1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6f3da1532SBarry Smith #include "petscblaslapack.h" 7a30f8f8cSSatish Balay 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 192b40b63fSBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 202b40b63fSBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec); 21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay EXTERN_C_BEGIN 254a2ae208SSatish Balay #undef __FUNCT__ 264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 28a30f8f8cSSatish Balay { 29f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 30dfbe8321SBarry Smith PetscErrorCode ierr; 31a30f8f8cSSatish Balay 32a30f8f8cSSatish Balay PetscFunctionBegin; 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 35a30f8f8cSSatish Balay PetscFunctionReturn(0); 36a30f8f8cSSatish Balay } 37a30f8f8cSSatish Balay EXTERN_C_END 38a30f8f8cSSatish Balay 39a30f8f8cSSatish Balay EXTERN_C_BEGIN 404a2ae208SSatish Balay #undef __FUNCT__ 414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 43a30f8f8cSSatish Balay { 44f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 45dfbe8321SBarry Smith PetscErrorCode ierr; 46a30f8f8cSSatish Balay 47a30f8f8cSSatish Balay PetscFunctionBegin; 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 49a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 50a30f8f8cSSatish Balay PetscFunctionReturn(0); 51a30f8f8cSSatish Balay } 52a30f8f8cSSatish Balay EXTERN_C_END 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay 55a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 56a30f8f8cSSatish Balay { \ 57a30f8f8cSSatish Balay \ 58a30f8f8cSSatish Balay brow = row/bs; \ 59a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 60a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 61a30f8f8cSSatish Balay bcol = col/bs; \ 62a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 63a30f8f8cSSatish Balay low = 0; high = nrow; \ 64a30f8f8cSSatish Balay while (high-low > 3) { \ 65a30f8f8cSSatish Balay t = (low+high)/2; \ 66a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 67a30f8f8cSSatish Balay else low = t; \ 68a30f8f8cSSatish Balay } \ 69a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 70a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 71a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 72a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 73a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 74a30f8f8cSSatish Balay else *bap = value; \ 75a30f8f8cSSatish Balay goto a_noinsert; \ 76a30f8f8cSSatish Balay } \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 79e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 80fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 81a30f8f8cSSatish Balay N = nrow++ - 1; \ 82a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 83a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 84a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 85a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 86a30f8f8cSSatish Balay } \ 87a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 88a30f8f8cSSatish Balay rp[_i] = bcol; \ 89a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 90a30f8f8cSSatish Balay a_noinsert:; \ 91a30f8f8cSSatish Balay ailen[brow] = nrow; \ 92a30f8f8cSSatish Balay } 93e5e170daSBarry Smith 94a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 95a30f8f8cSSatish Balay { \ 96a30f8f8cSSatish Balay brow = row/bs; \ 97a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 98a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 99a30f8f8cSSatish Balay bcol = col/bs; \ 100a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 101a30f8f8cSSatish Balay low = 0; high = nrow; \ 102a30f8f8cSSatish Balay while (high-low > 3) { \ 103a30f8f8cSSatish Balay t = (low+high)/2; \ 104a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 105a30f8f8cSSatish Balay else low = t; \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 108a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 109a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 110a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 111a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 112a30f8f8cSSatish Balay else *bap = value; \ 113a30f8f8cSSatish Balay goto b_noinsert; \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 117e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 118fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 119a30f8f8cSSatish Balay N = nrow++ - 1; \ 120a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 121a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 122a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 124a30f8f8cSSatish Balay } \ 125a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 126a30f8f8cSSatish Balay rp[_i] = bcol; \ 127a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 128a30f8f8cSSatish Balay b_noinsert:; \ 129a30f8f8cSSatish Balay bilen[brow] = nrow; \ 130a30f8f8cSSatish Balay } 131a30f8f8cSSatish Balay 132a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 133a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 134a30f8f8cSSatish Balay */ 1354a2ae208SSatish Balay #undef __FUNCT__ 136dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 137dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 138a30f8f8cSSatish Balay { 139a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 140a30f8f8cSSatish Balay MatScalar value; 141ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 142dfbe8321SBarry Smith PetscErrorCode ierr; 1431302d50aSBarry Smith PetscInt i,j,row,col; 144d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 145d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 146d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 147a30f8f8cSSatish Balay 148a30f8f8cSSatish Balay /* Some Variables required in the macro */ 149a30f8f8cSSatish Balay Mat A = baij->A; 150a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1511302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 152a30f8f8cSSatish Balay MatScalar *aa=a->a; 153a30f8f8cSSatish Balay 154a30f8f8cSSatish Balay Mat B = baij->B; 155a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1561302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 157a30f8f8cSSatish Balay MatScalar *ba=b->a; 158a30f8f8cSSatish Balay 1591302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1601302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 161a30f8f8cSSatish Balay MatScalar *ap,*bap; 162a30f8f8cSSatish Balay 163a30f8f8cSSatish Balay /* for stash */ 164910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 165910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 166a30f8f8cSSatish Balay 167a30f8f8cSSatish Balay PetscFunctionBegin; 16871fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 169a30f8f8cSSatish Balay if (!baij->donotstash){ 17059ffdab8SBarry Smith if (n > baij->n_loc) { 17159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith baij->n_loc = n; 17659ffdab8SBarry Smith } 17759ffdab8SBarry Smith in_loc = baij->in_loc; 17859ffdab8SBarry Smith v_loc = baij->v_loc; 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 181a30f8f8cSSatish Balay for (i=0; i<m; i++) { 182a30f8f8cSSatish Balay if (im[i] < 0) continue; 1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 184e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 185a30f8f8cSSatish Balay #endif 186a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 187a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 188a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18901b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19001b2bd88SHong Zhang if (a->ignore_ltriangular){ 19101b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19201b2bd88SHong Zhang } else { 193e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19401b2bd88SHong Zhang } 19501b2bd88SHong Zhang } 196a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 197a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 198a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 199a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 200a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 201a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 202a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 203a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 205cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 206a30f8f8cSSatish Balay #endif 207a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 208a30f8f8cSSatish Balay if (mat->was_assembled) { 209a30f8f8cSSatish Balay if (!baij->colmap) { 210653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 211a30f8f8cSSatish Balay } 212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 213a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21471730473SSatish Balay col = col - 1; 215a30f8f8cSSatish Balay #else 21671730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 217a30f8f8cSSatish Balay #endif 218a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 219a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 220a30f8f8cSSatish Balay col = in[j]; 221a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 222a30f8f8cSSatish Balay B = baij->B; 223a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 224a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 225a30f8f8cSSatish Balay ba=b->a; 22671730473SSatish Balay } else col += in[j]%bs; 227a30f8f8cSSatish Balay } else col = in[j]; 228a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 230a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } else { /* off processor entry */ 2344cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 235a30f8f8cSSatish Balay if (!baij->donotstash) { 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 261ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 281e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 286f3f98c53SJed Brown if (im[i] > in[j]) { 287f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 288e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 289f3f98c53SJed Brown } 2900880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2910880e062SHong Zhang if ((roworiented) && (n == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2930880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2950880e062SHong Zhang } else { /* Here a copy is required */ 2960880e062SHong Zhang if (roworiented) { 2970880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2980880e062SHong Zhang } else { 2990880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3000880e062SHong Zhang } 3010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3020880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3030880e062SHong Zhang *barray++ = *value++; 3040880e062SHong Zhang } 3050880e062SHong Zhang } 3060880e062SHong Zhang barray -=bs2; 3070880e062SHong Zhang } 3080880e062SHong Zhang 3090880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3100880e062SHong Zhang col = in[j] - cstart; 3110880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3120880e062SHong Zhang } 3130880e062SHong Zhang else if (in[j] < 0) continue; 3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 315cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3160880e062SHong Zhang #endif 3170880e062SHong Zhang else { 3180880e062SHong Zhang if (mat->was_assembled) { 3190880e062SHong Zhang if (!baij->colmap) { 320653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3210880e062SHong Zhang } 3220880e062SHong Zhang 3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3251302d50aSBarry Smith { PetscInt data; 3260880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 327e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3280880e062SHong Zhang } 3290880e062SHong Zhang #else 330e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #endif 3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3340880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3350880e062SHong Zhang col = (col - 1)/bs; 3360880e062SHong Zhang #else 3370880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3380880e062SHong Zhang #endif 3390880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3400880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3410880e062SHong Zhang col = in[j]; 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang else col = in[j]; 345e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3460880e062SHong Zhang } 3470880e062SHong Zhang } 3480880e062SHong Zhang } else { 3494cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3500880e062SHong Zhang if (!baij->donotstash) { 3510880e062SHong Zhang if (roworiented) { 3520880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } else { 3540880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang } 3590880e062SHong Zhang PetscFunctionReturn(0); 360a30f8f8cSSatish Balay } 361a30f8f8cSSatish Balay 3624a2ae208SSatish Balay #undef __FUNCT__ 3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 365a30f8f8cSSatish Balay { 366f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3676849ba73SBarry Smith PetscErrorCode ierr; 368d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 369d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 370a30f8f8cSSatish Balay 371a30f8f8cSSatish Balay PetscFunctionBegin; 372a30f8f8cSSatish Balay for (i=0; i<m; i++) { 373e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 374e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 375a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 376a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 377a30f8f8cSSatish Balay for (j=0; j<n; j++) { 378e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 379e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 380a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 381a30f8f8cSSatish Balay col = idxn[j] - bscstart; 382c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } else { 384a30f8f8cSSatish Balay if (!baij->colmap) { 385653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 386a30f8f8cSSatish Balay } 387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 388a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 389a30f8f8cSSatish Balay data --; 390a30f8f8cSSatish Balay #else 391a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 392a30f8f8cSSatish Balay #endif 393a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 394a30f8f8cSSatish Balay else { 395a30f8f8cSSatish Balay col = data + idxn[j]%bs; 396e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay } else { 401e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay PetscFunctionReturn(0); 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay 4074a2ae208SSatish Balay #undef __FUNCT__ 4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 410a30f8f8cSSatish Balay { 411a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 412dfbe8321SBarry Smith PetscErrorCode ierr; 413a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 414a30f8f8cSSatish Balay 415a30f8f8cSSatish Balay PetscFunctionBegin; 416a30f8f8cSSatish Balay if (baij->size == 1) { 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } else { 419a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 420f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 422a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 423a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 424a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4257adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 426a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 427a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4280b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4290b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4300b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4310b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 432899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 433d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4340b8dc8d2SHong Zhang MatScalar *v; 4350b8dc8d2SHong Zhang 43674ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 437d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4380b8dc8d2SHong Zhang /* Amat */ 4390b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4420b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4440b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4450b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4460b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4490b8dc8d2SHong Zhang /* non-diagonal block */ 4500b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang } 4550b8dc8d2SHong Zhang /* Bmat */ 4560b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4570b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4580b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4590b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4600b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4610b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4620b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4630b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4640b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4650b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4660b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 4700b8dc8d2SHong Zhang } 471d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4720b8dc8d2SHong Zhang *norm = 0.0; 473d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4740b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4750b8dc8d2SHong Zhang } 47674ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay } 481a30f8f8cSSatish Balay PetscFunctionReturn(0); 482a30f8f8cSSatish Balay } 483a30f8f8cSSatish Balay 4844a2ae208SSatish Balay #undef __FUNCT__ 4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 487a30f8f8cSSatish Balay { 488a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 489dfbe8321SBarry Smith PetscErrorCode ierr; 4901302d50aSBarry Smith PetscInt nstash,reallocs; 491a30f8f8cSSatish Balay InsertMode addv; 492a30f8f8cSSatish Balay 493a30f8f8cSSatish Balay PetscFunctionBegin; 4944cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 495a30f8f8cSSatish Balay PetscFunctionReturn(0); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay 498a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4997adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 500e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 501a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 502a30f8f8cSSatish Balay 503d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5081e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 509a30f8f8cSSatish Balay PetscFunctionReturn(0); 510a30f8f8cSSatish Balay } 511a30f8f8cSSatish Balay 5124a2ae208SSatish Balay #undef __FUNCT__ 5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 515a30f8f8cSSatish Balay { 516a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 517a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5186849ba73SBarry Smith PetscErrorCode ierr; 51913f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 520e44c0bd4SBarry Smith PetscInt *row,*col; 521ace3abfcSBarry Smith PetscBool other_disassembled; 52213f74950SBarry Smith PetscMPIInt n; 523ace3abfcSBarry Smith PetscBool r1,r2,r3; 524a30f8f8cSSatish Balay MatScalar *val; 525a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 526a30f8f8cSSatish Balay 52791c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 528a30f8f8cSSatish Balay PetscFunctionBegin; 529a30f8f8cSSatish Balay 5304cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 531a30f8f8cSSatish Balay while (1) { 532a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 533a30f8f8cSSatish Balay if (!flg) break; 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay for (i=0; i<n;) { 536a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 537a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 538a30f8f8cSSatish Balay if (j < n) ncols = j-i; 539a30f8f8cSSatish Balay else ncols = n-i; 540a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 541dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 542a30f8f8cSSatish Balay i = j; 543a30f8f8cSSatish Balay } 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 546a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 547a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 548a30f8f8cSSatish Balay restore the original flags */ 549a30f8f8cSSatish Balay r1 = baij->roworiented; 550a30f8f8cSSatish Balay r2 = a->roworiented; 55191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 552a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 553a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 555a30f8f8cSSatish Balay while (1) { 556a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 557a30f8f8cSSatish Balay if (!flg) break; 558a30f8f8cSSatish Balay 559a30f8f8cSSatish Balay for (i=0; i<n;) { 560a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 561a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 562a30f8f8cSSatish Balay if (j < n) ncols = j-i; 563a30f8f8cSSatish Balay else ncols = n-i; 564dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 565a30f8f8cSSatish Balay i = j; 566a30f8f8cSSatish Balay } 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 569a30f8f8cSSatish Balay baij->roworiented = r1; 570a30f8f8cSSatish Balay a->roworiented = r2; 57191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 574a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 576a30f8f8cSSatish Balay 577a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 578a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 579a30f8f8cSSatish Balay /* 580a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 581a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 582a30f8f8cSSatish Balay */ 583a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5847adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 585a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 586c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay 590a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 592a30f8f8cSSatish Balay } 59391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 594a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 595a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 596a30f8f8cSSatish Balay 59774ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 598a30f8f8cSSatish Balay baij->rowvalues = 0; 5995222a1afSHong Zhang 600a30f8f8cSSatish Balay PetscFunctionReturn(0); 601a30f8f8cSSatish Balay } 602a30f8f8cSSatish Balay 603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6044a2ae208SSatish Balay #undef __FUNCT__ 6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 607a30f8f8cSSatish Balay { 608a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 609dfbe8321SBarry Smith PetscErrorCode ierr; 610d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6111302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 612ace3abfcSBarry Smith PetscBool iascii,isdraw; 613b0a32e0cSBarry Smith PetscViewer sviewer; 614f3ef73ceSBarry Smith PetscViewerFormat format; 615a30f8f8cSSatish Balay 616a30f8f8cSSatish Balay PetscFunctionBegin; 6172692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6182692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61932077d6dSBarry Smith if (iascii) { 620b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 621456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 622a30f8f8cSSatish Balay MatInfo info; 6237adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 624a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 62616608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 627a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 628e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 629a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 630e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 631b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63207d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 633a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 634a30f8f8cSSatish Balay PetscFunctionReturn(0); 635fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63677431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 637a30f8f8cSSatish Balay PetscFunctionReturn(0); 638c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 639c1490034SHong Zhang PetscFunctionReturn(0); 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay 643a30f8f8cSSatish Balay if (isdraw) { 644b0a32e0cSBarry Smith PetscDraw draw; 645ace3abfcSBarry Smith PetscBool isnull; 646b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 647b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 650a30f8f8cSSatish Balay if (size == 1) { 6517adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 652a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 653a30f8f8cSSatish Balay } else { 654a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 655a30f8f8cSSatish Balay Mat A; 65665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 658d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 659a30f8f8cSSatish Balay MatScalar *a; 660a30f8f8cSSatish Balay 661f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6627adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 663a30f8f8cSSatish Balay if (!rank) { 664f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 665a30f8f8cSSatish Balay } else { 666f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 667a30f8f8cSSatish Balay } 668f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 669d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 67052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay /* copy over the A part */ 67365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 674a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6751302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 676a30f8f8cSSatish Balay 677a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 678e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 679a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 680a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 681e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 682a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 683dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 684a30f8f8cSSatish Balay col++; a += bs; 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay /* copy over the B part */ 68965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 691a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 692e9f7bc9eSHong Zhang 693e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 694a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 695a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 696a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 697a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 698799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 699a30f8f8cSSatish Balay col++; a += bs; 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 706a30f8f8cSSatish Balay /* 707a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 708b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 709a30f8f8cSSatish Balay */ 710b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71165d70643SHong Zhang if (!rank) { 7127adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7137566de4bSShri Abhyankar /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/ 7147566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ); 715a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 719a30f8f8cSSatish Balay } 720a30f8f8cSSatish Balay PetscFunctionReturn(0); 721a30f8f8cSSatish Balay } 722a30f8f8cSSatish Balay 7234a2ae208SSatish Balay #undef __FUNCT__ 7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 726a30f8f8cSSatish Balay { 727dfbe8321SBarry Smith PetscErrorCode ierr; 728ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay PetscFunctionBegin; 7312692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 7322692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7332692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 7342692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 736a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 737a30f8f8cSSatish Balay } else { 738e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay PetscFunctionReturn(0); 741a30f8f8cSSatish Balay } 742a30f8f8cSSatish Balay 7434a2ae208SSatish Balay #undef __FUNCT__ 7444a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 745dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 746a30f8f8cSSatish Balay { 747a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 748dfbe8321SBarry Smith PetscErrorCode ierr; 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay PetscFunctionBegin; 751a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 752d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 753a30f8f8cSSatish Balay #endif 754a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 75613ea16ffSHong Zhang if (baij->A){ierr = MatDestroy(baij->A);CHKERRQ(ierr);} 75713ea16ffSHong Zhang if (baij->B){ierr = MatDestroy(baij->B);CHKERRQ(ierr);} 758a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7599c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 760a30f8f8cSSatish Balay #else 76105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 762a30f8f8cSSatish Balay #endif 76305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 764a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 765a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76640781036SHong Zhang if (baij->slvec0) { 76740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76940781036SHong Zhang } 77040781036SHong Zhang if (baij->slvec1) { 77140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 77240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77440781036SHong Zhang } 77540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 7765755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77705b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 779fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 780fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 781fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 78265460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE) 78305b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 784a30f8f8cSSatish Balay #endif 78559ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78659ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 787899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 789901853e0SKris Buschelman 790dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 793901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 794901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 795a30f8f8cSSatish Balay PetscFunctionReturn(0); 796a30f8f8cSSatish Balay } 797a30f8f8cSSatish Balay 7984a2ae208SSatish Balay #undef __FUNCT__ 799547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 800547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 801547795f9SHong Zhang { 802547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 803547795f9SHong Zhang PetscErrorCode ierr; 804547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 805547795f9SHong Zhang PetscScalar *x,*from; 806547795f9SHong Zhang 807547795f9SHong Zhang PetscFunctionBegin; 808547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 809e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 810547795f9SHong Zhang 811547795f9SHong Zhang /* diagonal part */ 812547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 813547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 814547795f9SHong Zhang 815547795f9SHong Zhang /* subdiagonal part */ 816547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 817547795f9SHong Zhang 818547795f9SHong Zhang /* copy x into the vec slvec0 */ 819547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 820547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 821547795f9SHong Zhang 822547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 823547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 824547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 825547795f9SHong Zhang 826547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 827547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 828547795f9SHong Zhang /* supperdiagonal part */ 829547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 830547795f9SHong Zhang PetscFunctionReturn(0); 831547795f9SHong Zhang } 832547795f9SHong Zhang 833547795f9SHong Zhang #undef __FUNCT__ 834a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 835dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 836a9d4b620SHong Zhang { 837a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 838dfbe8321SBarry Smith PetscErrorCode ierr; 839d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 840fa22f6d0SBarry Smith PetscScalar *x,*from; 841a9d4b620SHong Zhang 842a9d4b620SHong Zhang PetscFunctionBegin; 843a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 844e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 845a9d4b620SHong Zhang 846a9d4b620SHong Zhang /* diagonal part */ 847a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 848fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 849a9d4b620SHong Zhang 850a9d4b620SHong Zhang /* subdiagonal part */ 851a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 852fc165ae2SBarry Smith 853a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8541ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8551ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 856a9d4b620SHong Zhang 857fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 858fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8591ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 860fc165ae2SBarry Smith 861fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 862ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 863a9d4b620SHong Zhang /* supperdiagonal part */ 864a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 865a9d4b620SHong Zhang PetscFunctionReturn(0); 866a9d4b620SHong Zhang } 867a9d4b620SHong Zhang 868a9d4b620SHong Zhang #undef __FUNCT__ 86940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 870dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 871a30f8f8cSSatish Balay { 872a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 873dfbe8321SBarry Smith PetscErrorCode ierr; 8741302d50aSBarry Smith PetscInt nt; 875a30f8f8cSSatish Balay 876a30f8f8cSSatish Balay PetscFunctionBegin; 877a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 878e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 879e7e72b3dSBarry Smith 880a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 881e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88265d70643SHong Zhang 883ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 884b941877fSHong Zhang /* do diagonal part */ 885b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 886b941877fSHong Zhang /* do supperdiagonal part */ 887ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 888b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 889b941877fSHong Zhang /* do subdiagonal part */ 890b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 891ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 892ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89365d70643SHong Zhang 894a30f8f8cSSatish Balay PetscFunctionReturn(0); 895a30f8f8cSSatish Balay } 896a30f8f8cSSatish Balay 8974a2ae208SSatish Balay #undef __FUNCT__ 8984a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 899dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 900a30f8f8cSSatish Balay { 901de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 902dfbe8321SBarry Smith PetscErrorCode ierr; 903d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 904a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 905a9d4b620SHong Zhang 906a9d4b620SHong Zhang PetscFunctionBegin; 907a9d4b620SHong Zhang /* 9087adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9097adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 910a9d4b620SHong Zhang */ 911a9d4b620SHong Zhang /* diagonal part */ 912a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9132dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 914a9d4b620SHong Zhang 915a9d4b620SHong Zhang /* subdiagonal part */ 916a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 917a9d4b620SHong Zhang 918a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9191ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9201ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 921a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9221ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 923a9d4b620SHong Zhang 924ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9251ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 926ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 927a9d4b620SHong Zhang 928a9d4b620SHong Zhang /* supperdiagonal part */ 929a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 930a9d4b620SHong Zhang 931a9d4b620SHong Zhang PetscFunctionReturn(0); 932a9d4b620SHong Zhang } 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang #undef __FUNCT__ 935a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 936dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 937a9d4b620SHong Zhang { 938a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 939dfbe8321SBarry Smith PetscErrorCode ierr; 940a30f8f8cSSatish Balay 941a30f8f8cSSatish Balay PetscFunctionBegin; 942ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 943b941877fSHong Zhang /* do diagonal part */ 944b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 945b941877fSHong Zhang /* do supperdiagonal part */ 946ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 947de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 948de8b6608SHong Zhang 949b941877fSHong Zhang /* do subdiagonal part */ 950a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 951ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 952ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 953aa482183SHong Zhang 954a30f8f8cSSatish Balay PetscFunctionReturn(0); 955a30f8f8cSSatish Balay } 956a30f8f8cSSatish Balay 957a30f8f8cSSatish Balay /* 958a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 959a30f8f8cSSatish Balay diagonal block 960a30f8f8cSSatish Balay */ 9614a2ae208SSatish Balay #undef __FUNCT__ 9624a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 963dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 964a30f8f8cSSatish Balay { 965a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 966dfbe8321SBarry Smith PetscErrorCode ierr; 967a30f8f8cSSatish Balay 968a30f8f8cSSatish Balay PetscFunctionBegin; 969e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 970a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 971a30f8f8cSSatish Balay PetscFunctionReturn(0); 972a30f8f8cSSatish Balay } 973a30f8f8cSSatish Balay 9744a2ae208SSatish Balay #undef __FUNCT__ 9754a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 976f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 977a30f8f8cSSatish Balay { 978a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 979dfbe8321SBarry Smith PetscErrorCode ierr; 980a30f8f8cSSatish Balay 981a30f8f8cSSatish Balay PetscFunctionBegin; 982f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 983f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 984a30f8f8cSSatish Balay PetscFunctionReturn(0); 985a30f8f8cSSatish Balay } 986a30f8f8cSSatish Balay 9874a2ae208SSatish Balay #undef __FUNCT__ 9884a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9891302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 990a30f8f8cSSatish Balay { 991d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 992d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 993d0d4cfc2SHong Zhang PetscErrorCode ierr; 994d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 995d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 996899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 997d0d4cfc2SHong Zhang 998a30f8f8cSSatish Balay PetscFunctionBegin; 999e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1000d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1001d0d4cfc2SHong Zhang 1002d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1003d0d4cfc2SHong Zhang /* 1004d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1005d0d4cfc2SHong Zhang */ 1006d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1007d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1008d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1009d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1010d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1011d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1012d0d4cfc2SHong Zhang } 101374ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1014d0d4cfc2SHong Zhang } 1015d0d4cfc2SHong Zhang 1016e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1017d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1018d0d4cfc2SHong Zhang 1019d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1020d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1021d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1022d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1023d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1024d0d4cfc2SHong Zhang nztot = nzA + nzB; 1025d0d4cfc2SHong Zhang 1026d0d4cfc2SHong Zhang cmap = mat->garray; 1027d0d4cfc2SHong Zhang if (v || idx) { 1028d0d4cfc2SHong Zhang if (nztot) { 1029d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1030d0d4cfc2SHong Zhang PetscInt imark = -1; 1031d0d4cfc2SHong Zhang if (v) { 1032d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1033d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1034d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1035d0d4cfc2SHong Zhang else break; 1036d0d4cfc2SHong Zhang } 1037d0d4cfc2SHong Zhang imark = i; 1038d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1039d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1040d0d4cfc2SHong Zhang } 1041d0d4cfc2SHong Zhang if (idx) { 1042d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1043d0d4cfc2SHong Zhang if (imark > -1) { 1044d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1045d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1046d0d4cfc2SHong Zhang } 1047d0d4cfc2SHong Zhang } else { 1048d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1049d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1050d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1051d0d4cfc2SHong Zhang else break; 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang imark = i; 1054d0d4cfc2SHong Zhang } 1055d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1056d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1057d0d4cfc2SHong Zhang } 1058d0d4cfc2SHong Zhang } else { 1059d0d4cfc2SHong Zhang if (idx) *idx = 0; 1060d0d4cfc2SHong Zhang if (v) *v = 0; 1061d0d4cfc2SHong Zhang } 1062d0d4cfc2SHong Zhang } 1063d0d4cfc2SHong Zhang *nz = nztot; 1064d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1065d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1066a30f8f8cSSatish Balay PetscFunctionReturn(0); 1067a30f8f8cSSatish Balay } 1068a30f8f8cSSatish Balay 10694a2ae208SSatish Balay #undef __FUNCT__ 10704a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10711302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1072a30f8f8cSSatish Balay { 1073a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1074a30f8f8cSSatish Balay 1075a30f8f8cSSatish Balay PetscFunctionBegin; 1076e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1077a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1078a30f8f8cSSatish Balay PetscFunctionReturn(0); 1079a30f8f8cSSatish Balay } 1080a30f8f8cSSatish Balay 10814a2ae208SSatish Balay #undef __FUNCT__ 1082d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1083d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1084d0d4cfc2SHong Zhang { 1085d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1086d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1087d0d4cfc2SHong Zhang 1088d0d4cfc2SHong Zhang PetscFunctionBegin; 1089d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1090d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1091d0d4cfc2SHong Zhang } 1092d0d4cfc2SHong Zhang #undef __FUNCT__ 1093d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1094d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1095d0d4cfc2SHong Zhang { 1096d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1097d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1098d0d4cfc2SHong Zhang 1099d0d4cfc2SHong Zhang PetscFunctionBegin; 1100d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1101d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1102d0d4cfc2SHong Zhang } 1103d0d4cfc2SHong Zhang 1104d0d4cfc2SHong Zhang #undef __FUNCT__ 110599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110799cafbc1SBarry Smith { 110899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110999cafbc1SBarry Smith PetscErrorCode ierr; 111099cafbc1SBarry Smith 111199cafbc1SBarry Smith PetscFunctionBegin; 111299cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111399cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111499cafbc1SBarry Smith PetscFunctionReturn(0); 111599cafbc1SBarry Smith } 111699cafbc1SBarry Smith 111799cafbc1SBarry Smith #undef __FUNCT__ 111899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112099cafbc1SBarry Smith { 112199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112299cafbc1SBarry Smith PetscErrorCode ierr; 112399cafbc1SBarry Smith 112499cafbc1SBarry Smith PetscFunctionBegin; 112599cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112699cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112799cafbc1SBarry Smith PetscFunctionReturn(0); 112899cafbc1SBarry Smith } 112999cafbc1SBarry Smith 113099cafbc1SBarry Smith #undef __FUNCT__ 11314a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1132dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1133a30f8f8cSSatish Balay { 1134a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1135dfbe8321SBarry Smith PetscErrorCode ierr; 1136a30f8f8cSSatish Balay 1137a30f8f8cSSatish Balay PetscFunctionBegin; 1138a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1140a30f8f8cSSatish Balay PetscFunctionReturn(0); 1141a30f8f8cSSatish Balay } 1142a30f8f8cSSatish Balay 11434a2ae208SSatish Balay #undef __FUNCT__ 11444a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1145dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1146a30f8f8cSSatish Balay { 1147a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1148a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1149dfbe8321SBarry Smith PetscErrorCode ierr; 1150a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1151a30f8f8cSSatish Balay 1152a30f8f8cSSatish Balay PetscFunctionBegin; 1153d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1154a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1155a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1156a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1157a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1158a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1159a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1160a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1161a30f8f8cSSatish Balay info->nz_used = isend[0]; 1162a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1163a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1164a30f8f8cSSatish Balay info->memory = isend[3]; 1165a30f8f8cSSatish Balay info->mallocs = isend[4]; 1166a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11677adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1168a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1169a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1170a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1171a30f8f8cSSatish Balay info->memory = irecv[3]; 1172a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1173a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11747adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1176a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1177a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1178a30f8f8cSSatish Balay info->memory = irecv[3]; 1179a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1180a30f8f8cSSatish Balay } else { 1181e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1182a30f8f8cSSatish Balay } 1183a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1184a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1185a30f8f8cSSatish Balay info->factor_mallocs = 0; 1186a30f8f8cSSatish Balay PetscFunctionReturn(0); 1187a30f8f8cSSatish Balay } 1188a30f8f8cSSatish Balay 11894a2ae208SSatish Balay #undef __FUNCT__ 11904a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1191ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1192a30f8f8cSSatish Balay { 1193a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1194d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1195dfbe8321SBarry Smith PetscErrorCode ierr; 1196a30f8f8cSSatish Balay 1197a30f8f8cSSatish Balay PetscFunctionBegin; 1198e98b92d7SKris Buschelman switch (op) { 1199512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1200e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1202a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1203e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12044e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12054e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1206e98b92d7SKris Buschelman break; 1207e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12084e0d8c25SBarry Smith a->roworiented = flg; 12094e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12104e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1211e98b92d7SKris Buschelman break; 12124e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1213290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1214e98b92d7SKris Buschelman break; 1215e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12164e0d8c25SBarry Smith a->donotstash = flg; 1217e98b92d7SKris Buschelman break; 1218e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12194e0d8c25SBarry Smith a->ht_flag = flg; 1220e98b92d7SKris Buschelman break; 12219a4540c5SBarry Smith case MAT_HERMITIAN: 1222e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1223eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1224547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1225eeffb40dSHong Zhang break; 1226ffa07934SHong Zhang case MAT_SPD: 1227ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1228ffa07934SHong Zhang A->spd = flg; 1229ffa07934SHong Zhang if (flg) { 1230ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1231ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1232ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1233ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1234ffa07934SHong Zhang } 1235ffa07934SHong Zhang break; 123677e54ba9SKris Buschelman case MAT_SYMMETRIC: 1237eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1238eeffb40dSHong Zhang break; 123977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1240eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1241eeffb40dSHong Zhang break; 12429a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1243e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1244290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124577e54ba9SKris Buschelman break; 1246d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12474e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1248d0d4cfc2SHong Zhang break; 1249d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12504e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1251d0d4cfc2SHong Zhang break; 1252d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12534e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1254d0d4cfc2SHong Zhang break; 1255e98b92d7SKris Buschelman default: 1256e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1257a30f8f8cSSatish Balay } 1258a30f8f8cSSatish Balay PetscFunctionReturn(0); 1259a30f8f8cSSatish Balay } 1260a30f8f8cSSatish Balay 12614a2ae208SSatish Balay #undef __FUNCT__ 12628115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1263fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1264a30f8f8cSSatish Balay { 1265dfbe8321SBarry Smith PetscErrorCode ierr; 1266a30f8f8cSSatish Balay PetscFunctionBegin; 1267815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1268999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1269fc4dec0aSBarry Smith } 12708115998fSBarry Smith PetscFunctionReturn(0); 1271a30f8f8cSSatish Balay } 1272a30f8f8cSSatish Balay 12734a2ae208SSatish Balay #undef __FUNCT__ 12744a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1275dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1276a30f8f8cSSatish Balay { 1277a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1278a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1279dfbe8321SBarry Smith PetscErrorCode ierr; 12805e90f9d9SHong Zhang PetscInt nv,m,n; 1281ace3abfcSBarry Smith PetscBool flg; 1282a30f8f8cSSatish Balay 1283a30f8f8cSSatish Balay PetscFunctionBegin; 1284a30f8f8cSSatish Balay if (ll != rr){ 1285b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1286e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1287a30f8f8cSSatish Balay } 1288b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1289b3bf805bSHong Zhang 12905e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1291e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1292b3bf805bSHong Zhang 12935e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1294e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12955e90f9d9SHong Zhang 1296ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12975e90f9d9SHong Zhang 12985e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1299a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13005e90f9d9SHong Zhang 13015e90f9d9SHong Zhang /* scale the diagonal part */ 1302a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1303a30f8f8cSSatish Balay 13045e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1305ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay PetscFunctionReturn(0); 1308a30f8f8cSSatish Balay } 1309a30f8f8cSSatish Balay 13104a2ae208SSatish Balay #undef __FUNCT__ 13114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1312dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1313a30f8f8cSSatish Balay { 1314f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1315dfbe8321SBarry Smith PetscErrorCode ierr; 1316a30f8f8cSSatish Balay 1317a30f8f8cSSatish Balay PetscFunctionBegin; 1318a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay PetscFunctionReturn(0); 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay 13226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1323a30f8f8cSSatish Balay 13244a2ae208SSatish Balay #undef __FUNCT__ 13254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1326ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1327a30f8f8cSSatish Balay { 1328a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1329a30f8f8cSSatish Balay Mat a,b,c,d; 1330ace3abfcSBarry Smith PetscBool flg; 1331dfbe8321SBarry Smith PetscErrorCode ierr; 1332a30f8f8cSSatish Balay 1333a30f8f8cSSatish Balay PetscFunctionBegin; 1334a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1335a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1336a30f8f8cSSatish Balay 1337a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1338abc0a331SBarry Smith if (flg) { 1339a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay } 13417adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1342a30f8f8cSSatish Balay PetscFunctionReturn(0); 1343a30f8f8cSSatish Balay } 1344a30f8f8cSSatish Balay 13454a2ae208SSatish Balay #undef __FUNCT__ 13463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13473c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13483c896bc6SHong Zhang { 13493c896bc6SHong Zhang PetscErrorCode ierr; 13503c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13513c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13523c896bc6SHong Zhang 13533c896bc6SHong Zhang PetscFunctionBegin; 13543c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13553c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1356d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13573c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1358d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13593c896bc6SHong Zhang } else { 13603c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13613c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13623c896bc6SHong Zhang } 13633c896bc6SHong Zhang PetscFunctionReturn(0); 13643c896bc6SHong Zhang } 13653c896bc6SHong Zhang 13663c896bc6SHong Zhang #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1369273d9f13SBarry Smith { 1370dfbe8321SBarry Smith PetscErrorCode ierr; 1371273d9f13SBarry Smith 1372273d9f13SBarry Smith PetscFunctionBegin; 1373db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1374273d9f13SBarry Smith PetscFunctionReturn(0); 1375273d9f13SBarry Smith } 1376a5e6ed63SBarry Smith 13774fe895cdSHong Zhang #undef __FUNCT__ 13784fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13804fe895cdSHong Zhang { 13814fe895cdSHong Zhang PetscErrorCode ierr; 13824fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13834fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13844fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13854fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13864fe895cdSHong Zhang 13874fe895cdSHong Zhang PetscFunctionBegin; 13884fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13894fe895cdSHong Zhang PetscScalar alpha = a; 13904fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13914fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13920805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13934fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13944fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13954fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13960805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13974fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13984fe895cdSHong Zhang } else { 1399d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14004fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1401d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14024fe895cdSHong Zhang } 14034fe895cdSHong Zhang PetscFunctionReturn(0); 14044fe895cdSHong Zhang } 14054fe895cdSHong Zhang 1406a5e6ed63SBarry Smith #undef __FUNCT__ 14076363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14086363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14096363de48SJed Brown { 14106363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14116363de48SJed Brown PetscInt rbs,cbs; 14126363de48SJed Brown PetscErrorCode ierr; 14136363de48SJed Brown 14146363de48SJed Brown PetscFunctionBegin; 14156363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14166363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14176363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14186363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1419e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 1420e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14216363de48SJed Brown PetscFunctionReturn(0); 14226363de48SJed Brown } 14236363de48SJed Brown 14246363de48SJed Brown #undef __FUNCT__ 1425a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14261302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1427a5e6ed63SBarry Smith { 14286849ba73SBarry Smith PetscErrorCode ierr; 14291302d50aSBarry Smith PetscInt i; 1430ace3abfcSBarry Smith PetscBool flg; 1431a5e6ed63SBarry Smith 14326849ba73SBarry Smith PetscFunctionBegin; 1433a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1434a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1435e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1436a5e6ed63SBarry Smith } 1437a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1438a5e6ed63SBarry Smith PetscFunctionReturn(0); 1439a5e6ed63SBarry Smith } 1440a5e6ed63SBarry Smith 1441a5e6ed63SBarry Smith 1442a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1443a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1444a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1445a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1446a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1447a9d4b620SHong Zhang MatMult_MPISBAIJ, 144897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1449431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1450431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1451a30f8f8cSSatish Balay 0, 1452a30f8f8cSSatish Balay 0, 1453a30f8f8cSSatish Balay 0, 145497304618SKris Buschelman /*10*/ 0, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 145741f059aeSBarry Smith MatSOR_MPISBAIJ, 1458a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 145997304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1460a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1461a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1462a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1463a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1465a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1466a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1467a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1468d519adbfSMatthew Knepley /*24*/ 0, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472a30f8f8cSSatish Balay 0, 1473d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1474b5df2d14SHong Zhang 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477a30f8f8cSSatish Balay 0, 1478d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1484a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1485d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1486a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14873c896bc6SHong Zhang MatCopy_MPISBAIJ, 1488d519adbfSMatthew Knepley /*44*/ 0, 1489a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 14936363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 1498d519adbfSMatthew Knepley /*54*/ 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1503d519adbfSMatthew Knepley /*59*/ 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506357abbc8SBarry Smith 0, 150724d5174aSHong Zhang 0, 1508d519adbfSMatthew Knepley /*64*/ 0, 150924d5174aSHong Zhang 0, 151024d5174aSHong Zhang 0, 151124d5174aSHong Zhang 0, 151224d5174aSHong Zhang 0, 1513d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151424d5174aSHong Zhang 0, 151597304618SKris Buschelman 0, 151697304618SKris Buschelman 0, 151797304618SKris Buschelman 0, 1518d519adbfSMatthew Knepley /*74*/ 0, 151997304618SKris Buschelman 0, 152097304618SKris Buschelman 0, 152197304618SKris Buschelman 0, 152297304618SKris Buschelman 0, 1523d519adbfSMatthew Knepley /*79*/ 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 152697304618SKris Buschelman 0, 15275bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1528d519adbfSMatthew Knepley /*84*/ 0, 1529865e5f61SKris Buschelman 0, 1530865e5f61SKris Buschelman 0, 1531865e5f61SKris Buschelman 0, 1532865e5f61SKris Buschelman 0, 1533d519adbfSMatthew Knepley /*89*/ 0, 1534865e5f61SKris Buschelman 0, 1535865e5f61SKris Buschelman 0, 1536865e5f61SKris Buschelman 0, 1537865e5f61SKris Buschelman 0, 1538d519adbfSMatthew Knepley /*94*/ 0, 1539865e5f61SKris Buschelman 0, 1540865e5f61SKris Buschelman 0, 154199cafbc1SBarry Smith 0, 154299cafbc1SBarry Smith 0, 1543d519adbfSMatthew Knepley /*99*/ 0, 154499cafbc1SBarry Smith 0, 154599cafbc1SBarry Smith 0, 154699cafbc1SBarry Smith 0, 154799cafbc1SBarry Smith 0, 1548d519adbfSMatthew Knepley /*104*/0, 154999cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1550d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1551d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 155295936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 155395936485SShri Abhyankar /*109*/0, 155495936485SShri Abhyankar 0, 155595936485SShri Abhyankar 0, 155695936485SShri Abhyankar 0, 155795936485SShri Abhyankar 0, 155895936485SShri Abhyankar /*114*/0, 155995936485SShri Abhyankar 0, 156095936485SShri Abhyankar 0, 156195936485SShri Abhyankar 0, 156295936485SShri Abhyankar 0, 156395936485SShri Abhyankar /*119*/0, 156495936485SShri Abhyankar 0, 156595936485SShri Abhyankar 0, 15665bba2384SShri Abhyankar 0 156799cafbc1SBarry Smith }; 1568a30f8f8cSSatish Balay 1569a30f8f8cSSatish Balay 1570a30f8f8cSSatish Balay EXTERN_C_BEGIN 15714a2ae208SSatish Balay #undef __FUNCT__ 15724a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1573ace3abfcSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscBool *iscopy,MatReuse reuse,Mat *a) 1574a30f8f8cSSatish Balay { 1575a30f8f8cSSatish Balay PetscFunctionBegin; 1576a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1577a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1578a30f8f8cSSatish Balay PetscFunctionReturn(0); 1579a30f8f8cSSatish Balay } 1580a30f8f8cSSatish Balay EXTERN_C_END 1581a30f8f8cSSatish Balay 1582273d9f13SBarry Smith EXTERN_C_BEGIN 15834a2ae208SSatish Balay #undef __FUNCT__ 1584a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1585be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1586a23d5eceSKris Buschelman { 1587a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1588dfbe8321SBarry Smith PetscErrorCode ierr; 1589db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1590a23d5eceSKris Buschelman 1591a23d5eceSKris Buschelman PetscFunctionBegin; 1592db4efbfdSBarry Smith if (bs < 0){ 15937adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1594db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15958c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1596db4efbfdSBarry Smith bs = PetscAbs(bs); 1597db4efbfdSBarry Smith } 1598e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1599db4efbfdSBarry Smith bs = newbs; 1600a23d5eceSKris Buschelman 1601a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1602a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1603e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1604e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1605899cda47SBarry Smith 1606d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 160726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 160826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1609899cda47SBarry Smith 1610a23d5eceSKris Buschelman if (d_nnz) { 1611d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1612e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1613a23d5eceSKris Buschelman } 1614a23d5eceSKris Buschelman } 1615a23d5eceSKris Buschelman if (o_nnz) { 1616d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1617e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1618a23d5eceSKris Buschelman } 1619a23d5eceSKris Buschelman } 1620a23d5eceSKris Buschelman 1621a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1622d0f46423SBarry Smith mbs = B->rmap->n/bs; 1623d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1624d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1625e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1626a23d5eceSKris Buschelman } 1627a23d5eceSKris Buschelman 1628d0f46423SBarry Smith B->rmap->bs = bs; 1629a23d5eceSKris Buschelman b->bs2 = bs*bs; 1630a23d5eceSKris Buschelman b->mbs = mbs; 1631a23d5eceSKris Buschelman b->nbs = mbs; 1632a23d5eceSKris Buschelman b->Mbs = Mbs; 1633a23d5eceSKris Buschelman b->Nbs = Mbs; 1634a23d5eceSKris Buschelman 1635a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1636d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1637a23d5eceSKris Buschelman } 1638d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1639d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1640a23d5eceSKris Buschelman 1641d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1642d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1643a23d5eceSKris Buschelman 1644526dfc15SBarry Smith if (!B->preallocated) { 1645f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1646d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16479c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 164852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1649f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1650d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16514aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 165252e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 165315bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1654526dfc15SBarry Smith } 1655a23d5eceSKris Buschelman 1656526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1657526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1658526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1659a23d5eceSKris Buschelman PetscFunctionReturn(0); 1660a23d5eceSKris Buschelman } 1661a23d5eceSKris Buschelman EXTERN_C_END 1662a23d5eceSKris Buschelman 16635c9eb25fSBarry Smith EXTERN_C_BEGIN 1664dfb205c3SBarry Smith #undef __FUNCT__ 1665dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1666dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1667dfb205c3SBarry Smith { 1668dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1669dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1670dfb205c3SBarry Smith const PetscInt *JJ=0; 1671dfb205c3SBarry Smith PetscScalar *values=0; 1672dfb205c3SBarry Smith PetscErrorCode ierr; 1673dfb205c3SBarry Smith 1674dfb205c3SBarry Smith PetscFunctionBegin; 1675dfb205c3SBarry Smith 1676dfb205c3SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1677dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1678dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1679dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1680dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1681dfb205c3SBarry Smith m = B->rmap->n/bs; 1682dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1683dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1684dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1685dfb205c3SBarry Smith 1686dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1687dfb205c3SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 1688dfb205c3SBarry Smith for (i=0; i<m; i++) { 1689dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1690dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1691dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1692dfb205c3SBarry Smith JJ = jj + ii[i]; 1693dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1694dfb205c3SBarry Smith if (*JJ >= cstart) break; 1695dfb205c3SBarry Smith JJ++; 1696dfb205c3SBarry Smith } 1697dfb205c3SBarry Smith d = 0; 1698dfb205c3SBarry Smith for (; j<nz; j++) { 1699dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1700dfb205c3SBarry Smith d++; 1701dfb205c3SBarry Smith } 1702dfb205c3SBarry Smith d_nnz[i] = d; 1703dfb205c3SBarry Smith o_nnz[i] = nz - d; 1704dfb205c3SBarry Smith } 1705dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1706dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1707dfb205c3SBarry Smith 1708dfb205c3SBarry Smith values = (PetscScalar*)V; 1709dfb205c3SBarry Smith if (!values) { 1710dfb205c3SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 1711dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1712dfb205c3SBarry Smith } 1713dfb205c3SBarry Smith for (i=0; i<m; i++) { 1714dfb205c3SBarry Smith PetscInt row = i + rstart; 1715dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1716dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1717dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1718dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1719dfb205c3SBarry Smith } 1720dfb205c3SBarry Smith 1721dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1722dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1723dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1724dfb205c3SBarry Smith 1725dfb205c3SBarry Smith PetscFunctionReturn(0); 1726dfb205c3SBarry Smith } 1727dfb205c3SBarry Smith EXTERN_C_END 1728dfb205c3SBarry Smith 1729dfb205c3SBarry Smith EXTERN_C_BEGIN 1730611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1731bccb9932SShri Abhyankar extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1732611f576cSBarry Smith #endif 1733611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 17345c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1735611f576cSBarry Smith #endif 1736b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1737b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1738b5e56a35SBarry Smith #endif 17395c9eb25fSBarry Smith EXTERN_C_END 17405c9eb25fSBarry Smith 17410bad9183SKris Buschelman /*MC 1742fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 17430bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 17440bad9183SKris Buschelman 17450bad9183SKris Buschelman Options Database Keys: 17460bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17470bad9183SKris Buschelman 17480bad9183SKris Buschelman Level: beginner 17490bad9183SKris Buschelman 17500bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17510bad9183SKris Buschelman M*/ 17520bad9183SKris Buschelman 1753a23d5eceSKris Buschelman EXTERN_C_BEGIN 1754a23d5eceSKris Buschelman #undef __FUNCT__ 17554a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1756be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1757b5df2d14SHong Zhang { 1758b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1759dfbe8321SBarry Smith PetscErrorCode ierr; 1760ace3abfcSBarry Smith PetscBool flg; 1761b5df2d14SHong Zhang 1762b5df2d14SHong Zhang PetscFunctionBegin; 1763b5df2d14SHong Zhang 176438f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1765b0a32e0cSBarry Smith B->data = (void*)b; 1766b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1767b5df2d14SHong Zhang 1768b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1769b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1770b5df2d14SHong Zhang B->mapping = 0; 1771b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1772b5df2d14SHong Zhang 1773b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 17747adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 17757adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1776b5df2d14SHong Zhang 1777b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1778899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1779b5df2d14SHong Zhang 1780b5df2d14SHong Zhang /* build cache for off array entries formed */ 17817adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1782b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1783b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1784b5df2d14SHong Zhang b->garray = PETSC_NULL; 1785b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1786b5df2d14SHong Zhang 1787b5df2d14SHong Zhang /* stuff used in block assembly */ 1788b5df2d14SHong Zhang b->barray = 0; 1789b5df2d14SHong Zhang 1790b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1791b5df2d14SHong Zhang b->lvec = 0; 1792b5df2d14SHong Zhang b->Mvctx = 0; 179340781036SHong Zhang b->slvec0 = 0; 179440781036SHong Zhang b->slvec0b = 0; 179540781036SHong Zhang b->slvec1 = 0; 179640781036SHong Zhang b->slvec1a = 0; 179740781036SHong Zhang b->slvec1b = 0; 179840781036SHong Zhang b->sMvctx = 0; 1799b5df2d14SHong Zhang 1800b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1801b5df2d14SHong Zhang b->rowindices = 0; 1802b5df2d14SHong Zhang b->rowvalues = 0; 1803b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1804b5df2d14SHong Zhang 1805b5df2d14SHong Zhang /* hash table stuff */ 1806b5df2d14SHong Zhang b->ht = 0; 1807b5df2d14SHong Zhang b->hd = 0; 1808b5df2d14SHong Zhang b->ht_size = 0; 1809b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1810b5df2d14SHong Zhang b->ht_fact = 0; 1811b5df2d14SHong Zhang b->ht_total_ct = 0; 1812b5df2d14SHong Zhang b->ht_insert_ct = 0; 1813b5df2d14SHong Zhang 181459ffdab8SBarry Smith b->in_loc = 0; 181559ffdab8SBarry Smith b->v_loc = 0; 181659ffdab8SBarry Smith b->n_loc = 0; 18177adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 1818acfcf0e5SJed Brown ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1819b5df2d14SHong Zhang if (flg) { 1820f6275e2eSBarry Smith PetscReal fact = 1.39; 18214e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 18228c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1823b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1824b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18251e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1826b5df2d14SHong Zhang } 18278c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18288c07d4e3SBarry Smith 1829b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1830ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1831b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1832b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1833b5e56a35SBarry Smith #endif 1834611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1835ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 1836bccb9932SShri Abhyankar "MatGetFactor_sbaij_mumps", 1837bccb9932SShri Abhyankar MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1838611f576cSBarry Smith #endif 1839611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1840ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 18415c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 18425c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1843611f576cSBarry Smith #endif 1844b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1845b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1846b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1847b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1848b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1849b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1850b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1851b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1852b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1853a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1854a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1855a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1856dfb205c3SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C", 1857dfb205c3SBarry Smith "MatMPISBAIJSetPreallocationCSR_MPISBAIJ", 1858dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 185923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 186023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 186123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 186223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 186317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1864b5df2d14SHong Zhang PetscFunctionReturn(0); 1865b5df2d14SHong Zhang } 1866273d9f13SBarry Smith EXTERN_C_END 1867b5df2d14SHong Zhang 1868209238afSKris Buschelman /*MC 1869002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1870209238afSKris Buschelman 1871209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1872209238afSKris Buschelman and MATMPISBAIJ otherwise. 1873209238afSKris Buschelman 1874209238afSKris Buschelman Options Database Keys: 1875209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1876209238afSKris Buschelman 1877209238afSKris Buschelman Level: beginner 1878209238afSKris Buschelman 1879209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1880209238afSKris Buschelman M*/ 1881209238afSKris Buschelman 1882209238afSKris Buschelman EXTERN_C_BEGIN 1883209238afSKris Buschelman #undef __FUNCT__ 1884209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1885be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1886dfbe8321SBarry Smith { 18876849ba73SBarry Smith PetscErrorCode ierr; 18881302d50aSBarry Smith PetscMPIInt size; 1889209238afSKris Buschelman 1890209238afSKris Buschelman PetscFunctionBegin; 18917adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1892209238afSKris Buschelman if (size == 1) { 1893209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1894209238afSKris Buschelman } else { 1895209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1896209238afSKris Buschelman } 1897209238afSKris Buschelman PetscFunctionReturn(0); 1898209238afSKris Buschelman } 1899209238afSKris Buschelman EXTERN_C_END 1900209238afSKris Buschelman 19014a2ae208SSatish Balay #undef __FUNCT__ 19024a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1903b5df2d14SHong Zhang /*@C 1904b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1905b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1906b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1907b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1908b5df2d14SHong Zhang 1909b5df2d14SHong Zhang Collective on Mat 1910b5df2d14SHong Zhang 1911b5df2d14SHong Zhang Input Parameters: 1912b5df2d14SHong Zhang + A - the matrix 1913b5df2d14SHong Zhang . bs - size of blockk 1914b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1915b5df2d14SHong Zhang submatrix (same for all local rows) 1916b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 19176d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 19186d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 19196d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1920b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1921b5df2d14SHong Zhang submatrix (same for all local rows). 1922b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1923b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1924b5df2d14SHong Zhang each block row) or PETSC_NULL. 1925b5df2d14SHong Zhang 1926b5df2d14SHong Zhang 1927b5df2d14SHong Zhang Options Database Keys: 1928b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1929b5df2d14SHong Zhang block calculations (much slower) 1930b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1931b5df2d14SHong Zhang 1932b5df2d14SHong Zhang Notes: 1933b5df2d14SHong Zhang 1934b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1935b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1936b5df2d14SHong Zhang 193749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 193849a6f317SBarry Smith 1939b5df2d14SHong Zhang Storage Information: 1940b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1941b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1942b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1943b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1944b5df2d14SHong Zhang 1945b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1946b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1947b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1948b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1949b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1950b5df2d14SHong Zhang 1951aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1952aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1953aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1954aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1955aa95bbe8SBarry Smith 1956b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1957b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1958b5df2d14SHong Zhang 1959b5df2d14SHong Zhang .vb 1960b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1961b5df2d14SHong Zhang ------------------- 1962b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1963b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1964b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1965b5df2d14SHong Zhang ------------------- 1966b5df2d14SHong Zhang .ve 1967b5df2d14SHong Zhang 1968b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1969b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19706d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19716d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1972b5df2d14SHong Zhang 19736d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19746d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1975*bf831d64SJed Brown and o_nz should indicate the number of block nonzeros per row in the upper triangular 1976*bf831d64SJed Brown part of the o matrix. 1977b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1978b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1979b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1980b5df2d14SHong Zhang matrices. 1981b5df2d14SHong Zhang 1982b5df2d14SHong Zhang Level: intermediate 1983b5df2d14SHong Zhang 1984b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1985b5df2d14SHong Zhang 1986b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1987b5df2d14SHong Zhang @*/ 1988be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1989b5df2d14SHong Zhang { 19904ac538c5SBarry Smith PetscErrorCode ierr; 1991b5df2d14SHong Zhang 1992b5df2d14SHong Zhang PetscFunctionBegin; 19934ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1994b5df2d14SHong Zhang PetscFunctionReturn(0); 1995b5df2d14SHong Zhang } 1996b5df2d14SHong Zhang 19974a2ae208SSatish Balay #undef __FUNCT__ 19984a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1999a30f8f8cSSatish Balay /*@C 2000a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2001a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2002a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2003a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2004a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2005a30f8f8cSSatish Balay 2006a30f8f8cSSatish Balay Collective on MPI_Comm 2007a30f8f8cSSatish Balay 2008a30f8f8cSSatish Balay Input Parameters: 2009a30f8f8cSSatish Balay + comm - MPI communicator 2010a30f8f8cSSatish Balay . bs - size of blockk 2011a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2012a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2013a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2014a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2015a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2016a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2017a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2018a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2019a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2020a30f8f8cSSatish Balay submatrix (same for all local rows) 2021a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 20226d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 20236d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 20246d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 2025a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2026a30f8f8cSSatish Balay submatrix (same for all local rows). 2027a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2028a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 2029a30f8f8cSSatish Balay each block row) or PETSC_NULL. 2030a30f8f8cSSatish Balay 2031a30f8f8cSSatish Balay Output Parameter: 2032a30f8f8cSSatish Balay . A - the matrix 2033a30f8f8cSSatish Balay 2034a30f8f8cSSatish Balay Options Database Keys: 2035a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2036a30f8f8cSSatish Balay block calculations (much slower) 2037a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2038a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2039a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2040a30f8f8cSSatish Balay 2041175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2042ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2043175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2044175b88e8SBarry Smith 2045a30f8f8cSSatish Balay Notes: 2046d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20476d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2048d1be2dadSMatthew Knepley 2049a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2050a30f8f8cSSatish Balay (possibly both). 2051a30f8f8cSSatish Balay 2052a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2053a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2054a30f8f8cSSatish Balay 205549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 205649a6f317SBarry Smith 2057a30f8f8cSSatish Balay Storage Information: 2058a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2059a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2060a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2061a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2062a30f8f8cSSatish Balay 2063a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2064a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 2065a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2066a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2067a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2068a30f8f8cSSatish Balay 2069a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2070a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay .vb 2073a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2074a30f8f8cSSatish Balay ------------------- 2075a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2076a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2077a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2078a30f8f8cSSatish Balay ------------------- 2079a30f8f8cSSatish Balay .ve 2080a30f8f8cSSatish Balay 2081a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2082a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20836d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20846d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2085a30f8f8cSSatish Balay 20866d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20876d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2088a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2089a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2090a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2091a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2092a30f8f8cSSatish Balay matrices. 2093a30f8f8cSSatish Balay 2094a30f8f8cSSatish Balay Level: intermediate 2095a30f8f8cSSatish Balay 2096a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2097a30f8f8cSSatish Balay 2098a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2099a30f8f8cSSatish Balay @*/ 2100a30f8f8cSSatish Balay 2101be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2102a30f8f8cSSatish Balay { 21036849ba73SBarry Smith PetscErrorCode ierr; 21041302d50aSBarry Smith PetscMPIInt size; 2105a30f8f8cSSatish Balay 2106a30f8f8cSSatish Balay PetscFunctionBegin; 2107f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2108f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2109273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2110273d9f13SBarry Smith if (size > 1) { 2111b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2112b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2113273d9f13SBarry Smith } else { 2114273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2115273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2116273d9f13SBarry Smith } 2117a30f8f8cSSatish Balay PetscFunctionReturn(0); 2118a30f8f8cSSatish Balay } 2119a30f8f8cSSatish Balay 2120a30f8f8cSSatish Balay 21214a2ae208SSatish Balay #undef __FUNCT__ 21224a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 21236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2124a30f8f8cSSatish Balay { 2125a30f8f8cSSatish Balay Mat mat; 2126a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2127dfbe8321SBarry Smith PetscErrorCode ierr; 2128d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2129387bc808SHong Zhang PetscScalar *array; 2130a30f8f8cSSatish Balay 2131a30f8f8cSSatish Balay PetscFunctionBegin; 2132a30f8f8cSSatish Balay *newmat = 0; 21337adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2134d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21357adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21361d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 213726283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 213826283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2139e1b6402fSHong Zhang 2140d5f3da31SBarry Smith mat->factortype = matin->factortype; 2141273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 214282327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21437fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21447fff6886SHong Zhang 2145b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2146a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2147a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2148a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2149a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2150a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2151a30f8f8cSSatish Balay 2152899cda47SBarry Smith 2153a30f8f8cSSatish Balay a->size = oldmat->size; 2154a30f8f8cSSatish Balay a->rank = oldmat->rank; 2155a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2156a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2157a30f8f8cSSatish Balay a->rowindices = 0; 2158a30f8f8cSSatish Balay a->rowvalues = 0; 2159a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2160a30f8f8cSSatish Balay a->barray = 0; 2161899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2162899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2163899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2164899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2165a30f8f8cSSatish Balay 2166a30f8f8cSSatish Balay /* hash table stuff */ 2167a30f8f8cSSatish Balay a->ht = 0; 2168a30f8f8cSSatish Balay a->hd = 0; 2169a30f8f8cSSatish Balay a->ht_size = 0; 2170a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2171a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2172a30f8f8cSSatish Balay a->ht_total_ct = 0; 2173a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2174a30f8f8cSSatish Balay 2175899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2176a30f8f8cSSatish Balay if (oldmat->colmap) { 2177a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2178a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay #else 21801302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 218152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21821302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2183a30f8f8cSSatish Balay #endif 2184a30f8f8cSSatish Balay } else a->colmap = 0; 2185387bc808SHong Zhang 2186a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21871302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 218852e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21891302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2190a30f8f8cSSatish Balay } else a->garray = 0; 2191a30f8f8cSSatish Balay 2192533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 219452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2195a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 219652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 219782327fa8SHong Zhang 219882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 219952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 220082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 220152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2202387bc808SHong Zhang 2203387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 22041ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2205387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2206387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 22071ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 22081ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2209387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 22101ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 221152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 221252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 221352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 221452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 221552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2216387bc808SHong Zhang 2217387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2218387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2219387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 222052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 222182327fa8SHong Zhang 2222a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 222352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2224a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 222552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 22267adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay *newmat = mat; 2228a30f8f8cSSatish Balay PetscFunctionReturn(0); 2229a30f8f8cSSatish Balay } 2230a30f8f8cSSatish Balay 22314a2ae208SSatish Balay #undef __FUNCT__ 22325bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2233112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 223495936485SShri Abhyankar { 223595936485SShri Abhyankar PetscErrorCode ierr; 223695936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 223795936485SShri Abhyankar PetscScalar *vals,*buf; 223895936485SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 223995936485SShri Abhyankar MPI_Status status; 224095936485SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 224195936485SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 224295936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 224395936485SShri Abhyankar PetscInt bs=1,Mbs,mbs,extra_rows; 224495936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 224595936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 224695936485SShri Abhyankar int fd; 224795936485SShri Abhyankar 224895936485SShri Abhyankar PetscFunctionBegin; 224995936485SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 225095936485SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 225195936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 225295936485SShri Abhyankar 225395936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 225495936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 225595936485SShri Abhyankar if (!rank) { 225695936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 225795936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 225895936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 225995936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 226095936485SShri Abhyankar } 226195936485SShri Abhyankar 226295936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 226395936485SShri Abhyankar 226495936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 226595936485SShri Abhyankar M = header[1]; N = header[2]; 226695936485SShri Abhyankar 226795936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 226895936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 226995936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 227095936485SShri Abhyankar 227195936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 227295936485SShri Abhyankar if (sizesset) { 227395936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 227495936485SShri Abhyankar } 2275abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2276abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 227795936485SShri Abhyankar 227895936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 227995936485SShri Abhyankar 228095936485SShri Abhyankar /* 228195936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 228295936485SShri Abhyankar divisible by the blocksize 228395936485SShri Abhyankar */ 228495936485SShri Abhyankar Mbs = M/bs; 228595936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 228695936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 228795936485SShri Abhyankar else Mbs++; 228895936485SShri Abhyankar if (extra_rows &&!rank) { 228995936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 229095936485SShri Abhyankar } 229195936485SShri Abhyankar 229295936485SShri Abhyankar /* determine ownership of all rows */ 229395936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 229495936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 229595936485SShri Abhyankar m = mbs*bs; 229695936485SShri Abhyankar } else { /* User Set */ 229795936485SShri Abhyankar m = newmat->rmap->n; 229895936485SShri Abhyankar mbs = m/bs; 229995936485SShri Abhyankar } 230095936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 230195936485SShri Abhyankar mmbs = PetscMPIIntCast(mbs); 230295936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 230395936485SShri Abhyankar rowners[0] = 0; 230495936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 230595936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 230695936485SShri Abhyankar rstart = rowners[rank]; 230795936485SShri Abhyankar rend = rowners[rank+1]; 230895936485SShri Abhyankar 230995936485SShri Abhyankar /* distribute row lengths to all processors */ 231095936485SShri Abhyankar ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 231195936485SShri Abhyankar if (!rank) { 231295936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 231395936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 231495936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 231595936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 231695936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 231795936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 231895936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 231995936485SShri Abhyankar } else { 232095936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 232195936485SShri Abhyankar } 232295936485SShri Abhyankar 232395936485SShri Abhyankar if (!rank) { /* procs[0] */ 232495936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 232595936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 232695936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 232795936485SShri Abhyankar for (i=0; i<size; i++) { 232895936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 232995936485SShri Abhyankar procsnz[i] += rowlengths[j]; 233095936485SShri Abhyankar } 233195936485SShri Abhyankar } 233295936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 233395936485SShri Abhyankar 233495936485SShri Abhyankar /* determine max buffer needed and allocate it */ 233595936485SShri Abhyankar maxnz = 0; 233695936485SShri Abhyankar for (i=0; i<size; i++) { 233795936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 233895936485SShri Abhyankar } 233995936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 234095936485SShri Abhyankar 234195936485SShri Abhyankar /* read in my part of the matrix column indices */ 234295936485SShri Abhyankar nz = procsnz[0]; 234395936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 234495936485SShri Abhyankar mycols = ibuf; 234595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 234695936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 234795936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 234895936485SShri Abhyankar 234995936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 235095936485SShri Abhyankar for (i=1; i<size-1; i++) { 235195936485SShri Abhyankar nz = procsnz[i]; 235295936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 235395936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 235495936485SShri Abhyankar } 235595936485SShri Abhyankar /* read in the stuff for the last proc */ 235695936485SShri Abhyankar if (size != 1) { 235795936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 235895936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 235995936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 236095936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 236195936485SShri Abhyankar } 236295936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 236395936485SShri Abhyankar } else { /* procs[i], i>0 */ 236495936485SShri Abhyankar /* determine buffer space needed for message */ 236595936485SShri Abhyankar nz = 0; 236695936485SShri Abhyankar for (i=0; i<m; i++) { 236795936485SShri Abhyankar nz += locrowlens[i]; 236895936485SShri Abhyankar } 236995936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 237095936485SShri Abhyankar mycols = ibuf; 237195936485SShri Abhyankar /* receive message of column indices*/ 237295936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 237395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 237495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 237595936485SShri Abhyankar } 237695936485SShri Abhyankar 237795936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 237895936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 237995936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 238095936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 238195936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 238295936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 238395936485SShri Abhyankar rowcount = 0; 238495936485SShri Abhyankar nzcount = 0; 238595936485SShri Abhyankar for (i=0; i<mbs; i++) { 238695936485SShri Abhyankar dcount = 0; 238795936485SShri Abhyankar odcount = 0; 238895936485SShri Abhyankar for (j=0; j<bs; j++) { 238995936485SShri Abhyankar kmax = locrowlens[rowcount]; 239095936485SShri Abhyankar for (k=0; k<kmax; k++) { 239195936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 239295936485SShri Abhyankar if (!mask[tmp]) { 239395936485SShri Abhyankar mask[tmp] = 1; 239495936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 239595936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 239695936485SShri Abhyankar } 239795936485SShri Abhyankar } 239895936485SShri Abhyankar rowcount++; 239995936485SShri Abhyankar } 240095936485SShri Abhyankar 240195936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 240295936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 240395936485SShri Abhyankar 240495936485SShri Abhyankar /* zero out the mask elements we set */ 240595936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 240695936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 240795936485SShri Abhyankar } 240895936485SShri Abhyankar if (!sizesset) { 240995936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 241095936485SShri Abhyankar } 241195936485SShri Abhyankar ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 241295936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 241395936485SShri Abhyankar 241495936485SShri Abhyankar if (!rank) { 241595936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 241695936485SShri Abhyankar /* read in my part of the matrix numerical values */ 241795936485SShri Abhyankar nz = procsnz[0]; 241895936485SShri Abhyankar vals = buf; 241995936485SShri Abhyankar mycols = ibuf; 242095936485SShri Abhyankar if (size == 1) nz -= extra_rows; 242195936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 242295936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 242395936485SShri Abhyankar 242495936485SShri Abhyankar /* insert into matrix */ 242595936485SShri Abhyankar jj = rstart*bs; 242695936485SShri Abhyankar for (i=0; i<m; i++) { 242795936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 242895936485SShri Abhyankar mycols += locrowlens[i]; 242995936485SShri Abhyankar vals += locrowlens[i]; 243095936485SShri Abhyankar jj++; 243195936485SShri Abhyankar } 243295936485SShri Abhyankar 243395936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 243495936485SShri Abhyankar for (i=1; i<size-1; i++) { 243595936485SShri Abhyankar nz = procsnz[i]; 243695936485SShri Abhyankar vals = buf; 243795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 243895936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 243995936485SShri Abhyankar } 244095936485SShri Abhyankar /* the last proc */ 244195936485SShri Abhyankar if (size != 1){ 244295936485SShri Abhyankar nz = procsnz[i] - extra_rows; 244395936485SShri Abhyankar vals = buf; 244495936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 244595936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 244695936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 244795936485SShri Abhyankar } 244895936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 244995936485SShri Abhyankar 245095936485SShri Abhyankar } else { 245195936485SShri Abhyankar /* receive numeric values */ 245295936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 245395936485SShri Abhyankar 245495936485SShri Abhyankar /* receive message of values*/ 245595936485SShri Abhyankar vals = buf; 245695936485SShri Abhyankar mycols = ibuf; 245795936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 245895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 245995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 246095936485SShri Abhyankar 246195936485SShri Abhyankar /* insert into matrix */ 246295936485SShri Abhyankar jj = rstart*bs; 246395936485SShri Abhyankar for (i=0; i<m; i++) { 246495936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 246595936485SShri Abhyankar mycols += locrowlens[i]; 246695936485SShri Abhyankar vals += locrowlens[i]; 246795936485SShri Abhyankar jj++; 246895936485SShri Abhyankar } 246995936485SShri Abhyankar } 247095936485SShri Abhyankar 247195936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 247295936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 247395936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 247495936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 247595936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 247695936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 247795936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 247895936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 247995936485SShri Abhyankar PetscFunctionReturn(0); 248095936485SShri Abhyankar } 248195936485SShri Abhyankar 248295936485SShri Abhyankar #undef __FUNCT__ 24834a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2484dcf5cc72SBarry Smith /*XXXXX@ 2485a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2486a30f8f8cSSatish Balay 2487a30f8f8cSSatish Balay Input Parameters: 2488a30f8f8cSSatish Balay . mat - the matrix 2489a30f8f8cSSatish Balay . fact - factor 2490a30f8f8cSSatish Balay 2491c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2492a30f8f8cSSatish Balay 2493a30f8f8cSSatish Balay Level: advanced 2494a30f8f8cSSatish Balay 2495a30f8f8cSSatish Balay Notes: 2496a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2497a30f8f8cSSatish Balay 2498a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2499a30f8f8cSSatish Balay 2500a30f8f8cSSatish Balay .seealso: MatSetOption() 2501dcf5cc72SBarry Smith @XXXXX*/ 2502dcf5cc72SBarry Smith 250324d5174aSHong Zhang 25044a2ae208SSatish Balay #undef __FUNCT__ 2505985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2506985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 250724d5174aSHong Zhang { 250824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2509f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2510ca54ac64SHong Zhang PetscReal atmp; 251187828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2512dfbe8321SBarry Smith PetscErrorCode ierr; 25131302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25141302d50aSBarry Smith PetscMPIInt rank,size; 25151302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 251687828ca2SBarry Smith PetscScalar *va; 25178a1c53f2SBarry Smith MatScalar *ba; 2518f4c0e9e4SHong Zhang MPI_Status stat; 251924d5174aSHong Zhang 252024d5174aSHong Zhang PetscFunctionBegin; 2521e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2522985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 25231ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2524f4c0e9e4SHong Zhang 25257adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 25267adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2527f4c0e9e4SHong Zhang 2528d0f46423SBarry Smith bs = A->rmap->bs; 2529f4c0e9e4SHong Zhang mbs = a->mbs; 2530f4c0e9e4SHong Zhang Mbs = a->Mbs; 2531f4c0e9e4SHong Zhang ba = b->a; 2532f4c0e9e4SHong Zhang bi = b->i; 2533f4c0e9e4SHong Zhang bj = b->j; 2534f4c0e9e4SHong Zhang 2535f4c0e9e4SHong Zhang /* find ownerships */ 2536d0f46423SBarry Smith rowners_bs = A->rmap->range; 2537f4c0e9e4SHong Zhang 2538f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 253982502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2540ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2541f4c0e9e4SHong Zhang 2542f4c0e9e4SHong Zhang /* row_max for B */ 2543b8475685SHong Zhang if (rank != size-1){ 2544f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2545f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2546f4c0e9e4SHong Zhang brow = bs*i; 2547f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2548f4c0e9e4SHong Zhang bcol = bs*(*bj); 2549f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2550ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 255104d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2552f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2553f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2554ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2555ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2556f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2557f4c0e9e4SHong Zhang } 2558f4c0e9e4SHong Zhang } 2559f4c0e9e4SHong Zhang bj++; 2560f4c0e9e4SHong Zhang } 2561f4c0e9e4SHong Zhang } 2562f4c0e9e4SHong Zhang 2563f4c0e9e4SHong Zhang /* send values to its owners */ 2564f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2565f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2566ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 25677adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2568ca54ac64SHong Zhang } 2569f4c0e9e4SHong Zhang } 2570f4c0e9e4SHong Zhang 2571f4c0e9e4SHong Zhang /* receive values */ 2572ca54ac64SHong Zhang if (rank){ 2573f4c0e9e4SHong Zhang rvalues = work; 2574ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2575f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 25767adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2577f4c0e9e4SHong Zhang /* process values */ 2578f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2579ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2580f4c0e9e4SHong Zhang } 2581f4c0e9e4SHong Zhang } 2582ca54ac64SHong Zhang } 2583f4c0e9e4SHong Zhang 25841ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2585ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 258624d5174aSHong Zhang PetscFunctionReturn(0); 258724d5174aSHong Zhang } 25882798e883SHong Zhang 25892798e883SHong Zhang #undef __FUNCT__ 259041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 259141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25922798e883SHong Zhang { 25932798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2594dfbe8321SBarry Smith PetscErrorCode ierr; 2595d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25963649974fSBarry Smith PetscScalar *x,*ptr,*from; 2597ffe4fb16SHong Zhang Vec bb1; 25983649974fSBarry Smith const PetscScalar *b; 2599ffe4fb16SHong Zhang 2600ffe4fb16SHong Zhang PetscFunctionBegin; 2601e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2602e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2603ffe4fb16SHong Zhang 2604a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 260541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2606a2b30743SBarry Smith PetscFunctionReturn(0); 2607a2b30743SBarry Smith } 2608a2b30743SBarry Smith 2609ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2610ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 261141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2612ffe4fb16SHong Zhang its--; 2613ffe4fb16SHong Zhang } 2614ffe4fb16SHong Zhang 2615ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2616ffe4fb16SHong Zhang while (its--){ 2617ffe4fb16SHong Zhang 2618ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2619ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2620ffe4fb16SHong Zhang 2621ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26221ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26231ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2624ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26251ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2626ffe4fb16SHong Zhang 2627efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2628ffe4fb16SHong Zhang 2629ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26301ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 26313649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2632ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26331ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2634ffe4fb16SHong Zhang 2635ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2636fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2637ffe4fb16SHong Zhang 2638ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26391ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2640a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2641ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2642ffe4fb16SHong Zhang 2643ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2644ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2645ffe4fb16SHong Zhang 2646ffe4fb16SHong Zhang /* local diagonal sweep */ 264741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2648ffe4fb16SHong Zhang } 2649ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2650fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 265141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2652fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 265341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2654fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2655fa22f6d0SBarry Smith Vec xx1; 2656ace3abfcSBarry Smith PetscBool hasop; 265720f1ed55SBarry Smith const PetscScalar *diag; 2658887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 265920f1ed55SBarry Smith PetscInt i,n; 2660fa22f6d0SBarry Smith 2661fa22f6d0SBarry Smith if (!mat->xx1) { 2662fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2663fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2664fa22f6d0SBarry Smith } 2665fa22f6d0SBarry Smith xx1 = mat->xx1; 2666fa22f6d0SBarry Smith bb1 = mat->bb1; 2667fa22f6d0SBarry Smith 266841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2669fa22f6d0SBarry Smith 2670fa22f6d0SBarry Smith if (!mat->diag) { 2671effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2672fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2673fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2674fa22f6d0SBarry Smith } 2675fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2676fa22f6d0SBarry Smith 2677fa22f6d0SBarry Smith if (hasop) { 2678fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2679887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 268020f1ed55SBarry Smith } else { 268120f1ed55SBarry Smith /* 268220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 268320f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2684887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 268520f1ed55SBarry Smith */ 268620f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26873649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26883649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 268920f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 269020f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2691887ee2caSBarry Smith if (omega == 1.0) { 269220f1ed55SBarry Smith for (i=0; i<n; i++) { 269320f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 269420f1ed55SBarry Smith } 269520f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2696887ee2caSBarry Smith } else { 2697887ee2caSBarry Smith for (i=0; i<n; i++) { 2698887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2699887ee2caSBarry Smith } 2700887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2701887ee2caSBarry Smith } 270220f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27033649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27043649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 270520f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 270620f1ed55SBarry Smith } 2707fa22f6d0SBarry Smith 2708fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2709fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2710fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2711fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2712fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2713fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2714fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2715fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2716fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2717fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2718effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2719fa22f6d0SBarry Smith 2720fa22f6d0SBarry Smith /* local sweep */ 272141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2722fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2723ffe4fb16SHong Zhang } else { 2724e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2725ffe4fb16SHong Zhang } 2726ffe4fb16SHong Zhang PetscFunctionReturn(0); 2727ffe4fb16SHong Zhang } 2728ffe4fb16SHong Zhang 2729ffe4fb16SHong Zhang #undef __FUNCT__ 273041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 273141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2732ffe4fb16SHong Zhang { 2733ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2734dfbe8321SBarry Smith PetscErrorCode ierr; 27352798e883SHong Zhang Vec lvec1,bb1; 27362798e883SHong Zhang 27372798e883SHong Zhang PetscFunctionBegin; 2738e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2739e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27402798e883SHong Zhang 2741c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 27422798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 274341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27442798e883SHong Zhang its--; 27452798e883SHong Zhang } 27462798e883SHong Zhang 27472798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27482798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27492798e883SHong Zhang while (its--){ 2750ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27512798e883SHong Zhang 27522798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27532798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2754efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27552798e883SHong Zhang 2756ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27572798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2758ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27592798e883SHong Zhang 27602798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2761efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27622798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27632798e883SHong Zhang 2764ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27652798e883SHong Zhang 2766c14dc6b6SHong Zhang /* diagonal sweep */ 276741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27682798e883SHong Zhang } 27692798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 27702798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2771c14dc6b6SHong Zhang } else { 2772e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2773c14dc6b6SHong Zhang } 27742798e883SHong Zhang PetscFunctionReturn(0); 27752798e883SHong Zhang } 27762798e883SHong Zhang 2777dfb205c3SBarry Smith #undef __FUNCT__ 2778dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2779dfb205c3SBarry Smith /*@ 2780dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2781dfb205c3SBarry Smith CSR format the local rows. 2782dfb205c3SBarry Smith 2783dfb205c3SBarry Smith Collective on MPI_Comm 2784dfb205c3SBarry Smith 2785dfb205c3SBarry Smith Input Parameters: 2786dfb205c3SBarry Smith + comm - MPI communicator 2787dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2788dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2789dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2790dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2791dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2792dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2793dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2794dfb205c3SBarry Smith . i - row indices 2795dfb205c3SBarry Smith . j - column indices 2796dfb205c3SBarry Smith - a - matrix values 2797dfb205c3SBarry Smith 2798dfb205c3SBarry Smith Output Parameter: 2799dfb205c3SBarry Smith . mat - the matrix 2800dfb205c3SBarry Smith 2801dfb205c3SBarry Smith Level: intermediate 2802dfb205c3SBarry Smith 2803dfb205c3SBarry Smith Notes: 2804dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2805dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2806dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2807dfb205c3SBarry Smith 2808dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2809dfb205c3SBarry Smith 2810dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2811dfb205c3SBarry Smith 2812dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 2813dfb205c3SBarry Smith MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithSplitArrays() 2814dfb205c3SBarry Smith @*/ 2815dfb205c3SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2816dfb205c3SBarry Smith { 2817dfb205c3SBarry Smith PetscErrorCode ierr; 2818dfb205c3SBarry Smith 2819dfb205c3SBarry Smith 2820dfb205c3SBarry Smith PetscFunctionBegin; 2821dfb205c3SBarry Smith if (i[0]) { 2822dfb205c3SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2823dfb205c3SBarry Smith } 2824dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2825dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2826dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2827dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2828dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2829dfb205c3SBarry Smith PetscFunctionReturn(0); 2830dfb205c3SBarry Smith } 2831dfb205c3SBarry Smith 2832dfb205c3SBarry Smith 2833dfb205c3SBarry Smith #undef __FUNCT__ 2834dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2835dfb205c3SBarry Smith /*@C 2836dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2837dfb205c3SBarry Smith (the default parallel PETSc format). 2838dfb205c3SBarry Smith 2839dfb205c3SBarry Smith Collective on MPI_Comm 2840dfb205c3SBarry Smith 2841dfb205c3SBarry Smith Input Parameters: 2842dfb205c3SBarry Smith + A - the matrix 2843dfb205c3SBarry Smith . bs - the block size 2844dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2845dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2846dfb205c3SBarry Smith - v - optional values in the matrix 2847dfb205c3SBarry Smith 2848dfb205c3SBarry Smith Level: developer 2849dfb205c3SBarry Smith 2850dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2851dfb205c3SBarry Smith 2852dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2853dfb205c3SBarry Smith @*/ 2854dfb205c3SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2855dfb205c3SBarry Smith { 28564ac538c5SBarry Smith PetscErrorCode ierr; 2857dfb205c3SBarry Smith 2858dfb205c3SBarry Smith PetscFunctionBegin; 28594ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2860dfb205c3SBarry Smith PetscFunctionReturn(0); 2861dfb205c3SBarry Smith } 2862dfb205c3SBarry Smith 2863dfb205c3SBarry Smith 2864