1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8*cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined" 24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 24136bd2089SBarry Smith { 24236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 24336bd2089SBarry Smith PetscErrorCode ierr; 24436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 24536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 24636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 24736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24836bd2089SBarry Smith const PetscScalar *value = v; 24936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 25036bd2089SBarry Smith 25136bd2089SBarry Smith PetscFunctionBegin; 25236bd2089SBarry Smith if (col < row) { 25336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 25436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 25536bd2089SBarry Smith } 25636bd2089SBarry Smith rp = aj + ai[row]; 25736bd2089SBarry Smith ap = aa + bs2*ai[row]; 25836bd2089SBarry Smith rmax = imax[row]; 25936bd2089SBarry Smith nrow = ailen[row]; 26036bd2089SBarry Smith value = v; 26136bd2089SBarry Smith low = 0; 26236bd2089SBarry Smith high = nrow; 26336bd2089SBarry Smith 26436bd2089SBarry Smith while (high-low > 7) { 26536bd2089SBarry Smith t = (low+high)/2; 26636bd2089SBarry Smith if (rp[t] > col) high = t; 26736bd2089SBarry Smith else low = t; 26836bd2089SBarry Smith } 26936bd2089SBarry Smith for (i=low; i<high; i++) { 27036bd2089SBarry Smith if (rp[i] > col) break; 27136bd2089SBarry Smith if (rp[i] == col) { 27236bd2089SBarry Smith bap = ap + bs2*i; 27336bd2089SBarry Smith if (roworiented) { 27436bd2089SBarry Smith if (is == ADD_VALUES) { 27536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27736bd2089SBarry Smith bap[jj] += *value++; 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } 28036bd2089SBarry Smith } else { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 28336bd2089SBarry Smith bap[jj] = *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } 28736bd2089SBarry Smith } else { 28836bd2089SBarry Smith if (is == ADD_VALUES) { 28936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29136bd2089SBarry Smith *bap++ += *value++; 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith } else { 29536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29736bd2089SBarry Smith *bap++ = *value++; 29836bd2089SBarry Smith } 29936bd2089SBarry Smith } 30036bd2089SBarry Smith } 30136bd2089SBarry Smith } 30236bd2089SBarry Smith goto noinsert2; 30336bd2089SBarry Smith } 30436bd2089SBarry Smith } 30536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 30636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 30736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30836bd2089SBarry Smith N = nrow++ - 1; high++; 30936bd2089SBarry Smith /* shift up all the later entries in this row */ 31036bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 31136bd2089SBarry Smith rp[ii+1] = rp[ii]; 31236bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 31336bd2089SBarry Smith } 31436bd2089SBarry Smith if (N >= i) { 31536bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 31636bd2089SBarry Smith } 31736bd2089SBarry Smith rp[i] = col; 31836bd2089SBarry Smith bap = ap + bs2*i; 31936bd2089SBarry Smith if (roworiented) { 32036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 32236bd2089SBarry Smith bap[jj] = *value++; 32336bd2089SBarry Smith } 32436bd2089SBarry Smith } 32536bd2089SBarry Smith } else { 32636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32836bd2089SBarry Smith *bap++ = *value++; 32936bd2089SBarry Smith } 33036bd2089SBarry Smith } 33136bd2089SBarry Smith } 33236bd2089SBarry Smith noinsert2:; 33336bd2089SBarry Smith ailen[row] = nrow; 33436bd2089SBarry Smith PetscFunctionReturn(0); 33536bd2089SBarry Smith } 33636bd2089SBarry Smith 33736bd2089SBarry Smith #undef __FUNCT__ 33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 33936bd2089SBarry Smith /* 34036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 34136bd2089SBarry Smith */ 34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34336bd2089SBarry Smith { 34436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscErrorCode ierr; 34836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 35036bd2089SBarry Smith const PetscScalar *value = v; 35136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35236bd2089SBarry Smith 35336bd2089SBarry Smith PetscFunctionBegin; 35436bd2089SBarry Smith rp = aj + ai[row]; 35536bd2089SBarry Smith ap = aa + bs2*ai[row]; 35636bd2089SBarry Smith rmax = imax[row]; 35736bd2089SBarry Smith nrow = ailen[row]; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith bap[jj] += value[jj]; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith bap += bs; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } else { 39336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 39436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39536bd2089SBarry Smith bap[jj] = value[jj]; 39636bd2089SBarry Smith } 39736bd2089SBarry Smith bap += bs; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith goto noinsert2; 40236bd2089SBarry Smith } 40336bd2089SBarry Smith } 40436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 40636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40736bd2089SBarry Smith N = nrow++ - 1; high++; 40836bd2089SBarry Smith /* shift up all the later entries in this row */ 40936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 41036bd2089SBarry Smith rp[ii+1] = rp[ii]; 41136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith if (N >= i) { 41436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp[i] = col; 41736bd2089SBarry Smith bap = ap + bs2*i; 41836bd2089SBarry Smith if (roworiented) { 41936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 42136bd2089SBarry Smith bap[jj] = *value++; 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith } else { 42536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42736bd2089SBarry Smith *bap++ = *value++; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith } 43036bd2089SBarry Smith } 43136bd2089SBarry Smith noinsert2:; 43236bd2089SBarry Smith ailen[row] = nrow; 43336bd2089SBarry Smith PetscFunctionReturn(0); 43436bd2089SBarry Smith } 43536bd2089SBarry Smith 43636bd2089SBarry Smith #undef __FUNCT__ 437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 43836bd2089SBarry Smith /* 43936bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 44036bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 44136bd2089SBarry Smith */ 442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 443a30f8f8cSSatish Balay { 4440880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 445f15d580aSBarry Smith const MatScalar *value; 446f15d580aSBarry Smith MatScalar *barray =baij->barray; 447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 450899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 451d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4520880e062SHong Zhang 453a30f8f8cSSatish Balay PetscFunctionBegin; 4540880e062SHong Zhang if (!barray) { 455785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4560880e062SHong Zhang baij->barray = barray; 4570880e062SHong Zhang } 4580880e062SHong Zhang 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang stepval = (n-1)*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang stepval = (m-1)*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (i=0; i<m; i++) { 4650880e062SHong Zhang if (im[i] < 0) continue; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4680880e062SHong Zhang #endif 4690880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4700880e062SHong Zhang row = im[i] - rstart; 4710880e062SHong Zhang for (j=0; j<n; j++) { 472f3f98c53SJed Brown if (im[i] > in[j]) { 473f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 474e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 475f3f98c53SJed Brown } 4760880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4770880e062SHong Zhang if ((roworiented) && (n == 1)) { 478f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4790880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 480f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4810880e062SHong Zhang } else { /* Here a copy is required */ 4820880e062SHong Zhang if (roworiented) { 4830880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4840880e062SHong Zhang } else { 4850880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4860880e062SHong Zhang } 4870880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4880880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4890880e062SHong Zhang *barray++ = *value++; 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang barray -=bs2; 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4960880e062SHong Zhang col = in[j] - cstart; 49736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 49826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 500bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang else { 5030880e062SHong Zhang if (mat->was_assembled) { 5040880e062SHong Zhang if (!baij->colmap) { 505ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5060880e062SHong Zhang } 5070880e062SHong Zhang 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5101302d50aSBarry Smith { PetscInt data; 5110880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 512e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5130880e062SHong Zhang } 5140880e062SHong Zhang #else 515e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5160880e062SHong Zhang #endif 5170880e062SHong Zhang #endif 5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5190880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5200880e062SHong Zhang col = (col - 1)/bs; 5210880e062SHong Zhang #else 5220880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5230880e062SHong Zhang #endif 5240880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 525ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5260880e062SHong Zhang col = in[j]; 5270880e062SHong Zhang } 52826fbe8dcSKarl Rupp } else col = in[j]; 52936bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5300880e062SHong Zhang } 5310880e062SHong Zhang } 5320880e062SHong Zhang } else { 533bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5340880e062SHong Zhang if (!baij->donotstash) { 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5370880e062SHong Zhang } else { 5380880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5390880e062SHong Zhang } 5400880e062SHong Zhang } 5410880e062SHong Zhang } 5420880e062SHong Zhang } 5430880e062SHong Zhang PetscFunctionReturn(0); 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 553d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 558e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 563e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data--; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 594dfbe8321SBarry Smith PetscErrorCode ierr; 595a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay if (baij->size == 1) { 599a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 600a30f8f8cSSatish Balay } else { 601a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 602785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 605a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 607b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6088f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 609a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6100b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6110b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6120b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6130b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 614899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 615d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6160b8dc8d2SHong Zhang MatScalar *v; 6170b8dc8d2SHong Zhang 618dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 619d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6200b8dc8d2SHong Zhang /* Amat */ 6210b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6220b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6230b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6240b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6250b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6260b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6270b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6280b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6290b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6300b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6310b8dc8d2SHong Zhang /* non-diagonal block */ 6320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6330b8dc8d2SHong Zhang } 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 6360b8dc8d2SHong Zhang } 6370b8dc8d2SHong Zhang /* Bmat */ 6380b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6390b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6400b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6410b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6420b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6430b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6440b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6450b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6460b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6470b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6480b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6490b8dc8d2SHong Zhang } 6500b8dc8d2SHong Zhang } 6510b8dc8d2SHong Zhang } 6520b8dc8d2SHong Zhang } 653b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6540b8dc8d2SHong Zhang *norm = 0.0; 655d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6560b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6570b8dc8d2SHong Zhang } 65874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 659f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 660a30f8f8cSSatish Balay } 661a30f8f8cSSatish Balay PetscFunctionReturn(0); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 6644a2ae208SSatish Balay #undef __FUNCT__ 6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 667a30f8f8cSSatish Balay { 668a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 669dfbe8321SBarry Smith PetscErrorCode ierr; 6701302d50aSBarry Smith PetscInt nstash,reallocs; 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay PetscFunctionBegin; 67326fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 674a30f8f8cSSatish Balay 675d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6761e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 677a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6781e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 679a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6801e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 681a30f8f8cSSatish Balay PetscFunctionReturn(0); 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay 6844a2ae208SSatish Balay #undef __FUNCT__ 6854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 686dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 687a30f8f8cSSatish Balay { 688a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 689a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6906849ba73SBarry Smith PetscErrorCode ierr; 69113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 692e44c0bd4SBarry Smith PetscInt *row,*col; 693ace3abfcSBarry Smith PetscBool other_disassembled; 69413f74950SBarry Smith PetscMPIInt n; 695ace3abfcSBarry Smith PetscBool r1,r2,r3; 696a30f8f8cSSatish Balay MatScalar *val; 697a30f8f8cSSatish Balay 69891c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 699a30f8f8cSSatish Balay PetscFunctionBegin; 7004cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 701a30f8f8cSSatish Balay while (1) { 702a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 703a30f8f8cSSatish Balay if (!flg) break; 704a30f8f8cSSatish Balay 705a30f8f8cSSatish Balay for (i=0; i<n;) { 706a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 70726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 70826fbe8dcSKarl Rupp if (row[j] != rstart) break; 70926fbe8dcSKarl Rupp } 710a30f8f8cSSatish Balay if (j < n) ncols = j-i; 711a30f8f8cSSatish Balay else ncols = n-i; 712a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7134b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 714a30f8f8cSSatish Balay i = j; 715a30f8f8cSSatish Balay } 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 718a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 719a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 720a30f8f8cSSatish Balay restore the original flags */ 721a30f8f8cSSatish Balay r1 = baij->roworiented; 722a30f8f8cSSatish Balay r2 = a->roworiented; 72391c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 72426fbe8dcSKarl Rupp 725a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 726a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 72726fbe8dcSKarl Rupp 72891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 729a30f8f8cSSatish Balay while (1) { 730a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 731a30f8f8cSSatish Balay if (!flg) break; 732a30f8f8cSSatish Balay 733a30f8f8cSSatish Balay for (i=0; i<n;) { 734a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 73526fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 73626fbe8dcSKarl Rupp if (row[j] != rstart) break; 73726fbe8dcSKarl Rupp } 738a30f8f8cSSatish Balay if (j < n) ncols = j-i; 739a30f8f8cSSatish Balay else ncols = n-i; 7404b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 741a30f8f8cSSatish Balay i = j; 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 74526fbe8dcSKarl Rupp 746a30f8f8cSSatish Balay baij->roworiented = r1; 747a30f8f8cSSatish Balay a->roworiented = r2; 74826fbe8dcSKarl Rupp 74991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 750a30f8f8cSSatish Balay } 751a30f8f8cSSatish Balay 752a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 756a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 757a30f8f8cSSatish Balay /* 758a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 759a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 760a30f8f8cSSatish Balay */ 761a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 762b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 763a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 764ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay 768a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 76940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 773a30f8f8cSSatish Balay 77474ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77526fbe8dcSKarl Rupp 776a30f8f8cSSatish Balay baij->rowvalues = 0; 7774f9cfa9eSBarry Smith 7784f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7794f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 780e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 781b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 782e56f5c9eSBarry Smith } 783a30f8f8cSSatish Balay PetscFunctionReturn(0); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay 7867da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 787dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7889804daf3SBarry Smith #include <petscdraw.h> 7894a2ae208SSatish Balay #undef __FUNCT__ 7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7916849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 792a30f8f8cSSatish Balay { 793a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 794dfbe8321SBarry Smith PetscErrorCode ierr; 795d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 7967da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 797ace3abfcSBarry Smith PetscBool iascii,isdraw; 798b0a32e0cSBarry Smith PetscViewer sviewer; 799f3ef73ceSBarry Smith PetscViewerFormat format; 800a30f8f8cSSatish Balay 801a30f8f8cSSatish Balay PetscFunctionBegin; 802251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 803251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 80432077d6dSBarry Smith if (iascii) { 805b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 806456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 807a30f8f8cSSatish Balay MatInfo info; 808ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 809a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8101575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 8117b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 812a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 813e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 815e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 816b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8171575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 81807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 819a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 820a30f8f8cSSatish Balay PetscFunctionReturn(0); 821fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 82277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 823a30f8f8cSSatish Balay PetscFunctionReturn(0); 824c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 825c1490034SHong Zhang PetscFunctionReturn(0); 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay } 828a30f8f8cSSatish Balay 829a30f8f8cSSatish Balay if (isdraw) { 830b0a32e0cSBarry Smith PetscDraw draw; 831ace3abfcSBarry Smith PetscBool isnull; 832b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 833b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay 8367da1fb6eSBarry Smith { 837a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 838a30f8f8cSSatish Balay Mat A; 83965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 841d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 842a30f8f8cSSatish Balay MatScalar *a; 8433e219373SBarry Smith const char *matname; 844a30f8f8cSSatish Balay 845f204ca49SKris Buschelman /* Should this be the same type as mat? */ 846ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 847a30f8f8cSSatish Balay if (!rank) { 848f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 849a30f8f8cSSatish Balay } else { 850f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 851a30f8f8cSSatish Balay } 852f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8530298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8542b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8553bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 856a30f8f8cSSatish Balay 857a30f8f8cSSatish Balay /* copy over the A part */ 85865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 859a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 860785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 861a30f8f8cSSatish Balay 862a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 863e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 86426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 865a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 866e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 867a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 868dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 86926fbe8dcSKarl Rupp col++; 87026fbe8dcSKarl Rupp a += bs; 871a30f8f8cSSatish Balay } 872a30f8f8cSSatish Balay } 873a30f8f8cSSatish Balay } 874a30f8f8cSSatish Balay /* copy over the B part */ 87565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 87665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 877a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 878e9f7bc9eSHong Zhang 879e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 88026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 881a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 882a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 883a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 884799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 88526fbe8dcSKarl Rupp col++; 88626fbe8dcSKarl Rupp a += bs; 887a30f8f8cSSatish Balay } 888a30f8f8cSSatish Balay } 889a30f8f8cSSatish Balay } 890a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 891a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 892a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 893a30f8f8cSSatish Balay /* 894a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 895b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 896a30f8f8cSSatish Balay */ 8973f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 898ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 8993e219373SBarry Smith if (!rank) { 900ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 9017da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 902a30f8f8cSSatish Balay } 9033f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9041575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9056bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 906a30f8f8cSSatish Balay } 907a30f8f8cSSatish Balay PetscFunctionReturn(0); 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay 9104a2ae208SSatish Balay #undef __FUNCT__ 9114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 912dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 913a30f8f8cSSatish Balay { 914dfbe8321SBarry Smith PetscErrorCode ierr; 915ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 916a30f8f8cSSatish Balay 917a30f8f8cSSatish Balay PetscFunctionBegin; 918251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 919251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 920251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 921251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 92232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 923a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 924a30f8f8cSSatish Balay } 925a30f8f8cSSatish Balay PetscFunctionReturn(0); 926a30f8f8cSSatish Balay } 927a30f8f8cSSatish Balay 9284a2ae208SSatish Balay #undef __FUNCT__ 9294a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 930dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 931a30f8f8cSSatish Balay { 932a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 933dfbe8321SBarry Smith PetscErrorCode ierr; 934a30f8f8cSSatish Balay 935a30f8f8cSSatish Balay PetscFunctionBegin; 936a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 937d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 938a30f8f8cSSatish Balay #endif 939a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 940a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 9416bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 9426bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 943a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 9446bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 945a30f8f8cSSatish Balay #else 94605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 947a30f8f8cSSatish Balay #endif 94805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 9496bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 9506bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 9516bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 9526bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 9536bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 9546bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 9556bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 9566bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 9575755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 95805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 95905b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 9606bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 9616bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 9626bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 963ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 96405b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 965a30f8f8cSSatish Balay #endif 96659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 96759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 968899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 969bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 970901853e0SKris Buschelman 971dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 972bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 973bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 974bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 975bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 976bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 9776214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 9786214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 9796214f412SHong Zhang #endif 980a30f8f8cSSatish Balay PetscFunctionReturn(0); 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay 9834a2ae208SSatish Balay #undef __FUNCT__ 984547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 985547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 986547795f9SHong Zhang { 987547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 988547795f9SHong Zhang PetscErrorCode ierr; 989547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 9906de40e93SBarry Smith PetscScalar *from; 9916de40e93SBarry Smith const PetscScalar *x; 992547795f9SHong Zhang 993547795f9SHong Zhang PetscFunctionBegin; 994547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 995e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 996547795f9SHong Zhang 997547795f9SHong Zhang /* diagonal part */ 998547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 999547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1000547795f9SHong Zhang 1001547795f9SHong Zhang /* subdiagonal part */ 1002547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1003547795f9SHong Zhang 1004547795f9SHong Zhang /* copy x into the vec slvec0 */ 1005547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10066de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1007547795f9SHong Zhang 1008547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1009547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10106de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1011547795f9SHong Zhang 1012547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1013547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1014547795f9SHong Zhang /* supperdiagonal part */ 1015547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1016547795f9SHong Zhang PetscFunctionReturn(0); 1017547795f9SHong Zhang } 1018547795f9SHong Zhang 1019547795f9SHong Zhang #undef __FUNCT__ 1020a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 1021dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1022a9d4b620SHong Zhang { 1023a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1024dfbe8321SBarry Smith PetscErrorCode ierr; 1025d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1026d9ca1df4SBarry Smith PetscScalar *from; 1027d9ca1df4SBarry Smith const PetscScalar *x; 1028a9d4b620SHong Zhang 1029a9d4b620SHong Zhang PetscFunctionBegin; 1030a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1031e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1032a9d4b620SHong Zhang 1033a9d4b620SHong Zhang /* diagonal part */ 1034a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1035fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1036a9d4b620SHong Zhang 1037a9d4b620SHong Zhang /* subdiagonal part */ 1038a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1039fc165ae2SBarry Smith 1040a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10411ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1042d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1043a9d4b620SHong Zhang 1044fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1045fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1046d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1047fc165ae2SBarry Smith 1048fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1049ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1050a9d4b620SHong Zhang /* supperdiagonal part */ 1051a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1052a9d4b620SHong Zhang PetscFunctionReturn(0); 1053a9d4b620SHong Zhang } 1054a9d4b620SHong Zhang 1055a9d4b620SHong Zhang #undef __FUNCT__ 105640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1057dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1058a30f8f8cSSatish Balay { 1059a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1060dfbe8321SBarry Smith PetscErrorCode ierr; 10611302d50aSBarry Smith PetscInt nt; 1062a30f8f8cSSatish Balay 1063a30f8f8cSSatish Balay PetscFunctionBegin; 1064a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1065e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1066e7e72b3dSBarry Smith 1067a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1068e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 106965d70643SHong Zhang 1070ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1071b941877fSHong Zhang /* do diagonal part */ 1072b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1073b941877fSHong Zhang /* do supperdiagonal part */ 1074ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1075b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1076b941877fSHong Zhang /* do subdiagonal part */ 1077b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1078ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1079ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1080a30f8f8cSSatish Balay PetscFunctionReturn(0); 1081a30f8f8cSSatish Balay } 1082a30f8f8cSSatish Balay 10834a2ae208SSatish Balay #undef __FUNCT__ 10844a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1085dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1086a30f8f8cSSatish Balay { 1087de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1088dfbe8321SBarry Smith PetscErrorCode ierr; 1089d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1090d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1091d9ca1df4SBarry Smith const PetscScalar *x; 1092a9d4b620SHong Zhang 1093a9d4b620SHong Zhang PetscFunctionBegin; 1094a9d4b620SHong Zhang /* 1095ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 10960ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1097a9d4b620SHong Zhang */ 1098a9d4b620SHong Zhang /* diagonal part */ 1099a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11002dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1101a9d4b620SHong Zhang 1102a9d4b620SHong Zhang /* subdiagonal part */ 1103a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1104a9d4b620SHong Zhang 1105a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11061ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1107d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1108a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 11091ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1110a9d4b620SHong Zhang 1111ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1112d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1113ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1114a9d4b620SHong Zhang 1115a9d4b620SHong Zhang /* supperdiagonal part */ 1116a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1117a9d4b620SHong Zhang PetscFunctionReturn(0); 1118a9d4b620SHong Zhang } 1119a9d4b620SHong Zhang 1120a9d4b620SHong Zhang #undef __FUNCT__ 1121a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1122dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1123a9d4b620SHong Zhang { 1124a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1125dfbe8321SBarry Smith PetscErrorCode ierr; 1126a30f8f8cSSatish Balay 1127a30f8f8cSSatish Balay PetscFunctionBegin; 1128ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1129b941877fSHong Zhang /* do diagonal part */ 1130b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1131b941877fSHong Zhang /* do supperdiagonal part */ 1132ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1133de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1134de8b6608SHong Zhang 1135b941877fSHong Zhang /* do subdiagonal part */ 1136a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1137ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1138ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay PetscFunctionReturn(0); 1140a30f8f8cSSatish Balay } 1141a30f8f8cSSatish Balay 1142a30f8f8cSSatish Balay /* 1143a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1144a30f8f8cSSatish Balay diagonal block 1145a30f8f8cSSatish Balay */ 11464a2ae208SSatish Balay #undef __FUNCT__ 11474a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1148dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1149a30f8f8cSSatish Balay { 1150a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1151dfbe8321SBarry Smith PetscErrorCode ierr; 1152a30f8f8cSSatish Balay 1153a30f8f8cSSatish Balay PetscFunctionBegin; 1154e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1155a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1156a30f8f8cSSatish Balay PetscFunctionReturn(0); 1157a30f8f8cSSatish Balay } 1158a30f8f8cSSatish Balay 11594a2ae208SSatish Balay #undef __FUNCT__ 11604a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1161f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1162a30f8f8cSSatish Balay { 1163a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1164dfbe8321SBarry Smith PetscErrorCode ierr; 1165a30f8f8cSSatish Balay 1166a30f8f8cSSatish Balay PetscFunctionBegin; 1167f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1168f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1169a30f8f8cSSatish Balay PetscFunctionReturn(0); 1170a30f8f8cSSatish Balay } 1171a30f8f8cSSatish Balay 11724a2ae208SSatish Balay #undef __FUNCT__ 11734a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11741302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1175a30f8f8cSSatish Balay { 1176d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1177d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1178d0d4cfc2SHong Zhang PetscErrorCode ierr; 1179d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1180d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1181899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1182d0d4cfc2SHong Zhang 1183a30f8f8cSSatish Balay PetscFunctionBegin; 1184e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1185d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1186d0d4cfc2SHong Zhang 1187d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1188d0d4cfc2SHong Zhang /* 1189d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1190d0d4cfc2SHong Zhang */ 1191d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1192d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1193d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1194d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1195d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 119626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1197d0d4cfc2SHong Zhang } 1198dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1199d0d4cfc2SHong Zhang } 1200d0d4cfc2SHong Zhang 1201e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1202d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1203d0d4cfc2SHong Zhang 1204d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1205d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1206d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1207d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1208d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1209d0d4cfc2SHong Zhang nztot = nzA + nzB; 1210d0d4cfc2SHong Zhang 1211d0d4cfc2SHong Zhang cmap = mat->garray; 1212d0d4cfc2SHong Zhang if (v || idx) { 1213d0d4cfc2SHong Zhang if (nztot) { 1214d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1215d0d4cfc2SHong Zhang PetscInt imark = -1; 1216d0d4cfc2SHong Zhang if (v) { 1217d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1218d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1219d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1220d0d4cfc2SHong Zhang else break; 1221d0d4cfc2SHong Zhang } 1222d0d4cfc2SHong Zhang imark = i; 1223d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1224d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1225d0d4cfc2SHong Zhang } 1226d0d4cfc2SHong Zhang if (idx) { 1227d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1228d0d4cfc2SHong Zhang if (imark > -1) { 1229d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1230d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1231d0d4cfc2SHong Zhang } 1232d0d4cfc2SHong Zhang } else { 1233d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 123426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1235d0d4cfc2SHong Zhang else break; 1236d0d4cfc2SHong Zhang } 1237d0d4cfc2SHong Zhang imark = i; 1238d0d4cfc2SHong Zhang } 1239d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1240d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang } else { 1243d0d4cfc2SHong Zhang if (idx) *idx = 0; 1244d0d4cfc2SHong Zhang if (v) *v = 0; 1245d0d4cfc2SHong Zhang } 1246d0d4cfc2SHong Zhang } 1247d0d4cfc2SHong Zhang *nz = nztot; 1248d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1249d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1250a30f8f8cSSatish Balay PetscFunctionReturn(0); 1251a30f8f8cSSatish Balay } 1252a30f8f8cSSatish Balay 12534a2ae208SSatish Balay #undef __FUNCT__ 12544a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12551302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1256a30f8f8cSSatish Balay { 1257a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1258a30f8f8cSSatish Balay 1259a30f8f8cSSatish Balay PetscFunctionBegin; 1260e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1261a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1262a30f8f8cSSatish Balay PetscFunctionReturn(0); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 12654a2ae208SSatish Balay #undef __FUNCT__ 1266d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1267d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1268d0d4cfc2SHong Zhang { 1269d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1270d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1271d0d4cfc2SHong Zhang 1272d0d4cfc2SHong Zhang PetscFunctionBegin; 1273d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1274d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1275d0d4cfc2SHong Zhang } 1276d0d4cfc2SHong Zhang #undef __FUNCT__ 1277d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1278d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1279d0d4cfc2SHong Zhang { 1280d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1281d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1282d0d4cfc2SHong Zhang 1283d0d4cfc2SHong Zhang PetscFunctionBegin; 1284d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1285d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1286d0d4cfc2SHong Zhang } 1287d0d4cfc2SHong Zhang 1288d0d4cfc2SHong Zhang #undef __FUNCT__ 128999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 129099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 129199cafbc1SBarry Smith { 129299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 129399cafbc1SBarry Smith PetscErrorCode ierr; 129499cafbc1SBarry Smith 129599cafbc1SBarry Smith PetscFunctionBegin; 129699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 129799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 129899cafbc1SBarry Smith PetscFunctionReturn(0); 129999cafbc1SBarry Smith } 130099cafbc1SBarry Smith 130199cafbc1SBarry Smith #undef __FUNCT__ 130299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 130399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 130499cafbc1SBarry Smith { 130599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 130699cafbc1SBarry Smith PetscErrorCode ierr; 130799cafbc1SBarry Smith 130899cafbc1SBarry Smith PetscFunctionBegin; 130999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 131099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 131199cafbc1SBarry Smith PetscFunctionReturn(0); 131299cafbc1SBarry Smith } 131399cafbc1SBarry Smith 131436032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 131536032a97SHong Zhang Input: isrow - distributed(parallel), 131636032a97SHong Zhang iscol_local - locally owned (seq) 131736032a97SHong Zhang */ 131899cafbc1SBarry Smith #undef __FUNCT__ 131936032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 132036032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13218f46ffcaSHong Zhang { 13228f46ffcaSHong Zhang PetscErrorCode ierr; 13238f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13248f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 132536032a97SHong Zhang 132636032a97SHong Zhang PetscFunctionBegin; 13278f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13288f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13291098a8e8SHong Zhang if (sz1 > sz2) { 13301098a8e8SHong Zhang *flg = PETSC_FALSE; 13311098a8e8SHong Zhang PetscFunctionReturn(0); 13321098a8e8SHong Zhang } 13338f46ffcaSHong Zhang 13348f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13358f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13368f46ffcaSHong Zhang 13378f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13388f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 13398f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 13408f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 13418f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13428f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13438f46ffcaSHong Zhang 13448f46ffcaSHong Zhang nmatch=0; 13458f46ffcaSHong Zhang k = 0; 13468f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13478f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13488f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13498f46ffcaSHong Zhang k = j; nmatch++; 13508f46ffcaSHong Zhang break; 13518f46ffcaSHong Zhang } 13528f46ffcaSHong Zhang } 13538f46ffcaSHong Zhang } 13548f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13558f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13568f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 13578f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 13581098a8e8SHong Zhang if (nmatch < sz1) { 13591098a8e8SHong Zhang *flg = PETSC_FALSE; 13601098a8e8SHong Zhang } else { 13611098a8e8SHong Zhang *flg = PETSC_TRUE; 13621098a8e8SHong Zhang } 136336032a97SHong Zhang PetscFunctionReturn(0); 13648f46ffcaSHong Zhang } 136536032a97SHong Zhang 136636032a97SHong Zhang #undef __FUNCT__ 136736032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 136836032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 136936032a97SHong Zhang { 137036032a97SHong Zhang PetscErrorCode ierr; 137136032a97SHong Zhang IS iscol_local; 137236032a97SHong Zhang PetscInt csize; 137336032a97SHong Zhang PetscBool isequal; 137436032a97SHong Zhang 137536032a97SHong Zhang PetscFunctionBegin; 137636032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 137736032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 137836032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 137936032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 138036032a97SHong Zhang } else { 138136032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 138236032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 138336032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 13848f46ffcaSHong Zhang } 13858f46ffcaSHong Zhang 13868f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 138736032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 13888f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 13898f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 13908f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 13918f46ffcaSHong Zhang } 13928f46ffcaSHong Zhang PetscFunctionReturn(0); 13938f46ffcaSHong Zhang } 13948f46ffcaSHong Zhang 13958f46ffcaSHong Zhang #undef __FUNCT__ 13964a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1397dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1398a30f8f8cSSatish Balay { 1399a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1400dfbe8321SBarry Smith PetscErrorCode ierr; 1401a30f8f8cSSatish Balay 1402a30f8f8cSSatish Balay PetscFunctionBegin; 1403a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1404a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1405a30f8f8cSSatish Balay PetscFunctionReturn(0); 1406a30f8f8cSSatish Balay } 1407a30f8f8cSSatish Balay 14084a2ae208SSatish Balay #undef __FUNCT__ 14094a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1410dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1411a30f8f8cSSatish Balay { 1412a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1413a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1414dfbe8321SBarry Smith PetscErrorCode ierr; 1415a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1416a30f8f8cSSatish Balay 1417a30f8f8cSSatish Balay PetscFunctionBegin; 1418d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141926fbe8dcSKarl Rupp 1420a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 142126fbe8dcSKarl Rupp 1422a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1423a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 142426fbe8dcSKarl Rupp 1425a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 142626fbe8dcSKarl Rupp 1427a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1428a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1429a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1430a30f8f8cSSatish Balay info->nz_used = isend[0]; 1431a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1432a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1433a30f8f8cSSatish Balay info->memory = isend[3]; 1434a30f8f8cSSatish Balay info->mallocs = isend[4]; 1435a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1436b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 143726fbe8dcSKarl Rupp 1438a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1439a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1440a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1441a30f8f8cSSatish Balay info->memory = irecv[3]; 1442a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1443a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1444b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 144526fbe8dcSKarl Rupp 1446a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1447a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1448a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1449a30f8f8cSSatish Balay info->memory = irecv[3]; 1450a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1451f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1452a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1453a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1454a30f8f8cSSatish Balay info->factor_mallocs = 0; 1455a30f8f8cSSatish Balay PetscFunctionReturn(0); 1456a30f8f8cSSatish Balay } 1457a30f8f8cSSatish Balay 14584a2ae208SSatish Balay #undef __FUNCT__ 14594a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1460ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1461a30f8f8cSSatish Balay { 1462a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1463d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1464dfbe8321SBarry Smith PetscErrorCode ierr; 1465a30f8f8cSSatish Balay 1466a30f8f8cSSatish Balay PetscFunctionBegin; 1467e98b92d7SKris Buschelman switch (op) { 1468512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1469e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1471a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1472e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147343674050SBarry Smith MatCheckPreallocated(A,1); 14744e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14754e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1476e98b92d7SKris Buschelman break; 1477e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 147843674050SBarry Smith MatCheckPreallocated(A,1); 14794e0d8c25SBarry Smith a->roworiented = flg; 148026fbe8dcSKarl Rupp 14814e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14824e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1483e98b92d7SKris Buschelman break; 14844e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1485290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1486e98b92d7SKris Buschelman break; 1487e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14884e0d8c25SBarry Smith a->donotstash = flg; 1489e98b92d7SKris Buschelman break; 1490e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 14914e0d8c25SBarry Smith a->ht_flag = flg; 1492e98b92d7SKris Buschelman break; 14939a4540c5SBarry Smith case MAT_HERMITIAN: 149443674050SBarry Smith MatCheckPreallocated(A,1); 1495e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1496eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 149726fbe8dcSKarl Rupp 1498547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1499eeffb40dSHong Zhang break; 1500ffa07934SHong Zhang case MAT_SPD: 1501ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1502ffa07934SHong Zhang A->spd = flg; 1503ffa07934SHong Zhang if (flg) { 1504ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1505ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1506ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1507ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1508ffa07934SHong Zhang } 1509ffa07934SHong Zhang break; 151077e54ba9SKris Buschelman case MAT_SYMMETRIC: 151143674050SBarry Smith MatCheckPreallocated(A,1); 1512eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1513eeffb40dSHong Zhang break; 151477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 151543674050SBarry Smith MatCheckPreallocated(A,1); 1516eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1517eeffb40dSHong Zhang break; 15189a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1519e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1520290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 152177e54ba9SKris Buschelman break; 1522d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15234e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1524d0d4cfc2SHong Zhang break; 1525d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15264e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1527d0d4cfc2SHong Zhang break; 1528d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15294e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1530d0d4cfc2SHong Zhang break; 1531e98b92d7SKris Buschelman default: 1532e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1533a30f8f8cSSatish Balay } 1534a30f8f8cSSatish Balay PetscFunctionReturn(0); 1535a30f8f8cSSatish Balay } 1536a30f8f8cSSatish Balay 15374a2ae208SSatish Balay #undef __FUNCT__ 15388115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1539fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1540a30f8f8cSSatish Balay { 1541dfbe8321SBarry Smith PetscErrorCode ierr; 15426e111a19SKarl Rupp 1543a30f8f8cSSatish Balay PetscFunctionBegin; 1544815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1545999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1546fc4dec0aSBarry Smith } 15478115998fSBarry Smith PetscFunctionReturn(0); 1548a30f8f8cSSatish Balay } 1549a30f8f8cSSatish Balay 15504a2ae208SSatish Balay #undef __FUNCT__ 15514a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1552dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1553a30f8f8cSSatish Balay { 1554a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1555a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1556dfbe8321SBarry Smith PetscErrorCode ierr; 15575e90f9d9SHong Zhang PetscInt nv,m,n; 1558ace3abfcSBarry Smith PetscBool flg; 1559a30f8f8cSSatish Balay 1560a30f8f8cSSatish Balay PetscFunctionBegin; 1561a30f8f8cSSatish Balay if (ll != rr) { 1562b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1563e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1564a30f8f8cSSatish Balay } 1565b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1566b3bf805bSHong Zhang 15675e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1568e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1569b3bf805bSHong Zhang 15705e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1571e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15725e90f9d9SHong Zhang 1573ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15745e90f9d9SHong Zhang 15755e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 15760298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 15775e90f9d9SHong Zhang 15785e90f9d9SHong Zhang /* scale the diagonal part */ 1579a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1580a30f8f8cSSatish Balay 15815e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1582ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15830298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1584a30f8f8cSSatish Balay PetscFunctionReturn(0); 1585a30f8f8cSSatish Balay } 1586a30f8f8cSSatish Balay 15874a2ae208SSatish Balay #undef __FUNCT__ 15884a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1589dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1590a30f8f8cSSatish Balay { 1591f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1592dfbe8321SBarry Smith PetscErrorCode ierr; 1593a30f8f8cSSatish Balay 1594a30f8f8cSSatish Balay PetscFunctionBegin; 1595a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1596a30f8f8cSSatish Balay PetscFunctionReturn(0); 1597a30f8f8cSSatish Balay } 1598a30f8f8cSSatish Balay 15996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1600a30f8f8cSSatish Balay 16014a2ae208SSatish Balay #undef __FUNCT__ 16024a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1603ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1604a30f8f8cSSatish Balay { 1605a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1606a30f8f8cSSatish Balay Mat a,b,c,d; 1607ace3abfcSBarry Smith PetscBool flg; 1608dfbe8321SBarry Smith PetscErrorCode ierr; 1609a30f8f8cSSatish Balay 1610a30f8f8cSSatish Balay PetscFunctionBegin; 1611a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1612a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1613a30f8f8cSSatish Balay 1614a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1615abc0a331SBarry Smith if (flg) { 1616a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1617a30f8f8cSSatish Balay } 1618b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1619a30f8f8cSSatish Balay PetscFunctionReturn(0); 1620a30f8f8cSSatish Balay } 1621a30f8f8cSSatish Balay 16224a2ae208SSatish Balay #undef __FUNCT__ 16233c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 16243c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16253c896bc6SHong Zhang { 16263c896bc6SHong Zhang PetscErrorCode ierr; 16273c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16283c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16293c896bc6SHong Zhang 16303c896bc6SHong Zhang PetscFunctionBegin; 16313c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16323c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1633d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16343c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1635d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16363c896bc6SHong Zhang } else { 16373c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16383c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16393c896bc6SHong Zhang } 16403c896bc6SHong Zhang PetscFunctionReturn(0); 16413c896bc6SHong Zhang } 16423c896bc6SHong Zhang 16433c896bc6SHong Zhang #undef __FUNCT__ 16444994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 16454994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1646273d9f13SBarry Smith { 1647dfbe8321SBarry Smith PetscErrorCode ierr; 1648273d9f13SBarry Smith 1649273d9f13SBarry Smith PetscFunctionBegin; 1650535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1651273d9f13SBarry Smith PetscFunctionReturn(0); 1652273d9f13SBarry Smith } 1653a5e6ed63SBarry Smith 16544fe895cdSHong Zhang #undef __FUNCT__ 16554fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 16564fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16574fe895cdSHong Zhang { 16584fe895cdSHong Zhang PetscErrorCode ierr; 16594fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16604fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16614fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16624fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16634fe895cdSHong Zhang 16644fe895cdSHong Zhang PetscFunctionBegin; 16654fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16664fe895cdSHong Zhang PetscScalar alpha = a; 16674fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16684fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1669c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 16708b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16714fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16724fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1673c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 16748b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1675a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1676ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1677ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1678ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1679ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 16804fe895cdSHong Zhang } else { 16814de5dceeSHong Zhang Mat B; 16824de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 16834de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1684d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 16854de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 16864de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 16874de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 16884de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 16894de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 16904de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 16914de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 16924de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 16934de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 16944de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 16954de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 16964de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 169728be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 16984de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 16994de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1700d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17014de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17024fe895cdSHong Zhang } 17034fe895cdSHong Zhang PetscFunctionReturn(0); 17044fe895cdSHong Zhang } 17054fe895cdSHong Zhang 1706a5e6ed63SBarry Smith #undef __FUNCT__ 1707a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 17081302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1709a5e6ed63SBarry Smith { 17106849ba73SBarry Smith PetscErrorCode ierr; 17111302d50aSBarry Smith PetscInt i; 171268906dc2SToby Isaac PetscBool flg,sorted; 1713a5e6ed63SBarry Smith 17146849ba73SBarry Smith PetscFunctionBegin; 171568906dc2SToby Isaac for (i = 0; i < n; i++) { 171668906dc2SToby Isaac ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr); 171768906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i); 171868906dc2SToby Isaac ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr); 171968906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i); 172068906dc2SToby Isaac } 17214dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1722a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1723a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 17244dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 17254dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1726a5e6ed63SBarry Smith } 17274dcd73b1SHong Zhang } 1728a5e6ed63SBarry Smith PetscFunctionReturn(0); 1729a5e6ed63SBarry Smith } 1730a5e6ed63SBarry Smith 17317d68702bSBarry Smith #undef __FUNCT__ 17327d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ" 17337d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17347d68702bSBarry Smith { 17357d68702bSBarry Smith PetscErrorCode ierr; 17367d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17376f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17387d68702bSBarry Smith 17397d68702bSBarry Smith PetscFunctionBegin; 17406f33a894SBarry Smith if (!Y->preallocated) { 17417d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17426f33a894SBarry Smith } else if (!aij->nz) { 1743b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17446f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1745b83222d8SBarry Smith aij->nonew = nonew; 17467d68702bSBarry Smith } 17477d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17487d68702bSBarry Smith PetscFunctionReturn(0); 17497d68702bSBarry Smith } 17507d68702bSBarry Smith 17513b49f96aSBarry Smith #undef __FUNCT__ 17523b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ" 17533b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 17543b49f96aSBarry Smith { 17553b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17563b49f96aSBarry Smith PetscErrorCode ierr; 17573b49f96aSBarry Smith 17583b49f96aSBarry Smith PetscFunctionBegin; 17593b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 17603b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 17613b49f96aSBarry Smith if (d) { 17623b49f96aSBarry Smith PetscInt rstart; 17633b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 17643b49f96aSBarry Smith *d += rstart/A->rmap->bs; 17653b49f96aSBarry Smith 17663b49f96aSBarry Smith } 17673b49f96aSBarry Smith PetscFunctionReturn(0); 17683b49f96aSBarry Smith } 17693b49f96aSBarry Smith 17703b49f96aSBarry Smith 1771a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17723964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1773a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1774a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1775a9d4b620SHong Zhang MatMult_MPISBAIJ, 177697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1777431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1778431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1779a30f8f8cSSatish Balay 0, 1780a30f8f8cSSatish Balay 0, 1781a30f8f8cSSatish Balay 0, 178297304618SKris Buschelman /* 10*/ 0, 1783a30f8f8cSSatish Balay 0, 1784a30f8f8cSSatish Balay 0, 178541f059aeSBarry Smith MatSOR_MPISBAIJ, 1786a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 178797304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1788a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1789a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1790a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1791a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 179297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1793a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1794a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1795a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1796d519adbfSMatthew Knepley /* 24*/ 0, 1797a30f8f8cSSatish Balay 0, 1798a30f8f8cSSatish Balay 0, 1799a30f8f8cSSatish Balay 0, 1800a30f8f8cSSatish Balay 0, 18014994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1802b5df2d14SHong Zhang 0, 1803a30f8f8cSSatish Balay 0, 1804a30f8f8cSSatish Balay 0, 1805a30f8f8cSSatish Balay 0, 1806d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1807a30f8f8cSSatish Balay 0, 1808a30f8f8cSSatish Balay 0, 1809a30f8f8cSSatish Balay 0, 1810a30f8f8cSSatish Balay 0, 1811d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1812a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1813d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1814a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18153c896bc6SHong Zhang MatCopy_MPISBAIJ, 1816d519adbfSMatthew Knepley /* 44*/ 0, 1817a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18187d68702bSBarry Smith MatShift_MPISBAIJ, 1819a30f8f8cSSatish Balay 0, 1820a30f8f8cSSatish Balay 0, 1821f73d5cc4SBarry Smith /* 49*/ 0, 1822a30f8f8cSSatish Balay 0, 1823a30f8f8cSSatish Balay 0, 1824a30f8f8cSSatish Balay 0, 1825a30f8f8cSSatish Balay 0, 1826d519adbfSMatthew Knepley /* 54*/ 0, 1827a30f8f8cSSatish Balay 0, 1828a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1829a30f8f8cSSatish Balay 0, 1830a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18318f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1832a30f8f8cSSatish Balay 0, 1833a30f8f8cSSatish Balay 0, 1834357abbc8SBarry Smith 0, 183524d5174aSHong Zhang 0, 1836d519adbfSMatthew Knepley /* 64*/ 0, 183724d5174aSHong Zhang 0, 183824d5174aSHong Zhang 0, 183924d5174aSHong Zhang 0, 184024d5174aSHong Zhang 0, 1841d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 184224d5174aSHong Zhang 0, 184397304618SKris Buschelman 0, 184497304618SKris Buschelman 0, 184597304618SKris Buschelman 0, 1846d519adbfSMatthew Knepley /* 74*/ 0, 184797304618SKris Buschelman 0, 184897304618SKris Buschelman 0, 184997304618SKris Buschelman 0, 185097304618SKris Buschelman 0, 1851d519adbfSMatthew Knepley /* 79*/ 0, 185297304618SKris Buschelman 0, 185397304618SKris Buschelman 0, 185497304618SKris Buschelman 0, 18555bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1856d519adbfSMatthew Knepley /* 84*/ 0, 1857865e5f61SKris Buschelman 0, 1858865e5f61SKris Buschelman 0, 1859865e5f61SKris Buschelman 0, 1860865e5f61SKris Buschelman 0, 1861d519adbfSMatthew Knepley /* 89*/ 0, 1862865e5f61SKris Buschelman 0, 1863865e5f61SKris Buschelman 0, 1864865e5f61SKris Buschelman 0, 1865865e5f61SKris Buschelman 0, 1866d519adbfSMatthew Knepley /* 94*/ 0, 1867865e5f61SKris Buschelman 0, 1868865e5f61SKris Buschelman 0, 186999cafbc1SBarry Smith 0, 187099cafbc1SBarry Smith 0, 1871d519adbfSMatthew Knepley /* 99*/ 0, 187299cafbc1SBarry Smith 0, 187399cafbc1SBarry Smith 0, 187499cafbc1SBarry Smith 0, 187599cafbc1SBarry Smith 0, 1876d519adbfSMatthew Knepley /*104*/ 0, 187799cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1878d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1879d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 188095936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 188195936485SShri Abhyankar /*109*/ 0, 188295936485SShri Abhyankar 0, 188395936485SShri Abhyankar 0, 188495936485SShri Abhyankar 0, 18853b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 188695936485SShri Abhyankar /*114*/ 0, 188795936485SShri Abhyankar 0, 188895936485SShri Abhyankar 0, 188995936485SShri Abhyankar 0, 189095936485SShri Abhyankar 0, 189195936485SShri Abhyankar /*119*/ 0, 189295936485SShri Abhyankar 0, 189395936485SShri Abhyankar 0, 18943964eb88SJed Brown 0, 18953964eb88SJed Brown 0, 18963964eb88SJed Brown /*124*/ 0, 18973964eb88SJed Brown 0, 18983964eb88SJed Brown 0, 18993964eb88SJed Brown 0, 19003964eb88SJed Brown 0, 19013964eb88SJed Brown /*129*/ 0, 19023964eb88SJed Brown 0, 19033964eb88SJed Brown 0, 19043964eb88SJed Brown 0, 19053964eb88SJed Brown 0, 19063964eb88SJed Brown /*134*/ 0, 19073964eb88SJed Brown 0, 19083964eb88SJed Brown 0, 19093964eb88SJed Brown 0, 19103964eb88SJed Brown 0, 19113964eb88SJed Brown /*139*/ 0, 1912f9426fe0SMark Adams 0, 191359f5e6ceSHong Zhang 0, 191459f5e6ceSHong Zhang 0, 191559f5e6ceSHong Zhang 0, 191659f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 191799cafbc1SBarry Smith }; 1918a30f8f8cSSatish Balay 19194a2ae208SSatish Balay #undef __FUNCT__ 19204a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 192111bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1922a30f8f8cSSatish Balay { 1923a30f8f8cSSatish Balay PetscFunctionBegin; 1924a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1925a30f8f8cSSatish Balay PetscFunctionReturn(0); 1926a30f8f8cSSatish Balay } 1927a30f8f8cSSatish Balay 19284a2ae208SSatish Balay #undef __FUNCT__ 1929a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1930b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1931a23d5eceSKris Buschelman { 1932a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1933dfbe8321SBarry Smith PetscErrorCode ierr; 1934535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1935a23d5eceSKris Buschelman 1936a23d5eceSKris Buschelman PetscFunctionBegin; 193733d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 193826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 193926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1940e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1941899cda47SBarry Smith 1942a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1943d0f46423SBarry Smith mbs = B->rmap->n/bs; 1944d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1945c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1946a23d5eceSKris Buschelman 1947d0f46423SBarry Smith B->rmap->bs = bs; 1948a23d5eceSKris Buschelman b->bs2 = bs*bs; 1949a23d5eceSKris Buschelman b->mbs = mbs; 1950a23d5eceSKris Buschelman b->Mbs = Mbs; 1951de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1952de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1953a23d5eceSKris Buschelman 1954a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1955d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1956a23d5eceSKris Buschelman } 1957d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1958d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1959a23d5eceSKris Buschelman 1960d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1961d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1962a23d5eceSKris Buschelman 1963526dfc15SBarry Smith if (!B->preallocated) { 1964f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1965d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 19669c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 19673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1968f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1969d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 19704aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 19713bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1972ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1973526dfc15SBarry Smith } 1974a23d5eceSKris Buschelman 1975526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1976526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 197726fbe8dcSKarl Rupp 1978526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1979a23d5eceSKris Buschelman PetscFunctionReturn(0); 1980a23d5eceSKris Buschelman } 1981a23d5eceSKris Buschelman 1982dfb205c3SBarry Smith #undef __FUNCT__ 1983dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1984dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1985dfb205c3SBarry Smith { 1986dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1987dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1988dfb205c3SBarry Smith const PetscInt *JJ =0; 1989dfb205c3SBarry Smith PetscScalar *values=0; 1990dfb205c3SBarry Smith PetscErrorCode ierr; 1991dfb205c3SBarry Smith 1992dfb205c3SBarry Smith PetscFunctionBegin; 1993ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1994dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1995dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1996dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1997dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1998e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1999dfb205c3SBarry Smith m = B->rmap->n/bs; 2000dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2001dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 2002dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2003dfb205c3SBarry Smith 2004dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2005dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2006dfb205c3SBarry Smith for (i=0; i<m; i++) { 2007dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2008dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2009dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 2010dfb205c3SBarry Smith JJ = jj + ii[i]; 2011dfb205c3SBarry Smith for (j=0; j<nz; j++) { 2012dfb205c3SBarry Smith if (*JJ >= cstart) break; 2013dfb205c3SBarry Smith JJ++; 2014dfb205c3SBarry Smith } 2015dfb205c3SBarry Smith d = 0; 2016dfb205c3SBarry Smith for (; j<nz; j++) { 2017dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2018dfb205c3SBarry Smith d++; 2019dfb205c3SBarry Smith } 2020dfb205c3SBarry Smith d_nnz[i] = d; 2021dfb205c3SBarry Smith o_nnz[i] = nz - d; 2022dfb205c3SBarry Smith } 2023dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2024dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2025dfb205c3SBarry Smith 2026dfb205c3SBarry Smith values = (PetscScalar*)V; 2027dfb205c3SBarry Smith if (!values) { 2028785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2029dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2030dfb205c3SBarry Smith } 2031dfb205c3SBarry Smith for (i=0; i<m; i++) { 2032dfb205c3SBarry Smith PetscInt row = i + rstart; 2033dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2034dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2035dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2036dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2037dfb205c3SBarry Smith } 2038dfb205c3SBarry Smith 2039dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2040dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2041dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20427827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2043dfb205c3SBarry Smith PetscFunctionReturn(0); 2044dfb205c3SBarry Smith } 2045dfb205c3SBarry Smith 20460bad9183SKris Buschelman /*MC 2047fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2048828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2049828413b8SBarry Smith the matrix is stored. 2050828413b8SBarry Smith 2051828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2052828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20530bad9183SKris Buschelman 20540bad9183SKris Buschelman Options Database Keys: 20550bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20560bad9183SKris Buschelman 20570bad9183SKris Buschelman Level: beginner 20580bad9183SKris Buschelman 20590bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 20600bad9183SKris Buschelman M*/ 20610bad9183SKris Buschelman 2062*cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2063aa5a9175SDahai Guo 2064a23d5eceSKris Buschelman #undef __FUNCT__ 20654a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 20668cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2067b5df2d14SHong Zhang { 2068b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2069dfbe8321SBarry Smith PetscErrorCode ierr; 207094ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2071b5df2d14SHong Zhang 2072b5df2d14SHong Zhang PetscFunctionBegin; 2073b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2074b0a32e0cSBarry Smith B->data = (void*)b; 2075b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2076b5df2d14SHong Zhang 2077b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2078b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2079b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2080b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 208126fbe8dcSKarl Rupp 2082ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2083ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2084b5df2d14SHong Zhang 2085b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2086854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2087b5df2d14SHong Zhang 2088b5df2d14SHong Zhang /* build cache for off array entries formed */ 2089ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 209026fbe8dcSKarl Rupp 2091b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20920298fd71SBarry Smith b->colmap = NULL; 20930298fd71SBarry Smith b->garray = NULL; 2094b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2095b5df2d14SHong Zhang 2096b5df2d14SHong Zhang /* stuff used in block assembly */ 2097b5df2d14SHong Zhang b->barray = 0; 2098b5df2d14SHong Zhang 2099b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2100b5df2d14SHong Zhang b->lvec = 0; 2101b5df2d14SHong Zhang b->Mvctx = 0; 210240781036SHong Zhang b->slvec0 = 0; 210340781036SHong Zhang b->slvec0b = 0; 210440781036SHong Zhang b->slvec1 = 0; 210540781036SHong Zhang b->slvec1a = 0; 210640781036SHong Zhang b->slvec1b = 0; 210740781036SHong Zhang b->sMvctx = 0; 2108b5df2d14SHong Zhang 2109b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2110b5df2d14SHong Zhang b->rowindices = 0; 2111b5df2d14SHong Zhang b->rowvalues = 0; 2112b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2113b5df2d14SHong Zhang 2114b5df2d14SHong Zhang /* hash table stuff */ 2115b5df2d14SHong Zhang b->ht = 0; 2116b5df2d14SHong Zhang b->hd = 0; 2117b5df2d14SHong Zhang b->ht_size = 0; 2118b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2119b5df2d14SHong Zhang b->ht_fact = 0; 2120b5df2d14SHong Zhang b->ht_total_ct = 0; 2121b5df2d14SHong Zhang b->ht_insert_ct = 0; 2122b5df2d14SHong Zhang 21237a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 21247a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21257a868f3eSHong Zhang 212659ffdab8SBarry Smith b->in_loc = 0; 212759ffdab8SBarry Smith b->v_loc = 0; 212859ffdab8SBarry Smith b->n_loc = 0; 212994ae4db5SBarry Smith 2130bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2131bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2132bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 2133bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2134bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 2135bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 21366214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21376214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21386214f412SHong Zhang #endif 2139aa5a9175SDahai Guo 214023ce1328SBarry Smith B->symmetric = PETSC_TRUE; 214123ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 214223ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 214323ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 214426fbe8dcSKarl Rupp 214517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 214694ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 214794ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 214894ae4db5SBarry Smith if (flg) { 214994ae4db5SBarry Smith PetscReal fact = 1.39; 215094ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 215194ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 215294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 215394ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 215494ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 215594ae4db5SBarry Smith } 215694ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2157b5df2d14SHong Zhang PetscFunctionReturn(0); 2158b5df2d14SHong Zhang } 2159b5df2d14SHong Zhang 2160209238afSKris Buschelman /*MC 2161002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2162209238afSKris Buschelman 2163209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2164209238afSKris Buschelman and MATMPISBAIJ otherwise. 2165209238afSKris Buschelman 2166209238afSKris Buschelman Options Database Keys: 2167209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2168209238afSKris Buschelman 2169209238afSKris Buschelman Level: beginner 2170209238afSKris Buschelman 2171209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2172209238afSKris Buschelman M*/ 2173209238afSKris Buschelman 21744a2ae208SSatish Balay #undef __FUNCT__ 21754a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 2176b5df2d14SHong Zhang /*@C 2177b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2178b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2179b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2180b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2181b5df2d14SHong Zhang 2182b5df2d14SHong Zhang Collective on Mat 2183b5df2d14SHong Zhang 2184b5df2d14SHong Zhang Input Parameters: 21851c4f3114SJed Brown + B - the matrix 2186bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2187bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2188b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2189b5df2d14SHong Zhang submatrix (same for all local rows) 2190b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 21916d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 21920298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 219395742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2194b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2195b5df2d14SHong Zhang submatrix (same for all local rows). 2196b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2197c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 21980298fd71SBarry Smith (possibly different for each block row) or NULL. 2199b5df2d14SHong Zhang 2200b5df2d14SHong Zhang 2201b5df2d14SHong Zhang Options Database Keys: 2202b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2203b5df2d14SHong Zhang block calculations (much slower) 2204b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2205b5df2d14SHong Zhang 2206b5df2d14SHong Zhang Notes: 2207b5df2d14SHong Zhang 2208b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2209b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2210b5df2d14SHong Zhang 221149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 221249a6f317SBarry Smith 2213b5df2d14SHong Zhang Storage Information: 2214b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2215b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2216b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2217b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2218b5df2d14SHong Zhang 2219b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2220b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22210298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2222b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2223b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2224b5df2d14SHong Zhang 2225aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2226aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2227aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2228aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2229aa95bbe8SBarry Smith 2230b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2231b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2232b5df2d14SHong Zhang 2233b5df2d14SHong Zhang .vb 2234b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2235a4b1a0f6SJed Brown -------------------------- 2236c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2237c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2238c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2239a4b1a0f6SJed Brown -------------------------- 2240b5df2d14SHong Zhang .ve 2241b5df2d14SHong Zhang 2242b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2243b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22446d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22456d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2246b5df2d14SHong Zhang 22476d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22486d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2249c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2250c2fc9fa9SBarry Smith 2251b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2252b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2253b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2254b5df2d14SHong Zhang matrices. 2255b5df2d14SHong Zhang 2256b5df2d14SHong Zhang Level: intermediate 2257b5df2d14SHong Zhang 2258b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2259b5df2d14SHong Zhang 2260ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2261b5df2d14SHong Zhang @*/ 22627087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2263b5df2d14SHong Zhang { 22644ac538c5SBarry Smith PetscErrorCode ierr; 2265b5df2d14SHong Zhang 2266b5df2d14SHong Zhang PetscFunctionBegin; 22676ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22686ba663aaSJed Brown PetscValidType(B,1); 22696ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 22704ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2271b5df2d14SHong Zhang PetscFunctionReturn(0); 2272b5df2d14SHong Zhang } 2273b5df2d14SHong Zhang 22744a2ae208SSatish Balay #undef __FUNCT__ 227569b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2276a30f8f8cSSatish Balay /*@C 227769b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2278a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2279a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2280a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2281a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2282a30f8f8cSSatish Balay 2283a30f8f8cSSatish Balay Collective on MPI_Comm 2284a30f8f8cSSatish Balay 2285a30f8f8cSSatish Balay Input Parameters: 2286a30f8f8cSSatish Balay + comm - MPI communicator 2287bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2288bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2289a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2290a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2291a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2292a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2293a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2294a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2295a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2296a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2297a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2298a30f8f8cSSatish Balay submatrix (same for all local rows) 2299a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23006d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23010298fd71SBarry Smith (possibly different for each block block row) or NULL. 230295742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 230395742e49SBarry Smith set its value even if it is zero. 2304a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2305a30f8f8cSSatish Balay submatrix (same for all local rows). 2306a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2307a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23080298fd71SBarry Smith each block row) or NULL. 2309a30f8f8cSSatish Balay 2310a30f8f8cSSatish Balay Output Parameter: 2311a30f8f8cSSatish Balay . A - the matrix 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay Options Database Keys: 2314a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2315a30f8f8cSSatish Balay block calculations (much slower) 2316a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2317a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2318a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2319a30f8f8cSSatish Balay 2320175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2321ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2322175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2323175b88e8SBarry Smith 2324a30f8f8cSSatish Balay Notes: 2325d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23266d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2327d1be2dadSMatthew Knepley 2328a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2329a30f8f8cSSatish Balay (possibly both). 2330a30f8f8cSSatish Balay 2331a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2332a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2333a30f8f8cSSatish Balay 233449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 233549a6f317SBarry Smith 2336a30f8f8cSSatish Balay Storage Information: 2337a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2338a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2339a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2340a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2341a30f8f8cSSatish Balay 2342a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2343a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23440298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2345a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2346a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2347a30f8f8cSSatish Balay 2348a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2349a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2350a30f8f8cSSatish Balay 2351a30f8f8cSSatish Balay .vb 2352a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2353a4b1a0f6SJed Brown -------------------------- 2354c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2355c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2356c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2357a4b1a0f6SJed Brown -------------------------- 2358a30f8f8cSSatish Balay .ve 2359a30f8f8cSSatish Balay 2360a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2361a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23626d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23636d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2364a30f8f8cSSatish Balay 23656d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23666d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2367a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2368a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2369a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2370a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2371a30f8f8cSSatish Balay matrices. 2372a30f8f8cSSatish Balay 2373a30f8f8cSSatish Balay Level: intermediate 2374a30f8f8cSSatish Balay 2375a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2376a30f8f8cSSatish Balay 237769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2378a30f8f8cSSatish Balay @*/ 2379a30f8f8cSSatish Balay 238069b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2381a30f8f8cSSatish Balay { 23826849ba73SBarry Smith PetscErrorCode ierr; 23831302d50aSBarry Smith PetscMPIInt size; 2384a30f8f8cSSatish Balay 2385a30f8f8cSSatish Balay PetscFunctionBegin; 2386f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2387f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2388273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2389273d9f13SBarry Smith if (size > 1) { 2390b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2391b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2392273d9f13SBarry Smith } else { 2393273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2394273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2395273d9f13SBarry Smith } 2396a30f8f8cSSatish Balay PetscFunctionReturn(0); 2397a30f8f8cSSatish Balay } 2398a30f8f8cSSatish Balay 2399a30f8f8cSSatish Balay 24004a2ae208SSatish Balay #undef __FUNCT__ 24014a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 24026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2403a30f8f8cSSatish Balay { 2404a30f8f8cSSatish Balay Mat mat; 2405a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2406dfbe8321SBarry Smith PetscErrorCode ierr; 2407d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2408387bc808SHong Zhang PetscScalar *array; 2409a30f8f8cSSatish Balay 2410a30f8f8cSSatish Balay PetscFunctionBegin; 2411a30f8f8cSSatish Balay *newmat = 0; 241226fbe8dcSKarl Rupp 2413ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2414d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 24157adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24161d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 24171e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 24181e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2419e1b6402fSHong Zhang 2420d5f3da31SBarry Smith mat->factortype = matin->factortype; 2421273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 242282327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24237fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24247fff6886SHong Zhang 2425b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2426a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2427a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2428a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2429a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2430a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2431a30f8f8cSSatish Balay 2432899cda47SBarry Smith 2433a30f8f8cSSatish Balay a->size = oldmat->size; 2434a30f8f8cSSatish Balay a->rank = oldmat->rank; 2435a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2436a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2437a30f8f8cSSatish Balay a->rowindices = 0; 2438a30f8f8cSSatish Balay a->rowvalues = 0; 2439a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2440a30f8f8cSSatish Balay a->barray = 0; 2441899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2442899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2443899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2444899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2445a30f8f8cSSatish Balay 2446a30f8f8cSSatish Balay /* hash table stuff */ 2447a30f8f8cSSatish Balay a->ht = 0; 2448a30f8f8cSSatish Balay a->hd = 0; 2449a30f8f8cSSatish Balay a->ht_size = 0; 2450a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2451a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2452a30f8f8cSSatish Balay a->ht_total_ct = 0; 2453a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2454a30f8f8cSSatish Balay 2455899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2456a30f8f8cSSatish Balay if (oldmat->colmap) { 2457a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2458a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2459a30f8f8cSSatish Balay #else 2460854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 24613bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 24621302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2463a30f8f8cSSatish Balay #endif 2464a30f8f8cSSatish Balay } else a->colmap = 0; 2465387bc808SHong Zhang 2466a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2467785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 24683bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 24691302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2470a30f8f8cSSatish Balay } else a->garray = 0; 2471a30f8f8cSSatish Balay 2472ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2473a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 24743bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2475a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 24763bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 247782327fa8SHong Zhang 247882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 24793bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 248082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 24813bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2482387bc808SHong Zhang 2483387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 24841ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2485778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2486778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 24871ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 24881ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2489778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 24901ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 24913bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 24923bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 24933bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 24943bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 24953bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2496387bc808SHong Zhang 2497387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2498387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2499387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 25003bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 250182327fa8SHong Zhang 2502a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25033bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2504a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 25053bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2506140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2507a30f8f8cSSatish Balay *newmat = mat; 2508a30f8f8cSSatish Balay PetscFunctionReturn(0); 2509a30f8f8cSSatish Balay } 2510a30f8f8cSSatish Balay 25114a2ae208SSatish Balay #undef __FUNCT__ 25125bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2513112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 251495936485SShri Abhyankar { 251595936485SShri Abhyankar PetscErrorCode ierr; 251695936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 251795936485SShri Abhyankar PetscScalar *vals,*buf; 2518ce94432eSBarry Smith MPI_Comm comm; 251995936485SShri Abhyankar MPI_Status status; 2520adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2521adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 252295936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 25233059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 252495936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2525461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 252695936485SShri Abhyankar int fd; 252795936485SShri Abhyankar 252895936485SShri Abhyankar PetscFunctionBegin; 2529c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2530c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2531ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 25320298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 25330298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 253495936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 25353059b6faSBarry Smith if (bs < 0) bs = 1; 253695936485SShri Abhyankar 253795936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 253895936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 253995936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 25405872f025SBarry Smith if (!rank) { 254195936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 254295936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 254395936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 254495936485SShri Abhyankar } 254595936485SShri Abhyankar 254695936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 254726fbe8dcSKarl Rupp M = header[1]; 254826fbe8dcSKarl Rupp N = header[2]; 254995936485SShri Abhyankar 255095936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2551461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2552461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 255395936485SShri Abhyankar 255495936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 255595936485SShri Abhyankar 255695936485SShri Abhyankar /* 255795936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 255895936485SShri Abhyankar divisible by the blocksize 255995936485SShri Abhyankar */ 256095936485SShri Abhyankar Mbs = M/bs; 256195936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 256295936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 256395936485SShri Abhyankar else Mbs++; 256495936485SShri Abhyankar if (extra_rows &&!rank) { 256595936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 256695936485SShri Abhyankar } 256795936485SShri Abhyankar 256895936485SShri Abhyankar /* determine ownership of all rows */ 256995936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 257095936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 257195936485SShri Abhyankar m = mbs*bs; 257295936485SShri Abhyankar } else { /* User Set */ 257395936485SShri Abhyankar m = newmat->rmap->n; 257495936485SShri Abhyankar mbs = m/bs; 257595936485SShri Abhyankar } 2576dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 25774dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 257895936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 257995936485SShri Abhyankar rowners[0] = 0; 258095936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 258195936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 258295936485SShri Abhyankar rstart = rowners[rank]; 258395936485SShri Abhyankar rend = rowners[rank+1]; 258495936485SShri Abhyankar 258595936485SShri Abhyankar /* distribute row lengths to all processors */ 2586785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 258795936485SShri Abhyankar if (!rank) { 2588854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 258995936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 259095936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2591785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 259295936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 259395936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 259495936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 259595936485SShri Abhyankar } else { 259695936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 259795936485SShri Abhyankar } 259895936485SShri Abhyankar 259995936485SShri Abhyankar if (!rank) { /* procs[0] */ 260095936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2601785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 260295936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 260395936485SShri Abhyankar for (i=0; i<size; i++) { 260495936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 260595936485SShri Abhyankar procsnz[i] += rowlengths[j]; 260695936485SShri Abhyankar } 260795936485SShri Abhyankar } 260895936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 260995936485SShri Abhyankar 261095936485SShri Abhyankar /* determine max buffer needed and allocate it */ 261195936485SShri Abhyankar maxnz = 0; 261295936485SShri Abhyankar for (i=0; i<size; i++) { 261395936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 261495936485SShri Abhyankar } 2615785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 261695936485SShri Abhyankar 261795936485SShri Abhyankar /* read in my part of the matrix column indices */ 261895936485SShri Abhyankar nz = procsnz[0]; 2619785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 262095936485SShri Abhyankar mycols = ibuf; 262195936485SShri Abhyankar if (size == 1) nz -= extra_rows; 262295936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 262326fbe8dcSKarl Rupp if (size == 1) { 262426fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 262526fbe8dcSKarl Rupp } 262695936485SShri Abhyankar 262795936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 262895936485SShri Abhyankar for (i=1; i<size-1; i++) { 262995936485SShri Abhyankar nz = procsnz[i]; 263095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 263195936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 263295936485SShri Abhyankar } 263395936485SShri Abhyankar /* read in the stuff for the last proc */ 263495936485SShri Abhyankar if (size != 1) { 263595936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 263695936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 263795936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 263895936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 263995936485SShri Abhyankar } 264095936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 264195936485SShri Abhyankar } else { /* procs[i], i>0 */ 264295936485SShri Abhyankar /* determine buffer space needed for message */ 264395936485SShri Abhyankar nz = 0; 264426fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2645785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 264695936485SShri Abhyankar mycols = ibuf; 264795936485SShri Abhyankar /* receive message of column indices*/ 264895936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 264995936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 265095936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 265195936485SShri Abhyankar } 265295936485SShri Abhyankar 265395936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2654dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2655dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 265695936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265795936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265895936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 265995936485SShri Abhyankar rowcount = 0; 266095936485SShri Abhyankar nzcount = 0; 266195936485SShri Abhyankar for (i=0; i<mbs; i++) { 266295936485SShri Abhyankar dcount = 0; 266395936485SShri Abhyankar odcount = 0; 266495936485SShri Abhyankar for (j=0; j<bs; j++) { 266595936485SShri Abhyankar kmax = locrowlens[rowcount]; 266695936485SShri Abhyankar for (k=0; k<kmax; k++) { 266795936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 266895936485SShri Abhyankar if (!mask[tmp]) { 266995936485SShri Abhyankar mask[tmp] = 1; 267095936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 267195936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 267295936485SShri Abhyankar } 267395936485SShri Abhyankar } 267495936485SShri Abhyankar rowcount++; 267595936485SShri Abhyankar } 267695936485SShri Abhyankar 267795936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 267895936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 267995936485SShri Abhyankar 268095936485SShri Abhyankar /* zero out the mask elements we set */ 268195936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 268295936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 268395936485SShri Abhyankar } 268495936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 268595936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 26866816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 268795936485SShri Abhyankar 268895936485SShri Abhyankar if (!rank) { 2689785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 269095936485SShri Abhyankar /* read in my part of the matrix numerical values */ 269195936485SShri Abhyankar nz = procsnz[0]; 269295936485SShri Abhyankar vals = buf; 269395936485SShri Abhyankar mycols = ibuf; 269495936485SShri Abhyankar if (size == 1) nz -= extra_rows; 269595936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 269626fbe8dcSKarl Rupp if (size == 1) { 269726fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 269826fbe8dcSKarl Rupp } 269995936485SShri Abhyankar 270095936485SShri Abhyankar /* insert into matrix */ 270195936485SShri Abhyankar jj = rstart*bs; 270295936485SShri Abhyankar for (i=0; i<m; i++) { 270395936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 270495936485SShri Abhyankar mycols += locrowlens[i]; 270595936485SShri Abhyankar vals += locrowlens[i]; 270695936485SShri Abhyankar jj++; 270795936485SShri Abhyankar } 270895936485SShri Abhyankar 270995936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 271095936485SShri Abhyankar for (i=1; i<size-1; i++) { 271195936485SShri Abhyankar nz = procsnz[i]; 271295936485SShri Abhyankar vals = buf; 271395936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 271495936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 271595936485SShri Abhyankar } 271695936485SShri Abhyankar /* the last proc */ 271795936485SShri Abhyankar if (size != 1) { 271895936485SShri Abhyankar nz = procsnz[i] - extra_rows; 271995936485SShri Abhyankar vals = buf; 272095936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 272195936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 272295936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 272395936485SShri Abhyankar } 272495936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 272595936485SShri Abhyankar 272695936485SShri Abhyankar } else { 272795936485SShri Abhyankar /* receive numeric values */ 2728785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 272995936485SShri Abhyankar 273095936485SShri Abhyankar /* receive message of values*/ 273195936485SShri Abhyankar vals = buf; 273295936485SShri Abhyankar mycols = ibuf; 273395936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 273495936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 273595936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 273695936485SShri Abhyankar 273795936485SShri Abhyankar /* insert into matrix */ 273895936485SShri Abhyankar jj = rstart*bs; 273995936485SShri Abhyankar for (i=0; i<m; i++) { 274095936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 274195936485SShri Abhyankar mycols += locrowlens[i]; 274295936485SShri Abhyankar vals += locrowlens[i]; 274395936485SShri Abhyankar jj++; 274495936485SShri Abhyankar } 274595936485SShri Abhyankar } 274695936485SShri Abhyankar 274795936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 274895936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 274995936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 275095936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 275195936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 275295936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 275395936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 275495936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 275595936485SShri Abhyankar PetscFunctionReturn(0); 275695936485SShri Abhyankar } 275795936485SShri Abhyankar 275895936485SShri Abhyankar #undef __FUNCT__ 27594a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2760dcf5cc72SBarry Smith /*XXXXX@ 2761a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2762a30f8f8cSSatish Balay 2763a30f8f8cSSatish Balay Input Parameters: 2764a30f8f8cSSatish Balay . mat - the matrix 2765a30f8f8cSSatish Balay . fact - factor 2766a30f8f8cSSatish Balay 2767c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2768a30f8f8cSSatish Balay 2769a30f8f8cSSatish Balay Level: advanced 2770a30f8f8cSSatish Balay 2771a30f8f8cSSatish Balay Notes: 2772a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2773a30f8f8cSSatish Balay 2774a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2775a30f8f8cSSatish Balay 2776a30f8f8cSSatish Balay .seealso: MatSetOption() 2777dcf5cc72SBarry Smith @XXXXX*/ 2778dcf5cc72SBarry Smith 277924d5174aSHong Zhang 27804a2ae208SSatish Balay #undef __FUNCT__ 2781985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2782985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 278324d5174aSHong Zhang { 278424d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2785f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2786ca54ac64SHong Zhang PetscReal atmp; 278787828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2788dfbe8321SBarry Smith PetscErrorCode ierr; 27891302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 27901302d50aSBarry Smith PetscMPIInt rank,size; 27911302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 279287828ca2SBarry Smith PetscScalar *va; 27938a1c53f2SBarry Smith MatScalar *ba; 2794f4c0e9e4SHong Zhang MPI_Status stat; 279524d5174aSHong Zhang 279624d5174aSHong Zhang PetscFunctionBegin; 2797e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 27980298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 27991ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2800f4c0e9e4SHong Zhang 2801ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2802ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2803f4c0e9e4SHong Zhang 2804d0f46423SBarry Smith bs = A->rmap->bs; 2805f4c0e9e4SHong Zhang mbs = a->mbs; 2806f4c0e9e4SHong Zhang Mbs = a->Mbs; 2807f4c0e9e4SHong Zhang ba = b->a; 2808f4c0e9e4SHong Zhang bi = b->i; 2809f4c0e9e4SHong Zhang bj = b->j; 2810f4c0e9e4SHong Zhang 2811f4c0e9e4SHong Zhang /* find ownerships */ 2812d0f46423SBarry Smith rowners_bs = A->rmap->range; 2813f4c0e9e4SHong Zhang 2814f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2815785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2816ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2817f4c0e9e4SHong Zhang 2818f4c0e9e4SHong Zhang /* row_max for B */ 2819b8475685SHong Zhang if (rank != size-1) { 2820f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2821f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2822f4c0e9e4SHong Zhang brow = bs*i; 2823f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2824f4c0e9e4SHong Zhang bcol = bs*(*bj); 2825f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2826ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 282704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2828f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2829f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2830ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2831ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2832f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2833f4c0e9e4SHong Zhang } 2834f4c0e9e4SHong Zhang } 2835f4c0e9e4SHong Zhang bj++; 2836f4c0e9e4SHong Zhang } 2837f4c0e9e4SHong Zhang } 2838f4c0e9e4SHong Zhang 2839f4c0e9e4SHong Zhang /* send values to its owners */ 2840f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2841f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2842ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2843ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2844ca54ac64SHong Zhang } 2845f4c0e9e4SHong Zhang } 2846f4c0e9e4SHong Zhang 2847f4c0e9e4SHong Zhang /* receive values */ 2848ca54ac64SHong Zhang if (rank) { 2849f4c0e9e4SHong Zhang rvalues = work; 2850ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2851f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2852ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2853f4c0e9e4SHong Zhang /* process values */ 2854f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2855ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2856f4c0e9e4SHong Zhang } 2857f4c0e9e4SHong Zhang } 2858ca54ac64SHong Zhang } 2859f4c0e9e4SHong Zhang 28601ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2861ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 286224d5174aSHong Zhang PetscFunctionReturn(0); 286324d5174aSHong Zhang } 28642798e883SHong Zhang 28652798e883SHong Zhang #undef __FUNCT__ 286641f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 286741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 28682798e883SHong Zhang { 28692798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2870dfbe8321SBarry Smith PetscErrorCode ierr; 2871d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 28723649974fSBarry Smith PetscScalar *x,*ptr,*from; 2873ffe4fb16SHong Zhang Vec bb1; 28743649974fSBarry Smith const PetscScalar *b; 2875ffe4fb16SHong Zhang 2876ffe4fb16SHong Zhang PetscFunctionBegin; 2877e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2878e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2879ffe4fb16SHong Zhang 2880a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 288141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2882a2b30743SBarry Smith PetscFunctionReturn(0); 2883a2b30743SBarry Smith } 2884a2b30743SBarry Smith 2885ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2886ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 288741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2888ffe4fb16SHong Zhang its--; 2889ffe4fb16SHong Zhang } 2890ffe4fb16SHong Zhang 2891ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2892ffe4fb16SHong Zhang while (its--) { 2893ffe4fb16SHong Zhang 2894ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2895ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2896ffe4fb16SHong Zhang 2897ffe4fb16SHong Zhang /* copy xx into slvec0a */ 28981ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 28991ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2900ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 29011ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2902ffe4fb16SHong Zhang 2903efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2904ffe4fb16SHong Zhang 2905ffe4fb16SHong Zhang /* copy bb into slvec1a */ 29061ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 29073649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2908ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 29091ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2910ffe4fb16SHong Zhang 2911ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2912fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2913ffe4fb16SHong Zhang 2914ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 29151ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2916a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2917ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2918ffe4fb16SHong Zhang 2919ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2920ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2921ffe4fb16SHong Zhang 2922ffe4fb16SHong Zhang /* local diagonal sweep */ 292341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2924ffe4fb16SHong Zhang } 29256bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2926fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 292741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2928fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 292941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2930fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2931fa22f6d0SBarry Smith Vec xx1; 2932ace3abfcSBarry Smith PetscBool hasop; 293320f1ed55SBarry Smith const PetscScalar *diag; 2934887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 293520f1ed55SBarry Smith PetscInt i,n; 2936fa22f6d0SBarry Smith 2937fa22f6d0SBarry Smith if (!mat->xx1) { 2938fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2939fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2940fa22f6d0SBarry Smith } 2941fa22f6d0SBarry Smith xx1 = mat->xx1; 2942fa22f6d0SBarry Smith bb1 = mat->bb1; 2943fa22f6d0SBarry Smith 294441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2945fa22f6d0SBarry Smith 2946fa22f6d0SBarry Smith if (!mat->diag) { 2947effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 29482a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2949fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2950fa22f6d0SBarry Smith } 2951fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2952fa22f6d0SBarry Smith 2953fa22f6d0SBarry Smith if (hasop) { 2954fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2955887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 295620f1ed55SBarry Smith } else { 295720f1ed55SBarry Smith /* 295820f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 295920f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2960887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 296120f1ed55SBarry Smith */ 296220f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29633649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29643649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 296520f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 296620f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2967887ee2caSBarry Smith if (omega == 1.0) { 296826fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 296920f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2970887ee2caSBarry Smith } else { 297126fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2972887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2973887ee2caSBarry Smith } 297420f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29753649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29763649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 297720f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 297820f1ed55SBarry Smith } 2979fa22f6d0SBarry Smith 2980fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2981fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2982fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2983fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2984fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2985fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2986fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2987fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2988fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2989fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2990effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2991fa22f6d0SBarry Smith 2992fa22f6d0SBarry Smith /* local sweep */ 299341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2994fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2995f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2996ffe4fb16SHong Zhang PetscFunctionReturn(0); 2997ffe4fb16SHong Zhang } 2998ffe4fb16SHong Zhang 2999ffe4fb16SHong Zhang #undef __FUNCT__ 300041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 300141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 3002ffe4fb16SHong Zhang { 3003ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3004dfbe8321SBarry Smith PetscErrorCode ierr; 30052798e883SHong Zhang Vec lvec1,bb1; 30062798e883SHong Zhang 30072798e883SHong Zhang PetscFunctionBegin; 3008e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3009e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 30102798e883SHong Zhang 3011c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 30122798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 301341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 30142798e883SHong Zhang its--; 30152798e883SHong Zhang } 30162798e883SHong Zhang 30172798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 30182798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 30192798e883SHong Zhang while (its--) { 3020ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30212798e883SHong Zhang 30222798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 30232798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3024efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 30252798e883SHong Zhang 3026ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30272798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3028ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30292798e883SHong Zhang 30302798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3031efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 30322798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 30332798e883SHong Zhang 3034ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30352798e883SHong Zhang 3036c14dc6b6SHong Zhang /* diagonal sweep */ 303741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 30382798e883SHong Zhang } 30396bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 30406bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 30416bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 30422798e883SHong Zhang PetscFunctionReturn(0); 30432798e883SHong Zhang } 30442798e883SHong Zhang 3045dfb205c3SBarry Smith #undef __FUNCT__ 3046dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 3047dfb205c3SBarry Smith /*@ 3048dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3049dfb205c3SBarry Smith CSR format the local rows. 3050dfb205c3SBarry Smith 3051dfb205c3SBarry Smith Collective on MPI_Comm 3052dfb205c3SBarry Smith 3053dfb205c3SBarry Smith Input Parameters: 3054dfb205c3SBarry Smith + comm - MPI communicator 3055dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3056dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3057dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3058dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3059dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3060dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3061dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3062dfb205c3SBarry Smith . i - row indices 3063dfb205c3SBarry Smith . j - column indices 3064dfb205c3SBarry Smith - a - matrix values 3065dfb205c3SBarry Smith 3066dfb205c3SBarry Smith Output Parameter: 3067dfb205c3SBarry Smith . mat - the matrix 3068dfb205c3SBarry Smith 3069dfb205c3SBarry Smith Level: intermediate 3070dfb205c3SBarry Smith 3071dfb205c3SBarry Smith Notes: 3072dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3073dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3074dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3075dfb205c3SBarry Smith 3076dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3077dfb205c3SBarry Smith 3078dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3079dfb205c3SBarry Smith 3080dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 308169b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3082dfb205c3SBarry Smith @*/ 30837087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3084dfb205c3SBarry Smith { 3085dfb205c3SBarry Smith PetscErrorCode ierr; 3086dfb205c3SBarry Smith 3087dfb205c3SBarry Smith 3088dfb205c3SBarry Smith PetscFunctionBegin; 3089f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3090dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3091dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3092dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3093dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3094dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3095dfb205c3SBarry Smith PetscFunctionReturn(0); 3096dfb205c3SBarry Smith } 3097dfb205c3SBarry Smith 3098dfb205c3SBarry Smith 3099dfb205c3SBarry Smith #undef __FUNCT__ 3100dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 3101dfb205c3SBarry Smith /*@C 3102dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3103dfb205c3SBarry Smith (the default parallel PETSc format). 3104dfb205c3SBarry Smith 3105dfb205c3SBarry Smith Collective on MPI_Comm 3106dfb205c3SBarry Smith 3107dfb205c3SBarry Smith Input Parameters: 31081c4f3114SJed Brown + B - the matrix 3109dfb205c3SBarry Smith . bs - the block size 3110dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3111dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3112dfb205c3SBarry Smith - v - optional values in the matrix 3113dfb205c3SBarry Smith 3114dfb205c3SBarry Smith Level: developer 3115dfb205c3SBarry Smith 3116dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3117dfb205c3SBarry Smith 311869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3119dfb205c3SBarry Smith @*/ 31207087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3121dfb205c3SBarry Smith { 31224ac538c5SBarry Smith PetscErrorCode ierr; 3123dfb205c3SBarry Smith 3124dfb205c3SBarry Smith PetscFunctionBegin; 31254ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3126dfb205c3SBarry Smith PetscFunctionReturn(0); 3127dfb205c3SBarry Smith } 3128dfb205c3SBarry Smith 3129de4b53ebSHong Zhang #undef __FUNCT__ 313010c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 313110c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 31324dcd73b1SHong Zhang { 31334dcd73b1SHong Zhang PetscErrorCode ierr; 313410c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 313510c56fdeSHong Zhang PetscInt *indx; 313610c56fdeSHong Zhang PetscScalar *values; 3137dfb205c3SBarry Smith 31384dcd73b1SHong Zhang PetscFunctionBegin; 31394dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 314010c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 314110c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 314210c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 314310c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 31444dcd73b1SHong Zhang 314510c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 314610c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 314710c56fdeSHong Zhang if (n == PETSC_DECIDE) { 314810c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 314910c56fdeSHong Zhang } 315010c56fdeSHong Zhang /* Check sum(n) = Nbs */ 3151b2566f29SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 315210c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 315310c56fdeSHong Zhang 315410c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 315510c56fdeSHong Zhang rstart -= mbs; 31564dcd73b1SHong Zhang 31574dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 315810c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3159e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 316010c56fdeSHong Zhang for (i=0; i<mbs; i++) { 31614dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 31624dcd73b1SHong Zhang nnz = nnz/bs; 31634dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 31644dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 31654dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 31664dcd73b1SHong Zhang } 3167e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 31684dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 31694dcd73b1SHong Zhang 31704dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 317110c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 31724dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 31734dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 31744dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 31754dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 31764dcd73b1SHong Zhang } 31774dcd73b1SHong Zhang 317810c56fdeSHong Zhang /* numeric phase */ 31794dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 318010c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 31814dcd73b1SHong Zhang 3182e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 31834dcd73b1SHong Zhang for (i=0; i<m; i++) { 31844dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31854dcd73b1SHong Zhang Ii = i + rstart; 318610c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 31874dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31884dcd73b1SHong Zhang } 3189e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 319010c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 319110c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31924dcd73b1SHong Zhang PetscFunctionReturn(0); 31934dcd73b1SHong Zhang } 3194