xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision c149003486404f7276cf7be522b1ffb930f108a8)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
51dfbe8321SBarry Smith   PetscErrorCode ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
66dfbe8321SBarry Smith   PetscErrorCode ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay 
76a30f8f8cSSatish Balay #define CHUNKSIZE  10
77a30f8f8cSSatish Balay 
78a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
79a30f8f8cSSatish Balay { \
80a30f8f8cSSatish Balay  \
81a30f8f8cSSatish Balay     brow = row/bs;  \
82a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
83a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
84a30f8f8cSSatish Balay       bcol = col/bs; \
85a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
86a30f8f8cSSatish Balay       low = 0; high = nrow; \
87a30f8f8cSSatish Balay       while (high-low > 3) { \
88a30f8f8cSSatish Balay         t = (low+high)/2; \
89a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
90a30f8f8cSSatish Balay         else              low  = t; \
91a30f8f8cSSatish Balay       } \
92a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
93a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
94a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
95a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
96a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
97a30f8f8cSSatish Balay           else                    *bap  = value;  \
98a30f8f8cSSatish Balay           goto a_noinsert; \
99a30f8f8cSSatish Balay         } \
100a30f8f8cSSatish Balay       } \
101a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
102085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
103ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \
104a30f8f8cSSatish Balay       N = nrow++ - 1;  \
105a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
106a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
107a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
108a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
109a30f8f8cSSatish Balay       } \
110a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
111a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
112a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
113a30f8f8cSSatish Balay       a_noinsert:; \
114a30f8f8cSSatish Balay     ailen[brow] = nrow; \
115a30f8f8cSSatish Balay }
116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
117a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
118a30f8f8cSSatish Balay { \
119a30f8f8cSSatish Balay     brow = row/bs;  \
120a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
121a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
122a30f8f8cSSatish Balay       bcol = col/bs; \
123a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
124a30f8f8cSSatish Balay       low = 0; high = nrow; \
125a30f8f8cSSatish Balay       while (high-low > 3) { \
126a30f8f8cSSatish Balay         t = (low+high)/2; \
127a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
128a30f8f8cSSatish Balay         else              low  = t; \
129a30f8f8cSSatish Balay       } \
130a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
131a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
132a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
133a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
134a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
135a30f8f8cSSatish Balay           else                    *bap  = value;  \
136a30f8f8cSSatish Balay           goto b_noinsert; \
137a30f8f8cSSatish Balay         } \
138a30f8f8cSSatish Balay       } \
139a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
140085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
141ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \
142a30f8f8cSSatish Balay       N = nrow++ - 1;  \
143a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
144a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
145a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
146a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
149a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
150a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
151a30f8f8cSSatish Balay       b_noinsert:; \
152a30f8f8cSSatish Balay     bilen[brow] = nrow; \
153a30f8f8cSSatish Balay }
154a30f8f8cSSatish Balay #endif
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1574a2ae208SSatish Balay #undef __FUNCT__
1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
160a30f8f8cSSatish Balay {
161a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
162dfbe8321SBarry Smith   PetscErrorCode ierr;
1631302d50aSBarry Smith   PetscInt       i,N = m*n;
164a30f8f8cSSatish Balay   MatScalar      *vsingle;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
168a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
16982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
170a30f8f8cSSatish Balay     b->setvalueslen  = N;
171a30f8f8cSSatish Balay   }
172a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
173a30f8f8cSSatish Balay 
174a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
175a30f8f8cSSatish Balay     vsingle[i] = v[i];
176a30f8f8cSSatish Balay   }
177a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
178a30f8f8cSSatish Balay   PetscFunctionReturn(0);
179a30f8f8cSSatish Balay }
180a30f8f8cSSatish Balay 
1814a2ae208SSatish Balay #undef __FUNCT__
1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
184a30f8f8cSSatish Balay {
185a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
186dfbe8321SBarry Smith   PetscErrorCode ierr;
1871302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
188a30f8f8cSSatish Balay   MatScalar      *vsingle;
189a30f8f8cSSatish Balay 
190a30f8f8cSSatish Balay   PetscFunctionBegin;
191a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
192a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
19382502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
194a30f8f8cSSatish Balay     b->setvalueslen  = N;
195a30f8f8cSSatish Balay   }
196a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
197a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
198a30f8f8cSSatish Balay     vsingle[i] = v[i];
199a30f8f8cSSatish Balay   }
200a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
201a30f8f8cSSatish Balay   PetscFunctionReturn(0);
202a30f8f8cSSatish Balay }
203a30f8f8cSSatish Balay #endif
204a30f8f8cSSatish Balay 
205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
206a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
207a30f8f8cSSatish Balay */
2084a2ae208SSatish Balay #undef __FUNCT__
209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
211a30f8f8cSSatish Balay {
212a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
213a30f8f8cSSatish Balay   MatScalar      value;
214b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
215dfbe8321SBarry Smith   PetscErrorCode ierr;
2161302d50aSBarry Smith   PetscInt       i,j,row,col;
2171302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
2181302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
219521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
220a30f8f8cSSatish Balay 
221a30f8f8cSSatish Balay   /* Some Variables required in the macro */
222a30f8f8cSSatish Balay   Mat            A = baij->A;
223a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2241302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
225a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
226a30f8f8cSSatish Balay 
227a30f8f8cSSatish Balay   Mat            B = baij->B;
228a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2291302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
230a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
231a30f8f8cSSatish Balay 
2321302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2331302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
234a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
235a30f8f8cSSatish Balay 
236a30f8f8cSSatish Balay   /* for stash */
2371302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
238f65c83cfSHong Zhang   MatScalar     *v_loc=0;
239a30f8f8cSSatish Balay 
240a30f8f8cSSatish Balay   PetscFunctionBegin;
241a30f8f8cSSatish Balay 
242a30f8f8cSSatish Balay   if(!baij->donotstash){
2431302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
24482502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
245a30f8f8cSSatish Balay   }
246a30f8f8cSSatish Balay 
247a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
248a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
25077431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
251a30f8f8cSSatish Balay #endif
252a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
253a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
254a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
255f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
256a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
257a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
258a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
259a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
260a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
261a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
262a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
263a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
26577431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
266a30f8f8cSSatish Balay #endif
267a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
268a30f8f8cSSatish Balay           if (mat->was_assembled) {
269a30f8f8cSSatish Balay             if (!baij->colmap) {
270653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
271a30f8f8cSSatish Balay             }
272a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
273a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
27471730473SSatish Balay             col  = col - 1;
275a30f8f8cSSatish Balay #else
27671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
277a30f8f8cSSatish Balay #endif
278a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
279a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
280a30f8f8cSSatish Balay               col =  in[j];
281a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
282a30f8f8cSSatish Balay               B = baij->B;
283a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
284a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
285a30f8f8cSSatish Balay               ba=b->a;
28671730473SSatish Balay             } else col += in[j]%bs;
287a30f8f8cSSatish Balay           } else col = in[j];
288a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
289a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
290a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
291a30f8f8cSSatish Balay         }
292a30f8f8cSSatish Balay       }
293a30f8f8cSSatish Balay     } else {  /* off processor entry */
294a30f8f8cSSatish Balay       if (!baij->donotstash) {
295a30f8f8cSSatish Balay         n_loc = 0;
296a30f8f8cSSatish Balay         for (j=0; j<n; j++){
297f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
298a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
299a30f8f8cSSatish Balay           if (roworiented) {
300a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
301a30f8f8cSSatish Balay           } else {
302a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
303a30f8f8cSSatish Balay           }
304a30f8f8cSSatish Balay           n_loc++;
305a30f8f8cSSatish Balay         }
306a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
307a30f8f8cSSatish Balay       }
308a30f8f8cSSatish Balay     }
309a30f8f8cSSatish Balay   }
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   if(!baij->donotstash){
312a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
313a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
314a30f8f8cSSatish Balay   }
315a30f8f8cSSatish Balay   PetscFunctionReturn(0);
316a30f8f8cSSatish Balay }
317a30f8f8cSSatish Balay 
3184a2ae208SSatish Balay #undef __FUNCT__
319e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3201302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
321a30f8f8cSSatish Balay {
3220880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
323f15d580aSBarry Smith   const MatScalar *value;
324f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3250880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
326dfbe8321SBarry Smith   PetscErrorCode  ierr;
3271302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
3281302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
329521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
3300880e062SHong Zhang 
331a30f8f8cSSatish Balay   PetscFunctionBegin;
3320880e062SHong Zhang   if(!barray) {
3330880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3340880e062SHong Zhang     baij->barray = barray;
3350880e062SHong Zhang   }
3360880e062SHong Zhang 
3370880e062SHong Zhang   if (roworiented) {
3380880e062SHong Zhang     stepval = (n-1)*bs;
3390880e062SHong Zhang   } else {
3400880e062SHong Zhang     stepval = (m-1)*bs;
3410880e062SHong Zhang   }
3420880e062SHong Zhang   for (i=0; i<m; i++) {
3430880e062SHong Zhang     if (im[i] < 0) continue;
3442515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
34577431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3460880e062SHong Zhang #endif
3470880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3480880e062SHong Zhang       row = im[i] - rstart;
3490880e062SHong Zhang       for (j=0; j<n; j++) {
3500880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3510880e062SHong Zhang         if ((roworiented) && (n == 1)) {
352f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3530880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
354f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3550880e062SHong Zhang         } else { /* Here a copy is required */
3560880e062SHong Zhang           if (roworiented) {
3570880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3580880e062SHong Zhang           } else {
3590880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3600880e062SHong Zhang           }
3610880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3620880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3630880e062SHong Zhang               *barray++  = *value++;
3640880e062SHong Zhang             }
3650880e062SHong Zhang           }
3660880e062SHong Zhang           barray -=bs2;
3670880e062SHong Zhang         }
3680880e062SHong Zhang 
3690880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3700880e062SHong Zhang           col  = in[j] - cstart;
3710880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3720880e062SHong Zhang         }
3730880e062SHong Zhang         else if (in[j] < 0) continue;
3742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
37577431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3760880e062SHong Zhang #endif
3770880e062SHong Zhang         else {
3780880e062SHong Zhang           if (mat->was_assembled) {
3790880e062SHong Zhang             if (!baij->colmap) {
380653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3810880e062SHong Zhang             }
3820880e062SHong Zhang 
3832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3840880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3851302d50aSBarry Smith             { PetscInt data;
3860880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3870880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3880880e062SHong Zhang             }
3890880e062SHong Zhang #else
3900880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3910880e062SHong Zhang #endif
3920880e062SHong Zhang #endif
3930880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3940880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3950880e062SHong Zhang             col  = (col - 1)/bs;
3960880e062SHong Zhang #else
3970880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3980880e062SHong Zhang #endif
3990880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4000880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4010880e062SHong Zhang               col =  in[j];
4020880e062SHong Zhang             }
4030880e062SHong Zhang           }
4040880e062SHong Zhang           else col = in[j];
405e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4060880e062SHong Zhang         }
4070880e062SHong Zhang       }
4080880e062SHong Zhang     } else {
4090880e062SHong Zhang       if (!baij->donotstash) {
4100880e062SHong Zhang         if (roworiented) {
4110880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4120880e062SHong Zhang         } else {
4130880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4140880e062SHong Zhang         }
4150880e062SHong Zhang       }
4160880e062SHong Zhang     }
4170880e062SHong Zhang   }
4180880e062SHong Zhang   PetscFunctionReturn(0);
419a30f8f8cSSatish Balay }
420a30f8f8cSSatish Balay 
4214a2ae208SSatish Balay #undef __FUNCT__
4224a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
424a30f8f8cSSatish Balay {
425f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4266849ba73SBarry Smith   PetscErrorCode ierr;
427521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
4281302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
429a30f8f8cSSatish Balay 
430a30f8f8cSSatish Balay   PetscFunctionBegin;
431a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43277431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
43377431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
434a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
435a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
436a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
43777431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
43877431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
439a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
440a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
441c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
442a30f8f8cSSatish Balay         } else {
443a30f8f8cSSatish Balay           if (!baij->colmap) {
444653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
445a30f8f8cSSatish Balay           }
446a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
447a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
448a30f8f8cSSatish Balay           data --;
449a30f8f8cSSatish Balay #else
450a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
451a30f8f8cSSatish Balay #endif
452a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
453a30f8f8cSSatish Balay           else {
454a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
455e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
456a30f8f8cSSatish Balay           }
457a30f8f8cSSatish Balay         }
458a30f8f8cSSatish Balay       }
459a30f8f8cSSatish Balay     } else {
46029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
461a30f8f8cSSatish Balay     }
462a30f8f8cSSatish Balay   }
463a30f8f8cSSatish Balay  PetscFunctionReturn(0);
464a30f8f8cSSatish Balay }
465a30f8f8cSSatish Balay 
4664a2ae208SSatish Balay #undef __FUNCT__
4674a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
468dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
469a30f8f8cSSatish Balay {
470a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
471dfbe8321SBarry Smith   PetscErrorCode ierr;
472a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
473a30f8f8cSSatish Balay 
474a30f8f8cSSatish Balay   PetscFunctionBegin;
475a30f8f8cSSatish Balay   if (baij->size == 1) {
476a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
477a30f8f8cSSatish Balay   } else {
478a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
479f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
480a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
481a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
482a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
483a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
484d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
485a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
486a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4870b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4880b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4890b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4900b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
4910b8dc8d2SHong Zhang       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstart,nz;
4920b8dc8d2SHong Zhang       PetscInt     brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs;
4930b8dc8d2SHong Zhang       MatScalar    *v;
4940b8dc8d2SHong Zhang 
4950b8dc8d2SHong Zhang       ierr  = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
4960b8dc8d2SHong Zhang       rsum2 = rsum + mat->N;
4970b8dc8d2SHong Zhang       ierr  = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
4980b8dc8d2SHong Zhang       /* Amat */
4990b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5000b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5010b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5020b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5030b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5040b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5050b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5060b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5070b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5080b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5090b8dc8d2SHong Zhang               /* non-diagonal block */
5100b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5110b8dc8d2SHong Zhang             }
5120b8dc8d2SHong Zhang           }
5130b8dc8d2SHong Zhang         }
5140b8dc8d2SHong Zhang       }
5150b8dc8d2SHong Zhang       /* Bmat */
5160b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5170b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5180b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5190b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5200b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5210b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5220b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5230b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5240b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5250b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5260b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5270b8dc8d2SHong Zhang             }
5280b8dc8d2SHong Zhang           }
5290b8dc8d2SHong Zhang         }
5300b8dc8d2SHong Zhang       }
5310b8dc8d2SHong Zhang       ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5320b8dc8d2SHong Zhang       *norm = 0.0;
5330b8dc8d2SHong Zhang       for (col=0; col<mat->N; col++) {
5340b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5350b8dc8d2SHong Zhang       }
5360b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
537a30f8f8cSSatish Balay     } else {
53829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
539a30f8f8cSSatish Balay     }
540a30f8f8cSSatish Balay   }
541a30f8f8cSSatish Balay   PetscFunctionReturn(0);
542a30f8f8cSSatish Balay }
543a30f8f8cSSatish Balay 
5444a2ae208SSatish Balay #undef __FUNCT__
5454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
546dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
547a30f8f8cSSatish Balay {
548a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
549dfbe8321SBarry Smith   PetscErrorCode ierr;
5501302d50aSBarry Smith   PetscInt       nstash,reallocs;
551a30f8f8cSSatish Balay   InsertMode     addv;
552a30f8f8cSSatish Balay 
553a30f8f8cSSatish Balay   PetscFunctionBegin;
554a30f8f8cSSatish Balay   if (baij->donotstash) {
555a30f8f8cSSatish Balay     PetscFunctionReturn(0);
556a30f8f8cSSatish Balay   }
557a30f8f8cSSatish Balay 
558a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
559a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
560a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
562a30f8f8cSSatish Balay   }
563a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
566a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
56863ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
569a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
57063ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
571a30f8f8cSSatish Balay   PetscFunctionReturn(0);
572a30f8f8cSSatish Balay }
573a30f8f8cSSatish Balay 
5744a2ae208SSatish Balay #undef __FUNCT__
5754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
576dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
577a30f8f8cSSatish Balay {
578a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
579a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
580a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
5816849ba73SBarry Smith   PetscErrorCode ierr;
58213f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5831302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
58413f74950SBarry Smith   PetscMPIInt    n;
585a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
586a30f8f8cSSatish Balay   MatScalar      *val;
587a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   PetscFunctionBegin;
590a30f8f8cSSatish Balay 
591a30f8f8cSSatish Balay   if (!baij->donotstash) {
592a30f8f8cSSatish Balay     while (1) {
593a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
594a30f8f8cSSatish Balay       if (!flg) break;
595a30f8f8cSSatish Balay 
596a30f8f8cSSatish Balay       for (i=0; i<n;) {
597a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
598a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
599a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
600a30f8f8cSSatish Balay         else       ncols = n-i;
601a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
602a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
603a30f8f8cSSatish Balay         i = j;
604a30f8f8cSSatish Balay       }
605a30f8f8cSSatish Balay     }
606a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
607a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
608a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
609a30f8f8cSSatish Balay        restore the original flags */
610a30f8f8cSSatish Balay     r1 = baij->roworiented;
611a30f8f8cSSatish Balay     r2 = a->roworiented;
612a30f8f8cSSatish Balay     r3 = b->roworiented;
613a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
614a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
615a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
616a30f8f8cSSatish Balay     while (1) {
617a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
618a30f8f8cSSatish Balay       if (!flg) break;
619a30f8f8cSSatish Balay 
620a30f8f8cSSatish Balay       for (i=0; i<n;) {
621a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
622a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
623a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
624a30f8f8cSSatish Balay         else       ncols = n-i;
625a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
626a30f8f8cSSatish Balay         i = j;
627a30f8f8cSSatish Balay       }
628a30f8f8cSSatish Balay     }
629a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
630a30f8f8cSSatish Balay     baij->roworiented = r1;
631a30f8f8cSSatish Balay     a->roworiented    = r2;
632a30f8f8cSSatish Balay     b->roworiented    = r3;
633a30f8f8cSSatish Balay   }
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
636a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
637a30f8f8cSSatish Balay 
638a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
639a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
640a30f8f8cSSatish Balay   /*
641a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
642a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
643a30f8f8cSSatish Balay   */
644a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
645a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
646a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
647c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
648a30f8f8cSSatish Balay     }
649a30f8f8cSSatish Balay   }
650a30f8f8cSSatish Balay 
651a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
653a30f8f8cSSatish Balay   }
6544eb6d288SHong Zhang   b->compressedrow.use = PETSC_TRUE;
655a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
656a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (baij->rowvalues) {
659a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
660a30f8f8cSSatish Balay     baij->rowvalues = 0;
661a30f8f8cSSatish Balay   }
6625222a1afSHong Zhang 
663a30f8f8cSSatish Balay   PetscFunctionReturn(0);
664a30f8f8cSSatish Balay }
665a30f8f8cSSatish Balay 
6664a2ae208SSatish Balay #undef __FUNCT__
6674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6686849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
669a30f8f8cSSatish Balay {
670a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
671dfbe8321SBarry Smith   PetscErrorCode    ierr;
672521d7252SBarry Smith   PetscInt          bs = mat->bs;
6731302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
67432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
675b0a32e0cSBarry Smith   PetscViewer       sviewer;
676f3ef73ceSBarry Smith   PetscViewerFormat format;
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay   PetscFunctionBegin;
67932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
680fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68132077d6dSBarry Smith   if (iascii) {
682b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
683456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
684a30f8f8cSSatish Balay       MatInfo info;
685a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
686a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
68777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
68877431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
689521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
690a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
694b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
695a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       PetscFunctionReturn(0);
697fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
69877431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
699a30f8f8cSSatish Balay       PetscFunctionReturn(0);
700*c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
701*c1490034SHong Zhang       PetscFunctionReturn(0);
702a30f8f8cSSatish Balay     }
703a30f8f8cSSatish Balay   }
704a30f8f8cSSatish Balay 
705a30f8f8cSSatish Balay   if (isdraw) {
706b0a32e0cSBarry Smith     PetscDraw       draw;
707a30f8f8cSSatish Balay     PetscTruth isnull;
708b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
709b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
710a30f8f8cSSatish Balay   }
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay   if (size == 1) {
713e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
714a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay   } else {
716a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
717a30f8f8cSSatish Balay     Mat         A;
71865d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
71965d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
7201302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
721a30f8f8cSSatish Balay     MatScalar   *a;
722a30f8f8cSSatish Balay 
723f204ca49SKris Buschelman     /* Should this be the same type as mat? */
724f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
725a30f8f8cSSatish Balay     if (!rank) {
726f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
727a30f8f8cSSatish Balay     } else {
728f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
729a30f8f8cSSatish Balay     }
730f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
731521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
733a30f8f8cSSatish Balay 
734a30f8f8cSSatish Balay     /* copy over the A part */
73565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
736a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7371302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
738a30f8f8cSSatish Balay 
739a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
740a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
741a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
742a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
743a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
744a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
745a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
746a30f8f8cSSatish Balay           col++; a += bs;
747a30f8f8cSSatish Balay         }
748a30f8f8cSSatish Balay       }
749a30f8f8cSSatish Balay     }
750a30f8f8cSSatish Balay     /* copy over the B part */
75165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
753a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
754a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
755a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
756a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
757a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
758a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
759a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
760a30f8f8cSSatish Balay           col++; a += bs;
761a30f8f8cSSatish Balay         }
762a30f8f8cSSatish Balay       }
763a30f8f8cSSatish Balay     }
764a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
765a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
766a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
767a30f8f8cSSatish Balay     /*
768a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
769b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
770a30f8f8cSSatish Balay     */
771b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
77265d70643SHong Zhang     if (!rank) {
773e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
774a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
775a30f8f8cSSatish Balay     }
776b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
777a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
778a30f8f8cSSatish Balay   }
779a30f8f8cSSatish Balay   PetscFunctionReturn(0);
780a30f8f8cSSatish Balay }
781a30f8f8cSSatish Balay 
7824a2ae208SSatish Balay #undef __FUNCT__
7834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
784dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
785a30f8f8cSSatish Balay {
786dfbe8321SBarry Smith   PetscErrorCode ierr;
78732077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
788a30f8f8cSSatish Balay 
789a30f8f8cSSatish Balay   PetscFunctionBegin;
79032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
791fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
792b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
793fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
79432077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
795a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
796a30f8f8cSSatish Balay   } else {
7971302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
798a30f8f8cSSatish Balay   }
799a30f8f8cSSatish Balay   PetscFunctionReturn(0);
800a30f8f8cSSatish Balay }
801a30f8f8cSSatish Balay 
8024a2ae208SSatish Balay #undef __FUNCT__
8034a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
804dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
805a30f8f8cSSatish Balay {
806a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
807dfbe8321SBarry Smith   PetscErrorCode ierr;
808a30f8f8cSSatish Balay 
809a30f8f8cSSatish Balay   PetscFunctionBegin;
810a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
81177431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
812a30f8f8cSSatish Balay #endif
813a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
814a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
815a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
816a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
817a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
818a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
819a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
820a30f8f8cSSatish Balay #else
821a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
822a30f8f8cSSatish Balay #endif
823a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
824a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
825a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
82640781036SHong Zhang   if (baij->slvec0) {
82740781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
82840781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
82940781036SHong Zhang   }
83040781036SHong Zhang   if (baij->slvec1) {
83140781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83240781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83340781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
83440781036SHong Zhang   }
83540781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
836a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
837a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
838a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
839a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
840a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
841a30f8f8cSSatish Balay #endif
842a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
843901853e0SKris Buschelman 
844901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
845901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
846901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
847901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
848a30f8f8cSSatish Balay   PetscFunctionReturn(0);
849a30f8f8cSSatish Balay }
850a30f8f8cSSatish Balay 
8514a2ae208SSatish Balay #undef __FUNCT__
852a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
853dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
854a9d4b620SHong Zhang {
855a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
856dfbe8321SBarry Smith   PetscErrorCode ierr;
857521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
858a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
859a9d4b620SHong Zhang 
860a9d4b620SHong Zhang   PetscFunctionBegin;
861a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
862a9d4b620SHong Zhang   if (nt != A->n) {
863a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
864a9d4b620SHong Zhang   }
865a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
866a9d4b620SHong Zhang   if (nt != A->m) {
867a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
868a9d4b620SHong Zhang   }
869a9d4b620SHong Zhang 
870a9d4b620SHong Zhang   /* diagonal part */
871a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8722dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang   /* subdiagonal part */
875a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
876a9d4b620SHong Zhang 
877a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8781ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8791ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
880a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
8811ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
882a9d4b620SHong Zhang 
883a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
8841ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
885a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
886a9d4b620SHong Zhang 
887a9d4b620SHong Zhang   /* supperdiagonal part */
888a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
889a9d4b620SHong Zhang 
890a9d4b620SHong Zhang   PetscFunctionReturn(0);
891a9d4b620SHong Zhang }
892a9d4b620SHong Zhang 
893a9d4b620SHong Zhang #undef __FUNCT__
89440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
895dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
896a30f8f8cSSatish Balay {
897a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
898dfbe8321SBarry Smith   PetscErrorCode ierr;
8991302d50aSBarry Smith   PetscInt       nt;
900a30f8f8cSSatish Balay 
901a30f8f8cSSatish Balay   PetscFunctionBegin;
902a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
903b5df2d14SHong Zhang   if (nt != A->n) {
90429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
905a30f8f8cSSatish Balay   }
906a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
907b5df2d14SHong Zhang   if (nt != A->m) {
90829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
909a30f8f8cSSatish Balay   }
91065d70643SHong Zhang 
911b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
912b941877fSHong Zhang   /* do diagonal part */
913b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
914b941877fSHong Zhang   /* do supperdiagonal part */
915b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
916b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
917b941877fSHong Zhang   /* do subdiagonal part */
918b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
919b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
920b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
92165d70643SHong Zhang 
922a30f8f8cSSatish Balay   PetscFunctionReturn(0);
923a30f8f8cSSatish Balay }
924a30f8f8cSSatish Balay 
9254a2ae208SSatish Balay #undef __FUNCT__
9264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
927dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
928a30f8f8cSSatish Balay {
929de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
930dfbe8321SBarry Smith   PetscErrorCode ierr;
931521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
932a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang   PetscFunctionBegin;
935a9d4b620SHong Zhang   /*
93656faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
93756faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
938a9d4b620SHong Zhang   */
939a9d4b620SHong Zhang   /* diagonal part */
940a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9412dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
942a9d4b620SHong Zhang 
943a9d4b620SHong Zhang   /* subdiagonal part */
944a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
945a9d4b620SHong Zhang 
946a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9471ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9481ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
949a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9501ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
951a9d4b620SHong Zhang 
952a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9531ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
954a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
955a9d4b620SHong Zhang 
956a9d4b620SHong Zhang   /* supperdiagonal part */
957a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
958a9d4b620SHong Zhang 
959a9d4b620SHong Zhang   PetscFunctionReturn(0);
960a9d4b620SHong Zhang }
961a9d4b620SHong Zhang 
962a9d4b620SHong Zhang #undef __FUNCT__
963a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
964dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
965a9d4b620SHong Zhang {
966a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
967dfbe8321SBarry Smith   PetscErrorCode ierr;
968a30f8f8cSSatish Balay 
969a30f8f8cSSatish Balay   PetscFunctionBegin;
970b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
971b941877fSHong Zhang   /* do diagonal part */
972b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
973b941877fSHong Zhang   /* do supperdiagonal part */
974b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
975de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
976de8b6608SHong Zhang 
977b941877fSHong Zhang   /* do subdiagonal part */
978a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
979a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
980a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
981aa482183SHong Zhang 
982a30f8f8cSSatish Balay   PetscFunctionReturn(0);
983a30f8f8cSSatish Balay }
984a30f8f8cSSatish Balay 
985a30f8f8cSSatish Balay /*
986a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
987a30f8f8cSSatish Balay    diagonal block
988a30f8f8cSSatish Balay */
9894a2ae208SSatish Balay #undef __FUNCT__
9904a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
991dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
992a30f8f8cSSatish Balay {
993a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
994dfbe8321SBarry Smith   PetscErrorCode ierr;
995a30f8f8cSSatish Balay 
996a30f8f8cSSatish Balay   PetscFunctionBegin;
99729bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
998a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
999a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1000a30f8f8cSSatish Balay }
1001a30f8f8cSSatish Balay 
10024a2ae208SSatish Balay #undef __FUNCT__
10034a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1004f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1005a30f8f8cSSatish Balay {
1006a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1007dfbe8321SBarry Smith   PetscErrorCode ierr;
1008a30f8f8cSSatish Balay 
1009a30f8f8cSSatish Balay   PetscFunctionBegin;
1010f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1011f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1012a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1013a30f8f8cSSatish Balay }
1014a30f8f8cSSatish Balay 
10154a2ae208SSatish Balay #undef __FUNCT__
10164a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10171302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1018a30f8f8cSSatish Balay {
1019a30f8f8cSSatish Balay   PetscFunctionBegin;
1020d23016edSBarry Smith   if (matin) SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format");
1021a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1022a30f8f8cSSatish Balay }
1023a30f8f8cSSatish Balay 
10244a2ae208SSatish Balay #undef __FUNCT__
10254a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10261302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1027a30f8f8cSSatish Balay {
1028a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1029a30f8f8cSSatish Balay 
1030a30f8f8cSSatish Balay   PetscFunctionBegin;
1031abc0a331SBarry Smith   if (!baij->getrowactive) {
1032abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1033a30f8f8cSSatish Balay   }
1034a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1035a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1036a30f8f8cSSatish Balay }
1037a30f8f8cSSatish Balay 
10384a2ae208SSatish Balay #undef __FUNCT__
10394a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1040dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1041a30f8f8cSSatish Balay {
1042a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1043dfbe8321SBarry Smith   PetscErrorCode ierr;
1044a30f8f8cSSatish Balay 
1045a30f8f8cSSatish Balay   PetscFunctionBegin;
1046a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1047a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1048a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1049a30f8f8cSSatish Balay }
1050a30f8f8cSSatish Balay 
10514a2ae208SSatish Balay #undef __FUNCT__
10524a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1053dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1054a30f8f8cSSatish Balay {
1055a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1056a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1057dfbe8321SBarry Smith   PetscErrorCode ierr;
1058a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1059a30f8f8cSSatish Balay 
1060a30f8f8cSSatish Balay   PetscFunctionBegin;
1061521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1062a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1063a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1064a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1065a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1066a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1067a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1068a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1069a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1070a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1071a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1072a30f8f8cSSatish Balay     info->memory       = isend[3];
1073a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1074a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1075d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1076a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1077a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1078a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1079a30f8f8cSSatish Balay     info->memory       = irecv[3];
1080a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1081a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1082d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1083a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1084a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1085a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1086a30f8f8cSSatish Balay     info->memory       = irecv[3];
1087a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1088a30f8f8cSSatish Balay   } else {
108977431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1090a30f8f8cSSatish Balay   }
1091f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1092f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1093f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1094f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1095a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1096a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1097a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1098a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1099a30f8f8cSSatish Balay }
1100a30f8f8cSSatish Balay 
11014a2ae208SSatish Balay #undef __FUNCT__
11024a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1103dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1104a30f8f8cSSatish Balay {
1105a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1106dfbe8321SBarry Smith   PetscErrorCode ierr;
1107a30f8f8cSSatish Balay 
1108a30f8f8cSSatish Balay   PetscFunctionBegin;
1109e98b92d7SKris Buschelman   switch (op) {
1110e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1111e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1112e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1113e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1114e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1115e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1116e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1117a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1118a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1119e98b92d7SKris Buschelman     break;
1120e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1121a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1122a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1123a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1124e98b92d7SKris Buschelman     break;
1125e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1126e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1127e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
112863ba0a88SBarry Smith     ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr);
1129e98b92d7SKris Buschelman     break;
1130e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1131a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1132a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1133a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1134e98b92d7SKris Buschelman     break;
1135e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1136a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1137e98b92d7SKris Buschelman     break;
1138e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
113929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1140e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1141a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1142e98b92d7SKris Buschelman     break;
11439a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
11449a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
11459a4540c5SBarry Smith   case MAT_HERMITIAN:
11469a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
114777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
114877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
11499a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
11509a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
11519a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
115277e54ba9SKris Buschelman     break;
1153e98b92d7SKris Buschelman   default:
115429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1155a30f8f8cSSatish Balay   }
1156a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1157a30f8f8cSSatish Balay }
1158a30f8f8cSSatish Balay 
11594a2ae208SSatish Balay #undef __FUNCT__
11608115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1161dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1162a30f8f8cSSatish Balay {
1163dfbe8321SBarry Smith   PetscErrorCode ierr;
1164a30f8f8cSSatish Balay   PetscFunctionBegin;
1165999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
11668115998fSBarry Smith   PetscFunctionReturn(0);
1167a30f8f8cSSatish Balay }
1168a30f8f8cSSatish Balay 
11694a2ae208SSatish Balay #undef __FUNCT__
11704a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1171dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1172a30f8f8cSSatish Balay {
1173a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1174a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1175dfbe8321SBarry Smith   PetscErrorCode ierr;
11765e90f9d9SHong Zhang   PetscInt       nv,m,n;
1177b3bf805bSHong Zhang   PetscTruth     flg;
1178a30f8f8cSSatish Balay 
1179a30f8f8cSSatish Balay   PetscFunctionBegin;
1180a30f8f8cSSatish Balay   if (ll != rr){
1181b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1182b3bf805bSHong Zhang     if (!flg)
118329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1184a30f8f8cSSatish Balay   }
1185b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1186b3bf805bSHong Zhang 
11875e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
11885e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1189b3bf805bSHong Zhang 
11905e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
11915e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
11925e90f9d9SHong Zhang 
1193a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
11945e90f9d9SHong Zhang 
11955e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1196a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
11975e90f9d9SHong Zhang 
11985e90f9d9SHong Zhang   /* scale the diagonal part */
1199a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1200a30f8f8cSSatish Balay 
12015e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1202a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1203a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1204a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1205a30f8f8cSSatish Balay }
1206a30f8f8cSSatish Balay 
12074a2ae208SSatish Balay #undef __FUNCT__
12084a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1209dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1210a30f8f8cSSatish Balay {
1211a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1212a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
12131302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1214dfbe8321SBarry Smith   PetscErrorCode    ierr;
1215a30f8f8cSSatish Balay 
1216a30f8f8cSSatish Balay   PetscFunctionBegin;
1217a30f8f8cSSatish Balay   if (!a->rank) {
1218a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1219a30f8f8cSSatish Balay   }
12201302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1221a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1222a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1223a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1224a30f8f8cSSatish Balay }
1225a30f8f8cSSatish Balay 
12264a2ae208SSatish Balay #undef __FUNCT__
12274a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1228dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1229a30f8f8cSSatish Balay {
1230f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1231dfbe8321SBarry Smith   PetscErrorCode ierr;
1232a30f8f8cSSatish Balay 
1233a30f8f8cSSatish Balay   PetscFunctionBegin;
1234a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1236a30f8f8cSSatish Balay }
1237a30f8f8cSSatish Balay 
12386849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1239a30f8f8cSSatish Balay 
12404a2ae208SSatish Balay #undef __FUNCT__
12414a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1242dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1243a30f8f8cSSatish Balay {
1244a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1245a30f8f8cSSatish Balay   Mat            a,b,c,d;
1246a30f8f8cSSatish Balay   PetscTruth     flg;
1247dfbe8321SBarry Smith   PetscErrorCode ierr;
1248a30f8f8cSSatish Balay 
1249a30f8f8cSSatish Balay   PetscFunctionBegin;
1250a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1251a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1252a30f8f8cSSatish Balay 
1253a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1254abc0a331SBarry Smith   if (flg) {
1255a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1256a30f8f8cSSatish Balay   }
1257a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1258a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1259a30f8f8cSSatish Balay }
1260a30f8f8cSSatish Balay 
12614a2ae208SSatish Balay #undef __FUNCT__
12624a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1263dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1264273d9f13SBarry Smith {
1265dfbe8321SBarry Smith   PetscErrorCode ierr;
1266273d9f13SBarry Smith 
1267273d9f13SBarry Smith   PetscFunctionBegin;
1268273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1269273d9f13SBarry Smith   PetscFunctionReturn(0);
1270273d9f13SBarry Smith }
1271a5e6ed63SBarry Smith 
1272a5e6ed63SBarry Smith #undef __FUNCT__
1273a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
12741302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1275a5e6ed63SBarry Smith {
12766849ba73SBarry Smith   PetscErrorCode ierr;
12771302d50aSBarry Smith   PetscInt       i;
1278a5e6ed63SBarry Smith   PetscTruth     flg;
1279a5e6ed63SBarry Smith 
12806849ba73SBarry Smith   PetscFunctionBegin;
1281a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1282a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1283a5e6ed63SBarry Smith     if (!flg) {
12841302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1285a5e6ed63SBarry Smith     }
1286a5e6ed63SBarry Smith   }
1287a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1288a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1289a5e6ed63SBarry Smith }
1290a5e6ed63SBarry Smith 
1291a5e6ed63SBarry Smith 
1292a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1293a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1294a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1295a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1296a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1297a9d4b620SHong Zhang        MatMult_MPISBAIJ,
129897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1299431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1300431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1301a30f8f8cSSatish Balay        0,
1302a30f8f8cSSatish Balay        0,
1303a30f8f8cSSatish Balay        0,
130497304618SKris Buschelman /*10*/ 0,
1305a30f8f8cSSatish Balay        0,
1306a30f8f8cSSatish Balay        0,
13072798e883SHong Zhang        MatRelax_MPISBAIJ,
1308a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
130997304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1310a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1311a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1312a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1313a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
131497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1315a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1316a30f8f8cSSatish Balay        0,
1317a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1318a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1319dcf5cc72SBarry Smith /*25*/ 0,
1320a30f8f8cSSatish Balay        0,
1321a30f8f8cSSatish Balay        0,
1322a30f8f8cSSatish Balay        0,
1323a30f8f8cSSatish Balay        0,
132497304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1325b5df2d14SHong Zhang        0,
1326a30f8f8cSSatish Balay        0,
1327a30f8f8cSSatish Balay        0,
1328a30f8f8cSSatish Balay        0,
132997304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1330a30f8f8cSSatish Balay        0,
1331a30f8f8cSSatish Balay        0,
1332a30f8f8cSSatish Balay        0,
1333a30f8f8cSSatish Balay        0,
133497304618SKris Buschelman /*40*/ 0,
1335a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1336d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1337a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1338a30f8f8cSSatish Balay        0,
133997304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1340a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1341a30f8f8cSSatish Balay        0,
1342a30f8f8cSSatish Balay        0,
1343a30f8f8cSSatish Balay        0,
1344521d7252SBarry Smith /*50*/ 0,
1345a30f8f8cSSatish Balay        0,
1346a30f8f8cSSatish Balay        0,
1347a30f8f8cSSatish Balay        0,
1348a30f8f8cSSatish Balay        0,
134997304618SKris Buschelman /*55*/ 0,
1350a30f8f8cSSatish Balay        0,
1351a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1352a30f8f8cSSatish Balay        0,
1353a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
135497304618SKris Buschelman /*60*/ 0,
1355a30f8f8cSSatish Balay        0,
1356a30f8f8cSSatish Balay        0,
13578a124369SBarry Smith        MatGetPetscMaps_Petsc,
135824d5174aSHong Zhang        0,
135997304618SKris Buschelman /*65*/ 0,
136024d5174aSHong Zhang        0,
136124d5174aSHong Zhang        0,
136224d5174aSHong Zhang        0,
136324d5174aSHong Zhang        0,
136497304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
136524d5174aSHong Zhang        0,
136697304618SKris Buschelman        0,
136797304618SKris Buschelman        0,
136897304618SKris Buschelman        0,
136997304618SKris Buschelman /*75*/ 0,
137097304618SKris Buschelman        0,
137197304618SKris Buschelman        0,
137297304618SKris Buschelman        0,
137397304618SKris Buschelman        0,
137497304618SKris Buschelman /*80*/ 0,
137597304618SKris Buschelman        0,
137697304618SKris Buschelman        0,
137797304618SKris Buschelman        0,
1378865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1379865e5f61SKris Buschelman /*85*/ 0,
1380865e5f61SKris Buschelman        0,
1381865e5f61SKris Buschelman        0,
1382865e5f61SKris Buschelman        0,
1383865e5f61SKris Buschelman        0,
1384865e5f61SKris Buschelman /*90*/ 0,
1385865e5f61SKris Buschelman        0,
1386865e5f61SKris Buschelman        0,
1387865e5f61SKris Buschelman        0,
1388865e5f61SKris Buschelman        0,
1389865e5f61SKris Buschelman /*95*/ 0,
1390865e5f61SKris Buschelman        0,
1391865e5f61SKris Buschelman        0,
1392865e5f61SKris Buschelman        0};
1393a30f8f8cSSatish Balay 
1394a30f8f8cSSatish Balay 
1395a30f8f8cSSatish Balay EXTERN_C_BEGIN
13964a2ae208SSatish Balay #undef __FUNCT__
13974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1398be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1399a30f8f8cSSatish Balay {
1400a30f8f8cSSatish Balay   PetscFunctionBegin;
1401a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1402a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1403a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1404a30f8f8cSSatish Balay }
1405a30f8f8cSSatish Balay EXTERN_C_END
1406a30f8f8cSSatish Balay 
1407273d9f13SBarry Smith EXTERN_C_BEGIN
14084a2ae208SSatish Balay #undef __FUNCT__
1409a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1410be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1411a23d5eceSKris Buschelman {
1412a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1413dfbe8321SBarry Smith   PetscErrorCode ierr;
14141302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1415a23d5eceSKris Buschelman 
1416a23d5eceSKris Buschelman   PetscFunctionBegin;
1417a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1418a23d5eceSKris Buschelman 
1419a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1420a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1421a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
142277431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
142377431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1424a23d5eceSKris Buschelman   if (d_nnz) {
1425a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
142677431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1427a23d5eceSKris Buschelman     }
1428a23d5eceSKris Buschelman   }
1429a23d5eceSKris Buschelman   if (o_nnz) {
1430a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
143177431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1432a23d5eceSKris Buschelman     }
1433a23d5eceSKris Buschelman   }
1434a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1435a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1436a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1437a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1438a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1439a23d5eceSKris Buschelman 
1440a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1441a23d5eceSKris Buschelman   mbs = B->m/bs;
1442a23d5eceSKris Buschelman   Mbs = B->M/bs;
1443a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
144477431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1445a23d5eceSKris Buschelman   }
1446a23d5eceSKris Buschelman 
1447521d7252SBarry Smith   B->bs  = bs;
1448a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1449a23d5eceSKris Buschelman   b->mbs = mbs;
1450a23d5eceSKris Buschelman   b->nbs = mbs;
1451a23d5eceSKris Buschelman   b->Mbs = Mbs;
1452a23d5eceSKris Buschelman   b->Nbs = Mbs;
1453a23d5eceSKris Buschelman 
1454a7cc72afSBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
1455a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1456a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1457a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1458a23d5eceSKris Buschelman   }
1459a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1460a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1461a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1462a23d5eceSKris Buschelman   b->cend      = b->rend;
1463a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1464a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1465a23d5eceSKris Buschelman   }
1466a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1467a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1468a23d5eceSKris Buschelman 
1469a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1470a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1471a23d5eceSKris Buschelman 
1472f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1473f69a0ea3SMatthew Knepley   ierr = MatSetSizes(b->A,B->m,B->m,B->m,B->m);CHKERRQ(ierr);
14749c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1475c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
147652e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
14779c097c71SKris Buschelman 
1478f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1479f69a0ea3SMatthew Knepley   ierr = MatSetSizes(b->B,B->m,B->M,B->m,B->M);CHKERRQ(ierr);
14804aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1481589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
148252e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1483a23d5eceSKris Buschelman 
1484a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1485a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1486a23d5eceSKris Buschelman 
1487a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1488a23d5eceSKris Buschelman }
1489a23d5eceSKris Buschelman EXTERN_C_END
1490a23d5eceSKris Buschelman 
14910bad9183SKris Buschelman /*MC
1492fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
14930bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
14940bad9183SKris Buschelman 
14950bad9183SKris Buschelman    Options Database Keys:
14960bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
14970bad9183SKris Buschelman 
14980bad9183SKris Buschelman   Level: beginner
14990bad9183SKris Buschelman 
15000bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
15010bad9183SKris Buschelman M*/
15020bad9183SKris Buschelman 
1503a23d5eceSKris Buschelman EXTERN_C_BEGIN
1504a23d5eceSKris Buschelman #undef __FUNCT__
15054a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1506be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1507b5df2d14SHong Zhang {
1508b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1509dfbe8321SBarry Smith   PetscErrorCode ierr;
1510b5df2d14SHong Zhang   PetscTruth     flg;
1511b5df2d14SHong Zhang 
1512b5df2d14SHong Zhang   PetscFunctionBegin;
1513b5df2d14SHong Zhang 
1514b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1515b0a32e0cSBarry Smith   B->data = (void*)b;
1516b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1517b5df2d14SHong Zhang 
1518b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1519b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1520b5df2d14SHong Zhang   B->mapping    = 0;
1521b5df2d14SHong Zhang   B->factor     = 0;
1522b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1523b5df2d14SHong Zhang 
1524b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1525b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1526b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1527b5df2d14SHong Zhang 
1528b5df2d14SHong Zhang   /* build local table of row and column ownerships */
15291302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1530273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1531273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
153252e6d16bSBarry Smith   ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1533b5df2d14SHong Zhang 
1534b5df2d14SHong Zhang   /* build cache for off array entries formed */
1535b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1536b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1537b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1538b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1539b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1540b5df2d14SHong Zhang 
1541f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1542b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
154364a35ccbSBarry Smith   b->setvalueslen     = 0;
1544b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1545b5df2d14SHong Zhang #endif
1546b5df2d14SHong Zhang 
1547b5df2d14SHong Zhang   /* stuff used in block assembly */
1548b5df2d14SHong Zhang   b->barray       = 0;
1549b5df2d14SHong Zhang 
1550b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1551b5df2d14SHong Zhang   b->lvec         = 0;
1552b5df2d14SHong Zhang   b->Mvctx        = 0;
155340781036SHong Zhang   b->slvec0       = 0;
155440781036SHong Zhang   b->slvec0b      = 0;
155540781036SHong Zhang   b->slvec1       = 0;
155640781036SHong Zhang   b->slvec1a      = 0;
155740781036SHong Zhang   b->slvec1b      = 0;
155840781036SHong Zhang   b->sMvctx       = 0;
1559b5df2d14SHong Zhang 
1560b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1561b5df2d14SHong Zhang   b->rowindices   = 0;
1562b5df2d14SHong Zhang   b->rowvalues    = 0;
1563b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1564b5df2d14SHong Zhang 
1565b5df2d14SHong Zhang   /* hash table stuff */
1566b5df2d14SHong Zhang   b->ht           = 0;
1567b5df2d14SHong Zhang   b->hd           = 0;
1568b5df2d14SHong Zhang   b->ht_size      = 0;
1569b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1570b5df2d14SHong Zhang   b->ht_fact      = 0;
1571b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1572b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1573b5df2d14SHong Zhang 
1574e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1575b5df2d14SHong Zhang   if (flg) {
1576f6275e2eSBarry Smith     PetscReal fact = 1.39;
1577b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1578e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1579b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1580b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
158163ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr);
1582b5df2d14SHong Zhang   }
1583b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1584b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1585b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1586b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1587b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1588b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1589b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1590b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1591b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1592a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1593a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1594a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
159523ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
159623ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
159723ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
159823ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1599b5df2d14SHong Zhang   PetscFunctionReturn(0);
1600b5df2d14SHong Zhang }
1601273d9f13SBarry Smith EXTERN_C_END
1602b5df2d14SHong Zhang 
1603209238afSKris Buschelman /*MC
1604002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1605209238afSKris Buschelman 
1606209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1607209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1608209238afSKris Buschelman 
1609209238afSKris Buschelman    Options Database Keys:
1610209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1611209238afSKris Buschelman 
1612209238afSKris Buschelman   Level: beginner
1613209238afSKris Buschelman 
1614209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1615209238afSKris Buschelman M*/
1616209238afSKris Buschelman 
1617209238afSKris Buschelman EXTERN_C_BEGIN
1618209238afSKris Buschelman #undef __FUNCT__
1619209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1620be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1621dfbe8321SBarry Smith {
16226849ba73SBarry Smith   PetscErrorCode ierr;
16231302d50aSBarry Smith   PetscMPIInt    size;
1624209238afSKris Buschelman 
1625209238afSKris Buschelman   PetscFunctionBegin;
1626209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1627209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1628209238afSKris Buschelman   if (size == 1) {
1629209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1630209238afSKris Buschelman   } else {
1631209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1632209238afSKris Buschelman   }
1633209238afSKris Buschelman   PetscFunctionReturn(0);
1634209238afSKris Buschelman }
1635209238afSKris Buschelman EXTERN_C_END
1636209238afSKris Buschelman 
16374a2ae208SSatish Balay #undef __FUNCT__
16384a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1639b5df2d14SHong Zhang /*@C
1640b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1641b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1642b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1643b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1644b5df2d14SHong Zhang 
1645b5df2d14SHong Zhang    Collective on Mat
1646b5df2d14SHong Zhang 
1647b5df2d14SHong Zhang    Input Parameters:
1648b5df2d14SHong Zhang +  A - the matrix
1649b5df2d14SHong Zhang .  bs   - size of blockk
1650b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1651b5df2d14SHong Zhang            submatrix  (same for all local rows)
1652b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
16536d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
16546d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
16556d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1656b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1657b5df2d14SHong Zhang            submatrix (same for all local rows).
1658b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1659b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1660b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1661b5df2d14SHong Zhang 
1662b5df2d14SHong Zhang 
1663b5df2d14SHong Zhang    Options Database Keys:
1664b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1665b5df2d14SHong Zhang                      block calculations (much slower)
1666b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1667b5df2d14SHong Zhang 
1668b5df2d14SHong Zhang    Notes:
1669b5df2d14SHong Zhang 
1670b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1671b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1672b5df2d14SHong Zhang 
167349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
167449a6f317SBarry Smith 
1675b5df2d14SHong Zhang    Storage Information:
1676b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1677b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1678b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1679b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1680b5df2d14SHong Zhang 
1681b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1682b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1683b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1684b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1685b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1686b5df2d14SHong Zhang 
1687b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1688b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1689b5df2d14SHong Zhang 
1690b5df2d14SHong Zhang .vb
1691b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1692b5df2d14SHong Zhang           -------------------
1693b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1694b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1695b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1696b5df2d14SHong Zhang           -------------------
1697b5df2d14SHong Zhang .ve
1698b5df2d14SHong Zhang 
1699b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1700b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17016d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17026d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1703b5df2d14SHong Zhang 
17046d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17056d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1706b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1707b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1708b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1709b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1710b5df2d14SHong Zhang    matrices.
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang    Level: intermediate
1713b5df2d14SHong Zhang 
1714b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1715b5df2d14SHong Zhang 
1716b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1717b5df2d14SHong Zhang @*/
1718be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1719b5df2d14SHong Zhang {
17201302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1721b5df2d14SHong Zhang 
1722b5df2d14SHong Zhang   PetscFunctionBegin;
1723a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1724a23d5eceSKris Buschelman   if (f) {
1725a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1726b5df2d14SHong Zhang   }
1727b5df2d14SHong Zhang   PetscFunctionReturn(0);
1728b5df2d14SHong Zhang }
1729b5df2d14SHong Zhang 
17304a2ae208SSatish Balay #undef __FUNCT__
17314a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1732a30f8f8cSSatish Balay /*@C
1733a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1734a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1735a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1736a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1737a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1738a30f8f8cSSatish Balay 
1739a30f8f8cSSatish Balay    Collective on MPI_Comm
1740a30f8f8cSSatish Balay 
1741a30f8f8cSSatish Balay    Input Parameters:
1742a30f8f8cSSatish Balay +  comm - MPI communicator
1743a30f8f8cSSatish Balay .  bs   - size of blockk
1744a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1745a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1746a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1747a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1748a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1749a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1750a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1751a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1752a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1753a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1754a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
17556d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
17566d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
17576d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1758a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1759a30f8f8cSSatish Balay            submatrix (same for all local rows).
1760a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1761a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1762a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1763a30f8f8cSSatish Balay 
1764a30f8f8cSSatish Balay    Output Parameter:
1765a30f8f8cSSatish Balay .  A - the matrix
1766a30f8f8cSSatish Balay 
1767a30f8f8cSSatish Balay    Options Database Keys:
1768a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1769a30f8f8cSSatish Balay                      block calculations (much slower)
1770a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1771a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1772a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1773a30f8f8cSSatish Balay 
1774a30f8f8cSSatish Balay    Notes:
1775d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1776d1be2dadSMatthew Knepley 
1777a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1778a30f8f8cSSatish Balay    (possibly both).
1779a30f8f8cSSatish Balay 
1780a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1781a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1782a30f8f8cSSatish Balay 
178349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
178449a6f317SBarry Smith 
1785a30f8f8cSSatish Balay    Storage Information:
1786a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1787a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1788a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1789a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1790a30f8f8cSSatish Balay 
1791a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1792a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1793a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1794a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1795a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1796a30f8f8cSSatish Balay 
1797a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1798a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1799a30f8f8cSSatish Balay 
1800a30f8f8cSSatish Balay .vb
1801a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1802a30f8f8cSSatish Balay           -------------------
1803a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1804a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1805a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1806a30f8f8cSSatish Balay           -------------------
1807a30f8f8cSSatish Balay .ve
1808a30f8f8cSSatish Balay 
1809a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1810a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
18116d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18126d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1813a30f8f8cSSatish Balay 
18146d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18156d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1816a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1817a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1818a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1819a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1820a30f8f8cSSatish Balay    matrices.
1821a30f8f8cSSatish Balay 
1822a30f8f8cSSatish Balay    Level: intermediate
1823a30f8f8cSSatish Balay 
1824a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1825a30f8f8cSSatish Balay 
1826a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1827a30f8f8cSSatish Balay @*/
1828a30f8f8cSSatish Balay 
1829be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1830a30f8f8cSSatish Balay {
18316849ba73SBarry Smith   PetscErrorCode ierr;
18321302d50aSBarry Smith   PetscMPIInt    size;
1833a30f8f8cSSatish Balay 
1834a30f8f8cSSatish Balay   PetscFunctionBegin;
1835f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1836f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1837273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1838273d9f13SBarry Smith   if (size > 1) {
1839b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1840b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1841273d9f13SBarry Smith   } else {
1842273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1843273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1844273d9f13SBarry Smith   }
1845a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1846a30f8f8cSSatish Balay }
1847a30f8f8cSSatish Balay 
1848a30f8f8cSSatish Balay 
18494a2ae208SSatish Balay #undef __FUNCT__
18504a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
18516849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1852a30f8f8cSSatish Balay {
1853a30f8f8cSSatish Balay   Mat            mat;
1854a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1855dfbe8321SBarry Smith   PetscErrorCode ierr;
1856521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
1857387bc808SHong Zhang   PetscScalar    *array;
1858a30f8f8cSSatish Balay 
1859a30f8f8cSSatish Balay   PetscFunctionBegin;
1860a30f8f8cSSatish Balay   *newmat       = 0;
1861f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
1862f69a0ea3SMatthew Knepley   ierr = MatSetSizes(mat,matin->m,matin->n,matin->M,matin->N);CHKERRQ(ierr);
1863be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
18641d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1865e1b6402fSHong Zhang 
186682327fa8SHong Zhang   mat->factor       = matin->factor;
1867273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
186882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
18697fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
18707fff6886SHong Zhang 
1871b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1872521d7252SBarry Smith   mat->bs  = matin->bs;
1873a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
1874a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
1875a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
1876a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
1877a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
1878a30f8f8cSSatish Balay 
1879a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1880a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1881a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1882a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1883a30f8f8cSSatish Balay   a->size         = oldmat->size;
1884a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1885a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1886a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1887a30f8f8cSSatish Balay   a->rowindices   = 0;
1888a30f8f8cSSatish Balay   a->rowvalues    = 0;
1889a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1890a30f8f8cSSatish Balay   a->barray       = 0;
1891a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1892a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1893a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1894a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1895a30f8f8cSSatish Balay 
1896a30f8f8cSSatish Balay   /* hash table stuff */
1897a30f8f8cSSatish Balay   a->ht           = 0;
1898a30f8f8cSSatish Balay   a->hd           = 0;
1899a30f8f8cSSatish Balay   a->ht_size      = 0;
1900a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1901a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1902a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1903a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1904a30f8f8cSSatish Balay 
19051302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
1906a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
1907521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
1908a30f8f8cSSatish Balay   if (oldmat->colmap) {
1909a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
1910a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1911a30f8f8cSSatish Balay #else
19121302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
191352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
19141302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
1915a30f8f8cSSatish Balay #endif
1916a30f8f8cSSatish Balay   } else a->colmap = 0;
1917387bc808SHong Zhang 
1918a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
19191302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
192052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
19211302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
1922a30f8f8cSSatish Balay   } else a->garray = 0;
1923a30f8f8cSSatish Balay 
1924a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
192552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
1926a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
192752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
192882327fa8SHong Zhang 
192982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
193052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
193182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
193252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
1933387bc808SHong Zhang 
1934387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
19351ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
1936387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
1937387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
19381ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
19391ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
1940387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
19411ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
194252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
194352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
194452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
194552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
194652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
1947387bc808SHong Zhang 
1948387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
1949387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
1950387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
195152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
195282327fa8SHong Zhang 
1953a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
195452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
1955a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
195652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
1957b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
1958a30f8f8cSSatish Balay   *newmat = mat;
1959a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1960a30f8f8cSSatish Balay }
1961a30f8f8cSSatish Balay 
1962a30f8f8cSSatish Balay #include "petscsys.h"
1963a30f8f8cSSatish Balay 
19644a2ae208SSatish Balay #undef __FUNCT__
19654a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
1966f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
1967a30f8f8cSSatish Balay {
1968a30f8f8cSSatish Balay   Mat            A;
19696849ba73SBarry Smith   PetscErrorCode ierr;
197013f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
197187828ca2SBarry Smith   PetscScalar    *vals,*buf;
1972a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
1973a30f8f8cSSatish Balay   MPI_Status     status;
19742fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
197513f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
19762fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
19771302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
19781302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
19791302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
198013f74950SBarry Smith   int            fd;
1981a30f8f8cSSatish Balay 
1982a30f8f8cSSatish Balay   PetscFunctionBegin;
1983b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1984a30f8f8cSSatish Balay 
1985a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1986a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1987a30f8f8cSSatish Balay   if (!rank) {
1988b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1989a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1990552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
1991a30f8f8cSSatish Balay     if (header[3] < 0) {
199229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
1993a30f8f8cSSatish Balay     }
1994a30f8f8cSSatish Balay   }
1995a30f8f8cSSatish Balay 
1996a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
1997a30f8f8cSSatish Balay   M = header[1]; N = header[2];
1998a30f8f8cSSatish Balay 
199929bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2000a30f8f8cSSatish Balay 
2001a30f8f8cSSatish Balay   /*
2002a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2003a30f8f8cSSatish Balay      divisible by the blocksize
2004a30f8f8cSSatish Balay   */
2005a30f8f8cSSatish Balay   Mbs        = M/bs;
2006a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2007a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2008a30f8f8cSSatish Balay   else                  Mbs++;
2009a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
201063ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
2011a30f8f8cSSatish Balay   }
2012a30f8f8cSSatish Balay 
2013a30f8f8cSSatish Balay   /* determine ownership of all rows */
2014a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2015a30f8f8cSSatish Balay   m          = mbs*bs;
2016a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2017a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2018a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2019a30f8f8cSSatish Balay   rowners[0] = 0;
2020a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2021a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2022a30f8f8cSSatish Balay   rstart = rowners[rank];
2023a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2024a30f8f8cSSatish Balay 
2025a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
20262fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2027a30f8f8cSSatish Balay   if (!rank) {
20281302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2029a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2030a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2031a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2032a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2033a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2034a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2035a30f8f8cSSatish Balay   } else {
2036a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2037a30f8f8cSSatish Balay   }
2038a30f8f8cSSatish Balay 
20390222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2040a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
20411302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
20421302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2043a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2044a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2045a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2046a30f8f8cSSatish Balay       }
2047a30f8f8cSSatish Balay     }
2048a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2049a30f8f8cSSatish Balay 
2050a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2051a30f8f8cSSatish Balay     maxnz = 0;
2052a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2053a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2054a30f8f8cSSatish Balay     }
20551302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2056a30f8f8cSSatish Balay 
2057a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2058a30f8f8cSSatish Balay     nz     = procsnz[0];
20591302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2060a30f8f8cSSatish Balay     mycols = ibuf;
2061a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2062a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2063a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2064a30f8f8cSSatish Balay 
2065a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2066a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2067a30f8f8cSSatish Balay       nz   = procsnz[i];
2068a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2069a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2070a30f8f8cSSatish Balay     }
2071a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2072a30f8f8cSSatish Balay     if (size != 1) {
2073a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2074a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2075a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2076a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2077a30f8f8cSSatish Balay     }
2078a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
20790222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2080a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2081a30f8f8cSSatish Balay     nz = 0;
2082a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2083a30f8f8cSSatish Balay       nz += locrowlens[i];
2084a30f8f8cSSatish Balay     }
20851302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2086a30f8f8cSSatish Balay     mycols = ibuf;
2087a30f8f8cSSatish Balay     /* receive message of column indices*/
2088a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2089a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
209029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2091a30f8f8cSSatish Balay   }
2092a30f8f8cSSatish Balay 
2093a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
20941302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2095a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
20961302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
20971302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2098a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2099a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2100a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2101a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2102a30f8f8cSSatish Balay     dcount  = 0;
2103a30f8f8cSSatish Balay     odcount = 0;
2104a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2105a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2106a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21070222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2108a30f8f8cSSatish Balay         if (!mask[tmp]) {
2109a30f8f8cSSatish Balay           mask[tmp] = 1;
21100222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
21110222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2112a30f8f8cSSatish Balay         }
2113a30f8f8cSSatish Balay       }
2114a30f8f8cSSatish Balay       rowcount++;
2115a30f8f8cSSatish Balay     }
2116a30f8f8cSSatish Balay 
21170222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
21180222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2119a30f8f8cSSatish Balay 
2120a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2121a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2122a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2123a30f8f8cSSatish Balay   }
2124a30f8f8cSSatish Balay 
2125a30f8f8cSSatish Balay   /* create our matrix */
2126f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2127f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
212822191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
212922191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2130273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2131a30f8f8cSSatish Balay 
2132a30f8f8cSSatish Balay   if (!rank) {
213387828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2134a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2135a30f8f8cSSatish Balay     nz = procsnz[0];
2136a30f8f8cSSatish Balay     vals = buf;
2137a30f8f8cSSatish Balay     mycols = ibuf;
2138a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2139a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2140a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2141a30f8f8cSSatish Balay 
2142a30f8f8cSSatish Balay     /* insert into matrix */
2143a30f8f8cSSatish Balay     jj      = rstart*bs;
2144a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
21457e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2146a30f8f8cSSatish Balay       mycols += locrowlens[i];
2147a30f8f8cSSatish Balay       vals   += locrowlens[i];
2148a30f8f8cSSatish Balay       jj++;
2149a30f8f8cSSatish Balay     }
21507e06b45fSHong Zhang 
2151a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2152a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2153a30f8f8cSSatish Balay       nz   = procsnz[i];
2154a30f8f8cSSatish Balay       vals = buf;
2155a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2156a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2157a30f8f8cSSatish Balay     }
2158a30f8f8cSSatish Balay     /* the last proc */
2159a30f8f8cSSatish Balay     if (size != 1){
2160a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2161a30f8f8cSSatish Balay       vals = buf;
2162a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2163a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2164a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2165a30f8f8cSSatish Balay     }
2166a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
21677e06b45fSHong Zhang 
2168a30f8f8cSSatish Balay   } else {
2169a30f8f8cSSatish Balay     /* receive numeric values */
217087828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay 
2172a30f8f8cSSatish Balay     /* receive message of values*/
2173a30f8f8cSSatish Balay     vals   = buf;
2174a30f8f8cSSatish Balay     mycols = ibuf;
2175a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2176a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
217729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2178a30f8f8cSSatish Balay 
2179a30f8f8cSSatish Balay     /* insert into matrix */
2180a30f8f8cSSatish Balay     jj      = rstart*bs;
2181a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2182a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2183a30f8f8cSSatish Balay       mycols += locrowlens[i];
2184a30f8f8cSSatish Balay       vals   += locrowlens[i];
2185a30f8f8cSSatish Balay       jj++;
2186a30f8f8cSSatish Balay     }
2187a30f8f8cSSatish Balay   }
21887e06b45fSHong Zhang 
2189a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2190a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2191a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2192a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2193a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2195a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2196a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
219722191285SKris Buschelman   *newmat = A;
2198a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2199a30f8f8cSSatish Balay }
2200a30f8f8cSSatish Balay 
22014a2ae208SSatish Balay #undef __FUNCT__
22024a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2203dcf5cc72SBarry Smith /*XXXXX@
2204a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2205a30f8f8cSSatish Balay 
2206a30f8f8cSSatish Balay    Input Parameters:
2207a30f8f8cSSatish Balay .  mat  - the matrix
2208a30f8f8cSSatish Balay .  fact - factor
2209a30f8f8cSSatish Balay 
2210a30f8f8cSSatish Balay    Collective on Mat
2211a30f8f8cSSatish Balay 
2212a30f8f8cSSatish Balay    Level: advanced
2213a30f8f8cSSatish Balay 
2214a30f8f8cSSatish Balay   Notes:
2215a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2216a30f8f8cSSatish Balay 
2217a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2218a30f8f8cSSatish Balay 
2219a30f8f8cSSatish Balay .seealso: MatSetOption()
2220dcf5cc72SBarry Smith @XXXXX*/
2221dcf5cc72SBarry Smith 
222224d5174aSHong Zhang 
22234a2ae208SSatish Balay #undef __FUNCT__
22244a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2225dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
222624d5174aSHong Zhang {
222724d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2228f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2229ca54ac64SHong Zhang   PetscReal      atmp;
223087828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2231dfbe8321SBarry Smith   PetscErrorCode ierr;
22321302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
22331302d50aSBarry Smith   PetscMPIInt    rank,size;
22341302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
223587828ca2SBarry Smith   PetscScalar    *va;
22368a1c53f2SBarry Smith   MatScalar      *ba;
2237f4c0e9e4SHong Zhang   MPI_Status     stat;
223824d5174aSHong Zhang 
223924d5174aSHong Zhang   PetscFunctionBegin;
2240d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
22411ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2242f4c0e9e4SHong Zhang 
224356faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
224456faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2245f4c0e9e4SHong Zhang 
2246521d7252SBarry Smith   bs   = A->bs;
2247f4c0e9e4SHong Zhang   mbs  = a->mbs;
2248f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2249f4c0e9e4SHong Zhang   ba   = b->a;
2250f4c0e9e4SHong Zhang   bi   = b->i;
2251f4c0e9e4SHong Zhang   bj   = b->j;
2252f4c0e9e4SHong Zhang 
2253f4c0e9e4SHong Zhang   /* find ownerships */
2254f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2255f4c0e9e4SHong Zhang 
2256f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
225782502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2258ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2259f4c0e9e4SHong Zhang 
2260f4c0e9e4SHong Zhang   /* row_max for B */
2261b8475685SHong Zhang   if (rank != size-1){
2262f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2263f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2264f4c0e9e4SHong Zhang       brow  = bs*i;
2265f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2266f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2267f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2268ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
226904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2270f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2271f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2272ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2273ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2274f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2275f4c0e9e4SHong Zhang           }
2276f4c0e9e4SHong Zhang         }
2277f4c0e9e4SHong Zhang         bj++;
2278f4c0e9e4SHong Zhang       }
2279f4c0e9e4SHong Zhang     }
2280f4c0e9e4SHong Zhang 
2281f4c0e9e4SHong Zhang     /* send values to its owners */
2282f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2283f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2284ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
228556faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2286ca54ac64SHong Zhang     }
2287f4c0e9e4SHong Zhang   }
2288f4c0e9e4SHong Zhang 
2289f4c0e9e4SHong Zhang   /* receive values */
2290ca54ac64SHong Zhang   if (rank){
2291f4c0e9e4SHong Zhang     rvalues = work;
2292ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2293f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
229456faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2295f4c0e9e4SHong Zhang       /* process values */
2296f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2297ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2298f4c0e9e4SHong Zhang       }
2299f4c0e9e4SHong Zhang     }
2300ca54ac64SHong Zhang   }
2301f4c0e9e4SHong Zhang 
23021ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2303ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
230424d5174aSHong Zhang   PetscFunctionReturn(0);
230524d5174aSHong Zhang }
23062798e883SHong Zhang 
23072798e883SHong Zhang #undef __FUNCT__
23082798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
23091302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
23102798e883SHong Zhang {
23112798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2312dfbe8321SBarry Smith   PetscErrorCode ierr;
2313521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2314efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2315ffe4fb16SHong Zhang   Vec            bb1;
2316ffe4fb16SHong Zhang 
2317ffe4fb16SHong Zhang   PetscFunctionBegin;
231877431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2319ffe4fb16SHong Zhang   if (bs > 1)
2320ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2321ffe4fb16SHong Zhang 
2322ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2323ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2324ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2325ffe4fb16SHong Zhang       its--;
2326ffe4fb16SHong Zhang     }
2327ffe4fb16SHong Zhang 
2328ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2329ffe4fb16SHong Zhang     while (its--){
2330ffe4fb16SHong Zhang 
2331ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2332ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2333ffe4fb16SHong Zhang 
2334ffe4fb16SHong Zhang       /* copy xx into slvec0a */
23351ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
23361ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2337ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
23381ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2339ffe4fb16SHong Zhang 
2340efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2341ffe4fb16SHong Zhang 
2342ffe4fb16SHong Zhang       /* copy bb into slvec1a */
23431ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
23441ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2345ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
23461ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2347ffe4fb16SHong Zhang 
2348ffe4fb16SHong Zhang       /* set slvec1b = 0 */
23492dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2350ffe4fb16SHong Zhang 
2351ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
23521ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
23531ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2354ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2355ffe4fb16SHong Zhang 
2356ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2357ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2358ffe4fb16SHong Zhang 
2359ffe4fb16SHong Zhang       /* local diagonal sweep */
2360ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2361ffe4fb16SHong Zhang     }
2362ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2363ffe4fb16SHong Zhang   } else {
2364ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2365ffe4fb16SHong Zhang   }
2366ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2367ffe4fb16SHong Zhang }
2368ffe4fb16SHong Zhang 
2369ffe4fb16SHong Zhang #undef __FUNCT__
2370ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
23711302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2372ffe4fb16SHong Zhang {
2373ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2374dfbe8321SBarry Smith   PetscErrorCode ierr;
23752798e883SHong Zhang   Vec            lvec1,bb1;
23762798e883SHong Zhang 
23772798e883SHong Zhang   PetscFunctionBegin;
237877431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2379521d7252SBarry Smith   if (matin->bs > 1)
23802798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
23812798e883SHong Zhang 
2382c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
23832798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2384bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
23852798e883SHong Zhang       its--;
23862798e883SHong Zhang     }
23872798e883SHong Zhang 
23882798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
23892798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
23902798e883SHong Zhang     while (its--){
23912798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
23922798e883SHong Zhang 
23932798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
23942798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2395efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
23962798e883SHong Zhang 
23972798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
23982798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
23992798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24002798e883SHong Zhang 
24012798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2402efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
24032798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
24042798e883SHong Zhang 
24052798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24062798e883SHong Zhang 
2407c14dc6b6SHong Zhang       /* diagonal sweep */
2408bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
24092798e883SHong Zhang     }
24102798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
24112798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2412c14dc6b6SHong Zhang   } else {
2413c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2414c14dc6b6SHong Zhang   }
24152798e883SHong Zhang   PetscFunctionReturn(0);
24162798e883SHong Zhang }
24172798e883SHong Zhang 
2418