad9183SKris Buschelman 16800bad9183SKris Buschelman Options Database Keys: 16810bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16820bad9183SKris Buschelman 16830bad9183SKris Buschelman Level: beginner 16840bad9183SKris Buschelman 16850bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16860bad9183SKris Buschelman M*/ 16870bad9183SKris Buschelman 1688a23d5eceSKris Buschelman EXTERN_C_BEGIN 1689a23d5eceSKris Buschelman #undef __FUNCT__ 16904a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1691b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1692b5df2d14SHong Zhang { 1693b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1694ca54ac64SHong Zhang int ierr; 1695b5df2d14SHong Zhang PetscTruth flg; 1696b5df2d14SHong Zhang 1697b5df2d14SHong Zhang PetscFunctionBegin; 1698b5df2d14SHong Zhang 1699b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1700b0a32e0cSBarry Smith B->data = (void*)b; 1701b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1702b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1703b5df2d14SHong Zhang 1704b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1705b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1706b5df2d14SHong Zhang B->mapping = 0; 1707b5df2d14SHong Zhang B->factor = 0; 1708b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1711b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1712b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1713b5df2d14SHong Zhang 1714b5df2d14SHong Zhang /* build local table of row and column ownerships */ 171582502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1716273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1717273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1718b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1719b5df2d14SHong Zhang 1720b5df2d14SHong Zhang /* build cache for off array entries formed */ 1721b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1722b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1723b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1724b5df2d14SHong Zhang b->garray = PETSC_NULL; 1725b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1726b5df2d14SHong Zhang 1727f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1728b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 172964a35ccbSBarry Smith b->setvalueslen = 0; 1730b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1731b5df2d14SHong Zhang #endif 1732b5df2d14SHong Zhang 1733b5df2d14SHong Zhang /* stuff used in block assembly */ 1734b5df2d14SHong Zhang b->barray = 0; 1735b5df2d14SHong Zhang 1736b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1737b5df2d14SHong Zhang b->lvec = 0; 1738b5df2d14SHong Zhang b->Mvctx = 0; 173940781036SHong Zhang b->slvec0 = 0; 174040781036SHong Zhang b->slvec0b = 0; 174140781036SHong Zhang b->slvec1 = 0; 174240781036SHong Zhang b->slvec1a = 0; 174340781036SHong Zhang b->slvec1b = 0; 174440781036SHong Zhang b->sMvctx = 0; 1745b5df2d14SHong Zhang 1746b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1747b5df2d14SHong Zhang b->rowindices = 0; 1748b5df2d14SHong Zhang b->rowvalues = 0; 1749b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1750b5df2d14SHong Zhang 1751b5df2d14SHong Zhang /* hash table stuff */ 1752b5df2d14SHong Zhang b->ht = 0; 1753b5df2d14SHong Zhang b->hd = 0; 1754b5df2d14SHong Zhang b->ht_size = 0; 1755b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1756b5df2d14SHong Zhang b->ht_fact = 0; 1757b5df2d14SHong Zhang b->ht_total_ct = 0; 1758b5df2d14SHong Zhang b->ht_insert_ct = 0; 1759b5df2d14SHong Zhang 1760e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1761b5df2d14SHong Zhang if (flg) { 1762f6275e2eSBarry Smith PetscReal fact = 1.39; 1763b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1764e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1765b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1766b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1767b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1768b5df2d14SHong Zhang } 1769b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1770b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1771b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1772b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1773b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1774b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1775b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1776b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1777b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1778a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1779a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1780a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1781b5df2d14SHong Zhang PetscFunctionReturn(0); 1782b5df2d14SHong Zhang } 1783273d9f13SBarry Smith EXTERN_C_END 1784b5df2d14SHong Zhang 1785209238afSKris Buschelman /*MC 1786002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1787209238afSKris Buschelman 1788209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1789209238afSKris Buschelman and MATMPISBAIJ otherwise. 1790209238afSKris Buschelman 1791209238afSKris Buschelman Options Database Keys: 1792209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1793209238afSKris Buschelman 1794209238afSKris Buschelman Level: beginner 1795209238afSKris Buschelman 1796209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1797209238afSKris Buschelman M*/ 1798209238afSKris Buschelman 1799209238afSKris Buschelman EXTERN_C_BEGIN 1800209238afSKris Buschelman #undef __FUNCT__ 1801209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1802209238afSKris Buschelman int MatCreate_SBAIJ(Mat A) { 1803209238afSKris Buschelman int ierr,size; 1804209238afSKris Buschelman 1805209238afSKris Buschelman PetscFunctionBegin; 1806209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1807209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1808209238afSKris Buschelman if (size == 1) { 1809209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1810209238afSKris Buschelman } else { 1811209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1812209238afSKris Buschelman } 1813209238afSKris Buschelman PetscFunctionReturn(0); 1814209238afSKris Buschelman } 1815209238afSKris Buschelman EXTERN_C_END 1816209238afSKris Buschelman 18174a2ae208SSatish Balay #undef __FUNCT__ 18184a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1819b5df2d14SHong Zhang /*@C 1820b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1821b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1822b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1823b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1824b5df2d14SHong Zhang 1825b5df2d14SHong Zhang Collective on Mat 1826b5df2d14SHong Zhang 1827b5df2d14SHong Zhang Input Parameters: 1828b5df2d14SHong Zhang + A - the matrix 1829b5df2d14SHong Zhang . bs - size of blockk 1830b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1831b5df2d14SHong Zhang submatrix (same for all local rows) 1832b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18336d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18346d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18356d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1836b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1837b5df2d14SHong Zhang submatrix (same for all local rows). 1838b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1839b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1840b5df2d14SHong Zhang each block row) or PETSC_NULL. 1841b5df2d14SHong Zhang 1842b5df2d14SHong Zhang 1843b5df2d14SHong Zhang Options Database Keys: 1844b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1845b5df2d14SHong Zhang block calculations (much slower) 1846b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang Notes: 1849b5df2d14SHong Zhang 1850b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1851b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang Storage Information: 1854b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1855b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1856b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1857b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1858b5df2d14SHong Zhang 1859b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1860b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1861b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1862b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1863b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1866b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang .vb 1869b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1870b5df2d14SHong Zhang ------------------- 1871b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1872b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1873b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1874b5df2d14SHong Zhang ------------------- 1875b5df2d14SHong Zhang .ve 1876b5df2d14SHong Zhang 1877b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1878b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18796d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18806d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1881b5df2d14SHong Zhang 18826d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18836d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1884b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1885b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1886b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1887b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1888b5df2d14SHong Zhang matrices. 1889b5df2d14SHong Zhang 1890b5df2d14SHong Zhang Level: intermediate 1891b5df2d14SHong Zhang 1892b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1893b5df2d14SHong Zhang 1894b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1895b5df2d14SHong Zhang @*/ 1896ca01db9bSBarry Smith int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 1897b5df2d14SHong Zhang { 1898ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[],int,const int[]); 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang PetscFunctionBegin; 1901a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1902a23d5eceSKris Buschelman if (f) { 1903a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1904b5df2d14SHong Zhang } 1905b5df2d14SHong Zhang PetscFunctionReturn(0); 1906b5df2d14SHong Zhang } 1907b5df2d14SHong Zhang 19084a2ae208SSatish Balay #undef __FUNCT__ 19094a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1910a30f8f8cSSatish Balay /*@C 1911a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1912a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1913a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1914a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1915a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1916a30f8f8cSSatish Balay 1917a30f8f8cSSatish Balay Collective on MPI_Comm 1918a30f8f8cSSatish Balay 1919a30f8f8cSSatish Balay Input Parameters: 1920a30f8f8cSSatish Balay + comm - MPI communicator 1921a30f8f8cSSatish Balay . bs - size of blockk 1922a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1923a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1924a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1925a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1926a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1927a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1928a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1929a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1930a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1931a30f8f8cSSatish Balay submatrix (same for all local rows) 1932a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19336d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19346d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19356d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1936a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1937a30f8f8cSSatish Balay submatrix (same for all local rows). 1938a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1939a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1940a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1941a30f8f8cSSatish Balay 1942a30f8f8cSSatish Balay Output Parameter: 1943a30f8f8cSSatish Balay . A - the matrix 1944a30f8f8cSSatish Balay 1945a30f8f8cSSatish Balay Options Database Keys: 1946a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1947a30f8f8cSSatish Balay block calculations (much slower) 1948a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1949a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1950a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1951a30f8f8cSSatish Balay 1952a30f8f8cSSatish Balay Notes: 1953a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1954a30f8f8cSSatish Balay (possibly both). 1955a30f8f8cSSatish Balay 1956a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1957a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay Storage Information: 1960a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1961a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1962a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1963a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1964a30f8f8cSSatish Balay 1965a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1966a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1967a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1968a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1969a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1972a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1973a30f8f8cSSatish Balay 1974a30f8f8cSSatish Balay .vb 1975a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1976a30f8f8cSSatish Balay ------------------- 1977a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1978a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1979a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1980a30f8f8cSSatish Balay ------------------- 1981a30f8f8cSSatish Balay .ve 1982a30f8f8cSSatish Balay 1983a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1984a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19856d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19866d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1987a30f8f8cSSatish Balay 19886d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19896d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1990a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1991a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1992a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1993a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1994a30f8f8cSSatish Balay matrices. 1995a30f8f8cSSatish Balay 1996a30f8f8cSSatish Balay Level: intermediate 1997a30f8f8cSSatish Balay 1998a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1999a30f8f8cSSatish Balay 2000a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2001a30f8f8cSSatish Balay @*/ 2002a30f8f8cSSatish Balay 2003ca01db9bSBarry Smith int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 2004a30f8f8cSSatish Balay { 2005273d9f13SBarry Smith int ierr,size; 2006a30f8f8cSSatish Balay 2007a30f8f8cSSatish Balay PetscFunctionBegin; 2008b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2009273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2010273d9f13SBarry Smith if (size > 1) { 2011b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2012b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2013273d9f13SBarry Smith } else { 2014273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2015273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2016273d9f13SBarry Smith } 2017a30f8f8cSSatish Balay PetscFunctionReturn(0); 2018a30f8f8cSSatish Balay } 2019a30f8f8cSSatish Balay 2020a30f8f8cSSatish Balay 20214a2ae208SSatish Balay #undef __FUNCT__ 20224a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 2023a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2024a30f8f8cSSatish Balay { 2025a30f8f8cSSatish Balay Mat mat; 2026a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2027387bc808SHong Zhang int ierr,len=0,nt,bs=oldmat->bs,mbs=oldmat->mbs; 2028387bc808SHong Zhang PetscScalar *array; 2029a30f8f8cSSatish Balay 2030a30f8f8cSSatish Balay PetscFunctionBegin; 2031a30f8f8cSSatish Balay *newmat = 0; 2032b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2033*be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20347fff6886SHong Zhang 20357fff6886SHong Zhang /* ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); */ /*-- cause error? */ 203682327fa8SHong Zhang mat->factor = matin->factor; 2037273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 203882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20397fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20407fff6886SHong Zhang 2041b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2042a30f8f8cSSatish Balay a->bs = oldmat->bs; 2043a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2044a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2045a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2046a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2047a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2048a30f8f8cSSatish Balay 2049a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2050a30f8f8cSSatish Balay a->rend = oldmat->rend; 2051a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2052a30f8f8cSSatish Balay a->cend = oldmat->cend; 2053a30f8f8cSSatish Balay a->size = oldmat->size; 2054a30f8f8cSSatish Balay a->rank = oldmat->rank; 2055a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2056a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2057a30f8f8cSSatish Balay a->rowindices = 0; 2058a30f8f8cSSatish Balay a->rowvalues = 0; 2059a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2060a30f8f8cSSatish Balay a->barray = 0; 2061a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2062a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2063a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2064a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2065a30f8f8cSSatish Balay 2066a30f8f8cSSatish Balay /* hash table stuff */ 2067a30f8f8cSSatish Balay a->ht = 0; 2068a30f8f8cSSatish Balay a->hd = 0; 2069a30f8f8cSSatish Balay a->ht_size = 0; 2070a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2071a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2072a30f8f8cSSatish Balay a->ht_total_ct = 0; 2073a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2074a30f8f8cSSatish Balay 2075a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2076a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2077a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2078a30f8f8cSSatish Balay if (oldmat->colmap) { 2079a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2080a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2081a30f8f8cSSatish Balay #else 208282502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2083b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2084a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2085a30f8f8cSSatish Balay #endif 2086a30f8f8cSSatish Balay } else a->colmap = 0; 2087387bc808SHong Zhang 2088a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 208982502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2090b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2091a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2092a30f8f8cSSatish Balay } else a->garray = 0; 2093a30f8f8cSSatish Balay 2094a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2095b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2096a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2097b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 209882327fa8SHong Zhang 209982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2100387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 210182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2102387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2103387bc808SHong Zhang 2104387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 2105387bc808SHong Zhang ierr = VecGetArrayFast(a->slvec1,&array);CHKERRQ(ierr); 2106387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2107387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 2108387bc808SHong Zhang ierr = VecRestoreArrayFast(a->slvec1,&array);CHKERRQ(ierr); 2109387bc808SHong Zhang ierr = VecGetArrayFast(a->slvec0,&array);CHKERRQ(ierr); 2110387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 2111387bc808SHong Zhang ierr = VecRestoreArrayFast(a->slvec0,&array);CHKERRQ(ierr); 2112387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2113387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2114387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2115387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2116387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2117387bc808SHong Zhang 2118387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2119387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2120387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2121387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 212282327fa8SHong Zhang 2123a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2124b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2125a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2126b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2127b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2128a30f8f8cSSatish Balay *newmat = mat; 2129a30f8f8cSSatish Balay PetscFunctionReturn(0); 2130a30f8f8cSSatish Balay } 2131a30f8f8cSSatish Balay 2132a30f8f8cSSatish Balay #include "petscsys.h" 2133a30f8f8cSSatish Balay 21344a2ae208SSatish Balay #undef __FUNCT__ 21354a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 21368e9aea5cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2137a30f8f8cSSatish Balay { 2138a30f8f8cSSatish Balay Mat A; 2139a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 214087828ca2SBarry Smith PetscScalar *vals,*buf; 2141a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2142a30f8f8cSSatish Balay MPI_Status status; 2143a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2144a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2145a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2146a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2147a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2148a30f8f8cSSatish Balay 2149a30f8f8cSSatish Balay PetscFunctionBegin; 2150b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay 2152a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay if (!rank) { 2155b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2157552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2158a30f8f8cSSatish Balay if (header[3] < 0) { 215929bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2160a30f8f8cSSatish Balay } 2161a30f8f8cSSatish Balay } 2162a30f8f8cSSatish Balay 2163a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2165a30f8f8cSSatish Balay 216629bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2167a30f8f8cSSatish Balay 2168a30f8f8cSSatish Balay /* 2169a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2170a30f8f8cSSatish Balay divisible by the blocksize 2171a30f8f8cSSatish Balay */ 2172a30f8f8cSSatish Balay Mbs = M/bs; 2173a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2174a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2175a30f8f8cSSatish Balay else Mbs++; 2176a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2177b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2178a30f8f8cSSatish Balay } 2179a30f8f8cSSatish Balay 2180a30f8f8cSSatish Balay /* determine ownership of all rows */ 2181a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2182a30f8f8cSSatish Balay m = mbs*bs; 2183b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2184a30f8f8cSSatish Balay browners = rowners + size + 1; 2185a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay rowners[0] = 0; 2187a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2188a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2189a30f8f8cSSatish Balay rstart = rowners[rank]; 2190a30f8f8cSSatish Balay rend = rowners[rank+1]; 2191a30f8f8cSSatish Balay 2192a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 219382502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay if (!rank) { 2195b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 219882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2200a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2201a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay } else { 2203a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay } 2205a30f8f8cSSatish Balay 22060222edb1SHong Zhang if (!rank) { /* procs[0] */ 2207a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 220882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2210a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2211a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2212a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2213a30f8f8cSSatish Balay } 2214a30f8f8cSSatish Balay } 2215a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2216a30f8f8cSSatish Balay 2217a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2218a30f8f8cSSatish Balay maxnz = 0; 2219a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2220a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2221a30f8f8cSSatish Balay } 222282502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay 2224a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2225a30f8f8cSSatish Balay nz = procsnz[0]; 222682502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay mycols = ibuf; 2228a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2229a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2231a30f8f8cSSatish Balay 2232a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2233a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2234a30f8f8cSSatish Balay nz = procsnz[i]; 2235a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2236a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2237a30f8f8cSSatish Balay } 2238a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2239a30f8f8cSSatish Balay if (size != 1) { 2240a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2241a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2242a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2243a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2244a30f8f8cSSatish Balay } 2245a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22460222edb1SHong Zhang } else { /* procs[i], i>0 */ 2247a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2248a30f8f8cSSatish Balay nz = 0; 2249a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2250a30f8f8cSSatish Balay nz += locrowlens[i]; 2251a30f8f8cSSatish Balay } 225282502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2253a30f8f8cSSatish Balay mycols = ibuf; 2254a30f8f8cSSatish Balay /* receive message of column indices*/ 2255a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 225729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2258a30f8f8cSSatish Balay } 2259a30f8f8cSSatish Balay 2260a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 226182502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2262a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 226382502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2264a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2265a30f8f8cSSatish Balay masked1 = mask + Mbs; 2266a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2267a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2268a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2269a30f8f8cSSatish Balay dcount = 0; 2270a30f8f8cSSatish Balay odcount = 0; 2271a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2272a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2273a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22740222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2275a30f8f8cSSatish Balay if (!mask[tmp]) { 2276a30f8f8cSSatish Balay mask[tmp] = 1; 22770222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22780222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2279a30f8f8cSSatish Balay } 2280a30f8f8cSSatish Balay } 2281a30f8f8cSSatish Balay rowcount++; 2282a30f8f8cSSatish Balay } 2283a30f8f8cSSatish Balay 22840222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22850222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2286a30f8f8cSSatish Balay 2287a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2288a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2289a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2290a30f8f8cSSatish Balay } 2291a30f8f8cSSatish Balay 2292a30f8f8cSSatish Balay /* create our matrix */ 229322191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 229422191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 229522191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2296273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2297a30f8f8cSSatish Balay 2298a30f8f8cSSatish Balay if (!rank) { 229987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2300a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2301a30f8f8cSSatish Balay nz = procsnz[0]; 2302a30f8f8cSSatish Balay vals = buf; 2303a30f8f8cSSatish Balay mycols = ibuf; 2304a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2305a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2306a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay /* insert into matrix */ 2309a30f8f8cSSatish Balay jj = rstart*bs; 2310a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23117e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2312a30f8f8cSSatish Balay mycols += locrowlens[i]; 2313a30f8f8cSSatish Balay vals += locrowlens[i]; 2314a30f8f8cSSatish Balay jj++; 2315a30f8f8cSSatish Balay } 23167e06b45fSHong Zhang 2317a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2318a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2319a30f8f8cSSatish Balay nz = procsnz[i]; 2320a30f8f8cSSatish Balay vals = buf; 2321a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2322a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2323a30f8f8cSSatish Balay } 2324a30f8f8cSSatish Balay /* the last proc */ 2325a30f8f8cSSatish Balay if (size != 1){ 2326a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2327a30f8f8cSSatish Balay vals = buf; 2328a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2329a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2330a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2331a30f8f8cSSatish Balay } 2332a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23337e06b45fSHong Zhang 2334a30f8f8cSSatish Balay } else { 2335a30f8f8cSSatish Balay /* receive numeric values */ 233687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2337a30f8f8cSSatish Balay 2338a30f8f8cSSatish Balay /* receive message of values*/ 2339a30f8f8cSSatish Balay vals = buf; 2340a30f8f8cSSatish Balay mycols = ibuf; 2341a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2342a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 234329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2344a30f8f8cSSatish Balay 2345a30f8f8cSSatish Balay /* insert into matrix */ 2346a30f8f8cSSatish Balay jj = rstart*bs; 2347a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2348a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2349a30f8f8cSSatish Balay mycols += locrowlens[i]; 2350a30f8f8cSSatish Balay vals += locrowlens[i]; 2351a30f8f8cSSatish Balay jj++; 2352a30f8f8cSSatish Balay } 2353a30f8f8cSSatish Balay } 23547e06b45fSHong Zhang 2355a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2356a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2357a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2360a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2361a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2362a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 236322191285SKris Buschelman *newmat = A; 2364a30f8f8cSSatish Balay PetscFunctionReturn(0); 2365a30f8f8cSSatish Balay } 2366a30f8f8cSSatish Balay 23674a2ae208SSatish Balay #undef __FUNCT__ 23684a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2369a30f8f8cSSatish Balay /*@ 2370a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2371a30f8f8cSSatish Balay 2372a30f8f8cSSatish Balay Input Parameters: 2373a30f8f8cSSatish Balay . mat - the matrix 2374a30f8f8cSSatish Balay . fact - factor 2375a30f8f8cSSatish Balay 2376a30f8f8cSSatish Balay Collective on Mat 2377a30f8f8cSSatish Balay 2378a30f8f8cSSatish Balay Level: advanced 2379a30f8f8cSSatish Balay 2380a30f8f8cSSatish Balay Notes: 2381a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2382a30f8f8cSSatish Balay 2383a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2384a30f8f8cSSatish Balay 2385a30f8f8cSSatish Balay .seealso: MatSetOption() 2386a30f8f8cSSatish Balay @*/ 2387a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2388a30f8f8cSSatish Balay { 2389a30f8f8cSSatish Balay PetscFunctionBegin; 239029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 239196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2392a30f8f8cSSatish Balay } 239324d5174aSHong Zhang 23944a2ae208SSatish Balay #undef __FUNCT__ 23954a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 239624d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 239724d5174aSHong Zhang { 239824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2399f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2400ca54ac64SHong Zhang PetscReal atmp; 240187828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2402ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2403154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 240487828ca2SBarry Smith PetscScalar *va; 24058a1c53f2SBarry Smith MatScalar *ba; 2406f4c0e9e4SHong Zhang MPI_Status stat; 240724d5174aSHong Zhang 240824d5174aSHong Zhang PetscFunctionBegin; 2409d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2410b1d4fb26SBarry Smith ierr = VecGetArrayFast(v,&va);CHKERRQ(ierr); 2411f4c0e9e4SHong Zhang 241256faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 241356faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2414f4c0e9e4SHong Zhang 2415f4c0e9e4SHong Zhang bs = a->bs; 2416f4c0e9e4SHong Zhang mbs = a->mbs; 2417f4c0e9e4SHong Zhang Mbs = a->Mbs; 2418f4c0e9e4SHong Zhang ba = b->a; 2419f4c0e9e4SHong Zhang bi = b->i; 2420f4c0e9e4SHong Zhang bj = b->j; 2421ca54ac64SHong Zhang /* 242256faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 242356faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2424ca54ac64SHong Zhang */ 2425f4c0e9e4SHong Zhang 2426f4c0e9e4SHong Zhang /* find ownerships */ 2427f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2428f4c0e9e4SHong Zhang /* 242904d41228SHong Zhang if (!rank){ 243004d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2431f4c0e9e4SHong Zhang } 2432f4c0e9e4SHong Zhang */ 2433f4c0e9e4SHong Zhang 2434f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 243582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2436ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2437f4c0e9e4SHong Zhang 2438f4c0e9e4SHong Zhang /* row_max for B */ 2439b8475685SHong Zhang if (rank != size-1){ 2440f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2441f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2442f4c0e9e4SHong Zhang brow = bs*i; 2443f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2444f4c0e9e4SHong Zhang bcol = bs*(*bj); 2445f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2446ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 244704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2448ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2449f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2450f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2451ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2452f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2453ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2454f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2455f4c0e9e4SHong Zhang } 2456f4c0e9e4SHong Zhang } 2457f4c0e9e4SHong Zhang bj++; 2458f4c0e9e4SHong Zhang } 2459f4c0e9e4SHong Zhang } 246004d41228SHong Zhang /* 246104d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 246204d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 246304d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 246404d41228SHong Zhang */ 2465f4c0e9e4SHong Zhang 2466f4c0e9e4SHong Zhang /* send values to its owners */ 2467f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2468f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2469ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 247056faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2471ca54ac64SHong Zhang /* 247256faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 247356faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2474ca54ac64SHong Zhang */ 2475ca54ac64SHong Zhang } 2476f4c0e9e4SHong Zhang } 2477f4c0e9e4SHong Zhang 2478f4c0e9e4SHong Zhang /* receive values */ 2479ca54ac64SHong Zhang if (rank){ 2480f4c0e9e4SHong Zhang rvalues = work; 2481ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2482f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 248356faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2484f4c0e9e4SHong Zhang /* process values */ 2485f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2486ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2487f4c0e9e4SHong Zhang } 2488ca54ac64SHong Zhang /* 248956faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 249056faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2491ca54ac64SHong Zhang */ 2492f4c0e9e4SHong Zhang } 2493ca54ac64SHong Zhang } 2494f4c0e9e4SHong Zhang 2495b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(v,&va);CHKERRQ(ierr); 2496ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249724d5174aSHong Zhang PetscFunctionReturn(0); 249824d5174aSHong Zhang } 24992798e883SHong Zhang 25002798e883SHong Zhang #undef __FUNCT__ 25012798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2502c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 25032798e883SHong Zhang { 25042798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2505ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2506ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2507ffe4fb16SHong Zhang Vec bb1; 2508ffe4fb16SHong Zhang 2509ffe4fb16SHong Zhang PetscFunctionBegin; 2510ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2511ffe4fb16SHong Zhang if (bs > 1) 2512ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2513ffe4fb16SHong Zhang 2514ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2515ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2516ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2517ffe4fb16SHong Zhang its--; 2518ffe4fb16SHong Zhang } 2519ffe4fb16SHong Zhang 2520ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2521ffe4fb16SHong Zhang while (its--){ 2522ffe4fb16SHong Zhang 2523ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2524ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2525ffe4fb16SHong Zhang 2526ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2527b1d4fb26SBarry Smith ierr = VecGetArrayFast(mat->slvec0,&ptr);CHKERRQ(ierr); 2528b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 2529ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2530b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(mat->slvec0,&ptr);CHKERRQ(ierr); 2531ffe4fb16SHong Zhang 2532ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2533ffe4fb16SHong Zhang 2534ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2535b1d4fb26SBarry Smith ierr = VecGetArrayFast(mat->slvec1,&ptr);CHKERRQ(ierr); 2536b1d4fb26SBarry Smith ierr = VecGetArrayFast(bb,&b);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2538b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(mat->slvec1,&ptr);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang 2540ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2541ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2542ffe4fb16SHong Zhang 2543ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2544b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 2545b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(bb,&b);CHKERRQ(ierr); 2546ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2547ffe4fb16SHong Zhang 2548ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2549ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang 2551ffe4fb16SHong Zhang /* local diagonal sweep */ 2552ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2553ffe4fb16SHong Zhang } 2554ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2555ffe4fb16SHong Zhang } else { 2556ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2557ffe4fb16SHong Zhang } 2558ffe4fb16SHong Zhang PetscFunctionReturn(0); 2559ffe4fb16SHong Zhang } 2560ffe4fb16SHong Zhang 2561ffe4fb16SHong Zhang #undef __FUNCT__ 2562ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2563ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2564ffe4fb16SHong Zhang { 2565ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 25662798e883SHong Zhang int ierr; 2567d05c616dSSatish Balay PetscScalar mone=-1.0; 25682798e883SHong Zhang Vec lvec1,bb1; 25692798e883SHong Zhang 25702798e883SHong Zhang PetscFunctionBegin; 257191723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 25722798e883SHong Zhang if (mat->bs > 1) 25732798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25742798e883SHong Zhang 2575c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25762798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2577bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25782798e883SHong Zhang its--; 25792798e883SHong Zhang } 25802798e883SHong Zhang 25812798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25822798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25832798e883SHong Zhang while (its--){ 25842798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25852798e883SHong Zhang 25862798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25872798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25882798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25892798e883SHong Zhang 25902798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25912798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25922798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25932798e883SHong Zhang 25942798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25952798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25962798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25972798e883SHong Zhang 25982798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25992798e883SHong Zhang 2600c14dc6b6SHong Zhang /* diagonal sweep */ 2601bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26022798e883SHong Zhang } 26032798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26042798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2605c14dc6b6SHong Zhang } else { 2606c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2607c14dc6b6SHong Zhang } 26082798e883SHong Zhang PetscFunctionReturn(0); 26092798e883SHong Zhang } 26102798e883SHong Zhang 2611