1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined" 24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 24136bd2089SBarry Smith { 24236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 24336bd2089SBarry Smith PetscErrorCode ierr; 24436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 24536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 24636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 24736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24836bd2089SBarry Smith const PetscScalar *value = v; 24936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 25036bd2089SBarry Smith 25136bd2089SBarry Smith PetscFunctionBegin; 25236bd2089SBarry Smith if (col < row) { 25336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 25436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 25536bd2089SBarry Smith } 25636bd2089SBarry Smith rp = aj + ai[row]; 25736bd2089SBarry Smith ap = aa + bs2*ai[row]; 25836bd2089SBarry Smith rmax = imax[row]; 25936bd2089SBarry Smith nrow = ailen[row]; 26036bd2089SBarry Smith value = v; 26136bd2089SBarry Smith low = 0; 26236bd2089SBarry Smith high = nrow; 26336bd2089SBarry Smith 26436bd2089SBarry Smith while (high-low > 7) { 26536bd2089SBarry Smith t = (low+high)/2; 26636bd2089SBarry Smith if (rp[t] > col) high = t; 26736bd2089SBarry Smith else low = t; 26836bd2089SBarry Smith } 26936bd2089SBarry Smith for (i=low; i<high; i++) { 27036bd2089SBarry Smith if (rp[i] > col) break; 27136bd2089SBarry Smith if (rp[i] == col) { 27236bd2089SBarry Smith bap = ap + bs2*i; 27336bd2089SBarry Smith if (roworiented) { 27436bd2089SBarry Smith if (is == ADD_VALUES) { 27536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27736bd2089SBarry Smith bap[jj] += *value++; 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } 28036bd2089SBarry Smith } else { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 28336bd2089SBarry Smith bap[jj] = *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } 28736bd2089SBarry Smith } else { 28836bd2089SBarry Smith if (is == ADD_VALUES) { 28936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29136bd2089SBarry Smith *bap++ += *value++; 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith } else { 29536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29736bd2089SBarry Smith *bap++ = *value++; 29836bd2089SBarry Smith } 29936bd2089SBarry Smith } 30036bd2089SBarry Smith } 30136bd2089SBarry Smith } 30236bd2089SBarry Smith goto noinsert2; 30336bd2089SBarry Smith } 30436bd2089SBarry Smith } 30536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 30636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 30736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30836bd2089SBarry Smith N = nrow++ - 1; high++; 30936bd2089SBarry Smith /* shift up all the later entries in this row */ 31036bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 31136bd2089SBarry Smith rp[ii+1] = rp[ii]; 31236bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 31336bd2089SBarry Smith } 31436bd2089SBarry Smith if (N >= i) { 31536bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 31636bd2089SBarry Smith } 31736bd2089SBarry Smith rp[i] = col; 31836bd2089SBarry Smith bap = ap + bs2*i; 31936bd2089SBarry Smith if (roworiented) { 32036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 32236bd2089SBarry Smith bap[jj] = *value++; 32336bd2089SBarry Smith } 32436bd2089SBarry Smith } 32536bd2089SBarry Smith } else { 32636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32836bd2089SBarry Smith *bap++ = *value++; 32936bd2089SBarry Smith } 33036bd2089SBarry Smith } 33136bd2089SBarry Smith } 33236bd2089SBarry Smith noinsert2:; 33336bd2089SBarry Smith ailen[row] = nrow; 33436bd2089SBarry Smith PetscFunctionReturn(0); 33536bd2089SBarry Smith } 33636bd2089SBarry Smith 33736bd2089SBarry Smith #undef __FUNCT__ 33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 33936bd2089SBarry Smith /* 34036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 34136bd2089SBarry Smith */ 34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34336bd2089SBarry Smith { 34436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscErrorCode ierr; 34836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 35036bd2089SBarry Smith const PetscScalar *value = v; 35136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35236bd2089SBarry Smith 35336bd2089SBarry Smith PetscFunctionBegin; 35436bd2089SBarry Smith rp = aj + ai[row]; 35536bd2089SBarry Smith ap = aa + bs2*ai[row]; 35636bd2089SBarry Smith rmax = imax[row]; 35736bd2089SBarry Smith nrow = ailen[row]; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith bap[jj] += value[jj]; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith bap += bs; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } else { 39336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 39436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39536bd2089SBarry Smith bap[jj] = value[jj]; 39636bd2089SBarry Smith } 39736bd2089SBarry Smith bap += bs; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith goto noinsert2; 40236bd2089SBarry Smith } 40336bd2089SBarry Smith } 40436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 40636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40736bd2089SBarry Smith N = nrow++ - 1; high++; 40836bd2089SBarry Smith /* shift up all the later entries in this row */ 40936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 41036bd2089SBarry Smith rp[ii+1] = rp[ii]; 41136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith if (N >= i) { 41436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp[i] = col; 41736bd2089SBarry Smith bap = ap + bs2*i; 41836bd2089SBarry Smith if (roworiented) { 41936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 42136bd2089SBarry Smith bap[jj] = *value++; 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith } else { 42536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42736bd2089SBarry Smith *bap++ = *value++; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith } 43036bd2089SBarry Smith } 43136bd2089SBarry Smith noinsert2:; 43236bd2089SBarry Smith ailen[row] = nrow; 43336bd2089SBarry Smith PetscFunctionReturn(0); 43436bd2089SBarry Smith } 43536bd2089SBarry Smith 43636bd2089SBarry Smith #undef __FUNCT__ 437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 43836bd2089SBarry Smith /* 43936bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 44036bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 44136bd2089SBarry Smith */ 442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 443a30f8f8cSSatish Balay { 4440880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 445f15d580aSBarry Smith const MatScalar *value; 446f15d580aSBarry Smith MatScalar *barray =baij->barray; 447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 450899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 451d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4520880e062SHong Zhang 453a30f8f8cSSatish Balay PetscFunctionBegin; 4540880e062SHong Zhang if (!barray) { 455785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4560880e062SHong Zhang baij->barray = barray; 4570880e062SHong Zhang } 4580880e062SHong Zhang 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang stepval = (n-1)*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang stepval = (m-1)*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (i=0; i<m; i++) { 4650880e062SHong Zhang if (im[i] < 0) continue; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4680880e062SHong Zhang #endif 4690880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4700880e062SHong Zhang row = im[i] - rstart; 4710880e062SHong Zhang for (j=0; j<n; j++) { 472f3f98c53SJed Brown if (im[i] > in[j]) { 473f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 474e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 475f3f98c53SJed Brown } 4760880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4770880e062SHong Zhang if ((roworiented) && (n == 1)) { 478f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4790880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 480f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4810880e062SHong Zhang } else { /* Here a copy is required */ 4820880e062SHong Zhang if (roworiented) { 4830880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4840880e062SHong Zhang } else { 4850880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4860880e062SHong Zhang } 4870880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4880880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4890880e062SHong Zhang *barray++ = *value++; 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang barray -=bs2; 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4960880e062SHong Zhang col = in[j] - cstart; 49736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 49826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 500bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang else { 5030880e062SHong Zhang if (mat->was_assembled) { 5040880e062SHong Zhang if (!baij->colmap) { 505ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5060880e062SHong Zhang } 5070880e062SHong Zhang 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5101302d50aSBarry Smith { PetscInt data; 5110880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 512e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5130880e062SHong Zhang } 5140880e062SHong Zhang #else 515e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5160880e062SHong Zhang #endif 5170880e062SHong Zhang #endif 5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5190880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5200880e062SHong Zhang col = (col - 1)/bs; 5210880e062SHong Zhang #else 5220880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5230880e062SHong Zhang #endif 5240880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 525ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5260880e062SHong Zhang col = in[j]; 5270880e062SHong Zhang } 52826fbe8dcSKarl Rupp } else col = in[j]; 52936bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5300880e062SHong Zhang } 5310880e062SHong Zhang } 5320880e062SHong Zhang } else { 533bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5340880e062SHong Zhang if (!baij->donotstash) { 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5370880e062SHong Zhang } else { 5380880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5390880e062SHong Zhang } 5400880e062SHong Zhang } 5410880e062SHong Zhang } 5420880e062SHong Zhang } 5430880e062SHong Zhang PetscFunctionReturn(0); 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 553d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 558e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 563e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data--; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 594dfbe8321SBarry Smith PetscErrorCode ierr; 595a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay if (baij->size == 1) { 599a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 600a30f8f8cSSatish Balay } else { 601a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 602785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 605a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 607b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6088f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 609a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6100b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6110b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6120b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6130b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 614899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 615d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6160b8dc8d2SHong Zhang MatScalar *v; 6170b8dc8d2SHong Zhang 618dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 619d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6200b8dc8d2SHong Zhang /* Amat */ 6210b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6220b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6230b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6240b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6250b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6260b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6270b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6280b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6290b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6300b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6310b8dc8d2SHong Zhang /* non-diagonal block */ 6320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6330b8dc8d2SHong Zhang } 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 63651f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 6370b8dc8d2SHong Zhang } 6380b8dc8d2SHong Zhang /* Bmat */ 6390b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6420b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6440b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6450b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6460b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6490b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6500b8dc8d2SHong Zhang } 6510b8dc8d2SHong Zhang } 6520b8dc8d2SHong Zhang } 65351f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 6540b8dc8d2SHong Zhang } 655b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6560b8dc8d2SHong Zhang *norm = 0.0; 657d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6580b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6590b8dc8d2SHong Zhang } 66074ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 661f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 6664a2ae208SSatish Balay #undef __FUNCT__ 6674a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 668dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 669a30f8f8cSSatish Balay { 670a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 671dfbe8321SBarry Smith PetscErrorCode ierr; 6721302d50aSBarry Smith PetscInt nstash,reallocs; 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay PetscFunctionBegin; 67526fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 676a30f8f8cSSatish Balay 677d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6781e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 679a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6801e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 681a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6821e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 683a30f8f8cSSatish Balay PetscFunctionReturn(0); 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay 6864a2ae208SSatish Balay #undef __FUNCT__ 6874a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 688dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 689a30f8f8cSSatish Balay { 690a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 691a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6926849ba73SBarry Smith PetscErrorCode ierr; 69313f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 694e44c0bd4SBarry Smith PetscInt *row,*col; 695ace3abfcSBarry Smith PetscBool other_disassembled; 69613f74950SBarry Smith PetscMPIInt n; 697ace3abfcSBarry Smith PetscBool r1,r2,r3; 698a30f8f8cSSatish Balay MatScalar *val; 699a30f8f8cSSatish Balay 70091c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 701a30f8f8cSSatish Balay PetscFunctionBegin; 7024cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 703a30f8f8cSSatish Balay while (1) { 704a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 705a30f8f8cSSatish Balay if (!flg) break; 706a30f8f8cSSatish Balay 707a30f8f8cSSatish Balay for (i=0; i<n;) { 708a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 70926fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 71026fbe8dcSKarl Rupp if (row[j] != rstart) break; 71126fbe8dcSKarl Rupp } 712a30f8f8cSSatish Balay if (j < n) ncols = j-i; 713a30f8f8cSSatish Balay else ncols = n-i; 714a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7154b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 716a30f8f8cSSatish Balay i = j; 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 720a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 721a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 722a30f8f8cSSatish Balay restore the original flags */ 723a30f8f8cSSatish Balay r1 = baij->roworiented; 724a30f8f8cSSatish Balay r2 = a->roworiented; 72591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 72626fbe8dcSKarl Rupp 727a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 728a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 72926fbe8dcSKarl Rupp 73091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 731a30f8f8cSSatish Balay while (1) { 732a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 733a30f8f8cSSatish Balay if (!flg) break; 734a30f8f8cSSatish Balay 735a30f8f8cSSatish Balay for (i=0; i<n;) { 736a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 73726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 73826fbe8dcSKarl Rupp if (row[j] != rstart) break; 73926fbe8dcSKarl Rupp } 740a30f8f8cSSatish Balay if (j < n) ncols = j-i; 741a30f8f8cSSatish Balay else ncols = n-i; 7424b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 743a30f8f8cSSatish Balay i = j; 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 74726fbe8dcSKarl Rupp 748a30f8f8cSSatish Balay baij->roworiented = r1; 749a30f8f8cSSatish Balay a->roworiented = r2; 75026fbe8dcSKarl Rupp 75191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay 754a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 756a30f8f8cSSatish Balay 757a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 758a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 759a30f8f8cSSatish Balay /* 760a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 761a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 762a30f8f8cSSatish Balay */ 763a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 764b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 765a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 766ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay 770a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 77140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 775a30f8f8cSSatish Balay 77674ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77726fbe8dcSKarl Rupp 778a30f8f8cSSatish Balay baij->rowvalues = 0; 7794f9cfa9eSBarry Smith 7804f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7814f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 782e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 783b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 784e56f5c9eSBarry Smith } 785a30f8f8cSSatish Balay PetscFunctionReturn(0); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay 788383922c3SLisandro Dalcin extern PetscErrorCode MatView_SeqSBAIJ(Mat,PetscViewer); 789dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7909804daf3SBarry Smith #include <petscdraw.h> 7914a2ae208SSatish Balay #undef __FUNCT__ 7924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 794a30f8f8cSSatish Balay { 795a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 796dfbe8321SBarry Smith PetscErrorCode ierr; 797d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 7987da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 799ace3abfcSBarry Smith PetscBool iascii,isdraw; 800b0a32e0cSBarry Smith PetscViewer sviewer; 801f3ef73ceSBarry Smith PetscViewerFormat format; 802a30f8f8cSSatish Balay 803a30f8f8cSSatish Balay PetscFunctionBegin; 804251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 805251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 80632077d6dSBarry Smith if (iascii) { 807b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 808456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 809a30f8f8cSSatish Balay MatInfo info; 810ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 811a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8121575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 8137b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 815e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 816a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 817e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 818b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8191575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 82007d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 822a30f8f8cSSatish Balay PetscFunctionReturn(0); 823fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 82477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 825a30f8f8cSSatish Balay PetscFunctionReturn(0); 826c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 827c1490034SHong Zhang PetscFunctionReturn(0); 828a30f8f8cSSatish Balay } 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay if (isdraw) { 832b0a32e0cSBarry Smith PetscDraw draw; 833ace3abfcSBarry Smith PetscBool isnull; 834b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 83545f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 83645f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 837a30f8f8cSSatish Balay } 838a30f8f8cSSatish Balay 8397da1fb6eSBarry Smith { 840a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 841a30f8f8cSSatish Balay Mat A; 84265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 844d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 845a30f8f8cSSatish Balay MatScalar *a; 8463e219373SBarry Smith const char *matname; 847a30f8f8cSSatish Balay 848f204ca49SKris Buschelman /* Should this be the same type as mat? */ 849ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 850a30f8f8cSSatish Balay if (!rank) { 851f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 852a30f8f8cSSatish Balay } else { 853f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 854a30f8f8cSSatish Balay } 855f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8560298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8572b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 859a30f8f8cSSatish Balay 860a30f8f8cSSatish Balay /* copy over the A part */ 86165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 862a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 863785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 864a30f8f8cSSatish Balay 865a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 866e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 86726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 868a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 869e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 870a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 871dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 87226fbe8dcSKarl Rupp col++; 87326fbe8dcSKarl Rupp a += bs; 874a30f8f8cSSatish Balay } 875a30f8f8cSSatish Balay } 876a30f8f8cSSatish Balay } 877a30f8f8cSSatish Balay /* copy over the B part */ 87865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 87965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 880a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 881e9f7bc9eSHong Zhang 882e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 88326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 884a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 885a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 886a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 887799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 88826fbe8dcSKarl Rupp col++; 88926fbe8dcSKarl Rupp a += bs; 890a30f8f8cSSatish Balay } 891a30f8f8cSSatish Balay } 892a30f8f8cSSatish Balay } 893a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 894a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 895a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 896a30f8f8cSSatish Balay /* 897a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 898b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 899a30f8f8cSSatish Balay */ 9003f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 901ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9023e219373SBarry Smith if (!rank) { 903ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 904383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 905a30f8f8cSSatish Balay } 9063f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9071575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9086bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 909a30f8f8cSSatish Balay } 910a30f8f8cSSatish Balay PetscFunctionReturn(0); 911a30f8f8cSSatish Balay } 912a30f8f8cSSatish Balay 9134a2ae208SSatish Balay #undef __FUNCT__ 914d1654148SHong Zhang #define __FUNCT__ "MatView_MPISBAIJ_Binary" 915d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer) 916d1654148SHong Zhang { 917d1654148SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 918d1654148SHong Zhang Mat_SeqSBAIJ *A = (Mat_SeqSBAIJ*)a->A->data; 919d1654148SHong Zhang Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 920d1654148SHong Zhang PetscErrorCode ierr; 921d1654148SHong Zhang PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 922d1654148SHong Zhang PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 923d1654148SHong Zhang int fd; 924d1654148SHong Zhang PetscScalar *column_values; 925d1654148SHong Zhang FILE *file; 926d1654148SHong Zhang PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 927d1654148SHong Zhang PetscInt message_count,flowcontrolcount; 928d1654148SHong Zhang 929d1654148SHong Zhang PetscFunctionBegin; 930d1654148SHong Zhang ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 931d1654148SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 932d1654148SHong Zhang nz = bs2*(A->nz + B->nz); 933d1654148SHong Zhang rlen = mat->rmap->n; 934d1654148SHong Zhang ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 935d1654148SHong Zhang if (!rank) { 936d1654148SHong Zhang header[0] = MAT_FILE_CLASSID; 937d1654148SHong Zhang header[1] = mat->rmap->N; 938d1654148SHong Zhang header[2] = mat->cmap->N; 939d1654148SHong Zhang 940d1654148SHong Zhang ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 941d1654148SHong Zhang ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 942d1654148SHong Zhang /* get largest number of rows any processor has */ 943d1654148SHong Zhang range = mat->rmap->range; 944d1654148SHong Zhang for (i=1; i<size; i++) { 945d1654148SHong Zhang rlen = PetscMax(rlen,range[i+1] - range[i]); 946d1654148SHong Zhang } 947d1654148SHong Zhang } else { 948d1654148SHong Zhang ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 949d1654148SHong Zhang } 950d1654148SHong Zhang 951d1654148SHong Zhang ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr); 952d1654148SHong Zhang /* compute lengths of each row */ 953d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 954d1654148SHong Zhang crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 955d1654148SHong Zhang } 956d1654148SHong Zhang /* store the row lengths to the file */ 957d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 958d1654148SHong Zhang if (!rank) { 959d1654148SHong Zhang MPI_Status status; 960d1654148SHong Zhang ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 961d1654148SHong Zhang rlen = (range[1] - range[0])/bs; 962d1654148SHong Zhang for (i=0; i<rlen; i++) { 963d1654148SHong Zhang for (j=0; j<bs; j++) { 964d1654148SHong Zhang row_lens[i*bs+j] = bs*crow_lens[i]; 965d1654148SHong Zhang } 966d1654148SHong Zhang } 967d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 968d1654148SHong Zhang for (i=1; i<size; i++) { 969d1654148SHong Zhang rlen = (range[i+1] - range[i])/bs; 970d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 971d1654148SHong Zhang ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 972d1654148SHong Zhang for (k=0; k<rlen; k++) { 973d1654148SHong Zhang for (j=0; j<bs; j++) { 974d1654148SHong Zhang row_lens[k*bs+j] = bs*crow_lens[k]; 975d1654148SHong Zhang } 976d1654148SHong Zhang } 977d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 978d1654148SHong Zhang } 979d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 980d1654148SHong Zhang ierr = PetscFree(row_lens);CHKERRQ(ierr); 981d1654148SHong Zhang } else { 982d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 983d1654148SHong Zhang ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 984d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 985d1654148SHong Zhang } 986d1654148SHong Zhang ierr = PetscFree(crow_lens);CHKERRQ(ierr); 987d1654148SHong Zhang 988d1654148SHong Zhang /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 989d1654148SHong Zhang information needed to make it for each row from a block row. This does require more communication but still not more than 990d1654148SHong Zhang the communication needed for the nonzero values */ 991d1654148SHong Zhang nzmax = nz; /* space a largest processor needs */ 992d1654148SHong Zhang ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 993d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 994d1654148SHong Zhang cnt = 0; 995d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 996d1654148SHong Zhang pcnt = cnt; 997d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 998d1654148SHong Zhang if ((col = garray[B->j[j]]) > cstart) break; 999d1654148SHong Zhang for (l=0; l<bs; l++) { 1000d1654148SHong Zhang column_indices[cnt++] = bs*col+l; 1001d1654148SHong Zhang } 1002d1654148SHong Zhang } 1003d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1004d1654148SHong Zhang for (l=0; l<bs; l++) { 1005d1654148SHong Zhang column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1006d1654148SHong Zhang } 1007d1654148SHong Zhang } 1008d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1009d1654148SHong Zhang for (l=0; l<bs; l++) { 1010d1654148SHong Zhang column_indices[cnt++] = bs*garray[B->j[j]]+l; 1011d1654148SHong Zhang } 1012d1654148SHong Zhang } 1013d1654148SHong Zhang len = cnt - pcnt; 1014d1654148SHong Zhang for (k=1; k<bs; k++) { 1015d1654148SHong Zhang ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1016d1654148SHong Zhang cnt += len; 1017d1654148SHong Zhang } 1018d1654148SHong Zhang } 1019d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1020d1654148SHong Zhang 1021d1654148SHong Zhang /* store the columns to the file */ 1022d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1023d1654148SHong Zhang if (!rank) { 1024d1654148SHong Zhang MPI_Status status; 1025d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1026d1654148SHong Zhang for (i=1; i<size; i++) { 1027d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1028d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1029d1654148SHong Zhang ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1030d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1031d1654148SHong Zhang } 1032d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1033d1654148SHong Zhang } else { 1034d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1035d1654148SHong Zhang ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1036d1654148SHong Zhang ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1037d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1038d1654148SHong Zhang } 1039d1654148SHong Zhang ierr = PetscFree(column_indices);CHKERRQ(ierr); 1040d1654148SHong Zhang 1041d1654148SHong Zhang /* load up the numerical values */ 1042d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1043d1654148SHong Zhang cnt = 0; 1044d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1045d1654148SHong Zhang rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1046d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1047d1654148SHong Zhang if (garray[B->j[j]] > cstart) break; 1048d1654148SHong Zhang for (l=0; l<bs; l++) { 1049d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1050d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1051d1654148SHong Zhang } 1052d1654148SHong Zhang } 1053d1654148SHong Zhang cnt += bs; 1054d1654148SHong Zhang } 1055d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1056d1654148SHong Zhang for (l=0; l<bs; l++) { 1057d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1058d1654148SHong Zhang column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1059d1654148SHong Zhang } 1060d1654148SHong Zhang } 1061d1654148SHong Zhang cnt += bs; 1062d1654148SHong Zhang } 1063d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1064d1654148SHong Zhang for (l=0; l<bs; l++) { 1065d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1066d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1067d1654148SHong Zhang } 1068d1654148SHong Zhang } 1069d1654148SHong Zhang cnt += bs; 1070d1654148SHong Zhang } 1071d1654148SHong Zhang cnt += (bs-1)*rlen; 1072d1654148SHong Zhang } 1073d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1074d1654148SHong Zhang 1075d1654148SHong Zhang /* store the column values to the file */ 1076d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1077d1654148SHong Zhang if (!rank) { 1078d1654148SHong Zhang MPI_Status status; 1079d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1080d1654148SHong Zhang for (i=1; i<size; i++) { 1081d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1082d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1083d1654148SHong Zhang ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1084d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1085d1654148SHong Zhang } 1086d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1087d1654148SHong Zhang } else { 1088d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1089d1654148SHong Zhang ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1090d1654148SHong Zhang ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1091d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1092d1654148SHong Zhang } 1093d1654148SHong Zhang ierr = PetscFree(column_values);CHKERRQ(ierr); 1094d1654148SHong Zhang 1095d1654148SHong Zhang ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1096d1654148SHong Zhang if (file) { 1097d1654148SHong Zhang fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1098d1654148SHong Zhang } 1099d1654148SHong Zhang PetscFunctionReturn(0); 1100d1654148SHong Zhang } 1101d1654148SHong Zhang 1102d1654148SHong Zhang #undef __FUNCT__ 11034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 1104dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 1105a30f8f8cSSatish Balay { 1106dfbe8321SBarry Smith PetscErrorCode ierr; 1107ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 1108a30f8f8cSSatish Balay 1109a30f8f8cSSatish Balay PetscFunctionBegin; 1110251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1111251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1112251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1113251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1114d1654148SHong Zhang if (iascii || isdraw || issocket) { 1115a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1116d1654148SHong Zhang } else if (isbinary) { 1117d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1118a30f8f8cSSatish Balay } 1119a30f8f8cSSatish Balay PetscFunctionReturn(0); 1120a30f8f8cSSatish Balay } 1121a30f8f8cSSatish Balay 11224a2ae208SSatish Balay #undef __FUNCT__ 11234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 1124dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1125a30f8f8cSSatish Balay { 1126a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1127dfbe8321SBarry Smith PetscErrorCode ierr; 1128a30f8f8cSSatish Balay 1129a30f8f8cSSatish Balay PetscFunctionBegin; 1130a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1131d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1132a30f8f8cSSatish Balay #endif 1133a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1134a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 11356bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 11366bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 11386bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay #else 114005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1141a30f8f8cSSatish Balay #endif 114205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 11436bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 11446bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 11456bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 11466bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 11476bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 11486bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 11496bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 11506bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 11515755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 115205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 115305b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 11546bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 11556bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 11566bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1157ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 115805b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1159a30f8f8cSSatish Balay #endif 116059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 116159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1162899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1163bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1164901853e0SKris Buschelman 1165dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1166bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1167bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1168bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1169bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 11706214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 11716214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 11726214f412SHong Zhang #endif 1173a30f8f8cSSatish Balay PetscFunctionReturn(0); 1174a30f8f8cSSatish Balay } 1175a30f8f8cSSatish Balay 11764a2ae208SSatish Balay #undef __FUNCT__ 1177547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 1178547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1179547795f9SHong Zhang { 1180547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1181547795f9SHong Zhang PetscErrorCode ierr; 1182547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 11836de40e93SBarry Smith PetscScalar *from; 11846de40e93SBarry Smith const PetscScalar *x; 1185547795f9SHong Zhang 1186547795f9SHong Zhang PetscFunctionBegin; 1187547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1188e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1189547795f9SHong Zhang 1190547795f9SHong Zhang /* diagonal part */ 1191547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1192547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1193547795f9SHong Zhang 1194547795f9SHong Zhang /* subdiagonal part */ 1195547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1196547795f9SHong Zhang 1197547795f9SHong Zhang /* copy x into the vec slvec0 */ 1198547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 11996de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1200547795f9SHong Zhang 1201547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1202547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 12036de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1204547795f9SHong Zhang 1205547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1206547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1207547795f9SHong Zhang /* supperdiagonal part */ 1208547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1209547795f9SHong Zhang PetscFunctionReturn(0); 1210547795f9SHong Zhang } 1211547795f9SHong Zhang 1212547795f9SHong Zhang #undef __FUNCT__ 1213a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 1214dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1215a9d4b620SHong Zhang { 1216a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1217dfbe8321SBarry Smith PetscErrorCode ierr; 1218d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1219d9ca1df4SBarry Smith PetscScalar *from; 1220d9ca1df4SBarry Smith const PetscScalar *x; 1221a9d4b620SHong Zhang 1222a9d4b620SHong Zhang PetscFunctionBegin; 1223a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1224e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1225a9d4b620SHong Zhang 1226a9d4b620SHong Zhang /* diagonal part */ 1227a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1228fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1229a9d4b620SHong Zhang 1230a9d4b620SHong Zhang /* subdiagonal part */ 1231a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1232fc165ae2SBarry Smith 1233a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12341ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1235d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1236a9d4b620SHong Zhang 1237fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1238fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1239d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1240fc165ae2SBarry Smith 1241fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1242ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1243a9d4b620SHong Zhang /* supperdiagonal part */ 1244a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1245a9d4b620SHong Zhang PetscFunctionReturn(0); 1246a9d4b620SHong Zhang } 1247a9d4b620SHong Zhang 1248a9d4b620SHong Zhang #undef __FUNCT__ 124940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1250dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1251a30f8f8cSSatish Balay { 1252a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1253dfbe8321SBarry Smith PetscErrorCode ierr; 12541302d50aSBarry Smith PetscInt nt; 1255a30f8f8cSSatish Balay 1256a30f8f8cSSatish Balay PetscFunctionBegin; 1257a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1258e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1259e7e72b3dSBarry Smith 1260a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1261e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 126265d70643SHong Zhang 1263ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1264b941877fSHong Zhang /* do diagonal part */ 1265b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1266b941877fSHong Zhang /* do supperdiagonal part */ 1267ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1268b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1269b941877fSHong Zhang /* do subdiagonal part */ 1270b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1271ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1272ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1273a30f8f8cSSatish Balay PetscFunctionReturn(0); 1274a30f8f8cSSatish Balay } 1275a30f8f8cSSatish Balay 12764a2ae208SSatish Balay #undef __FUNCT__ 12774a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1278dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1279a30f8f8cSSatish Balay { 1280de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1281dfbe8321SBarry Smith PetscErrorCode ierr; 1282d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1283d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1284d9ca1df4SBarry Smith const PetscScalar *x; 1285a9d4b620SHong Zhang 1286a9d4b620SHong Zhang PetscFunctionBegin; 1287a9d4b620SHong Zhang /* 1288ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 12890ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1290a9d4b620SHong Zhang */ 1291a9d4b620SHong Zhang /* diagonal part */ 1292a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 12932dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1294a9d4b620SHong Zhang 1295a9d4b620SHong Zhang /* subdiagonal part */ 1296a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1297a9d4b620SHong Zhang 1298a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12991ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1300d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1301a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 13021ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1303a9d4b620SHong Zhang 1304ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1305d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1306ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1307a9d4b620SHong Zhang 1308a9d4b620SHong Zhang /* supperdiagonal part */ 1309a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1310a9d4b620SHong Zhang PetscFunctionReturn(0); 1311a9d4b620SHong Zhang } 1312a9d4b620SHong Zhang 1313a9d4b620SHong Zhang #undef __FUNCT__ 1314a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1315dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1316a9d4b620SHong Zhang { 1317a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1318dfbe8321SBarry Smith PetscErrorCode ierr; 1319a30f8f8cSSatish Balay 1320a30f8f8cSSatish Balay PetscFunctionBegin; 1321ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1322b941877fSHong Zhang /* do diagonal part */ 1323b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1324b941877fSHong Zhang /* do supperdiagonal part */ 1325ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1326de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1327de8b6608SHong Zhang 1328b941877fSHong Zhang /* do subdiagonal part */ 1329a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1330ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1331ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1332a30f8f8cSSatish Balay PetscFunctionReturn(0); 1333a30f8f8cSSatish Balay } 1334a30f8f8cSSatish Balay 1335a30f8f8cSSatish Balay /* 1336a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1337a30f8f8cSSatish Balay diagonal block 1338a30f8f8cSSatish Balay */ 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1341dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1342a30f8f8cSSatish Balay { 1343a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1344dfbe8321SBarry Smith PetscErrorCode ierr; 1345a30f8f8cSSatish Balay 1346a30f8f8cSSatish Balay PetscFunctionBegin; 1347e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1348a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1349a30f8f8cSSatish Balay PetscFunctionReturn(0); 1350a30f8f8cSSatish Balay } 1351a30f8f8cSSatish Balay 13524a2ae208SSatish Balay #undef __FUNCT__ 13534a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1354f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1355a30f8f8cSSatish Balay { 1356a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1357dfbe8321SBarry Smith PetscErrorCode ierr; 1358a30f8f8cSSatish Balay 1359a30f8f8cSSatish Balay PetscFunctionBegin; 1360f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1361f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay PetscFunctionReturn(0); 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay 13654a2ae208SSatish Balay #undef __FUNCT__ 13664a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 13671302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1368a30f8f8cSSatish Balay { 1369d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1370d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1371d0d4cfc2SHong Zhang PetscErrorCode ierr; 1372d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1373d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1374899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1375d0d4cfc2SHong Zhang 1376a30f8f8cSSatish Balay PetscFunctionBegin; 1377e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1378d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1379d0d4cfc2SHong Zhang 1380d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1381d0d4cfc2SHong Zhang /* 1382d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1383d0d4cfc2SHong Zhang */ 1384d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1385d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1386d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1387d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1388d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 138926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1390d0d4cfc2SHong Zhang } 1391dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1392d0d4cfc2SHong Zhang } 1393d0d4cfc2SHong Zhang 1394e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1395d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1396d0d4cfc2SHong Zhang 1397d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1398d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1399d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1400d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1401d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1402d0d4cfc2SHong Zhang nztot = nzA + nzB; 1403d0d4cfc2SHong Zhang 1404d0d4cfc2SHong Zhang cmap = mat->garray; 1405d0d4cfc2SHong Zhang if (v || idx) { 1406d0d4cfc2SHong Zhang if (nztot) { 1407d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1408d0d4cfc2SHong Zhang PetscInt imark = -1; 1409d0d4cfc2SHong Zhang if (v) { 1410d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1411d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1412d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1413d0d4cfc2SHong Zhang else break; 1414d0d4cfc2SHong Zhang } 1415d0d4cfc2SHong Zhang imark = i; 1416d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1417d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1418d0d4cfc2SHong Zhang } 1419d0d4cfc2SHong Zhang if (idx) { 1420d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1421d0d4cfc2SHong Zhang if (imark > -1) { 1422d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1423d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1424d0d4cfc2SHong Zhang } 1425d0d4cfc2SHong Zhang } else { 1426d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 142726fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1428d0d4cfc2SHong Zhang else break; 1429d0d4cfc2SHong Zhang } 1430d0d4cfc2SHong Zhang imark = i; 1431d0d4cfc2SHong Zhang } 1432d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1433d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1434d0d4cfc2SHong Zhang } 1435d0d4cfc2SHong Zhang } else { 1436d0d4cfc2SHong Zhang if (idx) *idx = 0; 1437d0d4cfc2SHong Zhang if (v) *v = 0; 1438d0d4cfc2SHong Zhang } 1439d0d4cfc2SHong Zhang } 1440d0d4cfc2SHong Zhang *nz = nztot; 1441d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1442d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1443a30f8f8cSSatish Balay PetscFunctionReturn(0); 1444a30f8f8cSSatish Balay } 1445a30f8f8cSSatish Balay 14464a2ae208SSatish Balay #undef __FUNCT__ 14474a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 14481302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1449a30f8f8cSSatish Balay { 1450a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1451a30f8f8cSSatish Balay 1452a30f8f8cSSatish Balay PetscFunctionBegin; 1453e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1454a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1455a30f8f8cSSatish Balay PetscFunctionReturn(0); 1456a30f8f8cSSatish Balay } 1457a30f8f8cSSatish Balay 14584a2ae208SSatish Balay #undef __FUNCT__ 1459d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1460d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1461d0d4cfc2SHong Zhang { 1462d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1463d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1464d0d4cfc2SHong Zhang 1465d0d4cfc2SHong Zhang PetscFunctionBegin; 1466d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1467d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1468d0d4cfc2SHong Zhang } 1469d0d4cfc2SHong Zhang #undef __FUNCT__ 1470d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1471d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1472d0d4cfc2SHong Zhang { 1473d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1474d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1475d0d4cfc2SHong Zhang 1476d0d4cfc2SHong Zhang PetscFunctionBegin; 1477d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1478d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1479d0d4cfc2SHong Zhang } 1480d0d4cfc2SHong Zhang 1481d0d4cfc2SHong Zhang #undef __FUNCT__ 148299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 148399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 148499cafbc1SBarry Smith { 148599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 148699cafbc1SBarry Smith PetscErrorCode ierr; 148799cafbc1SBarry Smith 148899cafbc1SBarry Smith PetscFunctionBegin; 148999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 149099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 149199cafbc1SBarry Smith PetscFunctionReturn(0); 149299cafbc1SBarry Smith } 149399cafbc1SBarry Smith 149499cafbc1SBarry Smith #undef __FUNCT__ 149599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 149699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 149799cafbc1SBarry Smith { 149899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 149999cafbc1SBarry Smith PetscErrorCode ierr; 150099cafbc1SBarry Smith 150199cafbc1SBarry Smith PetscFunctionBegin; 150299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 150399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 150499cafbc1SBarry Smith PetscFunctionReturn(0); 150599cafbc1SBarry Smith } 150699cafbc1SBarry Smith 150736032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 150836032a97SHong Zhang Input: isrow - distributed(parallel), 150936032a97SHong Zhang iscol_local - locally owned (seq) 151036032a97SHong Zhang */ 151199cafbc1SBarry Smith #undef __FUNCT__ 151236032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 151336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 15148f46ffcaSHong Zhang { 15158f46ffcaSHong Zhang PetscErrorCode ierr; 15168f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 15178f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 151836032a97SHong Zhang 151936032a97SHong Zhang PetscFunctionBegin; 15208f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 15218f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 15221098a8e8SHong Zhang if (sz1 > sz2) { 15231098a8e8SHong Zhang *flg = PETSC_FALSE; 15241098a8e8SHong Zhang PetscFunctionReturn(0); 15251098a8e8SHong Zhang } 15268f46ffcaSHong Zhang 15278f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 15288f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15298f46ffcaSHong Zhang 15308f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 15318f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 15328f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 15338f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 15348f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 15358f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 15368f46ffcaSHong Zhang 15378f46ffcaSHong Zhang nmatch=0; 15388f46ffcaSHong Zhang k = 0; 15398f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 15408f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 15418f46ffcaSHong Zhang if (a1[i] == a2[j]) { 15428f46ffcaSHong Zhang k = j; nmatch++; 15438f46ffcaSHong Zhang break; 15448f46ffcaSHong Zhang } 15458f46ffcaSHong Zhang } 15468f46ffcaSHong Zhang } 15478f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 15488f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15498f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 15508f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 15511098a8e8SHong Zhang if (nmatch < sz1) { 15521098a8e8SHong Zhang *flg = PETSC_FALSE; 15531098a8e8SHong Zhang } else { 15541098a8e8SHong Zhang *flg = PETSC_TRUE; 15551098a8e8SHong Zhang } 155636032a97SHong Zhang PetscFunctionReturn(0); 15578f46ffcaSHong Zhang } 155836032a97SHong Zhang 155936032a97SHong Zhang #undef __FUNCT__ 156036032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 156136032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 156236032a97SHong Zhang { 156336032a97SHong Zhang PetscErrorCode ierr; 156436032a97SHong Zhang IS iscol_local; 156536032a97SHong Zhang PetscInt csize; 156636032a97SHong Zhang PetscBool isequal; 156736032a97SHong Zhang 156836032a97SHong Zhang PetscFunctionBegin; 156936032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 157036032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 157136032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 157236032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 157336032a97SHong Zhang } else { 157436032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 157536032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 157636032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 15778f46ffcaSHong Zhang } 15788f46ffcaSHong Zhang 15798f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 158036032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 15818f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 15828f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 15838f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 15848f46ffcaSHong Zhang } 15858f46ffcaSHong Zhang PetscFunctionReturn(0); 15868f46ffcaSHong Zhang } 15878f46ffcaSHong Zhang 15888f46ffcaSHong Zhang #undef __FUNCT__ 15894a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1590dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1591a30f8f8cSSatish Balay { 1592a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1593dfbe8321SBarry Smith PetscErrorCode ierr; 1594a30f8f8cSSatish Balay 1595a30f8f8cSSatish Balay PetscFunctionBegin; 1596a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1597a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1598a30f8f8cSSatish Balay PetscFunctionReturn(0); 1599a30f8f8cSSatish Balay } 1600a30f8f8cSSatish Balay 16014a2ae208SSatish Balay #undef __FUNCT__ 16024a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1603dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1604a30f8f8cSSatish Balay { 1605a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1606a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1607dfbe8321SBarry Smith PetscErrorCode ierr; 1608a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1609a30f8f8cSSatish Balay 1610a30f8f8cSSatish Balay PetscFunctionBegin; 1611d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 161226fbe8dcSKarl Rupp 1613a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 161426fbe8dcSKarl Rupp 1615a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1616a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 161726fbe8dcSKarl Rupp 1618a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 161926fbe8dcSKarl Rupp 1620a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1621a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1622a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1623a30f8f8cSSatish Balay info->nz_used = isend[0]; 1624a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1625a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1626a30f8f8cSSatish Balay info->memory = isend[3]; 1627a30f8f8cSSatish Balay info->mallocs = isend[4]; 1628a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1629b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 163026fbe8dcSKarl Rupp 1631a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1632a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1633a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1634a30f8f8cSSatish Balay info->memory = irecv[3]; 1635a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1636a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1637b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 163826fbe8dcSKarl Rupp 1639a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1640a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1641a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1642a30f8f8cSSatish Balay info->memory = irecv[3]; 1643a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1644f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1645a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1646a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1647a30f8f8cSSatish Balay info->factor_mallocs = 0; 1648a30f8f8cSSatish Balay PetscFunctionReturn(0); 1649a30f8f8cSSatish Balay } 1650a30f8f8cSSatish Balay 16514a2ae208SSatish Balay #undef __FUNCT__ 16524a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1653ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1654a30f8f8cSSatish Balay { 1655a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1656d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1657dfbe8321SBarry Smith PetscErrorCode ierr; 1658a30f8f8cSSatish Balay 1659a30f8f8cSSatish Balay PetscFunctionBegin; 1660e98b92d7SKris Buschelman switch (op) { 1661512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1662e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 166328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1664a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1665e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 166643674050SBarry Smith MatCheckPreallocated(A,1); 16674e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16684e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1669e98b92d7SKris Buschelman break; 1670e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 167143674050SBarry Smith MatCheckPreallocated(A,1); 16724e0d8c25SBarry Smith a->roworiented = flg; 167326fbe8dcSKarl Rupp 16744e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16754e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1676e98b92d7SKris Buschelman break; 16774e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1678290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1679e98b92d7SKris Buschelman break; 1680e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16814e0d8c25SBarry Smith a->donotstash = flg; 1682e98b92d7SKris Buschelman break; 1683e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 16844e0d8c25SBarry Smith a->ht_flag = flg; 1685e98b92d7SKris Buschelman break; 16869a4540c5SBarry Smith case MAT_HERMITIAN: 168743674050SBarry Smith MatCheckPreallocated(A,1); 1688e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1689eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 169026fbe8dcSKarl Rupp 1691547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1692eeffb40dSHong Zhang break; 1693ffa07934SHong Zhang case MAT_SPD: 1694ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1695ffa07934SHong Zhang A->spd = flg; 1696ffa07934SHong Zhang if (flg) { 1697ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1698ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1699ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1700ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1701ffa07934SHong Zhang } 1702ffa07934SHong Zhang break; 170377e54ba9SKris Buschelman case MAT_SYMMETRIC: 170443674050SBarry Smith MatCheckPreallocated(A,1); 1705eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1706eeffb40dSHong Zhang break; 170777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 170843674050SBarry Smith MatCheckPreallocated(A,1); 1709eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1710eeffb40dSHong Zhang break; 17119a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1712e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1713290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 171477e54ba9SKris Buschelman break; 1715d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 17164e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1717d0d4cfc2SHong Zhang break; 1718d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 17194e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1720d0d4cfc2SHong Zhang break; 1721d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 17224e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1723d0d4cfc2SHong Zhang break; 1724e98b92d7SKris Buschelman default: 1725e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1726a30f8f8cSSatish Balay } 1727a30f8f8cSSatish Balay PetscFunctionReturn(0); 1728a30f8f8cSSatish Balay } 1729a30f8f8cSSatish Balay 17304a2ae208SSatish Balay #undef __FUNCT__ 17318115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1732fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1733a30f8f8cSSatish Balay { 1734dfbe8321SBarry Smith PetscErrorCode ierr; 17356e111a19SKarl Rupp 1736a30f8f8cSSatish Balay PetscFunctionBegin; 1737815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1738999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1739fc4dec0aSBarry Smith } 17408115998fSBarry Smith PetscFunctionReturn(0); 1741a30f8f8cSSatish Balay } 1742a30f8f8cSSatish Balay 17434a2ae208SSatish Balay #undef __FUNCT__ 17444a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1745dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1746a30f8f8cSSatish Balay { 1747a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1748a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1749dfbe8321SBarry Smith PetscErrorCode ierr; 17505e90f9d9SHong Zhang PetscInt nv,m,n; 1751ace3abfcSBarry Smith PetscBool flg; 1752a30f8f8cSSatish Balay 1753a30f8f8cSSatish Balay PetscFunctionBegin; 1754a30f8f8cSSatish Balay if (ll != rr) { 1755b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1756e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1757a30f8f8cSSatish Balay } 1758b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1759b3bf805bSHong Zhang 17605e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1761e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1762b3bf805bSHong Zhang 17635e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1764e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 17655e90f9d9SHong Zhang 1766ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17675e90f9d9SHong Zhang 17685e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 17690298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 17705e90f9d9SHong Zhang 17715e90f9d9SHong Zhang /* scale the diagonal part */ 1772a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1773a30f8f8cSSatish Balay 17745e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1775ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17760298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1777a30f8f8cSSatish Balay PetscFunctionReturn(0); 1778a30f8f8cSSatish Balay } 1779a30f8f8cSSatish Balay 17804a2ae208SSatish Balay #undef __FUNCT__ 17814a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1782dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1783a30f8f8cSSatish Balay { 1784f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1785dfbe8321SBarry Smith PetscErrorCode ierr; 1786a30f8f8cSSatish Balay 1787a30f8f8cSSatish Balay PetscFunctionBegin; 1788a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1789a30f8f8cSSatish Balay PetscFunctionReturn(0); 1790a30f8f8cSSatish Balay } 1791a30f8f8cSSatish Balay 17926849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1793a30f8f8cSSatish Balay 17944a2ae208SSatish Balay #undef __FUNCT__ 17954a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1796ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1797a30f8f8cSSatish Balay { 1798a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1799a30f8f8cSSatish Balay Mat a,b,c,d; 1800ace3abfcSBarry Smith PetscBool flg; 1801dfbe8321SBarry Smith PetscErrorCode ierr; 1802a30f8f8cSSatish Balay 1803a30f8f8cSSatish Balay PetscFunctionBegin; 1804a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1805a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1806a30f8f8cSSatish Balay 1807a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1808abc0a331SBarry Smith if (flg) { 1809a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1810a30f8f8cSSatish Balay } 1811b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1812a30f8f8cSSatish Balay PetscFunctionReturn(0); 1813a30f8f8cSSatish Balay } 1814a30f8f8cSSatish Balay 18154a2ae208SSatish Balay #undef __FUNCT__ 18163c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 18173c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 18183c896bc6SHong Zhang { 18193c896bc6SHong Zhang PetscErrorCode ierr; 18203c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 18213c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 18223c896bc6SHong Zhang 18233c896bc6SHong Zhang PetscFunctionBegin; 18243c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18253c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1826d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 18273c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1828d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 18293c896bc6SHong Zhang } else { 18303c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18313c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18323c896bc6SHong Zhang } 18333c896bc6SHong Zhang PetscFunctionReturn(0); 18343c896bc6SHong Zhang } 18353c896bc6SHong Zhang 18363c896bc6SHong Zhang #undef __FUNCT__ 18374994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 18384994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1839273d9f13SBarry Smith { 1840dfbe8321SBarry Smith PetscErrorCode ierr; 1841273d9f13SBarry Smith 1842273d9f13SBarry Smith PetscFunctionBegin; 1843535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1844273d9f13SBarry Smith PetscFunctionReturn(0); 1845273d9f13SBarry Smith } 1846a5e6ed63SBarry Smith 18474fe895cdSHong Zhang #undef __FUNCT__ 18484fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 18494fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18504fe895cdSHong Zhang { 18514fe895cdSHong Zhang PetscErrorCode ierr; 18524fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 18534fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18544fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 18554fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 18564fe895cdSHong Zhang 18574fe895cdSHong Zhang PetscFunctionBegin; 18584fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18594fe895cdSHong Zhang PetscScalar alpha = a; 18604fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 18614fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1862c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 18638b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 18644fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 18654fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1866c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 18678b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1868a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1869ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1870ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1871ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1872ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 18734fe895cdSHong Zhang } else { 18744de5dceeSHong Zhang Mat B; 18754de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18764de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1877d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 18784de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 18794de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 18804de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 18814de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 18824de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 18834de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 18844de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 18854de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 18864de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 18874de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 18884de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 18894de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 189028be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 18914de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 18924de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1893d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 18944de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 18954fe895cdSHong Zhang } 18964fe895cdSHong Zhang PetscFunctionReturn(0); 18974fe895cdSHong Zhang } 18984fe895cdSHong Zhang 1899a5e6ed63SBarry Smith #undef __FUNCT__ 1900a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 19011302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1902a5e6ed63SBarry Smith { 19036849ba73SBarry Smith PetscErrorCode ierr; 19041302d50aSBarry Smith PetscInt i; 1905afebec48SHong Zhang PetscBool flg; 1906a5e6ed63SBarry Smith 19076849ba73SBarry Smith PetscFunctionBegin; 1908afebec48SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1909a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1910a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1911afebec48SHong Zhang if (!flg) { 1912b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1913a5e6ed63SBarry Smith } 19144dcd73b1SHong Zhang } 1915a5e6ed63SBarry Smith PetscFunctionReturn(0); 1916a5e6ed63SBarry Smith } 1917a5e6ed63SBarry Smith 19187d68702bSBarry Smith #undef __FUNCT__ 19197d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ" 19207d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 19217d68702bSBarry Smith { 19227d68702bSBarry Smith PetscErrorCode ierr; 19237d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 19246f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 19257d68702bSBarry Smith 19267d68702bSBarry Smith PetscFunctionBegin; 19276f33a894SBarry Smith if (!Y->preallocated) { 19287d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 19296f33a894SBarry Smith } else if (!aij->nz) { 1930b83222d8SBarry Smith PetscInt nonew = aij->nonew; 19316f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1932b83222d8SBarry Smith aij->nonew = nonew; 19337d68702bSBarry Smith } 19347d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 19357d68702bSBarry Smith PetscFunctionReturn(0); 19367d68702bSBarry Smith } 19377d68702bSBarry Smith 19383b49f96aSBarry Smith #undef __FUNCT__ 19393b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ" 19403b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 19413b49f96aSBarry Smith { 19423b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 19433b49f96aSBarry Smith PetscErrorCode ierr; 19443b49f96aSBarry Smith 19453b49f96aSBarry Smith PetscFunctionBegin; 19463b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 19473b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 19483b49f96aSBarry Smith if (d) { 19493b49f96aSBarry Smith PetscInt rstart; 19503b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 19513b49f96aSBarry Smith *d += rstart/A->rmap->bs; 19523b49f96aSBarry Smith 19533b49f96aSBarry Smith } 19543b49f96aSBarry Smith PetscFunctionReturn(0); 19553b49f96aSBarry Smith } 19563b49f96aSBarry Smith 1957a5b7ff6bSBarry Smith #undef __FUNCT__ 1958a5b7ff6bSBarry Smith #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1959a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1960a5b7ff6bSBarry Smith { 1961a5b7ff6bSBarry Smith PetscFunctionBegin; 1962a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1963a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1964a5b7ff6bSBarry Smith } 19653b49f96aSBarry Smith 1966a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 19673964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1968a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1969a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1970a9d4b620SHong Zhang MatMult_MPISBAIJ, 197197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1972431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1973431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1974a30f8f8cSSatish Balay 0, 1975a30f8f8cSSatish Balay 0, 1976a30f8f8cSSatish Balay 0, 197797304618SKris Buschelman /* 10*/ 0, 1978a30f8f8cSSatish Balay 0, 1979a30f8f8cSSatish Balay 0, 198041f059aeSBarry Smith MatSOR_MPISBAIJ, 1981a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 198297304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1983a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1984a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1985a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1986a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 198797304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1988a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1989a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1990a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1991d519adbfSMatthew Knepley /* 24*/ 0, 1992a30f8f8cSSatish Balay 0, 1993a30f8f8cSSatish Balay 0, 1994a30f8f8cSSatish Balay 0, 1995a30f8f8cSSatish Balay 0, 19964994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1997b5df2d14SHong Zhang 0, 1998a30f8f8cSSatish Balay 0, 1999a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 2000a30f8f8cSSatish Balay 0, 2001d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 2002a30f8f8cSSatish Balay 0, 2003a30f8f8cSSatish Balay 0, 2004a30f8f8cSSatish Balay 0, 2005a30f8f8cSSatish Balay 0, 2006d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 2007a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 2008d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 2009a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 20103c896bc6SHong Zhang MatCopy_MPISBAIJ, 2011d519adbfSMatthew Knepley /* 44*/ 0, 2012a30f8f8cSSatish Balay MatScale_MPISBAIJ, 20137d68702bSBarry Smith MatShift_MPISBAIJ, 2014a30f8f8cSSatish Balay 0, 2015a30f8f8cSSatish Balay 0, 2016f73d5cc4SBarry Smith /* 49*/ 0, 2017a30f8f8cSSatish Balay 0, 2018a30f8f8cSSatish Balay 0, 2019a30f8f8cSSatish Balay 0, 2020a30f8f8cSSatish Balay 0, 2021d519adbfSMatthew Knepley /* 54*/ 0, 2022a30f8f8cSSatish Balay 0, 2023a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 2024a30f8f8cSSatish Balay 0, 2025a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 20268f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 2027a30f8f8cSSatish Balay 0, 2028a30f8f8cSSatish Balay 0, 2029357abbc8SBarry Smith 0, 203024d5174aSHong Zhang 0, 2031d519adbfSMatthew Knepley /* 64*/ 0, 203224d5174aSHong Zhang 0, 203324d5174aSHong Zhang 0, 203424d5174aSHong Zhang 0, 203524d5174aSHong Zhang 0, 2036d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 203724d5174aSHong Zhang 0, 203897304618SKris Buschelman 0, 203997304618SKris Buschelman 0, 204097304618SKris Buschelman 0, 2041d519adbfSMatthew Knepley /* 74*/ 0, 204297304618SKris Buschelman 0, 204397304618SKris Buschelman 0, 204497304618SKris Buschelman 0, 204597304618SKris Buschelman 0, 2046d519adbfSMatthew Knepley /* 79*/ 0, 204797304618SKris Buschelman 0, 204897304618SKris Buschelman 0, 204997304618SKris Buschelman 0, 20505bba2384SShri Abhyankar MatLoad_MPISBAIJ, 2051d519adbfSMatthew Knepley /* 84*/ 0, 2052865e5f61SKris Buschelman 0, 2053865e5f61SKris Buschelman 0, 2054865e5f61SKris Buschelman 0, 2055865e5f61SKris Buschelman 0, 2056d519adbfSMatthew Knepley /* 89*/ 0, 2057865e5f61SKris Buschelman 0, 2058865e5f61SKris Buschelman 0, 2059865e5f61SKris Buschelman 0, 2060865e5f61SKris Buschelman 0, 2061d519adbfSMatthew Knepley /* 94*/ 0, 2062865e5f61SKris Buschelman 0, 2063865e5f61SKris Buschelman 0, 206499cafbc1SBarry Smith 0, 206599cafbc1SBarry Smith 0, 2066d519adbfSMatthew Knepley /* 99*/ 0, 206799cafbc1SBarry Smith 0, 206899cafbc1SBarry Smith 0, 206999cafbc1SBarry Smith 0, 207099cafbc1SBarry Smith 0, 2071d519adbfSMatthew Knepley /*104*/ 0, 207299cafbc1SBarry Smith MatRealPart_MPISBAIJ, 2073d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 2074d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 207595936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 207695936485SShri Abhyankar /*109*/ 0, 207795936485SShri Abhyankar 0, 207895936485SShri Abhyankar 0, 207995936485SShri Abhyankar 0, 20803b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 208195936485SShri Abhyankar /*114*/ 0, 208295936485SShri Abhyankar 0, 208395936485SShri Abhyankar 0, 208495936485SShri Abhyankar 0, 208595936485SShri Abhyankar 0, 208695936485SShri Abhyankar /*119*/ 0, 208795936485SShri Abhyankar 0, 208895936485SShri Abhyankar 0, 20893964eb88SJed Brown 0, 20903964eb88SJed Brown 0, 20913964eb88SJed Brown /*124*/ 0, 20923964eb88SJed Brown 0, 20933964eb88SJed Brown 0, 20943964eb88SJed Brown 0, 20953964eb88SJed Brown 0, 20963964eb88SJed Brown /*129*/ 0, 20973964eb88SJed Brown 0, 20983964eb88SJed Brown 0, 20993964eb88SJed Brown 0, 21003964eb88SJed Brown 0, 21013964eb88SJed Brown /*134*/ 0, 21023964eb88SJed Brown 0, 21033964eb88SJed Brown 0, 21043964eb88SJed Brown 0, 21053964eb88SJed Brown 0, 21063964eb88SJed Brown /*139*/ 0, 2107f9426fe0SMark Adams 0, 210859f5e6ceSHong Zhang 0, 210959f5e6ceSHong Zhang 0, 211059f5e6ceSHong Zhang 0, 211159f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 211299cafbc1SBarry Smith }; 2113a30f8f8cSSatish Balay 21144a2ae208SSatish Balay #undef __FUNCT__ 2115a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 2116b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2117a23d5eceSKris Buschelman { 2118a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 2119dfbe8321SBarry Smith PetscErrorCode ierr; 2120535b19f3SBarry Smith PetscInt i,mbs,Mbs; 2121a23d5eceSKris Buschelman 2122a23d5eceSKris Buschelman PetscFunctionBegin; 212333d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 212426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 212526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2126e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2127899cda47SBarry Smith 2128a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 2129d0f46423SBarry Smith mbs = B->rmap->n/bs; 2130d0f46423SBarry Smith Mbs = B->rmap->N/bs; 2131c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 2132a23d5eceSKris Buschelman 2133d0f46423SBarry Smith B->rmap->bs = bs; 2134a23d5eceSKris Buschelman b->bs2 = bs*bs; 2135a23d5eceSKris Buschelman b->mbs = mbs; 2136a23d5eceSKris Buschelman b->Mbs = Mbs; 2137de64b629SHong Zhang b->nbs = B->cmap->n/bs; 2138de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 2139a23d5eceSKris Buschelman 2140a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2141d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2142a23d5eceSKris Buschelman } 2143d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2144d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2145a23d5eceSKris Buschelman 2146d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2147d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2148a23d5eceSKris Buschelman 2149*cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2150*cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2151*cb7b82ddSBarry Smith #else 2152*cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2153*cb7b82ddSBarry Smith #endif 2154*cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2155*cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2156*cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2157*cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 2158*cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 2159*cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 2160*cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 2161*cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 2162*cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 2163*cb7b82ddSBarry Smith 2164*cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 2165*cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2166*cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2167*cb7b82ddSBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 2168*cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2169*cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2170*cb7b82ddSBarry Smith 2171526dfc15SBarry Smith if (!B->preallocated) { 2172f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2173d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 21749c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 21753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2176ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2177526dfc15SBarry Smith } 2178a23d5eceSKris Buschelman 2179526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2180526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 218126fbe8dcSKarl Rupp 2182526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2183*cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2184*cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2185a23d5eceSKris Buschelman PetscFunctionReturn(0); 2186a23d5eceSKris Buschelman } 2187a23d5eceSKris Buschelman 2188dfb205c3SBarry Smith #undef __FUNCT__ 2189dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 2190dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2191dfb205c3SBarry Smith { 2192dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 2193dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2194dfb205c3SBarry Smith const PetscInt *JJ =0; 2195dfb205c3SBarry Smith PetscScalar *values=0; 2196dfb205c3SBarry Smith PetscErrorCode ierr; 2197dfb205c3SBarry Smith 2198dfb205c3SBarry Smith PetscFunctionBegin; 2199ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2200dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2201dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2202dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2203dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2204e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2205dfb205c3SBarry Smith m = B->rmap->n/bs; 2206dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2207dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 2208dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2209dfb205c3SBarry Smith 2210dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2211dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2212dfb205c3SBarry Smith for (i=0; i<m; i++) { 2213dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2214dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2215dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 2216dfb205c3SBarry Smith JJ = jj + ii[i]; 2217dfb205c3SBarry Smith for (j=0; j<nz; j++) { 2218dfb205c3SBarry Smith if (*JJ >= cstart) break; 2219dfb205c3SBarry Smith JJ++; 2220dfb205c3SBarry Smith } 2221dfb205c3SBarry Smith d = 0; 2222dfb205c3SBarry Smith for (; j<nz; j++) { 2223dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2224dfb205c3SBarry Smith d++; 2225dfb205c3SBarry Smith } 2226dfb205c3SBarry Smith d_nnz[i] = d; 2227dfb205c3SBarry Smith o_nnz[i] = nz - d; 2228dfb205c3SBarry Smith } 2229dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2230dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2231dfb205c3SBarry Smith 2232dfb205c3SBarry Smith values = (PetscScalar*)V; 2233dfb205c3SBarry Smith if (!values) { 2234785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2235dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2236dfb205c3SBarry Smith } 2237dfb205c3SBarry Smith for (i=0; i<m; i++) { 2238dfb205c3SBarry Smith PetscInt row = i + rstart; 2239dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2240dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2241dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2242dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2243dfb205c3SBarry Smith } 2244dfb205c3SBarry Smith 2245dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2246dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2247dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 22487827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2249dfb205c3SBarry Smith PetscFunctionReturn(0); 2250dfb205c3SBarry Smith } 2251dfb205c3SBarry Smith 22520bad9183SKris Buschelman /*MC 2253fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2254828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2255828413b8SBarry Smith the matrix is stored. 2256828413b8SBarry Smith 2257828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2258828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 22590bad9183SKris Buschelman 22600bad9183SKris Buschelman Options Database Keys: 22610bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 22620bad9183SKris Buschelman 22630bad9183SKris Buschelman Level: beginner 22640bad9183SKris Buschelman 22650bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 22660bad9183SKris Buschelman M*/ 22670bad9183SKris Buschelman 2268cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2269aa5a9175SDahai Guo 2270a23d5eceSKris Buschelman #undef __FUNCT__ 22714a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 22728cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2273b5df2d14SHong Zhang { 2274b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2275dfbe8321SBarry Smith PetscErrorCode ierr; 227694ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2277b5df2d14SHong Zhang 2278b5df2d14SHong Zhang PetscFunctionBegin; 2279b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2280b0a32e0cSBarry Smith B->data = (void*)b; 2281b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2282b5df2d14SHong Zhang 2283b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2284b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2285b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2286b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 228726fbe8dcSKarl Rupp 2288ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2289ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2290b5df2d14SHong Zhang 2291b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2292854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2293b5df2d14SHong Zhang 2294b5df2d14SHong Zhang /* build cache for off array entries formed */ 2295ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 229626fbe8dcSKarl Rupp 2297b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 22980298fd71SBarry Smith b->colmap = NULL; 22990298fd71SBarry Smith b->garray = NULL; 2300b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2301b5df2d14SHong Zhang 2302b5df2d14SHong Zhang /* stuff used in block assembly */ 2303b5df2d14SHong Zhang b->barray = 0; 2304b5df2d14SHong Zhang 2305b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2306b5df2d14SHong Zhang b->lvec = 0; 2307b5df2d14SHong Zhang b->Mvctx = 0; 230840781036SHong Zhang b->slvec0 = 0; 230940781036SHong Zhang b->slvec0b = 0; 231040781036SHong Zhang b->slvec1 = 0; 231140781036SHong Zhang b->slvec1a = 0; 231240781036SHong Zhang b->slvec1b = 0; 231340781036SHong Zhang b->sMvctx = 0; 2314b5df2d14SHong Zhang 2315b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2316b5df2d14SHong Zhang b->rowindices = 0; 2317b5df2d14SHong Zhang b->rowvalues = 0; 2318b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2319b5df2d14SHong Zhang 2320b5df2d14SHong Zhang /* hash table stuff */ 2321b5df2d14SHong Zhang b->ht = 0; 2322b5df2d14SHong Zhang b->hd = 0; 2323b5df2d14SHong Zhang b->ht_size = 0; 2324b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2325b5df2d14SHong Zhang b->ht_fact = 0; 2326b5df2d14SHong Zhang b->ht_total_ct = 0; 2327b5df2d14SHong Zhang b->ht_insert_ct = 0; 2328b5df2d14SHong Zhang 23297a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 23307a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 23317a868f3eSHong Zhang 233259ffdab8SBarry Smith b->in_loc = 0; 233359ffdab8SBarry Smith b->v_loc = 0; 233459ffdab8SBarry Smith b->n_loc = 0; 233594ae4db5SBarry Smith 2336bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2337bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2338bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2339bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 23406214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 23416214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 23426214f412SHong Zhang #endif 2343aa5a9175SDahai Guo 234423ce1328SBarry Smith B->symmetric = PETSC_TRUE; 234523ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 234623ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 234723ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 234826fbe8dcSKarl Rupp 234917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 235094ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 235194ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 235294ae4db5SBarry Smith if (flg) { 235394ae4db5SBarry Smith PetscReal fact = 1.39; 235494ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 235594ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 235694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 235794ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 235894ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 235994ae4db5SBarry Smith } 236094ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2361b5df2d14SHong Zhang PetscFunctionReturn(0); 2362b5df2d14SHong Zhang } 2363b5df2d14SHong Zhang 2364209238afSKris Buschelman /*MC 2365002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2366209238afSKris Buschelman 2367209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2368209238afSKris Buschelman and MATMPISBAIJ otherwise. 2369209238afSKris Buschelman 2370209238afSKris Buschelman Options Database Keys: 2371209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2372209238afSKris Buschelman 2373209238afSKris Buschelman Level: beginner 2374209238afSKris Buschelman 2375209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2376209238afSKris Buschelman M*/ 2377209238afSKris Buschelman 23784a2ae208SSatish Balay #undef __FUNCT__ 23794a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 2380b5df2d14SHong Zhang /*@C 2381b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2382b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2383b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2384b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2385b5df2d14SHong Zhang 2386b5df2d14SHong Zhang Collective on Mat 2387b5df2d14SHong Zhang 2388b5df2d14SHong Zhang Input Parameters: 23891c4f3114SJed Brown + B - the matrix 2390bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2391bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2392b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2393b5df2d14SHong Zhang submatrix (same for all local rows) 2394b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 23956d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 23960298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 239795742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2398b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2399b5df2d14SHong Zhang submatrix (same for all local rows). 2400b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2401c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 24020298fd71SBarry Smith (possibly different for each block row) or NULL. 2403b5df2d14SHong Zhang 2404b5df2d14SHong Zhang 2405b5df2d14SHong Zhang Options Database Keys: 2406b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2407b5df2d14SHong Zhang block calculations (much slower) 2408b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2409b5df2d14SHong Zhang 2410b5df2d14SHong Zhang Notes: 2411b5df2d14SHong Zhang 2412b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2413b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2414b5df2d14SHong Zhang 241549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 241649a6f317SBarry Smith 2417b5df2d14SHong Zhang Storage Information: 2418b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2419b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2420b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2421b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2422b5df2d14SHong Zhang 2423b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2424b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 24250298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2426b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2427b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2428b5df2d14SHong Zhang 2429aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2430aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2431aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2432aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2433aa95bbe8SBarry Smith 2434b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2435b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2436b5df2d14SHong Zhang 2437b5df2d14SHong Zhang .vb 2438b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2439a4b1a0f6SJed Brown -------------------------- 2440c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2441c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2442c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2443a4b1a0f6SJed Brown -------------------------- 2444b5df2d14SHong Zhang .ve 2445b5df2d14SHong Zhang 2446b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2447b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 24486d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24496d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2450b5df2d14SHong Zhang 24516d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24526d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2453c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2454c2fc9fa9SBarry Smith 2455b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2456b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2457b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2458b5df2d14SHong Zhang matrices. 2459b5df2d14SHong Zhang 2460b5df2d14SHong Zhang Level: intermediate 2461b5df2d14SHong Zhang 2462b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2463b5df2d14SHong Zhang 2464ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2465b5df2d14SHong Zhang @*/ 24667087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2467b5df2d14SHong Zhang { 24684ac538c5SBarry Smith PetscErrorCode ierr; 2469b5df2d14SHong Zhang 2470b5df2d14SHong Zhang PetscFunctionBegin; 24716ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 24726ba663aaSJed Brown PetscValidType(B,1); 24736ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 24744ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2475b5df2d14SHong Zhang PetscFunctionReturn(0); 2476b5df2d14SHong Zhang } 2477b5df2d14SHong Zhang 24784a2ae208SSatish Balay #undef __FUNCT__ 247969b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2480a30f8f8cSSatish Balay /*@C 248169b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2482a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2483a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2484a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2485a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2486a30f8f8cSSatish Balay 2487a30f8f8cSSatish Balay Collective on MPI_Comm 2488a30f8f8cSSatish Balay 2489a30f8f8cSSatish Balay Input Parameters: 2490a30f8f8cSSatish Balay + comm - MPI communicator 2491bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2492bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2493a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2494a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2495a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2496a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2497a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2498a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2499a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2500a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2501a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2502a30f8f8cSSatish Balay submatrix (same for all local rows) 2503a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 25046d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 25050298fd71SBarry Smith (possibly different for each block block row) or NULL. 250695742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 250795742e49SBarry Smith set its value even if it is zero. 2508a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2509a30f8f8cSSatish Balay submatrix (same for all local rows). 2510a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2511a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 25120298fd71SBarry Smith each block row) or NULL. 2513a30f8f8cSSatish Balay 2514a30f8f8cSSatish Balay Output Parameter: 2515a30f8f8cSSatish Balay . A - the matrix 2516a30f8f8cSSatish Balay 2517a30f8f8cSSatish Balay Options Database Keys: 2518a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2519a30f8f8cSSatish Balay block calculations (much slower) 2520a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2521a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2522a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2523a30f8f8cSSatish Balay 2524175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2525ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2526175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2527175b88e8SBarry Smith 2528a30f8f8cSSatish Balay Notes: 2529d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 25306d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2531d1be2dadSMatthew Knepley 2532a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2533a30f8f8cSSatish Balay (possibly both). 2534a30f8f8cSSatish Balay 2535a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2536a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2537a30f8f8cSSatish Balay 253849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 253949a6f317SBarry Smith 2540a30f8f8cSSatish Balay Storage Information: 2541a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2542a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2543a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2544a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2545a30f8f8cSSatish Balay 2546a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2547a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 25480298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2549a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2550a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2551a30f8f8cSSatish Balay 2552a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2553a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2554a30f8f8cSSatish Balay 2555a30f8f8cSSatish Balay .vb 2556a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2557a4b1a0f6SJed Brown -------------------------- 2558c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2559c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2560c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2561a4b1a0f6SJed Brown -------------------------- 2562a30f8f8cSSatish Balay .ve 2563a30f8f8cSSatish Balay 2564a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2565a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 25666d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 25676d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2568a30f8f8cSSatish Balay 25696d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 25706d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2571a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2572a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2573a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2574a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2575a30f8f8cSSatish Balay matrices. 2576a30f8f8cSSatish Balay 2577a30f8f8cSSatish Balay Level: intermediate 2578a30f8f8cSSatish Balay 2579a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2580a30f8f8cSSatish Balay 258169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2582a30f8f8cSSatish Balay @*/ 2583a30f8f8cSSatish Balay 258469b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2585a30f8f8cSSatish Balay { 25866849ba73SBarry Smith PetscErrorCode ierr; 25871302d50aSBarry Smith PetscMPIInt size; 2588a30f8f8cSSatish Balay 2589a30f8f8cSSatish Balay PetscFunctionBegin; 2590f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2591f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2592273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2593273d9f13SBarry Smith if (size > 1) { 2594b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2595b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2596273d9f13SBarry Smith } else { 2597273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2598273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2599273d9f13SBarry Smith } 2600a30f8f8cSSatish Balay PetscFunctionReturn(0); 2601a30f8f8cSSatish Balay } 2602a30f8f8cSSatish Balay 2603a30f8f8cSSatish Balay 26044a2ae208SSatish Balay #undef __FUNCT__ 26054a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 26066849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2607a30f8f8cSSatish Balay { 2608a30f8f8cSSatish Balay Mat mat; 2609a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2610dfbe8321SBarry Smith PetscErrorCode ierr; 2611d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2612387bc808SHong Zhang PetscScalar *array; 2613a30f8f8cSSatish Balay 2614a30f8f8cSSatish Balay PetscFunctionBegin; 2615a30f8f8cSSatish Balay *newmat = 0; 261626fbe8dcSKarl Rupp 2617ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2618d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 26197adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 26201d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 26211e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 26221e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2623e1b6402fSHong Zhang 2624d5f3da31SBarry Smith mat->factortype = matin->factortype; 2625273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 262682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 26277fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 26287fff6886SHong Zhang 2629b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2630a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2631a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2632a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2633a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2634a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2635a30f8f8cSSatish Balay 2636899cda47SBarry Smith 2637a30f8f8cSSatish Balay a->size = oldmat->size; 2638a30f8f8cSSatish Balay a->rank = oldmat->rank; 2639a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2640a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2641a30f8f8cSSatish Balay a->rowindices = 0; 2642a30f8f8cSSatish Balay a->rowvalues = 0; 2643a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2644a30f8f8cSSatish Balay a->barray = 0; 2645899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2646899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2647899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2648899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2649a30f8f8cSSatish Balay 2650a30f8f8cSSatish Balay /* hash table stuff */ 2651a30f8f8cSSatish Balay a->ht = 0; 2652a30f8f8cSSatish Balay a->hd = 0; 2653a30f8f8cSSatish Balay a->ht_size = 0; 2654a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2655a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2656a30f8f8cSSatish Balay a->ht_total_ct = 0; 2657a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2658a30f8f8cSSatish Balay 2659899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2660a30f8f8cSSatish Balay if (oldmat->colmap) { 2661a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2662a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2663a30f8f8cSSatish Balay #else 2664854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 26653bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 26661302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2667a30f8f8cSSatish Balay #endif 2668a30f8f8cSSatish Balay } else a->colmap = 0; 2669387bc808SHong Zhang 2670a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2671785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 26723bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 26731302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2674a30f8f8cSSatish Balay } else a->garray = 0; 2675a30f8f8cSSatish Balay 2676ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2677a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 26783bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2679a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 26803bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 268182327fa8SHong Zhang 268282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 26833bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 268482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 26853bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2686387bc808SHong Zhang 2687387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 26881ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2689778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2690778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 26911ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 26921ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2693778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 26941ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 26953bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 26963bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 26973bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 26983bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 26993bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2700387bc808SHong Zhang 2701387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2702387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2703387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 27043bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 270582327fa8SHong Zhang 2706a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 27073bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2708a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 27093bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2710140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2711a30f8f8cSSatish Balay *newmat = mat; 2712a30f8f8cSSatish Balay PetscFunctionReturn(0); 2713a30f8f8cSSatish Balay } 2714a30f8f8cSSatish Balay 27154a2ae208SSatish Balay #undef __FUNCT__ 27165bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2717112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 271895936485SShri Abhyankar { 271995936485SShri Abhyankar PetscErrorCode ierr; 272095936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 272195936485SShri Abhyankar PetscScalar *vals,*buf; 2722ce94432eSBarry Smith MPI_Comm comm; 272395936485SShri Abhyankar MPI_Status status; 2724adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2725adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 272695936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 27273059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 272895936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2729461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 273095936485SShri Abhyankar int fd; 273195936485SShri Abhyankar 273295936485SShri Abhyankar PetscFunctionBegin; 2733c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2734c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2735ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 27360298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 27370298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 273895936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 27393059b6faSBarry Smith if (bs < 0) bs = 1; 274095936485SShri Abhyankar 274195936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 274295936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 274395936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 27445872f025SBarry Smith if (!rank) { 274595936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 274695936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 274702f61395SBarry Smith if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 274895936485SShri Abhyankar } 274995936485SShri Abhyankar 275095936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 275126fbe8dcSKarl Rupp M = header[1]; 275226fbe8dcSKarl Rupp N = header[2]; 275395936485SShri Abhyankar 275495936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2755461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2756461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 275795936485SShri Abhyankar 275895936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 275995936485SShri Abhyankar 276095936485SShri Abhyankar /* 276195936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 276295936485SShri Abhyankar divisible by the blocksize 276395936485SShri Abhyankar */ 276495936485SShri Abhyankar Mbs = M/bs; 276595936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 276695936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 276795936485SShri Abhyankar else Mbs++; 276895936485SShri Abhyankar if (extra_rows &&!rank) { 276995936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 277095936485SShri Abhyankar } 277195936485SShri Abhyankar 277295936485SShri Abhyankar /* determine ownership of all rows */ 277395936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 277495936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 277595936485SShri Abhyankar m = mbs*bs; 277695936485SShri Abhyankar } else { /* User Set */ 277795936485SShri Abhyankar m = newmat->rmap->n; 277895936485SShri Abhyankar mbs = m/bs; 277995936485SShri Abhyankar } 2780dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 27814dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 278295936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 278395936485SShri Abhyankar rowners[0] = 0; 278495936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 278595936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 278695936485SShri Abhyankar rstart = rowners[rank]; 278795936485SShri Abhyankar rend = rowners[rank+1]; 278895936485SShri Abhyankar 278995936485SShri Abhyankar /* distribute row lengths to all processors */ 2790785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 279195936485SShri Abhyankar if (!rank) { 2792854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 279395936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 279495936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2795785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 279695936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 279795936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 279895936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 279995936485SShri Abhyankar } else { 280095936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 280195936485SShri Abhyankar } 280295936485SShri Abhyankar 280395936485SShri Abhyankar if (!rank) { /* procs[0] */ 280495936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2805785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 280695936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 280795936485SShri Abhyankar for (i=0; i<size; i++) { 280895936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 280995936485SShri Abhyankar procsnz[i] += rowlengths[j]; 281095936485SShri Abhyankar } 281195936485SShri Abhyankar } 281295936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 281395936485SShri Abhyankar 281495936485SShri Abhyankar /* determine max buffer needed and allocate it */ 281595936485SShri Abhyankar maxnz = 0; 281695936485SShri Abhyankar for (i=0; i<size; i++) { 281795936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 281895936485SShri Abhyankar } 2819785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 282095936485SShri Abhyankar 282195936485SShri Abhyankar /* read in my part of the matrix column indices */ 282295936485SShri Abhyankar nz = procsnz[0]; 2823785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 282495936485SShri Abhyankar mycols = ibuf; 282595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 282695936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 282726fbe8dcSKarl Rupp if (size == 1) { 282826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 282926fbe8dcSKarl Rupp } 283095936485SShri Abhyankar 283195936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 283295936485SShri Abhyankar for (i=1; i<size-1; i++) { 283395936485SShri Abhyankar nz = procsnz[i]; 283495936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 283595936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 283695936485SShri Abhyankar } 283795936485SShri Abhyankar /* read in the stuff for the last proc */ 283895936485SShri Abhyankar if (size != 1) { 283995936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 284095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 284195936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 284295936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 284395936485SShri Abhyankar } 284495936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 284595936485SShri Abhyankar } else { /* procs[i], i>0 */ 284695936485SShri Abhyankar /* determine buffer space needed for message */ 284795936485SShri Abhyankar nz = 0; 284826fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2849785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 285095936485SShri Abhyankar mycols = ibuf; 285195936485SShri Abhyankar /* receive message of column indices*/ 285295936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 285395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 285495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 285595936485SShri Abhyankar } 285695936485SShri Abhyankar 285795936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2858dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2859dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 286095936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 286195936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 286295936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 286395936485SShri Abhyankar rowcount = 0; 286495936485SShri Abhyankar nzcount = 0; 286595936485SShri Abhyankar for (i=0; i<mbs; i++) { 286695936485SShri Abhyankar dcount = 0; 286795936485SShri Abhyankar odcount = 0; 286895936485SShri Abhyankar for (j=0; j<bs; j++) { 286995936485SShri Abhyankar kmax = locrowlens[rowcount]; 287095936485SShri Abhyankar for (k=0; k<kmax; k++) { 287195936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 287295936485SShri Abhyankar if (!mask[tmp]) { 287395936485SShri Abhyankar mask[tmp] = 1; 287495936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 287595936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 287695936485SShri Abhyankar } 287795936485SShri Abhyankar } 287895936485SShri Abhyankar rowcount++; 287995936485SShri Abhyankar } 288095936485SShri Abhyankar 288195936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 288295936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 288395936485SShri Abhyankar 288495936485SShri Abhyankar /* zero out the mask elements we set */ 288595936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 288695936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 288795936485SShri Abhyankar } 288895936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 288995936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 28906816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 289195936485SShri Abhyankar 289295936485SShri Abhyankar if (!rank) { 2893785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 289495936485SShri Abhyankar /* read in my part of the matrix numerical values */ 289595936485SShri Abhyankar nz = procsnz[0]; 289695936485SShri Abhyankar vals = buf; 289795936485SShri Abhyankar mycols = ibuf; 289895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 289995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 290026fbe8dcSKarl Rupp if (size == 1) { 290126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 290226fbe8dcSKarl Rupp } 290395936485SShri Abhyankar 290495936485SShri Abhyankar /* insert into matrix */ 290595936485SShri Abhyankar jj = rstart*bs; 290695936485SShri Abhyankar for (i=0; i<m; i++) { 290795936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 290895936485SShri Abhyankar mycols += locrowlens[i]; 290995936485SShri Abhyankar vals += locrowlens[i]; 291095936485SShri Abhyankar jj++; 291195936485SShri Abhyankar } 291295936485SShri Abhyankar 291395936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 291495936485SShri Abhyankar for (i=1; i<size-1; i++) { 291595936485SShri Abhyankar nz = procsnz[i]; 291695936485SShri Abhyankar vals = buf; 291795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 291895936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 291995936485SShri Abhyankar } 292095936485SShri Abhyankar /* the last proc */ 292195936485SShri Abhyankar if (size != 1) { 292295936485SShri Abhyankar nz = procsnz[i] - extra_rows; 292395936485SShri Abhyankar vals = buf; 292495936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 292595936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 292695936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 292795936485SShri Abhyankar } 292895936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 292995936485SShri Abhyankar 293095936485SShri Abhyankar } else { 293195936485SShri Abhyankar /* receive numeric values */ 2932785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 293395936485SShri Abhyankar 293495936485SShri Abhyankar /* receive message of values*/ 293595936485SShri Abhyankar vals = buf; 293695936485SShri Abhyankar mycols = ibuf; 293795936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 293895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 293995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 294095936485SShri Abhyankar 294195936485SShri Abhyankar /* insert into matrix */ 294295936485SShri Abhyankar jj = rstart*bs; 294395936485SShri Abhyankar for (i=0; i<m; i++) { 294495936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 294595936485SShri Abhyankar mycols += locrowlens[i]; 294695936485SShri Abhyankar vals += locrowlens[i]; 294795936485SShri Abhyankar jj++; 294895936485SShri Abhyankar } 294995936485SShri Abhyankar } 295095936485SShri Abhyankar 295195936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 295295936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 295395936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 295495936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 295595936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 295695936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 295795936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 295895936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 295995936485SShri Abhyankar PetscFunctionReturn(0); 296095936485SShri Abhyankar } 296195936485SShri Abhyankar 296295936485SShri Abhyankar #undef __FUNCT__ 29634a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2964dcf5cc72SBarry Smith /*XXXXX@ 2965a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2966a30f8f8cSSatish Balay 2967a30f8f8cSSatish Balay Input Parameters: 2968a30f8f8cSSatish Balay . mat - the matrix 2969a30f8f8cSSatish Balay . fact - factor 2970a30f8f8cSSatish Balay 2971c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2972a30f8f8cSSatish Balay 2973a30f8f8cSSatish Balay Level: advanced 2974a30f8f8cSSatish Balay 2975a30f8f8cSSatish Balay Notes: 2976a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2977a30f8f8cSSatish Balay 2978a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2979a30f8f8cSSatish Balay 2980a30f8f8cSSatish Balay .seealso: MatSetOption() 2981dcf5cc72SBarry Smith @XXXXX*/ 2982dcf5cc72SBarry Smith 298324d5174aSHong Zhang 29844a2ae208SSatish Balay #undef __FUNCT__ 2985985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2986985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 298724d5174aSHong Zhang { 298824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2989f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2990ca54ac64SHong Zhang PetscReal atmp; 299187828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2992dfbe8321SBarry Smith PetscErrorCode ierr; 29931302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 29941302d50aSBarry Smith PetscMPIInt rank,size; 29951302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 299687828ca2SBarry Smith PetscScalar *va; 29978a1c53f2SBarry Smith MatScalar *ba; 2998f4c0e9e4SHong Zhang MPI_Status stat; 299924d5174aSHong Zhang 300024d5174aSHong Zhang PetscFunctionBegin; 3001e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 30020298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 30031ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 3004f4c0e9e4SHong Zhang 3005ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 3006ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 3007f4c0e9e4SHong Zhang 3008d0f46423SBarry Smith bs = A->rmap->bs; 3009f4c0e9e4SHong Zhang mbs = a->mbs; 3010f4c0e9e4SHong Zhang Mbs = a->Mbs; 3011f4c0e9e4SHong Zhang ba = b->a; 3012f4c0e9e4SHong Zhang bi = b->i; 3013f4c0e9e4SHong Zhang bj = b->j; 3014f4c0e9e4SHong Zhang 3015f4c0e9e4SHong Zhang /* find ownerships */ 3016d0f46423SBarry Smith rowners_bs = A->rmap->range; 3017f4c0e9e4SHong Zhang 3018f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 3019785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 3020ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 3021f4c0e9e4SHong Zhang 3022f4c0e9e4SHong Zhang /* row_max for B */ 3023b8475685SHong Zhang if (rank != size-1) { 3024f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 3025f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 3026f4c0e9e4SHong Zhang brow = bs*i; 3027f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 3028f4c0e9e4SHong Zhang bcol = bs*(*bj); 3029f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 3030ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 303104d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 3032f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 3033f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 3034ca54ac64SHong Zhang row = brow + krow; /* local row index */ 3035ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 3036f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 3037f4c0e9e4SHong Zhang } 3038f4c0e9e4SHong Zhang } 3039f4c0e9e4SHong Zhang bj++; 3040f4c0e9e4SHong Zhang } 3041f4c0e9e4SHong Zhang } 3042f4c0e9e4SHong Zhang 3043f4c0e9e4SHong Zhang /* send values to its owners */ 3044f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 3045f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 3046ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 3047ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 3048ca54ac64SHong Zhang } 3049f4c0e9e4SHong Zhang } 3050f4c0e9e4SHong Zhang 3051f4c0e9e4SHong Zhang /* receive values */ 3052ca54ac64SHong Zhang if (rank) { 3053f4c0e9e4SHong Zhang rvalues = work; 3054ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 3055f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 3056ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 3057f4c0e9e4SHong Zhang /* process values */ 3058f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 3059ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 3060f4c0e9e4SHong Zhang } 3061f4c0e9e4SHong Zhang } 3062ca54ac64SHong Zhang } 3063f4c0e9e4SHong Zhang 30641ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 3065ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 306624d5174aSHong Zhang PetscFunctionReturn(0); 306724d5174aSHong Zhang } 30682798e883SHong Zhang 30692798e883SHong Zhang #undef __FUNCT__ 307041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 307141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 30722798e883SHong Zhang { 30732798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3074dfbe8321SBarry Smith PetscErrorCode ierr; 3075d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 30763649974fSBarry Smith PetscScalar *x,*ptr,*from; 3077ffe4fb16SHong Zhang Vec bb1; 30783649974fSBarry Smith const PetscScalar *b; 3079ffe4fb16SHong Zhang 3080ffe4fb16SHong Zhang PetscFunctionBegin; 3081e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3082e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 3083ffe4fb16SHong Zhang 3084a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 308541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3086a2b30743SBarry Smith PetscFunctionReturn(0); 3087a2b30743SBarry Smith } 3088a2b30743SBarry Smith 3089ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 3090ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 309141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 3092ffe4fb16SHong Zhang its--; 3093ffe4fb16SHong Zhang } 3094ffe4fb16SHong Zhang 3095ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 3096ffe4fb16SHong Zhang while (its--) { 3097ffe4fb16SHong Zhang 3098ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 3099ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3100ffe4fb16SHong Zhang 3101ffe4fb16SHong Zhang /* copy xx into slvec0a */ 31021ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 31031ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3104ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 31051ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 3106ffe4fb16SHong Zhang 3107efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 3108ffe4fb16SHong Zhang 3109ffe4fb16SHong Zhang /* copy bb into slvec1a */ 31101ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 31113649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 3112ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 31131ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 3114ffe4fb16SHong Zhang 3115ffe4fb16SHong Zhang /* set slvec1b = 0 */ 3116fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3117ffe4fb16SHong Zhang 3118ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 31191ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3120a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 3121ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3122ffe4fb16SHong Zhang 3123ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 3124ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 3125ffe4fb16SHong Zhang 3126ffe4fb16SHong Zhang /* local diagonal sweep */ 312741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 3128ffe4fb16SHong Zhang } 31296bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 3130fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 313141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3132fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 313341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3134fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 3135fa22f6d0SBarry Smith Vec xx1; 3136ace3abfcSBarry Smith PetscBool hasop; 313720f1ed55SBarry Smith const PetscScalar *diag; 3138887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 313920f1ed55SBarry Smith PetscInt i,n; 3140fa22f6d0SBarry Smith 3141fa22f6d0SBarry Smith if (!mat->xx1) { 3142fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 3143fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 3144fa22f6d0SBarry Smith } 3145fa22f6d0SBarry Smith xx1 = mat->xx1; 3146fa22f6d0SBarry Smith bb1 = mat->bb1; 3147fa22f6d0SBarry Smith 314841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 3149fa22f6d0SBarry Smith 3150fa22f6d0SBarry Smith if (!mat->diag) { 3151effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 31522a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 3153fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 3154fa22f6d0SBarry Smith } 3155fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 3156fa22f6d0SBarry Smith 3157fa22f6d0SBarry Smith if (hasop) { 3158fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 3159887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 316020f1ed55SBarry Smith } else { 316120f1ed55SBarry Smith /* 316220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 316320f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 3164887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 316520f1ed55SBarry Smith */ 316620f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 31673649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 31683649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 316920f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 317020f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 3171887ee2caSBarry Smith if (omega == 1.0) { 317226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 317320f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 3174887ee2caSBarry Smith } else { 317526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 3176887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 3177887ee2caSBarry Smith } 317820f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 31793649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 31803649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 318120f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 318220f1ed55SBarry Smith } 3183fa22f6d0SBarry Smith 3184fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 3185fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3186fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3187fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 3188fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3189fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 3190fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 3191fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3192fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3193fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3194effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 3195fa22f6d0SBarry Smith 3196fa22f6d0SBarry Smith /* local sweep */ 319741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 3198fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 3199f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 3200ffe4fb16SHong Zhang PetscFunctionReturn(0); 3201ffe4fb16SHong Zhang } 3202ffe4fb16SHong Zhang 3203ffe4fb16SHong Zhang #undef __FUNCT__ 320441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 320541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 3206ffe4fb16SHong Zhang { 3207ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3208dfbe8321SBarry Smith PetscErrorCode ierr; 32092798e883SHong Zhang Vec lvec1,bb1; 32102798e883SHong Zhang 32112798e883SHong Zhang PetscFunctionBegin; 3212e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3213e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 32142798e883SHong Zhang 3215c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 32162798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 321741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 32182798e883SHong Zhang its--; 32192798e883SHong Zhang } 32202798e883SHong Zhang 32212798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 32222798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 32232798e883SHong Zhang while (its--) { 3224ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32252798e883SHong Zhang 32262798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 32272798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3228efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 32292798e883SHong Zhang 3230ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32312798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3232ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32332798e883SHong Zhang 32342798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3235efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 32362798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 32372798e883SHong Zhang 3238ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32392798e883SHong Zhang 3240c14dc6b6SHong Zhang /* diagonal sweep */ 324141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 32422798e883SHong Zhang } 32436bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 32446bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 32456bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 32462798e883SHong Zhang PetscFunctionReturn(0); 32472798e883SHong Zhang } 32482798e883SHong Zhang 3249dfb205c3SBarry Smith #undef __FUNCT__ 3250dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 3251dfb205c3SBarry Smith /*@ 3252dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3253dfb205c3SBarry Smith CSR format the local rows. 3254dfb205c3SBarry Smith 3255dfb205c3SBarry Smith Collective on MPI_Comm 3256dfb205c3SBarry Smith 3257dfb205c3SBarry Smith Input Parameters: 3258dfb205c3SBarry Smith + comm - MPI communicator 3259dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3260dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3261dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3262dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3263dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3264dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3265dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3266dfb205c3SBarry Smith . i - row indices 3267dfb205c3SBarry Smith . j - column indices 3268dfb205c3SBarry Smith - a - matrix values 3269dfb205c3SBarry Smith 3270dfb205c3SBarry Smith Output Parameter: 3271dfb205c3SBarry Smith . mat - the matrix 3272dfb205c3SBarry Smith 3273dfb205c3SBarry Smith Level: intermediate 3274dfb205c3SBarry Smith 3275dfb205c3SBarry Smith Notes: 3276dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3277dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3278dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3279dfb205c3SBarry Smith 3280dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3281dfb205c3SBarry Smith 3282dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3283dfb205c3SBarry Smith 3284dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 328569b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3286dfb205c3SBarry Smith @*/ 32877087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3288dfb205c3SBarry Smith { 3289dfb205c3SBarry Smith PetscErrorCode ierr; 3290dfb205c3SBarry Smith 3291dfb205c3SBarry Smith 3292dfb205c3SBarry Smith PetscFunctionBegin; 3293f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3294dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3295dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3296dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3297dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3298dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3299dfb205c3SBarry Smith PetscFunctionReturn(0); 3300dfb205c3SBarry Smith } 3301dfb205c3SBarry Smith 3302dfb205c3SBarry Smith 3303dfb205c3SBarry Smith #undef __FUNCT__ 3304dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 3305dfb205c3SBarry Smith /*@C 3306dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3307dfb205c3SBarry Smith (the default parallel PETSc format). 3308dfb205c3SBarry Smith 3309dfb205c3SBarry Smith Collective on MPI_Comm 3310dfb205c3SBarry Smith 3311dfb205c3SBarry Smith Input Parameters: 33121c4f3114SJed Brown + B - the matrix 3313dfb205c3SBarry Smith . bs - the block size 3314dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3315dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3316dfb205c3SBarry Smith - v - optional values in the matrix 3317dfb205c3SBarry Smith 3318dfb205c3SBarry Smith Level: developer 3319dfb205c3SBarry Smith 3320dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3321dfb205c3SBarry Smith 332269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3323dfb205c3SBarry Smith @*/ 33247087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3325dfb205c3SBarry Smith { 33264ac538c5SBarry Smith PetscErrorCode ierr; 3327dfb205c3SBarry Smith 3328dfb205c3SBarry Smith PetscFunctionBegin; 33294ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3330dfb205c3SBarry Smith PetscFunctionReturn(0); 3331dfb205c3SBarry Smith } 3332dfb205c3SBarry Smith 3333de4b53ebSHong Zhang #undef __FUNCT__ 333410c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 333510c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 33364dcd73b1SHong Zhang { 33374dcd73b1SHong Zhang PetscErrorCode ierr; 333810c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 333910c56fdeSHong Zhang PetscInt *indx; 334010c56fdeSHong Zhang PetscScalar *values; 3341dfb205c3SBarry Smith 33424dcd73b1SHong Zhang PetscFunctionBegin; 33434dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 334410c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 334510c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 334610c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 334710c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 33484dcd73b1SHong Zhang 334910c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 335010c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 335110c56fdeSHong Zhang if (n == PETSC_DECIDE) { 335210c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 335310c56fdeSHong Zhang } 335410c56fdeSHong Zhang /* Check sum(n) = Nbs */ 3355b2566f29SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 335610c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 335710c56fdeSHong Zhang 335810c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 335910c56fdeSHong Zhang rstart -= mbs; 33604dcd73b1SHong Zhang 33614dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 336210c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3363e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 336410c56fdeSHong Zhang for (i=0; i<mbs; i++) { 33654dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 33664dcd73b1SHong Zhang nnz = nnz/bs; 33674dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 33684dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 33694dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 33704dcd73b1SHong Zhang } 3371e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 33724dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 33734dcd73b1SHong Zhang 33744dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 337510c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 33764dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 33774dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 33784dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 33794dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 33804dcd73b1SHong Zhang } 33814dcd73b1SHong Zhang 338210c56fdeSHong Zhang /* numeric phase */ 33834dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 338410c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 33854dcd73b1SHong Zhang 3386e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 33874dcd73b1SHong Zhang for (i=0; i<m; i++) { 33884dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 33894dcd73b1SHong Zhang Ii = i + rstart; 339010c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 33914dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 33924dcd73b1SHong Zhang } 3393e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 339410c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 339510c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 33964dcd73b1SHong Zhang PetscFunctionReturn(0); 33974dcd73b1SHong Zhang } 3398