173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 11a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 12a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 1387828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *); 1487828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode); 1587828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 36a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51a30f8f8cSSatish Balay int ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66a30f8f8cSSatish Balay int ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay /* 76a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 77a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 78a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 79a30f8f8cSSatish Balay length of colmap equals the global matrix length. 80a30f8f8cSSatish Balay */ 814a2ae208SSatish Balay #undef __FUNCT__ 824a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 83a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 84a30f8f8cSSatish Balay { 85a30f8f8cSSatish Balay PetscFunctionBegin; 8629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 88a30f8f8cSSatish Balay } 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define CHUNKSIZE 10 91a30f8f8cSSatish Balay 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 97a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto a_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11629bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 117a30f8f8cSSatish Balay if (nrow >= rmax) { \ 118a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 119a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 120a30f8f8cSSatish Balay MatScalar *new_a; \ 121a30f8f8cSSatish Balay \ 12229bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 123a30f8f8cSSatish Balay \ 124a30f8f8cSSatish Balay /* malloc new storage space */ \ 125a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12682502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 128a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 129a30f8f8cSSatish Balay \ 130a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 131a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 132a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 135a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13787828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 139a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay /* free up old matrix storage */ \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 143a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 144a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 145a30f8f8cSSatish Balay } \ 146a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 147a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 148a30f8f8cSSatish Balay \ 149a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 150a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 151b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 152a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 153a30f8f8cSSatish Balay a->reallocs++; \ 154a30f8f8cSSatish Balay a->s_nz++; \ 155a30f8f8cSSatish Balay } \ 156a30f8f8cSSatish Balay N = nrow++ - 1; \ 157a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 158a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 159a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 160a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 163a30f8f8cSSatish Balay rp[_i] = bcol; \ 164a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 165a30f8f8cSSatish Balay a_noinsert:; \ 166a30f8f8cSSatish Balay ailen[brow] = nrow; \ 167a30f8f8cSSatish Balay } 168a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 169a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 170a30f8f8cSSatish Balay { \ 171a30f8f8cSSatish Balay brow = row/bs; \ 172a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 173a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 174a30f8f8cSSatish Balay bcol = col/bs; \ 175a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 176a30f8f8cSSatish Balay low = 0; high = nrow; \ 177a30f8f8cSSatish Balay while (high-low > 3) { \ 178a30f8f8cSSatish Balay t = (low+high)/2; \ 179a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 180a30f8f8cSSatish Balay else low = t; \ 181a30f8f8cSSatish Balay } \ 182a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 183a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 184a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 185a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 186a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 187a30f8f8cSSatish Balay else *bap = value; \ 188a30f8f8cSSatish Balay goto b_noinsert; \ 189a30f8f8cSSatish Balay } \ 190a30f8f8cSSatish Balay } \ 191a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19229bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 193a30f8f8cSSatish Balay if (nrow >= rmax) { \ 194a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 195a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 196a30f8f8cSSatish Balay MatScalar *new_a; \ 197a30f8f8cSSatish Balay \ 19829bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 199a30f8f8cSSatish Balay \ 200a30f8f8cSSatish Balay /* malloc new storage space */ \ 201a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 204a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 205a30f8f8cSSatish Balay \ 206a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 207a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 208a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 211a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 215a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay /* free up old matrix storage */ \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 219a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 220a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 221a30f8f8cSSatish Balay } \ 222a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 223a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 224a30f8f8cSSatish Balay \ 225a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 226a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 227b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 228a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 229a30f8f8cSSatish Balay b->reallocs++; \ 230a30f8f8cSSatish Balay b->nz++; \ 231a30f8f8cSSatish Balay } \ 232a30f8f8cSSatish Balay N = nrow++ - 1; \ 233a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 234a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 235a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 236a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 237a30f8f8cSSatish Balay } \ 238a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 239a30f8f8cSSatish Balay rp[_i] = bcol; \ 240a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 241a30f8f8cSSatish Balay b_noinsert:; \ 242a30f8f8cSSatish Balay bilen[brow] = nrow; \ 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay #endif 245a30f8f8cSSatish Balay 246a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 24987828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 250a30f8f8cSSatish Balay { 251a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 252a30f8f8cSSatish Balay int ierr,i,N = m*n; 253a30f8f8cSSatish Balay MatScalar *vsingle; 254a30f8f8cSSatish Balay 255a30f8f8cSSatish Balay PetscFunctionBegin; 256a30f8f8cSSatish Balay if (N > b->setvalueslen) { 257a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 259a30f8f8cSSatish Balay b->setvalueslen = N; 260a30f8f8cSSatish Balay } 261a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 262a30f8f8cSSatish Balay 263a30f8f8cSSatish Balay for (i=0; i<N; i++) { 264a30f8f8cSSatish Balay vsingle[i] = v[i]; 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 267a30f8f8cSSatish Balay PetscFunctionReturn(0); 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 27287828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 273a30f8f8cSSatish Balay { 274a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 275a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 276a30f8f8cSSatish Balay MatScalar *vsingle; 277a30f8f8cSSatish Balay 278a30f8f8cSSatish Balay PetscFunctionBegin; 279a30f8f8cSSatish Balay if (N > b->setvalueslen) { 280a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 28182502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 282a30f8f8cSSatish Balay b->setvalueslen = N; 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 285a30f8f8cSSatish Balay for (i=0; i<N; i++) { 286a30f8f8cSSatish Balay vsingle[i] = v[i]; 287a30f8f8cSSatish Balay } 288a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 289a30f8f8cSSatish Balay PetscFunctionReturn(0); 290a30f8f8cSSatish Balay } 291a30f8f8cSSatish Balay 2924a2ae208SSatish Balay #undef __FUNCT__ 2934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 29487828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 295a30f8f8cSSatish Balay { 296a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 297a30f8f8cSSatish Balay int ierr,i,N = m*n; 298a30f8f8cSSatish Balay MatScalar *vsingle; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay PetscFunctionBegin; 30129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3024d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay 3054a2ae208SSatish Balay #undef __FUNCT__ 3064a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 30787828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 308a30f8f8cSSatish Balay { 309a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 310a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 311a30f8f8cSSatish Balay MatScalar *vsingle; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 31429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3154d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay #endif 318a30f8f8cSSatish Balay 319a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 320a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 321a30f8f8cSSatish Balay */ 3224a2ae208SSatish Balay #undef __FUNCT__ 3234a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 324a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 325a30f8f8cSSatish Balay { 326a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 327a30f8f8cSSatish Balay MatScalar value; 328b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 329a30f8f8cSSatish Balay int ierr,i,j,row,col; 330b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 331a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 332a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 333a30f8f8cSSatish Balay 334a30f8f8cSSatish Balay /* Some Variables required in the macro */ 335a30f8f8cSSatish Balay Mat A = baij->A; 336a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 337a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 338a30f8f8cSSatish Balay MatScalar *aa=a->a; 339a30f8f8cSSatish Balay 340a30f8f8cSSatish Balay Mat B = baij->B; 341a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 342a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 343a30f8f8cSSatish Balay MatScalar *ba=b->a; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 346a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 347a30f8f8cSSatish Balay MatScalar *ap,*bap; 348a30f8f8cSSatish Balay 349a30f8f8cSSatish Balay /* for stash */ 350f65c83cfSHong Zhang int n_loc, *in_loc=0; 351f65c83cfSHong Zhang MatScalar *v_loc=0; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay PetscFunctionBegin; 354a30f8f8cSSatish Balay 355a30f8f8cSSatish Balay if(!baij->donotstash){ 35682502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 360a30f8f8cSSatish Balay for (i=0; i<m; i++) { 361a30f8f8cSSatish Balay if (im[i] < 0) continue; 362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 363b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 364a30f8f8cSSatish Balay #endif 365a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 366a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 367a30f8f8cSSatish Balay for (j=0; j<n; j++) { 368f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 369a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 370a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 371a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 372a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 373a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 374a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 375a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 376a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 377a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 378b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 379a30f8f8cSSatish Balay #endif 380a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 381a30f8f8cSSatish Balay if (mat->was_assembled) { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 38771730473SSatish Balay col = col - 1; 388a30f8f8cSSatish Balay #else 38971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 392a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 393a30f8f8cSSatish Balay col = in[j]; 394a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 395a30f8f8cSSatish Balay B = baij->B; 396a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 397a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 398a30f8f8cSSatish Balay ba=b->a; 39971730473SSatish Balay } else col += in[j]%bs; 400a30f8f8cSSatish Balay } else col = in[j]; 401a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 402a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 403a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay } else { /* off processor entry */ 407a30f8f8cSSatish Balay if (!baij->donotstash) { 408a30f8f8cSSatish Balay n_loc = 0; 409a30f8f8cSSatish Balay for (j=0; j<n; j++){ 410f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 411a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 412a30f8f8cSSatish Balay if (roworiented) { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay n_loc++; 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay } 422a30f8f8cSSatish Balay } 423a30f8f8cSSatish Balay 424a30f8f8cSSatish Balay if(!baij->donotstash){ 425a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 426a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay PetscFunctionReturn(0); 429a30f8f8cSSatish Balay } 430a30f8f8cSSatish Balay 4314a2ae208SSatish Balay #undef __FUNCT__ 4324a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 4330880e062SHong Zhang int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 434a30f8f8cSSatish Balay { 4350880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4360880e062SHong Zhang MatScalar *value,*barray=baij->barray; 4370880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 4380880e062SHong Zhang int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 4390880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4400880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4410880e062SHong Zhang 442a30f8f8cSSatish Balay PetscFunctionBegin; 4430880e062SHong Zhang if(!barray) { 4440880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4450880e062SHong Zhang baij->barray = barray; 4460880e062SHong Zhang } 4470880e062SHong Zhang 4480880e062SHong Zhang if (roworiented) { 4490880e062SHong Zhang stepval = (n-1)*bs; 4500880e062SHong Zhang } else { 4510880e062SHong Zhang stepval = (m-1)*bs; 4520880e062SHong Zhang } 4530880e062SHong Zhang for (i=0; i<m; i++) { 4540880e062SHong Zhang if (im[i] < 0) continue; 4550880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4560880e062SHong Zhang if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs); 4570880e062SHong Zhang #endif 4580880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4590880e062SHong Zhang row = im[i] - rstart; 4600880e062SHong Zhang for (j=0; j<n; j++) { 4610880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4620880e062SHong Zhang if ((roworiented) && (n == 1)) { 4630880e062SHong Zhang barray = v + i*bs2; 4640880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 4650880e062SHong Zhang barray = v + j*bs2; 4660880e062SHong Zhang } else { /* Here a copy is required */ 4670880e062SHong Zhang if (roworiented) { 4680880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4690880e062SHong Zhang } else { 4700880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4710880e062SHong Zhang } 4720880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4730880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4740880e062SHong Zhang *barray++ = *value++; 4750880e062SHong Zhang } 4760880e062SHong Zhang } 4770880e062SHong Zhang barray -=bs2; 4780880e062SHong Zhang } 4790880e062SHong Zhang 4800880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4810880e062SHong Zhang col = in[j] - cstart; 4820880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4830880e062SHong Zhang } 4840880e062SHong Zhang else if (in[j] < 0) continue; 4850880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4860880e062SHong Zhang else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);} 4870880e062SHong Zhang #endif 4880880e062SHong Zhang else { 4890880e062SHong Zhang if (mat->was_assembled) { 4900880e062SHong Zhang if (!baij->colmap) { 4910880e062SHong Zhang ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 4920880e062SHong Zhang } 4930880e062SHong Zhang 4940880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4950880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4960880e062SHong Zhang { int data; 4970880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4980880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4990880e062SHong Zhang } 5000880e062SHong Zhang #else 5010880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 5020880e062SHong Zhang #endif 5030880e062SHong Zhang #endif 5040880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 5050880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5060880e062SHong Zhang col = (col - 1)/bs; 5070880e062SHong Zhang #else 5080880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5090880e062SHong Zhang #endif 5100880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5110880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5120880e062SHong Zhang col = in[j]; 5130880e062SHong Zhang } 5140880e062SHong Zhang } 5150880e062SHong Zhang else col = in[j]; 5160880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5170880e062SHong Zhang } 5180880e062SHong Zhang } 5190880e062SHong Zhang } else { 5200880e062SHong Zhang if (!baij->donotstash) { 5210880e062SHong Zhang if (roworiented) { 5220880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5230880e062SHong Zhang } else { 5240880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5250880e062SHong Zhang } 5260880e062SHong Zhang } 5270880e062SHong Zhang } 5280880e062SHong Zhang } 5290880e062SHong Zhang PetscFunctionReturn(0); 530a30f8f8cSSatish Balay } 531a30f8f8cSSatish Balay 532a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 533a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 534a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 535a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5364a2ae208SSatish Balay #undef __FUNCT__ 5374a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 538a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 539a30f8f8cSSatish Balay { 540a30f8f8cSSatish Balay PetscFunctionBegin; 54129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 54296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 543a30f8f8cSSatish Balay } 544a30f8f8cSSatish Balay 5454a2ae208SSatish Balay #undef __FUNCT__ 5464a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 547a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 548a30f8f8cSSatish Balay { 549a30f8f8cSSatish Balay PetscFunctionBegin; 55029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 552a30f8f8cSSatish Balay } 553a30f8f8cSSatish Balay 5544a2ae208SSatish Balay #undef __FUNCT__ 5554a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 55687828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 557a30f8f8cSSatish Balay { 558f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 559a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 560a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 561a30f8f8cSSatish Balay 562a30f8f8cSSatish Balay PetscFunctionBegin; 563a30f8f8cSSatish Balay for (i=0; i<m; i++) { 56429bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 565b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 566a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 567a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 568a30f8f8cSSatish Balay for (j=0; j<n; j++) { 56929bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 570b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 571a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 572a30f8f8cSSatish Balay col = idxn[j] - bscstart; 573c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 574a30f8f8cSSatish Balay } else { 575a30f8f8cSSatish Balay if (!baij->colmap) { 576a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 577a30f8f8cSSatish Balay } 578a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 579a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 580a30f8f8cSSatish Balay data --; 581a30f8f8cSSatish Balay #else 582a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 583a30f8f8cSSatish Balay #endif 584a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 585a30f8f8cSSatish Balay else { 586a30f8f8cSSatish Balay col = data + idxn[j]%bs; 587c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay } 591a30f8f8cSSatish Balay } else { 59229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 593a30f8f8cSSatish Balay } 594a30f8f8cSSatish Balay } 595a30f8f8cSSatish Balay PetscFunctionReturn(0); 596a30f8f8cSSatish Balay } 597a30f8f8cSSatish Balay 5984a2ae208SSatish Balay #undef __FUNCT__ 5994a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 600a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 601a30f8f8cSSatish Balay { 602a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 603bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 604bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 605a30f8f8cSSatish Balay int ierr; 606a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 607a30f8f8cSSatish Balay 608a30f8f8cSSatish Balay PetscFunctionBegin; 609a30f8f8cSSatish Balay if (baij->size == 1) { 610a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 611a30f8f8cSSatish Balay } else { 612a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 613f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 614a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 615a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 616a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 617a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 618a30f8f8cSSatish Balay /* 619a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 620a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 621a30f8f8cSSatish Balay */ 622d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 623a30f8f8cSSatish Balay /* 624a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 625a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 626a30f8f8cSSatish Balay 627a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 628a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 629a30f8f8cSSatish Balay } else { 63029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 631a30f8f8cSSatish Balay } 632a30f8f8cSSatish Balay } 633a30f8f8cSSatish Balay PetscFunctionReturn(0); 634a30f8f8cSSatish Balay } 635a30f8f8cSSatish Balay 636a30f8f8cSSatish Balay /* 637a30f8f8cSSatish Balay Creates the hash table, and sets the table 638a30f8f8cSSatish Balay This table is created only once. 639a30f8f8cSSatish Balay If new entried need to be added to the matrix 640a30f8f8cSSatish Balay then the hash table has to be destroyed and 641a30f8f8cSSatish Balay recreated. 642a30f8f8cSSatish Balay */ 6434a2ae208SSatish Balay #undef __FUNCT__ 6444a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 645a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 646a30f8f8cSSatish Balay { 647a30f8f8cSSatish Balay PetscFunctionBegin; 64829bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 64996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay 6524a2ae208SSatish Balay #undef __FUNCT__ 6534a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 654a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 655a30f8f8cSSatish Balay { 656a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 657a30f8f8cSSatish Balay int ierr,nstash,reallocs; 658a30f8f8cSSatish Balay InsertMode addv; 659a30f8f8cSSatish Balay 660a30f8f8cSSatish Balay PetscFunctionBegin; 661a30f8f8cSSatish Balay if (baij->donotstash) { 662a30f8f8cSSatish Balay PetscFunctionReturn(0); 663a30f8f8cSSatish Balay } 664a30f8f8cSSatish Balay 665a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 666a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 667a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 66829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 673a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 674a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 675b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 676a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 677b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 678a30f8f8cSSatish Balay PetscFunctionReturn(0); 679a30f8f8cSSatish Balay } 680a30f8f8cSSatish Balay 6814a2ae208SSatish Balay #undef __FUNCT__ 6824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 683a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 684a30f8f8cSSatish Balay { 685a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 686a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 687a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 688a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 689a30f8f8cSSatish Balay int *row,*col,other_disassembled; 690a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 691a30f8f8cSSatish Balay MatScalar *val; 692a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 6935222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES) 6945222a1afSHong Zhang PetscTruth flag; 6955222a1afSHong Zhang #endif 696a30f8f8cSSatish Balay 697a30f8f8cSSatish Balay PetscFunctionBegin; 698a30f8f8cSSatish Balay 699a30f8f8cSSatish Balay if (!baij->donotstash) { 700a30f8f8cSSatish Balay while (1) { 701a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 702a30f8f8cSSatish Balay /* 703a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 704a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 705a30f8f8cSSatish Balay */ 706a30f8f8cSSatish Balay if (!flg) break; 707a30f8f8cSSatish Balay 708a30f8f8cSSatish Balay for (i=0; i<n;) { 709a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 710a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 711a30f8f8cSSatish Balay if (j < n) ncols = j-i; 712a30f8f8cSSatish Balay else ncols = n-i; 713a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 714a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 715a30f8f8cSSatish Balay i = j; 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 719a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 720a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 721a30f8f8cSSatish Balay restore the original flags */ 722a30f8f8cSSatish Balay r1 = baij->roworiented; 723a30f8f8cSSatish Balay r2 = a->roworiented; 724a30f8f8cSSatish Balay r3 = b->roworiented; 725a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 726a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 727a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 728a30f8f8cSSatish Balay while (1) { 729a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 730a30f8f8cSSatish Balay if (!flg) break; 731a30f8f8cSSatish Balay 732a30f8f8cSSatish Balay for (i=0; i<n;) { 733a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 734a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 735a30f8f8cSSatish Balay if (j < n) ncols = j-i; 736a30f8f8cSSatish Balay else ncols = n-i; 737a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 738a30f8f8cSSatish Balay i = j; 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 742a30f8f8cSSatish Balay baij->roworiented = r1; 743a30f8f8cSSatish Balay a->roworiented = r2; 744a30f8f8cSSatish Balay b->roworiented = r3; 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 748a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 751a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 752a30f8f8cSSatish Balay /* 753a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 754a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 755a30f8f8cSSatish Balay */ 756a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 757a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 758a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 759c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 760a30f8f8cSSatish Balay } 761a30f8f8cSSatish Balay } 762a30f8f8cSSatish Balay 763a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 76440781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 767a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 768a30f8f8cSSatish Balay 769a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 770a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 771f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 772a30f8f8cSSatish Balay baij->ht_total_ct = 0; 773a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 774a30f8f8cSSatish Balay } 775a30f8f8cSSatish Balay #endif 776a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 777c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 778a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 779a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 780a30f8f8cSSatish Balay } 781a30f8f8cSSatish Balay 782a30f8f8cSSatish Balay if (baij->rowvalues) { 783a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 784a30f8f8cSSatish Balay baij->rowvalues = 0; 785a30f8f8cSSatish Balay } 7865222a1afSHong Zhang 7875222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES) 7882c535e4dSHong Zhang ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr); 7895222a1afSHong Zhang if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); } 7905222a1afSHong Zhang #endif 791a30f8f8cSSatish Balay PetscFunctionReturn(0); 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay 7944a2ae208SSatish Balay #undef __FUNCT__ 7954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 796b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 797a30f8f8cSSatish Balay { 798a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 799fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 800a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 801b0a32e0cSBarry Smith PetscViewer sviewer; 802f3ef73ceSBarry Smith PetscViewerFormat format; 803a30f8f8cSSatish Balay 804a30f8f8cSSatish Balay PetscFunctionBegin; 805b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 806fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 807a30f8f8cSSatish Balay if (isascii) { 808b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 809456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 810a30f8f8cSSatish Balay MatInfo info; 811a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 812a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 813b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 814b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 815a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 816a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 817b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 818a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 819b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 820b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 822a30f8f8cSSatish Balay PetscFunctionReturn(0); 823fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 824b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 825a30f8f8cSSatish Balay PetscFunctionReturn(0); 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay } 828a30f8f8cSSatish Balay 829a30f8f8cSSatish Balay if (isdraw) { 830b0a32e0cSBarry Smith PetscDraw draw; 831a30f8f8cSSatish Balay PetscTruth isnull; 832b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 833b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay 836a30f8f8cSSatish Balay if (size == 1) { 837e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 838a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 839a30f8f8cSSatish Balay } else { 840a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 841a30f8f8cSSatish Balay Mat A; 84265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 844b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 845a30f8f8cSSatish Balay MatScalar *a; 846a30f8f8cSSatish Balay 847a30f8f8cSSatish Balay if (!rank) { 848bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 849a30f8f8cSSatish Balay } else { 850f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 851a30f8f8cSSatish Balay } 852b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 853a30f8f8cSSatish Balay 854a30f8f8cSSatish Balay /* copy over the A part */ 85565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 856a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 85782502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 858a30f8f8cSSatish Balay 859a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 860a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 861a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 862a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 863a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 864a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 865a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 866a30f8f8cSSatish Balay col++; a += bs; 867a30f8f8cSSatish Balay } 868a30f8f8cSSatish Balay } 869a30f8f8cSSatish Balay } 870a30f8f8cSSatish Balay /* copy over the B part */ 87165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 87265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 873a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 874a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 875a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 876a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 877a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 878a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 879a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 880a30f8f8cSSatish Balay col++; a += bs; 881a30f8f8cSSatish Balay } 882a30f8f8cSSatish Balay } 883a30f8f8cSSatish Balay } 884a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 885a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 886a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 887a30f8f8cSSatish Balay /* 888a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 889b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 890a30f8f8cSSatish Balay */ 891b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 89265d70643SHong Zhang if (!rank) { 893e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 894a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 895a30f8f8cSSatish Balay } 896b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 897a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 898a30f8f8cSSatish Balay } 899a30f8f8cSSatish Balay PetscFunctionReturn(0); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 9024a2ae208SSatish Balay #undef __FUNCT__ 9034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 904b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 905a30f8f8cSSatish Balay { 906a30f8f8cSSatish Balay int ierr; 907a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 908a30f8f8cSSatish Balay 909a30f8f8cSSatish Balay PetscFunctionBegin; 910b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 911fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 912b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 913fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 914a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 915a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 916a30f8f8cSSatish Balay } else { 91729bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 918a30f8f8cSSatish Balay } 919a30f8f8cSSatish Balay PetscFunctionReturn(0); 920a30f8f8cSSatish Balay } 921a30f8f8cSSatish Balay 9224a2ae208SSatish Balay #undef __FUNCT__ 9234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 924a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 925a30f8f8cSSatish Balay { 926a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 927a30f8f8cSSatish Balay int ierr; 928a30f8f8cSSatish Balay 929a30f8f8cSSatish Balay PetscFunctionBegin; 930a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 931b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 932a30f8f8cSSatish Balay #endif 933a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 934a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 935a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 936a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 937a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 938a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 939a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 940a30f8f8cSSatish Balay #else 941a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 942a30f8f8cSSatish Balay #endif 943a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 944a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 945a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 94640781036SHong Zhang if (baij->slvec0) { 94740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 94840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 94940781036SHong Zhang } 95040781036SHong Zhang if (baij->slvec1) { 95140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 95240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 95340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 95440781036SHong Zhang } 95540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 956a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 957a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 958a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 959a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 960a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 961a30f8f8cSSatish Balay #endif 962a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 963a30f8f8cSSatish Balay PetscFunctionReturn(0); 964a30f8f8cSSatish Balay } 965a30f8f8cSSatish Balay 9664a2ae208SSatish Balay #undef __FUNCT__ 967a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 968a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 969a9d4b620SHong Zhang { 970a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 9714024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 972a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 973a9d4b620SHong Zhang 974a9d4b620SHong Zhang PetscFunctionBegin; 975a9d4b620SHong Zhang /* 976a9d4b620SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD," _1comm is called ...\n"); 977a9d4b620SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 978a9d4b620SHong Zhang */ 979a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 980a9d4b620SHong Zhang if (nt != A->n) { 981a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 982a9d4b620SHong Zhang } 983a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 984a9d4b620SHong Zhang if (nt != A->m) { 985a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 986a9d4b620SHong Zhang } 987a9d4b620SHong Zhang 988a9d4b620SHong Zhang /* diagonal part */ 989a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 990a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 991a9d4b620SHong Zhang 992a9d4b620SHong Zhang /* subdiagonal part */ 993a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 994a9d4b620SHong Zhang 995a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 996a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 997a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 998a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 999a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1000a9d4b620SHong Zhang 1001a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1002a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1003a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1004a9d4b620SHong Zhang 1005a9d4b620SHong Zhang /* supperdiagonal part */ 1006a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1007a9d4b620SHong Zhang 1008a9d4b620SHong Zhang PetscFunctionReturn(0); 1009a9d4b620SHong Zhang } 1010a9d4b620SHong Zhang 1011a9d4b620SHong Zhang #undef __FUNCT__ 101240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 101340781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1014a30f8f8cSSatish Balay { 1015a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1016a30f8f8cSSatish Balay int ierr,nt; 1017a30f8f8cSSatish Balay 1018a30f8f8cSSatish Balay PetscFunctionBegin; 1019a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1020b5df2d14SHong Zhang if (nt != A->n) { 102129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1024b5df2d14SHong Zhang if (nt != A->m) { 102529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1026a30f8f8cSSatish Balay } 102765d70643SHong Zhang 1028b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1029b941877fSHong Zhang /* do diagonal part */ 1030b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1031b941877fSHong Zhang /* do supperdiagonal part */ 1032b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1033b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1034b941877fSHong Zhang /* do subdiagonal part */ 1035b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1036b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1037b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 103865d70643SHong Zhang 1039a30f8f8cSSatish Balay PetscFunctionReturn(0); 1040a30f8f8cSSatish Balay } 1041a30f8f8cSSatish Balay 10424a2ae208SSatish Balay #undef __FUNCT__ 10434a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1044a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1045a30f8f8cSSatish Balay { 1046de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1047a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 1048a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1049a9d4b620SHong Zhang 1050a9d4b620SHong Zhang PetscFunctionBegin; 1051a9d4b620SHong Zhang /* 1052a9d4b620SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD," MatMultAdd is called ...\n"); 1053a9d4b620SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 1054a9d4b620SHong Zhang */ 1055a9d4b620SHong Zhang /* diagonal part */ 1056a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1057a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1058a9d4b620SHong Zhang 1059a9d4b620SHong Zhang /* subdiagonal part */ 1060a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1061a9d4b620SHong Zhang 1062a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 1063a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1064a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1065a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1066a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1067a9d4b620SHong Zhang 1068a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1069a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1070a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1071a9d4b620SHong Zhang 1072a9d4b620SHong Zhang /* supperdiagonal part */ 1073a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1074a9d4b620SHong Zhang 1075a9d4b620SHong Zhang PetscFunctionReturn(0); 1076a9d4b620SHong Zhang } 1077a9d4b620SHong Zhang 1078a9d4b620SHong Zhang #undef __FUNCT__ 1079a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1080a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1081a9d4b620SHong Zhang { 1082a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1083aa482183SHong Zhang int ierr; 1084a30f8f8cSSatish Balay 1085a30f8f8cSSatish Balay PetscFunctionBegin; 1086b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1087b941877fSHong Zhang /* do diagonal part */ 1088b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1089b941877fSHong Zhang /* do supperdiagonal part */ 1090b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1091de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1092de8b6608SHong Zhang 1093b941877fSHong Zhang /* do subdiagonal part */ 1094a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1095a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1096a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1097aa482183SHong Zhang 1098a30f8f8cSSatish Balay PetscFunctionReturn(0); 1099a30f8f8cSSatish Balay } 1100a30f8f8cSSatish Balay 11014a2ae208SSatish Balay #undef __FUNCT__ 11024a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1103a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1104a30f8f8cSSatish Balay { 1105a30f8f8cSSatish Balay PetscFunctionBegin; 110629bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 110796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1108a30f8f8cSSatish Balay } 1109a30f8f8cSSatish Balay 11104a2ae208SSatish Balay #undef __FUNCT__ 11114a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1112a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1113a30f8f8cSSatish Balay { 1114a30f8f8cSSatish Balay PetscFunctionBegin; 111529bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 111696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay 1119a30f8f8cSSatish Balay /* 1120a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1121a30f8f8cSSatish Balay diagonal block 1122a30f8f8cSSatish Balay */ 11234a2ae208SSatish Balay #undef __FUNCT__ 11244a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1125a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1126a30f8f8cSSatish Balay { 1127a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128a30f8f8cSSatish Balay int ierr; 1129a30f8f8cSSatish Balay 1130a30f8f8cSSatish Balay PetscFunctionBegin; 113129bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1132a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1133a30f8f8cSSatish Balay PetscFunctionReturn(0); 1134a30f8f8cSSatish Balay } 1135a30f8f8cSSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 113887828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A) 1139a30f8f8cSSatish Balay { 1140a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1141a30f8f8cSSatish Balay int ierr; 1142a30f8f8cSSatish Balay 1143a30f8f8cSSatish Balay PetscFunctionBegin; 1144a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1145a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1146a30f8f8cSSatish Balay PetscFunctionReturn(0); 1147a30f8f8cSSatish Balay } 1148a30f8f8cSSatish Balay 11494a2ae208SSatish Balay #undef __FUNCT__ 11504a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 115187828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1152a30f8f8cSSatish Balay { 1153a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 115487828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1155a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1156a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1157a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1158a30f8f8cSSatish Balay 1159a30f8f8cSSatish Balay PetscFunctionBegin; 116029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1161a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1162a30f8f8cSSatish Balay 1163a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1164a30f8f8cSSatish Balay /* 1165a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1166a30f8f8cSSatish Balay */ 1167a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1168a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1169a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1170a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1171a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1172a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1173a30f8f8cSSatish Balay } 117487828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1176a30f8f8cSSatish Balay } 1177a30f8f8cSSatish Balay 117829bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1179a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1180a30f8f8cSSatish Balay 1181a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1182a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1183a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1184a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1185a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1186a30f8f8cSSatish Balay nztot = nzA + nzB; 1187a30f8f8cSSatish Balay 1188a30f8f8cSSatish Balay cmap = mat->garray; 1189a30f8f8cSSatish Balay if (v || idx) { 1190a30f8f8cSSatish Balay if (nztot) { 1191a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1192a30f8f8cSSatish Balay int imark = -1; 1193a30f8f8cSSatish Balay if (v) { 1194a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1195a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1196a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1197a30f8f8cSSatish Balay else break; 1198a30f8f8cSSatish Balay } 1199a30f8f8cSSatish Balay imark = i; 1200a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1201a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1202a30f8f8cSSatish Balay } 1203a30f8f8cSSatish Balay if (idx) { 1204a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1205a30f8f8cSSatish Balay if (imark > -1) { 1206a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1207a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1208a30f8f8cSSatish Balay } 1209a30f8f8cSSatish Balay } else { 1210a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1211a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1212a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1213a30f8f8cSSatish Balay else break; 1214a30f8f8cSSatish Balay } 1215a30f8f8cSSatish Balay imark = i; 1216a30f8f8cSSatish Balay } 1217a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1218a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1219a30f8f8cSSatish Balay } 1220a30f8f8cSSatish Balay } else { 1221a30f8f8cSSatish Balay if (idx) *idx = 0; 1222a30f8f8cSSatish Balay if (v) *v = 0; 1223a30f8f8cSSatish Balay } 1224a30f8f8cSSatish Balay } 1225a30f8f8cSSatish Balay *nz = nztot; 1226a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1227a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1228a30f8f8cSSatish Balay PetscFunctionReturn(0); 1229a30f8f8cSSatish Balay } 1230a30f8f8cSSatish Balay 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 123387828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1234a30f8f8cSSatish Balay { 1235a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1236a30f8f8cSSatish Balay 1237a30f8f8cSSatish Balay PetscFunctionBegin; 1238a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 123929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1240a30f8f8cSSatish Balay } 1241a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1242a30f8f8cSSatish Balay PetscFunctionReturn(0); 1243a30f8f8cSSatish Balay } 1244a30f8f8cSSatish Balay 12454a2ae208SSatish Balay #undef __FUNCT__ 12464a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1247a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1248a30f8f8cSSatish Balay { 1249a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1250a30f8f8cSSatish Balay 1251a30f8f8cSSatish Balay PetscFunctionBegin; 1252a30f8f8cSSatish Balay *bs = baij->bs; 1253a30f8f8cSSatish Balay PetscFunctionReturn(0); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay 12564a2ae208SSatish Balay #undef __FUNCT__ 12574a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1258a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1259a30f8f8cSSatish Balay { 1260a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1261a30f8f8cSSatish Balay int ierr; 1262a30f8f8cSSatish Balay 1263a30f8f8cSSatish Balay PetscFunctionBegin; 1264a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1265a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1266a30f8f8cSSatish Balay PetscFunctionReturn(0); 1267a30f8f8cSSatish Balay } 1268a30f8f8cSSatish Balay 12694a2ae208SSatish Balay #undef __FUNCT__ 12704a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1271a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1272a30f8f8cSSatish Balay { 1273a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1274a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1275a30f8f8cSSatish Balay int ierr; 1276a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1277a30f8f8cSSatish Balay 1278a30f8f8cSSatish Balay PetscFunctionBegin; 1279f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1280a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1281a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1282a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1283a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1284a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1285a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1286a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1287a30f8f8cSSatish Balay info->nz_used = isend[0]; 1288a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1289a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1290a30f8f8cSSatish Balay info->memory = isend[3]; 1291a30f8f8cSSatish Balay info->mallocs = isend[4]; 1292a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1293d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1294a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1295a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1296a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1297a30f8f8cSSatish Balay info->memory = irecv[3]; 1298a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1299a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1300d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1301a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1302a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1303a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1304a30f8f8cSSatish Balay info->memory = irecv[3]; 1305a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1306a30f8f8cSSatish Balay } else { 130729bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1308a30f8f8cSSatish Balay } 1309f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1310f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1311f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1312f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1313a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1314a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1315a30f8f8cSSatish Balay info->factor_mallocs = 0; 1316a30f8f8cSSatish Balay PetscFunctionReturn(0); 1317a30f8f8cSSatish Balay } 1318a30f8f8cSSatish Balay 13194a2ae208SSatish Balay #undef __FUNCT__ 13204a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1321a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1322a30f8f8cSSatish Balay { 1323a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1324a30f8f8cSSatish Balay int ierr; 1325a30f8f8cSSatish Balay 1326a30f8f8cSSatish Balay PetscFunctionBegin; 1327e98b92d7SKris Buschelman switch (op) { 1328e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1329e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1330e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1331e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1332e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1333e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1334e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1335a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1336a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1337e98b92d7SKris Buschelman break; 1338e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1339a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1340a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1342e98b92d7SKris Buschelman break; 1343e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1344e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1345e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1346d03495bdSKris Buschelman case MAT_USE_SINGLE_PRECISION_SOLVES: 1347b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1348e98b92d7SKris Buschelman break; 1349e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1350a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1351a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1352a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1353e98b92d7SKris Buschelman break; 1354e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1355a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1356e98b92d7SKris Buschelman break; 1357e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 135829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1359e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1360a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1361e98b92d7SKris Buschelman break; 1362e98b92d7SKris Buschelman default: 136329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1364a30f8f8cSSatish Balay } 1365a30f8f8cSSatish Balay PetscFunctionReturn(0); 1366a30f8f8cSSatish Balay } 1367a30f8f8cSSatish Balay 13684a2ae208SSatish Balay #undef __FUNCT__ 13698115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 13708115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1371a30f8f8cSSatish Balay { 13728115998fSBarry Smith int ierr; 1373a30f8f8cSSatish Balay PetscFunctionBegin; 1374999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13758115998fSBarry Smith PetscFunctionReturn(0); 1376a30f8f8cSSatish Balay } 1377a30f8f8cSSatish Balay 13784a2ae208SSatish Balay #undef __FUNCT__ 13794a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1380a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1381a30f8f8cSSatish Balay { 1382a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1383a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1384a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1385a30f8f8cSSatish Balay 1386a30f8f8cSSatish Balay PetscFunctionBegin; 1387a30f8f8cSSatish Balay if (ll != rr) { 138829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1389a30f8f8cSSatish Balay } 1390a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1391a30f8f8cSSatish Balay if (rr) { 1392a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 139329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1394a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1395a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay /*} if (ll) { */ 1397a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 139829bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1399a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1400a30f8f8cSSatish Balay /* } */ 1401a30f8f8cSSatish Balay /* scale the diagonal block */ 1402a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1403a30f8f8cSSatish Balay 1404a30f8f8cSSatish Balay /* if (rr) { */ 1405a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1406a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1407a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1408a30f8f8cSSatish Balay } 1409a30f8f8cSSatish Balay 1410a30f8f8cSSatish Balay PetscFunctionReturn(0); 1411a30f8f8cSSatish Balay } 1412a30f8f8cSSatish Balay 14134a2ae208SSatish Balay #undef __FUNCT__ 14144a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 141587828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag) 1416a30f8f8cSSatish Balay { 1417a30f8f8cSSatish Balay PetscFunctionBegin; 1418*c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1419a30f8f8cSSatish Balay } 1420a30f8f8cSSatish Balay 14214a2ae208SSatish Balay #undef __FUNCT__ 14224a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1423a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1424a30f8f8cSSatish Balay { 1425a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1426a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1427a30f8f8cSSatish Balay static int called = 0; 1428a30f8f8cSSatish Balay int ierr; 1429a30f8f8cSSatish Balay 1430a30f8f8cSSatish Balay PetscFunctionBegin; 1431a30f8f8cSSatish Balay if (!a->rank) { 1432a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1433a30f8f8cSSatish Balay } 1434a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1435a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1436a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1437a30f8f8cSSatish Balay PetscFunctionReturn(0); 1438a30f8f8cSSatish Balay } 1439a30f8f8cSSatish Balay 14404a2ae208SSatish Balay #undef __FUNCT__ 14414a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1442a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1443a30f8f8cSSatish Balay { 1444f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1445a30f8f8cSSatish Balay int ierr; 1446a30f8f8cSSatish Balay 1447a30f8f8cSSatish Balay PetscFunctionBegin; 1448a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1449a30f8f8cSSatish Balay PetscFunctionReturn(0); 1450a30f8f8cSSatish Balay } 1451a30f8f8cSSatish Balay 1452a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1453a30f8f8cSSatish Balay 14544a2ae208SSatish Balay #undef __FUNCT__ 14554a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1456a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1457a30f8f8cSSatish Balay { 1458a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1459a30f8f8cSSatish Balay Mat a,b,c,d; 1460a30f8f8cSSatish Balay PetscTruth flg; 1461a30f8f8cSSatish Balay int ierr; 1462a30f8f8cSSatish Balay 1463a30f8f8cSSatish Balay PetscFunctionBegin; 1464b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1465b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1466a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1467a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1468a30f8f8cSSatish Balay 1469a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1470a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1471a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1472a30f8f8cSSatish Balay } 1473a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1474a30f8f8cSSatish Balay PetscFunctionReturn(0); 1475a30f8f8cSSatish Balay } 1476a30f8f8cSSatish Balay 14774a2ae208SSatish Balay #undef __FUNCT__ 14784a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1479273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1480273d9f13SBarry Smith { 1481273d9f13SBarry Smith int ierr; 1482273d9f13SBarry Smith 1483273d9f13SBarry Smith PetscFunctionBegin; 1484273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1485273d9f13SBarry Smith PetscFunctionReturn(0); 1486273d9f13SBarry Smith } 1487a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1488a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1489a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1490a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1491a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1492a9d4b620SHong Zhang MatMult_MPISBAIJ, 1493a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1494a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1495a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 15022798e883SHong Zhang MatRelax_MPISBAIJ, 1503a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1504a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1505a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1506a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1507a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1508a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1509a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1510a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1513a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1514a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay 0, 1519273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1520b5df2d14SHong Zhang 0, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1531a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1532a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1535a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 1538a30f8f8cSSatish Balay 0, 1539a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1547a30f8f8cSSatish Balay 0, 1548a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1549a30f8f8cSSatish Balay 0, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 15528a124369SBarry Smith MatGetPetscMaps_Petsc, 155324d5174aSHong Zhang 0, 155424d5174aSHong Zhang 0, 155524d5174aSHong Zhang 0, 155624d5174aSHong Zhang 0, 155724d5174aSHong Zhang 0, 155824d5174aSHong Zhang 0, 155924d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1560a30f8f8cSSatish Balay 1561a30f8f8cSSatish Balay 1562a30f8f8cSSatish Balay EXTERN_C_BEGIN 15634a2ae208SSatish Balay #undef __FUNCT__ 15644a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1565a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1566a30f8f8cSSatish Balay { 1567a30f8f8cSSatish Balay PetscFunctionBegin; 1568a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1569a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1570a30f8f8cSSatish Balay PetscFunctionReturn(0); 1571a30f8f8cSSatish Balay } 1572a30f8f8cSSatish Balay EXTERN_C_END 1573a30f8f8cSSatish Balay 1574273d9f13SBarry Smith EXTERN_C_BEGIN 15754a2ae208SSatish Balay #undef __FUNCT__ 15764a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1577b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1578b5df2d14SHong Zhang { 1579b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1580ca54ac64SHong Zhang int ierr; 1581b5df2d14SHong Zhang PetscTruth flg; 1582b5df2d14SHong Zhang 1583b5df2d14SHong Zhang PetscFunctionBegin; 1584b5df2d14SHong Zhang 1585b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1586b0a32e0cSBarry Smith B->data = (void*)b; 1587b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1588b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1589b5df2d14SHong Zhang 1590b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1591b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1592b5df2d14SHong Zhang B->mapping = 0; 1593b5df2d14SHong Zhang B->factor = 0; 1594b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1595b5df2d14SHong Zhang 1596b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1597b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1598b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1599b5df2d14SHong Zhang 1600b5df2d14SHong Zhang /* build local table of row and column ownerships */ 160182502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1602273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1603273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1604b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1605b5df2d14SHong Zhang 1606b5df2d14SHong Zhang /* build cache for off array entries formed */ 1607b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1608b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1609b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1610b5df2d14SHong Zhang b->garray = PETSC_NULL; 1611b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1612b5df2d14SHong Zhang 1613f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1614b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 161564a35ccbSBarry Smith b->setvalueslen = 0; 1616b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1617b5df2d14SHong Zhang #endif 1618b5df2d14SHong Zhang 1619b5df2d14SHong Zhang /* stuff used in block assembly */ 1620b5df2d14SHong Zhang b->barray = 0; 1621b5df2d14SHong Zhang 1622b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1623b5df2d14SHong Zhang b->lvec = 0; 1624b5df2d14SHong Zhang b->Mvctx = 0; 162540781036SHong Zhang b->slvec0 = 0; 162640781036SHong Zhang b->slvec0b = 0; 162740781036SHong Zhang b->slvec1 = 0; 162840781036SHong Zhang b->slvec1a = 0; 162940781036SHong Zhang b->slvec1b = 0; 163040781036SHong Zhang b->sMvctx = 0; 1631b5df2d14SHong Zhang 1632b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1633b5df2d14SHong Zhang b->rowindices = 0; 1634b5df2d14SHong Zhang b->rowvalues = 0; 1635b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1636b5df2d14SHong Zhang 1637b5df2d14SHong Zhang /* hash table stuff */ 1638b5df2d14SHong Zhang b->ht = 0; 1639b5df2d14SHong Zhang b->hd = 0; 1640b5df2d14SHong Zhang b->ht_size = 0; 1641b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1642b5df2d14SHong Zhang b->ht_fact = 0; 1643b5df2d14SHong Zhang b->ht_total_ct = 0; 1644b5df2d14SHong Zhang b->ht_insert_ct = 0; 1645b5df2d14SHong Zhang 1646e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1647b5df2d14SHong Zhang if (flg) { 1648f6275e2eSBarry Smith PetscReal fact = 1.39; 1649b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1650e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1651b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1652b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1653b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1654b5df2d14SHong Zhang } 1655b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1656b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1657b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1658b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1659b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1660b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1661b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1662b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1663b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1664b5df2d14SHong Zhang PetscFunctionReturn(0); 1665b5df2d14SHong Zhang } 1666273d9f13SBarry Smith EXTERN_C_END 1667b5df2d14SHong Zhang 16684a2ae208SSatish Balay #undef __FUNCT__ 16694a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1670b5df2d14SHong Zhang /*@C 1671b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1672b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1673b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1674b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1675b5df2d14SHong Zhang 1676b5df2d14SHong Zhang Collective on Mat 1677b5df2d14SHong Zhang 1678b5df2d14SHong Zhang Input Parameters: 1679b5df2d14SHong Zhang + A - the matrix 1680b5df2d14SHong Zhang . bs - size of blockk 1681b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1682b5df2d14SHong Zhang submatrix (same for all local rows) 1683b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 16846d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 16856d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 16866d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1687b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1688b5df2d14SHong Zhang submatrix (same for all local rows). 1689b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1690b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1691b5df2d14SHong Zhang each block row) or PETSC_NULL. 1692b5df2d14SHong Zhang 1693b5df2d14SHong Zhang 1694b5df2d14SHong Zhang Options Database Keys: 1695b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1696b5df2d14SHong Zhang block calculations (much slower) 1697b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1698b5df2d14SHong Zhang 1699b5df2d14SHong Zhang Notes: 1700b5df2d14SHong Zhang 1701b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1702b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1703b5df2d14SHong Zhang 1704b5df2d14SHong Zhang Storage Information: 1705b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1706b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1707b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1708b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1711b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1712b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1713b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1714b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1715b5df2d14SHong Zhang 1716b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1717b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1718b5df2d14SHong Zhang 1719b5df2d14SHong Zhang .vb 1720b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1721b5df2d14SHong Zhang ------------------- 1722b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1723b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1724b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1725b5df2d14SHong Zhang ------------------- 1726b5df2d14SHong Zhang .ve 1727b5df2d14SHong Zhang 1728b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1729b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17306d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17316d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1732b5df2d14SHong Zhang 17336d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17346d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1735b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1736b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1737b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1738b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1739b5df2d14SHong Zhang matrices. 1740b5df2d14SHong Zhang 1741b5df2d14SHong Zhang Level: intermediate 1742b5df2d14SHong Zhang 1743b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1744b5df2d14SHong Zhang 1745b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1746b5df2d14SHong Zhang @*/ 1747b5df2d14SHong Zhang 1748b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1749b5df2d14SHong Zhang { 1750b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1751eb7adc28SSatish Balay int ierr,i,mbs,Mbs; 1752273d9f13SBarry Smith PetscTruth flg2; 1753b5df2d14SHong Zhang 1754b5df2d14SHong Zhang PetscFunctionBegin; 1755273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr); 1756273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1757273d9f13SBarry Smith 1758e82a3eeeSBarry Smith ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1759b5df2d14SHong Zhang 1760b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1761435da068SBarry Smith if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1762435da068SBarry Smith if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1763435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1764435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1765b5df2d14SHong Zhang if (d_nnz) { 1766b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1767b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1768b5df2d14SHong Zhang } 1769b5df2d14SHong Zhang } 1770b5df2d14SHong Zhang if (o_nnz) { 1771b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1772b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1773b5df2d14SHong Zhang } 1774b5df2d14SHong Zhang } 177519138431SHong Zhang B->preallocated = PETSC_TRUE; 177619138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 177719138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 17788a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 17798a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1780b5df2d14SHong Zhang 1781b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1782b5df2d14SHong Zhang mbs = B->m/bs; 1783b5df2d14SHong Zhang Mbs = B->M/bs; 1784b5df2d14SHong Zhang if (mbs*bs != B->m) { 178519138431SHong Zhang SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1786b5df2d14SHong Zhang } 1787b5df2d14SHong Zhang 1788b5df2d14SHong Zhang b->bs = bs; 1789b5df2d14SHong Zhang b->bs2 = bs*bs; 1790b5df2d14SHong Zhang b->mbs = mbs; 1791b5df2d14SHong Zhang b->nbs = mbs; 1792b5df2d14SHong Zhang b->Mbs = Mbs; 1793b5df2d14SHong Zhang b->Nbs = Mbs; 1794b5df2d14SHong Zhang 1795b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1796b5df2d14SHong Zhang b->rowners[0] = 0; 1797b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1798b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1799b5df2d14SHong Zhang } 1800b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1801b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1802b5df2d14SHong Zhang b->cstart = b->rstart; 1803b5df2d14SHong Zhang b->cend = b->rend; 1804b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1805b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1806b5df2d14SHong Zhang } 1807b5df2d14SHong Zhang b->rstart_bs = b-> rstart*bs; 1808b5df2d14SHong Zhang b->rend_bs = b->rend*bs; 1809b5df2d14SHong Zhang 1810b5df2d14SHong Zhang b->cstart_bs = b->cstart*bs; 1811b5df2d14SHong Zhang b->cend_bs = b->cend*bs; 1812b5df2d14SHong Zhang 1813b5df2d14SHong Zhang 1814b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1815b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 1816b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1817b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 1818b5df2d14SHong Zhang 1819b5df2d14SHong Zhang /* build cache for off array entries formed */ 1820b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1821b5df2d14SHong Zhang 1822b5df2d14SHong Zhang PetscFunctionReturn(0); 1823b5df2d14SHong Zhang } 1824b5df2d14SHong Zhang 18254a2ae208SSatish Balay #undef __FUNCT__ 18264a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1827a30f8f8cSSatish Balay /*@C 1828a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1829a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1830a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1831a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1832a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1833a30f8f8cSSatish Balay 1834a30f8f8cSSatish Balay Collective on MPI_Comm 1835a30f8f8cSSatish Balay 1836a30f8f8cSSatish Balay Input Parameters: 1837a30f8f8cSSatish Balay + comm - MPI communicator 1838a30f8f8cSSatish Balay . bs - size of blockk 1839a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1840a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1841a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1842a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1843a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1844a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1845a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1846a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1847a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1848a30f8f8cSSatish Balay submatrix (same for all local rows) 1849a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 18506d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 18516d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 18526d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1853a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1854a30f8f8cSSatish Balay submatrix (same for all local rows). 1855a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1856a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1857a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1858a30f8f8cSSatish Balay 1859a30f8f8cSSatish Balay Output Parameter: 1860a30f8f8cSSatish Balay . A - the matrix 1861a30f8f8cSSatish Balay 1862a30f8f8cSSatish Balay Options Database Keys: 1863a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1864a30f8f8cSSatish Balay block calculations (much slower) 1865a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1866a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1867a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1868a30f8f8cSSatish Balay 1869a30f8f8cSSatish Balay Notes: 1870a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1871a30f8f8cSSatish Balay (possibly both). 1872a30f8f8cSSatish Balay 1873a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1874a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1875a30f8f8cSSatish Balay 1876a30f8f8cSSatish Balay Storage Information: 1877a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1878a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1879a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1880a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1881a30f8f8cSSatish Balay 1882a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1883a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1884a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1885a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1886a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1887a30f8f8cSSatish Balay 1888a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1889a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1890a30f8f8cSSatish Balay 1891a30f8f8cSSatish Balay .vb 1892a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1893a30f8f8cSSatish Balay ------------------- 1894a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1895a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1896a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1897a30f8f8cSSatish Balay ------------------- 1898a30f8f8cSSatish Balay .ve 1899a30f8f8cSSatish Balay 1900a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1901a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19026d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19036d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1904a30f8f8cSSatish Balay 19056d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19066d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1907a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1908a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1909a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1910a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1911a30f8f8cSSatish Balay matrices. 1912a30f8f8cSSatish Balay 1913a30f8f8cSSatish Balay Level: intermediate 1914a30f8f8cSSatish Balay 1915a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1916a30f8f8cSSatish Balay 1917a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1918a30f8f8cSSatish Balay @*/ 1919a30f8f8cSSatish Balay 1920a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1921a30f8f8cSSatish Balay { 1922273d9f13SBarry Smith int ierr,size; 1923a30f8f8cSSatish Balay 1924a30f8f8cSSatish Balay PetscFunctionBegin; 1925b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1926273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1927273d9f13SBarry Smith if (size > 1) { 1928b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1929b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1930273d9f13SBarry Smith } else { 1931273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1932273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1933273d9f13SBarry Smith } 1934a30f8f8cSSatish Balay PetscFunctionReturn(0); 1935a30f8f8cSSatish Balay } 1936a30f8f8cSSatish Balay 1937a30f8f8cSSatish Balay 19384a2ae208SSatish Balay #undef __FUNCT__ 19394a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 1940a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1941a30f8f8cSSatish Balay { 1942a30f8f8cSSatish Balay Mat mat; 1943a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1944a30f8f8cSSatish Balay int ierr,len=0; 1945a30f8f8cSSatish Balay 1946a30f8f8cSSatish Balay PetscFunctionBegin; 1947a30f8f8cSSatish Balay *newmat = 0; 1948b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1949b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 1950273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1951b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1952a30f8f8cSSatish Balay a->bs = oldmat->bs; 1953a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1954a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1955a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1956a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1957a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1960a30f8f8cSSatish Balay a->rend = oldmat->rend; 1961a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1962a30f8f8cSSatish Balay a->cend = oldmat->cend; 1963a30f8f8cSSatish Balay a->size = oldmat->size; 1964a30f8f8cSSatish Balay a->rank = oldmat->rank; 1965a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1966a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1967a30f8f8cSSatish Balay a->rowindices = 0; 1968a30f8f8cSSatish Balay a->rowvalues = 0; 1969a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1970a30f8f8cSSatish Balay a->barray = 0; 1971a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1972a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1973a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1974a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay /* hash table stuff */ 1977a30f8f8cSSatish Balay a->ht = 0; 1978a30f8f8cSSatish Balay a->hd = 0; 1979a30f8f8cSSatish Balay a->ht_size = 0; 1980a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1981a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1982a30f8f8cSSatish Balay a->ht_total_ct = 0; 1983a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1984a30f8f8cSSatish Balay 198582502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 1986b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1987a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1988a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1989a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1990a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1991a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1992a30f8f8cSSatish Balay if (oldmat->colmap) { 1993a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1994a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1995a30f8f8cSSatish Balay #else 199682502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 1997b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1998a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1999a30f8f8cSSatish Balay #endif 2000a30f8f8cSSatish Balay } else a->colmap = 0; 2001a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 200282502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2003b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2004a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2005a30f8f8cSSatish Balay } else a->garray = 0; 2006a30f8f8cSSatish Balay 2007a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2008b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2009a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2010a30f8f8cSSatish Balay 2011b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 2012a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2013b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2014a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2015b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2016b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2017a30f8f8cSSatish Balay *newmat = mat; 2018a30f8f8cSSatish Balay PetscFunctionReturn(0); 2019a30f8f8cSSatish Balay } 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay #include "petscsys.h" 2022a30f8f8cSSatish Balay 2023273d9f13SBarry Smith EXTERN_C_BEGIN 20244a2ae208SSatish Balay #undef __FUNCT__ 20254a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2026b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 2027a30f8f8cSSatish Balay { 2028a30f8f8cSSatish Balay Mat A; 2029a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 203087828ca2SBarry Smith PetscScalar *vals,*buf; 2031a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2032a30f8f8cSSatish Balay MPI_Status status; 2033a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2034a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2035a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2036a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2037a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2038a30f8f8cSSatish Balay 2039a30f8f8cSSatish Balay PetscFunctionBegin; 2040b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2041a30f8f8cSSatish Balay 2042a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2043a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2044a30f8f8cSSatish Balay if (!rank) { 2045b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2046a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2047552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2048a30f8f8cSSatish Balay if (header[3] < 0) { 204929bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2050a30f8f8cSSatish Balay } 2051a30f8f8cSSatish Balay } 2052a30f8f8cSSatish Balay 2053a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2054a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2055a30f8f8cSSatish Balay 205629bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2057a30f8f8cSSatish Balay 2058a30f8f8cSSatish Balay /* 2059a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2060a30f8f8cSSatish Balay divisible by the blocksize 2061a30f8f8cSSatish Balay */ 2062a30f8f8cSSatish Balay Mbs = M/bs; 2063a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2064a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2065a30f8f8cSSatish Balay else Mbs++; 2066a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2067b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2068a30f8f8cSSatish Balay } 2069a30f8f8cSSatish Balay 2070a30f8f8cSSatish Balay /* determine ownership of all rows */ 2071a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2072a30f8f8cSSatish Balay m = mbs*bs; 2073b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2074a30f8f8cSSatish Balay browners = rowners + size + 1; 2075a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2076a30f8f8cSSatish Balay rowners[0] = 0; 2077a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2078a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2079a30f8f8cSSatish Balay rstart = rowners[rank]; 2080a30f8f8cSSatish Balay rend = rowners[rank+1]; 2081a30f8f8cSSatish Balay 2082a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 208382502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2084a30f8f8cSSatish Balay if (!rank) { 2085b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2086a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2087a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 208882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2089a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2090a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2091a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2092a30f8f8cSSatish Balay } else { 2093a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2094a30f8f8cSSatish Balay } 2095a30f8f8cSSatish Balay 20960222edb1SHong Zhang if (!rank) { /* procs[0] */ 2097a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 209882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2100a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2101a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2102a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2103a30f8f8cSSatish Balay } 2104a30f8f8cSSatish Balay } 2105a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay 2107a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2108a30f8f8cSSatish Balay maxnz = 0; 2109a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2110a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2111a30f8f8cSSatish Balay } 211282502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2113a30f8f8cSSatish Balay 2114a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2115a30f8f8cSSatish Balay nz = procsnz[0]; 211682502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2117a30f8f8cSSatish Balay mycols = ibuf; 2118a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2119a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2120a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2121a30f8f8cSSatish Balay 2122a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2123a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2124a30f8f8cSSatish Balay nz = procsnz[i]; 2125a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2126a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay } 2128a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2129a30f8f8cSSatish Balay if (size != 1) { 2130a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2131a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2133a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2134a30f8f8cSSatish Balay } 2135a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21360222edb1SHong Zhang } else { /* procs[i], i>0 */ 2137a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2138a30f8f8cSSatish Balay nz = 0; 2139a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2140a30f8f8cSSatish Balay nz += locrowlens[i]; 2141a30f8f8cSSatish Balay } 214282502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2143a30f8f8cSSatish Balay mycols = ibuf; 2144a30f8f8cSSatish Balay /* receive message of column indices*/ 2145a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 214729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2148a30f8f8cSSatish Balay } 2149a30f8f8cSSatish Balay 2150a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 215182502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2152a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 215382502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2155a30f8f8cSSatish Balay masked1 = mask + Mbs; 2156a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2157a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2158a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2159a30f8f8cSSatish Balay dcount = 0; 2160a30f8f8cSSatish Balay odcount = 0; 2161a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2162a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2163a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21640222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2165a30f8f8cSSatish Balay if (!mask[tmp]) { 2166a30f8f8cSSatish Balay mask[tmp] = 1; 21670222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21680222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2169a30f8f8cSSatish Balay } 2170a30f8f8cSSatish Balay } 2171a30f8f8cSSatish Balay rowcount++; 2172a30f8f8cSSatish Balay } 2173a30f8f8cSSatish Balay 21740222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21750222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2176a30f8f8cSSatish Balay 2177a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2178a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2179a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2180a30f8f8cSSatish Balay } 2181a30f8f8cSSatish Balay 2182a30f8f8cSSatish Balay /* create our matrix */ 21837e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2184bfe19f1aSHong Zhang CHKERRQ(ierr); 2185a30f8f8cSSatish Balay A = *newmat; 2186273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay 2188a30f8f8cSSatish Balay if (!rank) { 218987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2191a30f8f8cSSatish Balay nz = procsnz[0]; 2192a30f8f8cSSatish Balay vals = buf; 2193a30f8f8cSSatish Balay mycols = ibuf; 2194a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2195a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2197a30f8f8cSSatish Balay 2198a30f8f8cSSatish Balay /* insert into matrix */ 2199a30f8f8cSSatish Balay jj = rstart*bs; 2200a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22017e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay mycols += locrowlens[i]; 2203a30f8f8cSSatish Balay vals += locrowlens[i]; 2204a30f8f8cSSatish Balay jj++; 2205a30f8f8cSSatish Balay } 22067e06b45fSHong Zhang 2207a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2208a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2209a30f8f8cSSatish Balay nz = procsnz[i]; 2210a30f8f8cSSatish Balay vals = buf; 2211a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay } 2214a30f8f8cSSatish Balay /* the last proc */ 2215a30f8f8cSSatish Balay if (size != 1){ 2216a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2217a30f8f8cSSatish Balay vals = buf; 2218a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2220a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay } 2222a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22237e06b45fSHong Zhang 2224a30f8f8cSSatish Balay } else { 2225a30f8f8cSSatish Balay /* receive numeric values */ 222687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay 2228a30f8f8cSSatish Balay /* receive message of values*/ 2229a30f8f8cSSatish Balay vals = buf; 2230a30f8f8cSSatish Balay mycols = ibuf; 2231a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2232a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 223329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2234a30f8f8cSSatish Balay 2235a30f8f8cSSatish Balay /* insert into matrix */ 2236a30f8f8cSSatish Balay jj = rstart*bs; 2237a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2238a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2239a30f8f8cSSatish Balay mycols += locrowlens[i]; 2240a30f8f8cSSatish Balay vals += locrowlens[i]; 2241a30f8f8cSSatish Balay jj++; 2242a30f8f8cSSatish Balay } 2243a30f8f8cSSatish Balay } 22447e06b45fSHong Zhang 2245a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2246a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2247a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2250a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2253a30f8f8cSSatish Balay PetscFunctionReturn(0); 2254a30f8f8cSSatish Balay } 2255273d9f13SBarry Smith EXTERN_C_END 2256a30f8f8cSSatish Balay 22574a2ae208SSatish Balay #undef __FUNCT__ 22584a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2259a30f8f8cSSatish Balay /*@ 2260a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2261a30f8f8cSSatish Balay 2262a30f8f8cSSatish Balay Input Parameters: 2263a30f8f8cSSatish Balay . mat - the matrix 2264a30f8f8cSSatish Balay . fact - factor 2265a30f8f8cSSatish Balay 2266a30f8f8cSSatish Balay Collective on Mat 2267a30f8f8cSSatish Balay 2268a30f8f8cSSatish Balay Level: advanced 2269a30f8f8cSSatish Balay 2270a30f8f8cSSatish Balay Notes: 2271a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2272a30f8f8cSSatish Balay 2273a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2274a30f8f8cSSatish Balay 2275a30f8f8cSSatish Balay .seealso: MatSetOption() 2276a30f8f8cSSatish Balay @*/ 2277a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2278a30f8f8cSSatish Balay { 2279a30f8f8cSSatish Balay PetscFunctionBegin; 228029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 228196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2282a30f8f8cSSatish Balay } 228324d5174aSHong Zhang 22844a2ae208SSatish Balay #undef __FUNCT__ 22854a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 228624d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 228724d5174aSHong Zhang { 228824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2289f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2290ca54ac64SHong Zhang PetscReal atmp; 229187828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2292ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2293154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 229487828ca2SBarry Smith PetscScalar *va; 22958a1c53f2SBarry Smith MatScalar *ba; 2296f4c0e9e4SHong Zhang MPI_Status stat; 229724d5174aSHong Zhang 229824d5174aSHong Zhang PetscFunctionBegin; 2299d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2300f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2301f4c0e9e4SHong Zhang 2302ac355199SBarry Smith ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 2303ac355199SBarry Smith ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 2304f4c0e9e4SHong Zhang 2305f4c0e9e4SHong Zhang bs = a->bs; 2306f4c0e9e4SHong Zhang mbs = a->mbs; 2307f4c0e9e4SHong Zhang Mbs = a->Mbs; 2308f4c0e9e4SHong Zhang ba = b->a; 2309f4c0e9e4SHong Zhang bi = b->i; 2310f4c0e9e4SHong Zhang bj = b->j; 2311ca54ac64SHong Zhang /* 2312f4c0e9e4SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 2313f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2314ca54ac64SHong Zhang */ 2315f4c0e9e4SHong Zhang 2316f4c0e9e4SHong Zhang /* find ownerships */ 2317f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2318f4c0e9e4SHong Zhang /* 231904d41228SHong Zhang if (!rank){ 232004d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2321f4c0e9e4SHong Zhang } 2322f4c0e9e4SHong Zhang */ 2323f4c0e9e4SHong Zhang 2324f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 232582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2326ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2327f4c0e9e4SHong Zhang 2328f4c0e9e4SHong Zhang /* row_max for B */ 2329b8475685SHong Zhang if (rank != size-1){ 2330f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2331f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2332f4c0e9e4SHong Zhang brow = bs*i; 2333f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2334f4c0e9e4SHong Zhang bcol = bs*(*bj); 2335f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2336ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 233704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2338ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2339f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2340f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2341ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2342f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2343ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2344f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2345f4c0e9e4SHong Zhang } 2346f4c0e9e4SHong Zhang } 2347f4c0e9e4SHong Zhang bj++; 2348f4c0e9e4SHong Zhang } 2349f4c0e9e4SHong Zhang } 235004d41228SHong Zhang /* 235104d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 235204d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 235304d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 235404d41228SHong Zhang */ 2355f4c0e9e4SHong Zhang 2356f4c0e9e4SHong Zhang /* send values to its owners */ 2357f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2358f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2359ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2360d7d1e502SBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr); 2361ca54ac64SHong Zhang /* 236204d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 2363f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2364ca54ac64SHong Zhang */ 2365ca54ac64SHong Zhang } 2366f4c0e9e4SHong Zhang } 2367f4c0e9e4SHong Zhang 2368f4c0e9e4SHong Zhang /* receive values */ 2369ca54ac64SHong Zhang if (rank){ 2370f4c0e9e4SHong Zhang rvalues = work; 2371ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2372f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 2373d7d1e502SBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr); 2374f4c0e9e4SHong Zhang /* process values */ 2375f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2376ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2377f4c0e9e4SHong Zhang } 2378ca54ac64SHong Zhang /* 237904d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 2380f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2381ca54ac64SHong Zhang */ 2382f4c0e9e4SHong Zhang } 2383ca54ac64SHong Zhang } 2384f4c0e9e4SHong Zhang 2385f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2386ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 238724d5174aSHong Zhang PetscFunctionReturn(0); 238824d5174aSHong Zhang } 23892798e883SHong Zhang 23902798e883SHong Zhang #undef __FUNCT__ 23912798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2392c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 23932798e883SHong Zhang { 23942798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2395ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2396ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2397ffe4fb16SHong Zhang Vec bb1; 2398ffe4fb16SHong Zhang 2399ffe4fb16SHong Zhang PetscFunctionBegin; 2400ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2401ffe4fb16SHong Zhang if (bs > 1) 2402ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2403ffe4fb16SHong Zhang 2404ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2405ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2406ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2407ffe4fb16SHong Zhang its--; 2408ffe4fb16SHong Zhang } 2409ffe4fb16SHong Zhang 2410ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2411ffe4fb16SHong Zhang while (its--){ 2412ffe4fb16SHong Zhang 2413ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2414ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2415ffe4fb16SHong Zhang 2416ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2417ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2418ffe4fb16SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2419ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2420ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2421ffe4fb16SHong Zhang 2422ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2423ffe4fb16SHong Zhang 2424ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2425ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2426ffe4fb16SHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2427ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2428ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2429ffe4fb16SHong Zhang 2430ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2431ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2432ffe4fb16SHong Zhang 2433ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2434ffe4fb16SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2435ffe4fb16SHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2436ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2437ffe4fb16SHong Zhang 2438ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2439ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2440ffe4fb16SHong Zhang 2441ffe4fb16SHong Zhang /* local diagonal sweep */ 2442ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2443ffe4fb16SHong Zhang } 2444ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2445ffe4fb16SHong Zhang } else { 2446ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2447ffe4fb16SHong Zhang } 2448ffe4fb16SHong Zhang PetscFunctionReturn(0); 2449ffe4fb16SHong Zhang } 2450ffe4fb16SHong Zhang 2451ffe4fb16SHong Zhang #undef __FUNCT__ 2452ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2453ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2454ffe4fb16SHong Zhang { 2455ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 24562798e883SHong Zhang int ierr; 2457d05c616dSSatish Balay PetscScalar mone=-1.0; 24582798e883SHong Zhang Vec lvec1,bb1; 24592798e883SHong Zhang 24602798e883SHong Zhang PetscFunctionBegin; 246191723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 24622798e883SHong Zhang if (mat->bs > 1) 24632798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24642798e883SHong Zhang 2465c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24662798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2467bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 24682798e883SHong Zhang its--; 24692798e883SHong Zhang } 24702798e883SHong Zhang 24712798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24722798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24732798e883SHong Zhang while (its--){ 24742798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24752798e883SHong Zhang 24762798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 24772798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 24782798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 24792798e883SHong Zhang 24802798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24812798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 24822798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24832798e883SHong Zhang 24842798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 24852798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 24862798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 24872798e883SHong Zhang 24882798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24892798e883SHong Zhang 2490c14dc6b6SHong Zhang /* diagonal sweep */ 2491bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 24922798e883SHong Zhang } 24932798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 24942798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2495c14dc6b6SHong Zhang } else { 2496c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2497c14dc6b6SHong Zhang } 24982798e883SHong Zhang PetscFunctionReturn(0); 24992798e883SHong Zhang } 25002798e883SHong Zhang 2501