1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 909573ac7SBarry Smith extern PetscErrorCode DisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 267087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 417087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 55a30f8f8cSSatish Balay { \ 56a30f8f8cSSatish Balay \ 57a30f8f8cSSatish Balay brow = row/bs; \ 58a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 59a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 60a30f8f8cSSatish Balay bcol = col/bs; \ 61a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 62a30f8f8cSSatish Balay low = 0; high = nrow; \ 63a30f8f8cSSatish Balay while (high-low > 3) { \ 64a30f8f8cSSatish Balay t = (low+high)/2; \ 65a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 66a30f8f8cSSatish Balay else low = t; \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 69a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 70a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 71a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 72a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 73a30f8f8cSSatish Balay else *bap = value; \ 74a30f8f8cSSatish Balay goto a_noinsert; \ 75a30f8f8cSSatish Balay } \ 76a30f8f8cSSatish Balay } \ 77a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 78e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 79fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 80a30f8f8cSSatish Balay N = nrow++ - 1; \ 81a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 82a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 83a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 84a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 85a30f8f8cSSatish Balay } \ 86a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 87a30f8f8cSSatish Balay rp[_i] = bcol; \ 88a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 89a30f8f8cSSatish Balay a_noinsert:; \ 90a30f8f8cSSatish Balay ailen[brow] = nrow; \ 91a30f8f8cSSatish Balay } 92e5e170daSBarry Smith 93a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 94a30f8f8cSSatish Balay { \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 97a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto b_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 116e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 117fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 118a30f8f8cSSatish Balay N = nrow++ - 1; \ 119a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 120a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 121a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 122a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay } \ 124a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 125a30f8f8cSSatish Balay rp[_i] = bcol; \ 126a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 127a30f8f8cSSatish Balay b_noinsert:; \ 128a30f8f8cSSatish Balay bilen[brow] = nrow; \ 129a30f8f8cSSatish Balay } 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 132a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 133a30f8f8cSSatish Balay */ 1344a2ae208SSatish Balay #undef __FUNCT__ 135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 137a30f8f8cSSatish Balay { 138a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 139a30f8f8cSSatish Balay MatScalar value; 140ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 141dfbe8321SBarry Smith PetscErrorCode ierr; 1421302d50aSBarry Smith PetscInt i,j,row,col; 143d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 144d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 145d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay /* Some Variables required in the macro */ 148a30f8f8cSSatish Balay Mat A = baij->A; 149a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1501302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 151a30f8f8cSSatish Balay MatScalar *aa=a->a; 152a30f8f8cSSatish Balay 153a30f8f8cSSatish Balay Mat B = baij->B; 154a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1551302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 156a30f8f8cSSatish Balay MatScalar *ba=b->a; 157a30f8f8cSSatish Balay 1581302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1591302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 160a30f8f8cSSatish Balay MatScalar *ap,*bap; 161a30f8f8cSSatish Balay 162a30f8f8cSSatish Balay /* for stash */ 163910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 164910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 16771fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 168a30f8f8cSSatish Balay if (!baij->donotstash){ 16959ffdab8SBarry Smith if (n > baij->n_loc) { 17059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17259ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith baij->n_loc = n; 17559ffdab8SBarry Smith } 17659ffdab8SBarry Smith in_loc = baij->in_loc; 17759ffdab8SBarry Smith v_loc = baij->v_loc; 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 181a30f8f8cSSatish Balay if (im[i] < 0) continue; 1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 183e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 184a30f8f8cSSatish Balay #endif 185a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 186a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 187a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18801b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 18901b2bd88SHong Zhang if (a->ignore_ltriangular){ 19001b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19101b2bd88SHong Zhang } else { 192e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19301b2bd88SHong Zhang } 19401b2bd88SHong Zhang } 195a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 196a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 197a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 198a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 199a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 200a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 201a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 202a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 204cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 205a30f8f8cSSatish Balay #endif 206a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 207a30f8f8cSSatish Balay if (mat->was_assembled) { 208a30f8f8cSSatish Balay if (!baij->colmap) { 209653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 210a30f8f8cSSatish Balay } 211a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 212a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21371730473SSatish Balay col = col - 1; 214a30f8f8cSSatish Balay #else 21571730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 216a30f8f8cSSatish Balay #endif 217a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 218a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 219a30f8f8cSSatish Balay col = in[j]; 220a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 221a30f8f8cSSatish Balay B = baij->B; 222a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 223a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 224a30f8f8cSSatish Balay ba=b->a; 22571730473SSatish Balay } else col += in[j]%bs; 226a30f8f8cSSatish Balay } else col = in[j]; 227a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 228a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 229a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } else { /* off processor entry */ 2334cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 234a30f8f8cSSatish Balay if (!baij->donotstash) { 235a30f8f8cSSatish Balay n_loc = 0; 236a30f8f8cSSatish Balay for (j=0; j<n; j++){ 237f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 238a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 239a30f8f8cSSatish Balay if (roworiented) { 240a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 241a30f8f8cSSatish Balay } else { 242a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay n_loc++; 245a30f8f8cSSatish Balay } 246b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 247a30f8f8cSSatish Balay } 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay PetscFunctionReturn(0); 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 2534a2ae208SSatish Balay #undef __FUNCT__ 254dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 255dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 256a30f8f8cSSatish Balay { 2570880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 258f15d580aSBarry Smith const MatScalar *value; 259f15d580aSBarry Smith MatScalar *barray=baij->barray; 260ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 261dfbe8321SBarry Smith PetscErrorCode ierr; 262899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 263899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 264d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2650880e062SHong Zhang 266a30f8f8cSSatish Balay PetscFunctionBegin; 2670880e062SHong Zhang if(!barray) { 2680880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2690880e062SHong Zhang baij->barray = barray; 2700880e062SHong Zhang } 2710880e062SHong Zhang 2720880e062SHong Zhang if (roworiented) { 2730880e062SHong Zhang stepval = (n-1)*bs; 2740880e062SHong Zhang } else { 2750880e062SHong Zhang stepval = (m-1)*bs; 2760880e062SHong Zhang } 2770880e062SHong Zhang for (i=0; i<m; i++) { 2780880e062SHong Zhang if (im[i] < 0) continue; 2792515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 280e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2810880e062SHong Zhang #endif 2820880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2830880e062SHong Zhang row = im[i] - rstart; 2840880e062SHong Zhang for (j=0; j<n; j++) { 285f3f98c53SJed Brown if (im[i] > in[j]) { 286f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 287e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 288f3f98c53SJed Brown } 2890880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2900880e062SHong Zhang if ((roworiented) && (n == 1)) { 291f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2920880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 293f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2940880e062SHong Zhang } else { /* Here a copy is required */ 2950880e062SHong Zhang if (roworiented) { 2960880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2970880e062SHong Zhang } else { 2980880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2990880e062SHong Zhang } 3000880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3010880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3020880e062SHong Zhang *barray++ = *value++; 3030880e062SHong Zhang } 3040880e062SHong Zhang } 3050880e062SHong Zhang barray -=bs2; 3060880e062SHong Zhang } 3070880e062SHong Zhang 3080880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3090880e062SHong Zhang col = in[j] - cstart; 3100880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3110880e062SHong Zhang } 3120880e062SHong Zhang else if (in[j] < 0) continue; 3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 314cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3150880e062SHong Zhang #endif 3160880e062SHong Zhang else { 3170880e062SHong Zhang if (mat->was_assembled) { 3180880e062SHong Zhang if (!baij->colmap) { 319653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3200880e062SHong Zhang } 3210880e062SHong Zhang 3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3230880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3241302d50aSBarry Smith { PetscInt data; 3250880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 326e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang } 3280880e062SHong Zhang #else 329e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3300880e062SHong Zhang #endif 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3330880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3340880e062SHong Zhang col = (col - 1)/bs; 3350880e062SHong Zhang #else 3360880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3370880e062SHong Zhang #endif 3380880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3390880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3400880e062SHong Zhang col = in[j]; 3410880e062SHong Zhang } 3420880e062SHong Zhang } 3430880e062SHong Zhang else col = in[j]; 344e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3450880e062SHong Zhang } 3460880e062SHong Zhang } 3470880e062SHong Zhang } else { 3484cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3490880e062SHong Zhang if (!baij->donotstash) { 3500880e062SHong Zhang if (roworiented) { 3510880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3520880e062SHong Zhang } else { 3530880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3540880e062SHong Zhang } 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang PetscFunctionReturn(0); 359a30f8f8cSSatish Balay } 360a30f8f8cSSatish Balay 3614a2ae208SSatish Balay #undef __FUNCT__ 3624a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3631302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 364a30f8f8cSSatish Balay { 365f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3666849ba73SBarry Smith PetscErrorCode ierr; 367d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 368d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 369a30f8f8cSSatish Balay 370a30f8f8cSSatish Balay PetscFunctionBegin; 371a30f8f8cSSatish Balay for (i=0; i<m; i++) { 372e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 373e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 374a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 375a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 376a30f8f8cSSatish Balay for (j=0; j<n; j++) { 377e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 378e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 379a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 380a30f8f8cSSatish Balay col = idxn[j] - bscstart; 381c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } else { 383a30f8f8cSSatish Balay if (!baij->colmap) { 384653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 385a30f8f8cSSatish Balay } 386a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 387a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 388a30f8f8cSSatish Balay data --; 389a30f8f8cSSatish Balay #else 390a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 391a30f8f8cSSatish Balay #endif 392a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 393a30f8f8cSSatish Balay else { 394a30f8f8cSSatish Balay col = data + idxn[j]%bs; 395e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } else { 400e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay PetscFunctionReturn(0); 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay 4064a2ae208SSatish Balay #undef __FUNCT__ 4074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 408dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 409a30f8f8cSSatish Balay { 410a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 411dfbe8321SBarry Smith PetscErrorCode ierr; 412a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 413a30f8f8cSSatish Balay 414a30f8f8cSSatish Balay PetscFunctionBegin; 415a30f8f8cSSatish Balay if (baij->size == 1) { 416a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } else { 418a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 419f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 420a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 422a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 423a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 424d9822059SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 425a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 426a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4270b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4280b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4290b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4300b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 431899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 432d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4330b8dc8d2SHong Zhang MatScalar *v; 4340b8dc8d2SHong Zhang 43574ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 436d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4370b8dc8d2SHong Zhang /* Amat */ 4380b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4390b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4400b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4410b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4420b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4430b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4440b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4450b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4460b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4470b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4480b8dc8d2SHong Zhang /* non-diagonal block */ 4490b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang /* Bmat */ 4550b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4560b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4570b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4580b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4590b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4600b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4610b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4620b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4630b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4640b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4650b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4660b8dc8d2SHong Zhang } 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 470d9822059SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4710b8dc8d2SHong Zhang *norm = 0.0; 472d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4730b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4740b8dc8d2SHong Zhang } 47574ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 476a30f8f8cSSatish Balay } else { 477e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 478a30f8f8cSSatish Balay } 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay PetscFunctionReturn(0); 481a30f8f8cSSatish Balay } 482a30f8f8cSSatish Balay 4834a2ae208SSatish Balay #undef __FUNCT__ 4844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 485dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 486a30f8f8cSSatish Balay { 487a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 488dfbe8321SBarry Smith PetscErrorCode ierr; 4891302d50aSBarry Smith PetscInt nstash,reallocs; 490a30f8f8cSSatish Balay InsertMode addv; 491a30f8f8cSSatish Balay 492a30f8f8cSSatish Balay PetscFunctionBegin; 4934cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 494a30f8f8cSSatish Balay PetscFunctionReturn(0); 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay 497a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4987adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 499e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 500a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 501a30f8f8cSSatish Balay 502d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5031e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 504a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5051e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 506a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5071e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 508a30f8f8cSSatish Balay PetscFunctionReturn(0); 509a30f8f8cSSatish Balay } 510a30f8f8cSSatish Balay 5114a2ae208SSatish Balay #undef __FUNCT__ 5124a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 513dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 514a30f8f8cSSatish Balay { 515a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 516a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5176849ba73SBarry Smith PetscErrorCode ierr; 51813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 519e44c0bd4SBarry Smith PetscInt *row,*col; 520ace3abfcSBarry Smith PetscBool other_disassembled; 52113f74950SBarry Smith PetscMPIInt n; 522ace3abfcSBarry Smith PetscBool r1,r2,r3; 523a30f8f8cSSatish Balay MatScalar *val; 524a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 525a30f8f8cSSatish Balay 52691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 527a30f8f8cSSatish Balay PetscFunctionBegin; 528a30f8f8cSSatish Balay 5294cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 530a30f8f8cSSatish Balay while (1) { 531a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 532a30f8f8cSSatish Balay if (!flg) break; 533a30f8f8cSSatish Balay 534a30f8f8cSSatish Balay for (i=0; i<n;) { 535a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 536a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 537a30f8f8cSSatish Balay if (j < n) ncols = j-i; 538a30f8f8cSSatish Balay else ncols = n-i; 539a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 540dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 541a30f8f8cSSatish Balay i = j; 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay } 544a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 545a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 546a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 547a30f8f8cSSatish Balay restore the original flags */ 548a30f8f8cSSatish Balay r1 = baij->roworiented; 549a30f8f8cSSatish Balay r2 = a->roworiented; 55091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 551a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 552a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 554a30f8f8cSSatish Balay while (1) { 555a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 556a30f8f8cSSatish Balay if (!flg) break; 557a30f8f8cSSatish Balay 558a30f8f8cSSatish Balay for (i=0; i<n;) { 559a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 560a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 561a30f8f8cSSatish Balay if (j < n) ncols = j-i; 562a30f8f8cSSatish Balay else ncols = n-i; 563dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 564a30f8f8cSSatish Balay i = j; 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay } 567a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 568a30f8f8cSSatish Balay baij->roworiented = r1; 569a30f8f8cSSatish Balay a->roworiented = r2; 57091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 577a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 578a30f8f8cSSatish Balay /* 579a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 580a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 581a30f8f8cSSatish Balay */ 582a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5837adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 584a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 585c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 591a30f8f8cSSatish Balay } 592cd6b891eSBarry Smith ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 595a30f8f8cSSatish Balay 59674ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 597a30f8f8cSSatish Balay baij->rowvalues = 0; 5985222a1afSHong Zhang 599a30f8f8cSSatish Balay PetscFunctionReturn(0); 600a30f8f8cSSatish Balay } 601a30f8f8cSSatish Balay 602dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6034a2ae208SSatish Balay #undef __FUNCT__ 6044a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6056849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 606a30f8f8cSSatish Balay { 607a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 608dfbe8321SBarry Smith PetscErrorCode ierr; 609d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6101302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 611ace3abfcSBarry Smith PetscBool iascii,isdraw; 612b0a32e0cSBarry Smith PetscViewer sviewer; 613f3ef73ceSBarry Smith PetscViewerFormat format; 614a30f8f8cSSatish Balay 615a30f8f8cSSatish Balay PetscFunctionBegin; 6162692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6172692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61832077d6dSBarry Smith if (iascii) { 619b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 620456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 621a30f8f8cSSatish Balay MatInfo info; 6227adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 623a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 62516608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 627e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 629e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 630b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 633a30f8f8cSSatish Balay PetscFunctionReturn(0); 634fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 636a30f8f8cSSatish Balay PetscFunctionReturn(0); 637c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 638c1490034SHong Zhang PetscFunctionReturn(0); 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay if (isdraw) { 643b0a32e0cSBarry Smith PetscDraw draw; 644ace3abfcSBarry Smith PetscBool isnull; 645b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 646b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay if (size == 1) { 6507adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 651a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 652a30f8f8cSSatish Balay } else { 653a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 654a30f8f8cSSatish Balay Mat A; 65565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 657d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 658a30f8f8cSSatish Balay MatScalar *a; 659a30f8f8cSSatish Balay 660f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6617adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 662a30f8f8cSSatish Balay if (!rank) { 663f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } else { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 668d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 66952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay /* copy over the A part */ 67265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 673a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6741302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 677e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 678a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 679a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 680e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 681a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 682dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 683a30f8f8cSSatish Balay col++; a += bs; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay /* copy over the B part */ 68865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 690a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 691e9f7bc9eSHong Zhang 692e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 693a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 694a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 695a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 696a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 697799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 698a30f8f8cSSatish Balay col++; a += bs; 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay /* 706a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 707b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 708a30f8f8cSSatish Balay */ 709b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71065d70643SHong Zhang if (!rank) { 7117adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7127566de4bSShri Abhyankar /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/ 7137566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ); 714a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay } 716b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay PetscFunctionReturn(0); 720a30f8f8cSSatish Balay } 721a30f8f8cSSatish Balay 7224a2ae208SSatish Balay #undef __FUNCT__ 7234a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 724dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 725a30f8f8cSSatish Balay { 726dfbe8321SBarry Smith PetscErrorCode ierr; 727ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 728a30f8f8cSSatish Balay 729a30f8f8cSSatish Balay PetscFunctionBegin; 7302692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 7312692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7322692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 7332692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73432077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 735a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 736a30f8f8cSSatish Balay } else { 737e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay PetscFunctionReturn(0); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay 7424a2ae208SSatish Balay #undef __FUNCT__ 7434a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 744dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 748a30f8f8cSSatish Balay 749a30f8f8cSSatish Balay PetscFunctionBegin; 750a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 751d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 752a30f8f8cSSatish Balay #endif 753a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 75513ea16ffSHong Zhang if (baij->A){ierr = MatDestroy(baij->A);CHKERRQ(ierr);} 75613ea16ffSHong Zhang if (baij->B){ierr = MatDestroy(baij->B);CHKERRQ(ierr);} 757a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7589c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 759a30f8f8cSSatish Balay #else 76005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 761a30f8f8cSSatish Balay #endif 76205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 763a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 764a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76540781036SHong Zhang if (baij->slvec0) { 76640781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76740781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76840781036SHong Zhang } 76940781036SHong Zhang if (baij->slvec1) { 77040781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 77140781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77240781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77340781036SHong Zhang } 77440781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 7755755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77605b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77705b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 778fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 779fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 780fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 781*ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78205b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 783a30f8f8cSSatish Balay #endif 78459ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78559ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 786899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 787a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 788901853e0SKris Buschelman 789dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 793901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 794a30f8f8cSSatish Balay PetscFunctionReturn(0); 795a30f8f8cSSatish Balay } 796a30f8f8cSSatish Balay 7974a2ae208SSatish Balay #undef __FUNCT__ 798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 800547795f9SHong Zhang { 801547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 802547795f9SHong Zhang PetscErrorCode ierr; 803547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 804547795f9SHong Zhang PetscScalar *x,*from; 805547795f9SHong Zhang 806547795f9SHong Zhang PetscFunctionBegin; 807547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 808e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 809547795f9SHong Zhang 810547795f9SHong Zhang /* diagonal part */ 811547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 812547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 813547795f9SHong Zhang 814547795f9SHong Zhang /* subdiagonal part */ 815547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang /* copy x into the vec slvec0 */ 818547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 819547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 820547795f9SHong Zhang 821547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 823547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 824547795f9SHong Zhang 825547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 827547795f9SHong Zhang /* supperdiagonal part */ 828547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 829547795f9SHong Zhang PetscFunctionReturn(0); 830547795f9SHong Zhang } 831547795f9SHong Zhang 832547795f9SHong Zhang #undef __FUNCT__ 833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 835a9d4b620SHong Zhang { 836a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 837dfbe8321SBarry Smith PetscErrorCode ierr; 838d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 839fa22f6d0SBarry Smith PetscScalar *x,*from; 840a9d4b620SHong Zhang 841a9d4b620SHong Zhang PetscFunctionBegin; 842a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 843e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 844a9d4b620SHong Zhang 845a9d4b620SHong Zhang /* diagonal part */ 846a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 847fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 848a9d4b620SHong Zhang 849a9d4b620SHong Zhang /* subdiagonal part */ 850a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 851fc165ae2SBarry Smith 852a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8531ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 855a9d4b620SHong Zhang 856fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 857fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8581ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 859fc165ae2SBarry Smith 860fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 861ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 862a9d4b620SHong Zhang /* supperdiagonal part */ 863a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 864a9d4b620SHong Zhang PetscFunctionReturn(0); 865a9d4b620SHong Zhang } 866a9d4b620SHong Zhang 867a9d4b620SHong Zhang #undef __FUNCT__ 86840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 869dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 870a30f8f8cSSatish Balay { 871a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 872dfbe8321SBarry Smith PetscErrorCode ierr; 8731302d50aSBarry Smith PetscInt nt; 874a30f8f8cSSatish Balay 875a30f8f8cSSatish Balay PetscFunctionBegin; 876a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 877e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 878e7e72b3dSBarry Smith 879a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 880e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88165d70643SHong Zhang 882ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 883b941877fSHong Zhang /* do diagonal part */ 884b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 885b941877fSHong Zhang /* do supperdiagonal part */ 886ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 887b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 888b941877fSHong Zhang /* do subdiagonal part */ 889b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 890ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 891ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89265d70643SHong Zhang 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 8964a2ae208SSatish Balay #undef __FUNCT__ 8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 899a30f8f8cSSatish Balay { 900de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 901dfbe8321SBarry Smith PetscErrorCode ierr; 902d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 903a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 904a9d4b620SHong Zhang 905a9d4b620SHong Zhang PetscFunctionBegin; 906a9d4b620SHong Zhang /* 9077adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9087adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 909a9d4b620SHong Zhang */ 910a9d4b620SHong Zhang /* diagonal part */ 911a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9122dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 913a9d4b620SHong Zhang 914a9d4b620SHong Zhang /* subdiagonal part */ 915a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 916a9d4b620SHong Zhang 917a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9181ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9191ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 920a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9211ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 922a9d4b620SHong Zhang 923ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 925ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 926a9d4b620SHong Zhang 927a9d4b620SHong Zhang /* supperdiagonal part */ 928a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 929a9d4b620SHong Zhang 930a9d4b620SHong Zhang PetscFunctionReturn(0); 931a9d4b620SHong Zhang } 932a9d4b620SHong Zhang 933a9d4b620SHong Zhang #undef __FUNCT__ 934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 936a9d4b620SHong Zhang { 937a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 938dfbe8321SBarry Smith PetscErrorCode ierr; 939a30f8f8cSSatish Balay 940a30f8f8cSSatish Balay PetscFunctionBegin; 941ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 942b941877fSHong Zhang /* do diagonal part */ 943b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 944b941877fSHong Zhang /* do supperdiagonal part */ 945ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 946de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 947de8b6608SHong Zhang 948b941877fSHong Zhang /* do subdiagonal part */ 949a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 950ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 951ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 952aa482183SHong Zhang 953a30f8f8cSSatish Balay PetscFunctionReturn(0); 954a30f8f8cSSatish Balay } 955a30f8f8cSSatish Balay 956a30f8f8cSSatish Balay /* 957a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 958a30f8f8cSSatish Balay diagonal block 959a30f8f8cSSatish Balay */ 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 963a30f8f8cSSatish Balay { 964a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 969a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 970a30f8f8cSSatish Balay PetscFunctionReturn(0); 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay 9734a2ae208SSatish Balay #undef __FUNCT__ 9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 976a30f8f8cSSatish Balay { 977a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 978dfbe8321SBarry Smith PetscErrorCode ierr; 979a30f8f8cSSatish Balay 980a30f8f8cSSatish Balay PetscFunctionBegin; 981f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 982f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 983a30f8f8cSSatish Balay PetscFunctionReturn(0); 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay 9864a2ae208SSatish Balay #undef __FUNCT__ 9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 989a30f8f8cSSatish Balay { 990d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 991d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 992d0d4cfc2SHong Zhang PetscErrorCode ierr; 993d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 994d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 995899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 996d0d4cfc2SHong Zhang 997a30f8f8cSSatish Balay PetscFunctionBegin; 998e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 999d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1000d0d4cfc2SHong Zhang 1001d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1002d0d4cfc2SHong Zhang /* 1003d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1004d0d4cfc2SHong Zhang */ 1005d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1006d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1007d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1008d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1009d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1010d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1011d0d4cfc2SHong Zhang } 101274ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1013d0d4cfc2SHong Zhang } 1014d0d4cfc2SHong Zhang 1015e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1016d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1017d0d4cfc2SHong Zhang 1018d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1019d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1020d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1021d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1022d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1023d0d4cfc2SHong Zhang nztot = nzA + nzB; 1024d0d4cfc2SHong Zhang 1025d0d4cfc2SHong Zhang cmap = mat->garray; 1026d0d4cfc2SHong Zhang if (v || idx) { 1027d0d4cfc2SHong Zhang if (nztot) { 1028d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1029d0d4cfc2SHong Zhang PetscInt imark = -1; 1030d0d4cfc2SHong Zhang if (v) { 1031d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1032d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1033d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1034d0d4cfc2SHong Zhang else break; 1035d0d4cfc2SHong Zhang } 1036d0d4cfc2SHong Zhang imark = i; 1037d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1038d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang if (idx) { 1041d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1042d0d4cfc2SHong Zhang if (imark > -1) { 1043d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1044d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang } else { 1047d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1048d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1049d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1050d0d4cfc2SHong Zhang else break; 1051d0d4cfc2SHong Zhang } 1052d0d4cfc2SHong Zhang imark = i; 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1055d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1056d0d4cfc2SHong Zhang } 1057d0d4cfc2SHong Zhang } else { 1058d0d4cfc2SHong Zhang if (idx) *idx = 0; 1059d0d4cfc2SHong Zhang if (v) *v = 0; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang } 1062d0d4cfc2SHong Zhang *nz = nztot; 1063d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1064d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1065a30f8f8cSSatish Balay PetscFunctionReturn(0); 1066a30f8f8cSSatish Balay } 1067a30f8f8cSSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1071a30f8f8cSSatish Balay { 1072a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1073a30f8f8cSSatish Balay 1074a30f8f8cSSatish Balay PetscFunctionBegin; 1075e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1076a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1077a30f8f8cSSatish Balay PetscFunctionReturn(0); 1078a30f8f8cSSatish Balay } 1079a30f8f8cSSatish Balay 10804a2ae208SSatish Balay #undef __FUNCT__ 1081d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1082d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1083d0d4cfc2SHong Zhang { 1084d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1085d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1086d0d4cfc2SHong Zhang 1087d0d4cfc2SHong Zhang PetscFunctionBegin; 1088d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1089d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1090d0d4cfc2SHong Zhang } 1091d0d4cfc2SHong Zhang #undef __FUNCT__ 1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1093d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1094d0d4cfc2SHong Zhang { 1095d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1096d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1097d0d4cfc2SHong Zhang 1098d0d4cfc2SHong Zhang PetscFunctionBegin; 1099d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1100d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1101d0d4cfc2SHong Zhang } 1102d0d4cfc2SHong Zhang 1103d0d4cfc2SHong Zhang #undef __FUNCT__ 110499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110699cafbc1SBarry Smith { 110799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110899cafbc1SBarry Smith PetscErrorCode ierr; 110999cafbc1SBarry Smith 111099cafbc1SBarry Smith PetscFunctionBegin; 111199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111399cafbc1SBarry Smith PetscFunctionReturn(0); 111499cafbc1SBarry Smith } 111599cafbc1SBarry Smith 111699cafbc1SBarry Smith #undef __FUNCT__ 111799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111999cafbc1SBarry Smith { 112099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112199cafbc1SBarry Smith PetscErrorCode ierr; 112299cafbc1SBarry Smith 112399cafbc1SBarry Smith PetscFunctionBegin; 112499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112699cafbc1SBarry Smith PetscFunctionReturn(0); 112799cafbc1SBarry Smith } 112899cafbc1SBarry Smith 112999cafbc1SBarry Smith #undef __FUNCT__ 11304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1131dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1132a30f8f8cSSatish Balay { 1133a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1134dfbe8321SBarry Smith PetscErrorCode ierr; 1135a30f8f8cSSatish Balay 1136a30f8f8cSSatish Balay PetscFunctionBegin; 1137a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay PetscFunctionReturn(0); 1140a30f8f8cSSatish Balay } 1141a30f8f8cSSatish Balay 11424a2ae208SSatish Balay #undef __FUNCT__ 11434a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1144dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1145a30f8f8cSSatish Balay { 1146a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1147a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1148dfbe8321SBarry Smith PetscErrorCode ierr; 1149a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1150a30f8f8cSSatish Balay 1151a30f8f8cSSatish Balay PetscFunctionBegin; 1152d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1153a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1154a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1155a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1156a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1157a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1158a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1159a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1160a30f8f8cSSatish Balay info->nz_used = isend[0]; 1161a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1162a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1163a30f8f8cSSatish Balay info->memory = isend[3]; 1164a30f8f8cSSatish Balay info->mallocs = isend[4]; 1165a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1166d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1168a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1169a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1170a30f8f8cSSatish Balay info->memory = irecv[3]; 1171a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1172a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1173d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1175a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1176a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1177a30f8f8cSSatish Balay info->memory = irecv[3]; 1178a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1179a30f8f8cSSatish Balay } else { 1180e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1183a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1184a30f8f8cSSatish Balay info->factor_mallocs = 0; 1185a30f8f8cSSatish Balay PetscFunctionReturn(0); 1186a30f8f8cSSatish Balay } 1187a30f8f8cSSatish Balay 11884a2ae208SSatish Balay #undef __FUNCT__ 11894a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1190ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1191a30f8f8cSSatish Balay { 1192a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1193d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1194dfbe8321SBarry Smith PetscErrorCode ierr; 1195a30f8f8cSSatish Balay 1196a30f8f8cSSatish Balay PetscFunctionBegin; 1197e98b92d7SKris Buschelman switch (op) { 1198512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1199e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1201a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1202e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12034e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12044e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1205e98b92d7SKris Buschelman break; 1206e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12074e0d8c25SBarry Smith a->roworiented = flg; 12084e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12094e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1210e98b92d7SKris Buschelman break; 12114e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1212290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1213e98b92d7SKris Buschelman break; 1214e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12154e0d8c25SBarry Smith a->donotstash = flg; 1216e98b92d7SKris Buschelman break; 1217e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12184e0d8c25SBarry Smith a->ht_flag = flg; 1219e98b92d7SKris Buschelman break; 12209a4540c5SBarry Smith case MAT_HERMITIAN: 1221e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1222eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1223547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1224eeffb40dSHong Zhang break; 1225ffa07934SHong Zhang case MAT_SPD: 1226ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1227ffa07934SHong Zhang A->spd = flg; 1228ffa07934SHong Zhang if (flg) { 1229ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1230ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1231ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1232ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1233ffa07934SHong Zhang } 1234ffa07934SHong Zhang break; 123577e54ba9SKris Buschelman case MAT_SYMMETRIC: 1236eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1237eeffb40dSHong Zhang break; 123877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1239eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1240eeffb40dSHong Zhang break; 12419a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1242e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1243290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124477e54ba9SKris Buschelman break; 1245d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12464e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1247d0d4cfc2SHong Zhang break; 1248d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12494e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1250d0d4cfc2SHong Zhang break; 1251d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12524e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1253d0d4cfc2SHong Zhang break; 1254e98b92d7SKris Buschelman default: 1255e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay PetscFunctionReturn(0); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1263a30f8f8cSSatish Balay { 1264dfbe8321SBarry Smith PetscErrorCode ierr; 1265a30f8f8cSSatish Balay PetscFunctionBegin; 1266815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1267999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1268fc4dec0aSBarry Smith } 12698115998fSBarry Smith PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 12724a2ae208SSatish Balay #undef __FUNCT__ 12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1275a30f8f8cSSatish Balay { 1276a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1277a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1278dfbe8321SBarry Smith PetscErrorCode ierr; 12795e90f9d9SHong Zhang PetscInt nv,m,n; 1280ace3abfcSBarry Smith PetscBool flg; 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay PetscFunctionBegin; 1283a30f8f8cSSatish Balay if (ll != rr){ 1284b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1285e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1286a30f8f8cSSatish Balay } 1287b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1288b3bf805bSHong Zhang 12895e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1290e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1291b3bf805bSHong Zhang 12925e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1293e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12945e90f9d9SHong Zhang 1295ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12965e90f9d9SHong Zhang 12975e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1298a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12995e90f9d9SHong Zhang 13005e90f9d9SHong Zhang /* scale the diagonal part */ 1301a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay 13035e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1304ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay PetscFunctionReturn(0); 1307a30f8f8cSSatish Balay } 1308a30f8f8cSSatish Balay 13094a2ae208SSatish Balay #undef __FUNCT__ 13104a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1311dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1312a30f8f8cSSatish Balay { 1313f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1314dfbe8321SBarry Smith PetscErrorCode ierr; 1315a30f8f8cSSatish Balay 1316a30f8f8cSSatish Balay PetscFunctionBegin; 1317a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1318a30f8f8cSSatish Balay PetscFunctionReturn(0); 1319a30f8f8cSSatish Balay } 1320a30f8f8cSSatish Balay 13216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1322a30f8f8cSSatish Balay 13234a2ae208SSatish Balay #undef __FUNCT__ 13244a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1325ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1326a30f8f8cSSatish Balay { 1327a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1328a30f8f8cSSatish Balay Mat a,b,c,d; 1329ace3abfcSBarry Smith PetscBool flg; 1330dfbe8321SBarry Smith PetscErrorCode ierr; 1331a30f8f8cSSatish Balay 1332a30f8f8cSSatish Balay PetscFunctionBegin; 1333a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1334a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1335a30f8f8cSSatish Balay 1336a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1337abc0a331SBarry Smith if (flg) { 1338a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1339a30f8f8cSSatish Balay } 13407adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay PetscFunctionReturn(0); 1342a30f8f8cSSatish Balay } 1343a30f8f8cSSatish Balay 13444a2ae208SSatish Balay #undef __FUNCT__ 13453c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13473c896bc6SHong Zhang { 13483c896bc6SHong Zhang PetscErrorCode ierr; 13493c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13503c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13513c896bc6SHong Zhang 13523c896bc6SHong Zhang PetscFunctionBegin; 13533c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13543c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1355d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13563c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1357d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13583c896bc6SHong Zhang } else { 13593c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13603c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13613c896bc6SHong Zhang } 13623c896bc6SHong Zhang PetscFunctionReturn(0); 13633c896bc6SHong Zhang } 13643c896bc6SHong Zhang 13653c896bc6SHong Zhang #undef __FUNCT__ 13664a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1367dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1368273d9f13SBarry Smith { 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370273d9f13SBarry Smith 1371273d9f13SBarry Smith PetscFunctionBegin; 1372db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1373273d9f13SBarry Smith PetscFunctionReturn(0); 1374273d9f13SBarry Smith } 1375a5e6ed63SBarry Smith 13764fe895cdSHong Zhang #undef __FUNCT__ 13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13794fe895cdSHong Zhang { 13804fe895cdSHong Zhang PetscErrorCode ierr; 13814fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13824fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13834fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13844fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13854fe895cdSHong Zhang 13864fe895cdSHong Zhang PetscFunctionBegin; 13874fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13884fe895cdSHong Zhang PetscScalar alpha = a; 13894fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13904fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13910805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13934fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13944fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13950805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13964fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13974fe895cdSHong Zhang } else { 1398d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13994fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1400d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14014fe895cdSHong Zhang } 14024fe895cdSHong Zhang PetscFunctionReturn(0); 14034fe895cdSHong Zhang } 14044fe895cdSHong Zhang 1405a5e6ed63SBarry Smith #undef __FUNCT__ 14066363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14076363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14086363de48SJed Brown { 14096363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14106363de48SJed Brown PetscInt rbs,cbs; 14116363de48SJed Brown PetscErrorCode ierr; 14126363de48SJed Brown 14136363de48SJed Brown PetscFunctionBegin; 14146363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14156363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14166363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14176363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1418e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 1419e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14206363de48SJed Brown PetscFunctionReturn(0); 14216363de48SJed Brown } 14226363de48SJed Brown 14236363de48SJed Brown #undef __FUNCT__ 1424a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14251302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1426a5e6ed63SBarry Smith { 14276849ba73SBarry Smith PetscErrorCode ierr; 14281302d50aSBarry Smith PetscInt i; 1429ace3abfcSBarry Smith PetscBool flg; 1430a5e6ed63SBarry Smith 14316849ba73SBarry Smith PetscFunctionBegin; 1432a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1433a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1434e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1435a5e6ed63SBarry Smith } 1436a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1437a5e6ed63SBarry Smith PetscFunctionReturn(0); 1438a5e6ed63SBarry Smith } 1439a5e6ed63SBarry Smith 1440a5e6ed63SBarry Smith 1441a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1442a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1443a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1444a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1445a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1446a9d4b620SHong Zhang MatMult_MPISBAIJ, 144797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1448431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1449431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 1452a30f8f8cSSatish Balay 0, 145397304618SKris Buschelman /*10*/ 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 145641f059aeSBarry Smith MatSOR_MPISBAIJ, 1457a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 145897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1459a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1460a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1461a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1462a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1464a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1465a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1466a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1467d519adbfSMatthew Knepley /*24*/ 0, 1468a30f8f8cSSatish Balay 0, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1473b5df2d14SHong Zhang 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1483a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1484d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1485a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14863c896bc6SHong Zhang MatCopy_MPISBAIJ, 1487d519adbfSMatthew Knepley /*44*/ 0, 1488a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 14926363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497d519adbfSMatthew Knepley /*54*/ 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1502d519adbfSMatthew Knepley /*59*/ 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505357abbc8SBarry Smith 0, 150624d5174aSHong Zhang 0, 1507d519adbfSMatthew Knepley /*64*/ 0, 150824d5174aSHong Zhang 0, 150924d5174aSHong Zhang 0, 151024d5174aSHong Zhang 0, 151124d5174aSHong Zhang 0, 1512d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151324d5174aSHong Zhang 0, 151497304618SKris Buschelman 0, 151597304618SKris Buschelman 0, 151697304618SKris Buschelman 0, 1517d519adbfSMatthew Knepley /*74*/ 0, 151897304618SKris Buschelman 0, 151997304618SKris Buschelman 0, 152097304618SKris Buschelman 0, 152197304618SKris Buschelman 0, 1522d519adbfSMatthew Knepley /*79*/ 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 15265bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1527d519adbfSMatthew Knepley /*84*/ 0, 1528865e5f61SKris Buschelman 0, 1529865e5f61SKris Buschelman 0, 1530865e5f61SKris Buschelman 0, 1531865e5f61SKris Buschelman 0, 1532d519adbfSMatthew Knepley /*89*/ 0, 1533865e5f61SKris Buschelman 0, 1534865e5f61SKris Buschelman 0, 1535865e5f61SKris Buschelman 0, 1536865e5f61SKris Buschelman 0, 1537d519adbfSMatthew Knepley /*94*/ 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 154099cafbc1SBarry Smith 0, 154199cafbc1SBarry Smith 0, 1542d519adbfSMatthew Knepley /*99*/ 0, 154399cafbc1SBarry Smith 0, 154499cafbc1SBarry Smith 0, 154599cafbc1SBarry Smith 0, 154699cafbc1SBarry Smith 0, 1547d519adbfSMatthew Knepley /*104*/0, 154899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1549d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1550d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 155195936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 155295936485SShri Abhyankar /*109*/0, 155395936485SShri Abhyankar 0, 155495936485SShri Abhyankar 0, 155595936485SShri Abhyankar 0, 155695936485SShri Abhyankar 0, 155795936485SShri Abhyankar /*114*/0, 155895936485SShri Abhyankar 0, 155995936485SShri Abhyankar 0, 156095936485SShri Abhyankar 0, 156195936485SShri Abhyankar 0, 156295936485SShri Abhyankar /*119*/0, 156395936485SShri Abhyankar 0, 156495936485SShri Abhyankar 0, 15655bba2384SShri Abhyankar 0 156699cafbc1SBarry Smith }; 1567a30f8f8cSSatish Balay 1568a30f8f8cSSatish Balay 1569a30f8f8cSSatish Balay EXTERN_C_BEGIN 15704a2ae208SSatish Balay #undef __FUNCT__ 15714a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 15727087cfbeSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscBool *iscopy,MatReuse reuse,Mat *a) 1573a30f8f8cSSatish Balay { 1574a30f8f8cSSatish Balay PetscFunctionBegin; 1575a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1576a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1577a30f8f8cSSatish Balay PetscFunctionReturn(0); 1578a30f8f8cSSatish Balay } 1579a30f8f8cSSatish Balay EXTERN_C_END 1580a30f8f8cSSatish Balay 1581273d9f13SBarry Smith EXTERN_C_BEGIN 15824a2ae208SSatish Balay #undef __FUNCT__ 1583a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 15847087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1585a23d5eceSKris Buschelman { 1586a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1587dfbe8321SBarry Smith PetscErrorCode ierr; 1588db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1589a23d5eceSKris Buschelman 1590a23d5eceSKris Buschelman PetscFunctionBegin; 1591db4efbfdSBarry Smith if (bs < 0){ 15927adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1593db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15948c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1595db4efbfdSBarry Smith bs = PetscAbs(bs); 1596db4efbfdSBarry Smith } 1597e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1598db4efbfdSBarry Smith bs = newbs; 1599a23d5eceSKris Buschelman 1600a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1601a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1602e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1603e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1604899cda47SBarry Smith 1605d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 160626283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 160726283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1608899cda47SBarry Smith 1609a23d5eceSKris Buschelman if (d_nnz) { 1610d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1611e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1612a23d5eceSKris Buschelman } 1613a23d5eceSKris Buschelman } 1614a23d5eceSKris Buschelman if (o_nnz) { 1615d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1616e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman } 1619a23d5eceSKris Buschelman 1620a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1621d0f46423SBarry Smith mbs = B->rmap->n/bs; 1622d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1623d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1624e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1625a23d5eceSKris Buschelman } 1626a23d5eceSKris Buschelman 1627d0f46423SBarry Smith B->rmap->bs = bs; 1628a23d5eceSKris Buschelman b->bs2 = bs*bs; 1629a23d5eceSKris Buschelman b->mbs = mbs; 1630a23d5eceSKris Buschelman b->nbs = mbs; 1631a23d5eceSKris Buschelman b->Mbs = Mbs; 1632a23d5eceSKris Buschelman b->Nbs = Mbs; 1633a23d5eceSKris Buschelman 1634a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1635d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1636a23d5eceSKris Buschelman } 1637d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1638d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1639a23d5eceSKris Buschelman 1640d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1641d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1642a23d5eceSKris Buschelman 1643526dfc15SBarry Smith if (!B->preallocated) { 1644f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1645d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16469c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 164752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1648f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1649d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16504aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 165152e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 165215bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1653526dfc15SBarry Smith } 1654a23d5eceSKris Buschelman 1655526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1656526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1657526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1658a23d5eceSKris Buschelman PetscFunctionReturn(0); 1659a23d5eceSKris Buschelman } 1660a23d5eceSKris Buschelman EXTERN_C_END 1661a23d5eceSKris Buschelman 16625c9eb25fSBarry Smith EXTERN_C_BEGIN 1663dfb205c3SBarry Smith #undef __FUNCT__ 1664dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1665dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1666dfb205c3SBarry Smith { 1667dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1668dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1669dfb205c3SBarry Smith const PetscInt *JJ=0; 1670dfb205c3SBarry Smith PetscScalar *values=0; 1671dfb205c3SBarry Smith PetscErrorCode ierr; 1672dfb205c3SBarry Smith 1673dfb205c3SBarry Smith PetscFunctionBegin; 1674dfb205c3SBarry Smith 1675dfb205c3SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1676dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1677dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1678dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1679dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1680dfb205c3SBarry Smith m = B->rmap->n/bs; 1681dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1682dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1683dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1684dfb205c3SBarry Smith 1685dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1686dfb205c3SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 1687dfb205c3SBarry Smith for (i=0; i<m; i++) { 1688dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1689dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1690dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1691dfb205c3SBarry Smith JJ = jj + ii[i]; 1692dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1693dfb205c3SBarry Smith if (*JJ >= cstart) break; 1694dfb205c3SBarry Smith JJ++; 1695dfb205c3SBarry Smith } 1696dfb205c3SBarry Smith d = 0; 1697dfb205c3SBarry Smith for (; j<nz; j++) { 1698dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1699dfb205c3SBarry Smith d++; 1700dfb205c3SBarry Smith } 1701dfb205c3SBarry Smith d_nnz[i] = d; 1702dfb205c3SBarry Smith o_nnz[i] = nz - d; 1703dfb205c3SBarry Smith } 1704dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1705dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1706dfb205c3SBarry Smith 1707dfb205c3SBarry Smith values = (PetscScalar*)V; 1708dfb205c3SBarry Smith if (!values) { 1709dfb205c3SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 1710dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1711dfb205c3SBarry Smith } 1712dfb205c3SBarry Smith for (i=0; i<m; i++) { 1713dfb205c3SBarry Smith PetscInt row = i + rstart; 1714dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1715dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1716dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1717dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1718dfb205c3SBarry Smith } 1719dfb205c3SBarry Smith 1720dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1721dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1722dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1723dfb205c3SBarry Smith 1724dfb205c3SBarry Smith PetscFunctionReturn(0); 1725dfb205c3SBarry Smith } 1726dfb205c3SBarry Smith EXTERN_C_END 1727dfb205c3SBarry Smith 1728dfb205c3SBarry Smith EXTERN_C_BEGIN 1729611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 17307087cfbeSBarry Smith extern PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1731611f576cSBarry Smith #endif 1732611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 17337087cfbeSBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1734611f576cSBarry Smith #endif 1735b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1736b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1737b5e56a35SBarry Smith #endif 17385c9eb25fSBarry Smith EXTERN_C_END 17395c9eb25fSBarry Smith 17400bad9183SKris Buschelman /*MC 1741fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 17420bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 17430bad9183SKris Buschelman 17440bad9183SKris Buschelman Options Database Keys: 17450bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17460bad9183SKris Buschelman 17470bad9183SKris Buschelman Level: beginner 17480bad9183SKris Buschelman 17490bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17500bad9183SKris Buschelman M*/ 17510bad9183SKris Buschelman 1752a23d5eceSKris Buschelman EXTERN_C_BEGIN 1753a23d5eceSKris Buschelman #undef __FUNCT__ 17544a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17557087cfbeSBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1756b5df2d14SHong Zhang { 1757b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1758dfbe8321SBarry Smith PetscErrorCode ierr; 1759ace3abfcSBarry Smith PetscBool flg; 1760b5df2d14SHong Zhang 1761b5df2d14SHong Zhang PetscFunctionBegin; 1762b5df2d14SHong Zhang 176338f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1764b0a32e0cSBarry Smith B->data = (void*)b; 1765b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1766b5df2d14SHong Zhang 1767b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1768b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1769b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 17727adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 17737adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1774b5df2d14SHong Zhang 1775b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1776899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1777b5df2d14SHong Zhang 1778b5df2d14SHong Zhang /* build cache for off array entries formed */ 17797adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1780b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1781b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1782b5df2d14SHong Zhang b->garray = PETSC_NULL; 1783b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1784b5df2d14SHong Zhang 1785b5df2d14SHong Zhang /* stuff used in block assembly */ 1786b5df2d14SHong Zhang b->barray = 0; 1787b5df2d14SHong Zhang 1788b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1789b5df2d14SHong Zhang b->lvec = 0; 1790b5df2d14SHong Zhang b->Mvctx = 0; 179140781036SHong Zhang b->slvec0 = 0; 179240781036SHong Zhang b->slvec0b = 0; 179340781036SHong Zhang b->slvec1 = 0; 179440781036SHong Zhang b->slvec1a = 0; 179540781036SHong Zhang b->slvec1b = 0; 179640781036SHong Zhang b->sMvctx = 0; 1797b5df2d14SHong Zhang 1798b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1799b5df2d14SHong Zhang b->rowindices = 0; 1800b5df2d14SHong Zhang b->rowvalues = 0; 1801b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1802b5df2d14SHong Zhang 1803b5df2d14SHong Zhang /* hash table stuff */ 1804b5df2d14SHong Zhang b->ht = 0; 1805b5df2d14SHong Zhang b->hd = 0; 1806b5df2d14SHong Zhang b->ht_size = 0; 1807b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1808b5df2d14SHong Zhang b->ht_fact = 0; 1809b5df2d14SHong Zhang b->ht_total_ct = 0; 1810b5df2d14SHong Zhang b->ht_insert_ct = 0; 1811b5df2d14SHong Zhang 181259ffdab8SBarry Smith b->in_loc = 0; 181359ffdab8SBarry Smith b->v_loc = 0; 181459ffdab8SBarry Smith b->n_loc = 0; 18157adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 1816acfcf0e5SJed Brown ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1817b5df2d14SHong Zhang if (flg) { 1818f6275e2eSBarry Smith PetscReal fact = 1.39; 18194e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 18208c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1821b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1822b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18231e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1824b5df2d14SHong Zhang } 18258c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18268c07d4e3SBarry Smith 1827b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1828ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1829b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1830b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1831b5e56a35SBarry Smith #endif 1832611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1833ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 1834bccb9932SShri Abhyankar "MatGetFactor_sbaij_mumps", 1835bccb9932SShri Abhyankar MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1836611f576cSBarry Smith #endif 1837611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1838ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 18395c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 18405c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1841611f576cSBarry Smith #endif 1842b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1843b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1844b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1845b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1846b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1847b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1848b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1849b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1850b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1851a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1852a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1853a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1854dfb205c3SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C", 1855dfb205c3SBarry Smith "MatMPISBAIJSetPreallocationCSR_MPISBAIJ", 1856dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 185723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 185823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 185923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 186023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 186117667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1862b5df2d14SHong Zhang PetscFunctionReturn(0); 1863b5df2d14SHong Zhang } 1864273d9f13SBarry Smith EXTERN_C_END 1865b5df2d14SHong Zhang 1866209238afSKris Buschelman /*MC 1867002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1868209238afSKris Buschelman 1869209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1870209238afSKris Buschelman and MATMPISBAIJ otherwise. 1871209238afSKris Buschelman 1872209238afSKris Buschelman Options Database Keys: 1873209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1874209238afSKris Buschelman 1875209238afSKris Buschelman Level: beginner 1876209238afSKris Buschelman 1877209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1878209238afSKris Buschelman M*/ 1879209238afSKris Buschelman 1880209238afSKris Buschelman EXTERN_C_BEGIN 1881209238afSKris Buschelman #undef __FUNCT__ 1882209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 18837087cfbeSBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1884dfbe8321SBarry Smith { 18856849ba73SBarry Smith PetscErrorCode ierr; 18861302d50aSBarry Smith PetscMPIInt size; 1887209238afSKris Buschelman 1888209238afSKris Buschelman PetscFunctionBegin; 18897adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1890209238afSKris Buschelman if (size == 1) { 1891209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1892209238afSKris Buschelman } else { 1893209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1894209238afSKris Buschelman } 1895209238afSKris Buschelman PetscFunctionReturn(0); 1896209238afSKris Buschelman } 1897209238afSKris Buschelman EXTERN_C_END 1898209238afSKris Buschelman 18994a2ae208SSatish Balay #undef __FUNCT__ 19004a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1901b5df2d14SHong Zhang /*@C 1902b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1903b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1904b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1905b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1906b5df2d14SHong Zhang 1907b5df2d14SHong Zhang Collective on Mat 1908b5df2d14SHong Zhang 1909b5df2d14SHong Zhang Input Parameters: 1910b5df2d14SHong Zhang + A - the matrix 1911b5df2d14SHong Zhang . bs - size of blockk 1912b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1913b5df2d14SHong Zhang submatrix (same for all local rows) 1914b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 19156d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 19166d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 19176d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1918b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1919b5df2d14SHong Zhang submatrix (same for all local rows). 1920b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1921b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1922b5df2d14SHong Zhang each block row) or PETSC_NULL. 1923b5df2d14SHong Zhang 1924b5df2d14SHong Zhang 1925b5df2d14SHong Zhang Options Database Keys: 1926b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1927b5df2d14SHong Zhang block calculations (much slower) 1928b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1929b5df2d14SHong Zhang 1930b5df2d14SHong Zhang Notes: 1931b5df2d14SHong Zhang 1932b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1933b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1934b5df2d14SHong Zhang 193549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 193649a6f317SBarry Smith 1937b5df2d14SHong Zhang Storage Information: 1938b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1939b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1940b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1941b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1942b5df2d14SHong Zhang 1943b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1944b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1945b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1946b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1947b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1948b5df2d14SHong Zhang 1949aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1950aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1951aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1952aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1953aa95bbe8SBarry Smith 1954b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1955b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1956b5df2d14SHong Zhang 1957b5df2d14SHong Zhang .vb 1958b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1959b5df2d14SHong Zhang ------------------- 1960b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1961b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1962b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1963b5df2d14SHong Zhang ------------------- 1964b5df2d14SHong Zhang .ve 1965b5df2d14SHong Zhang 1966b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1967b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19686d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19696d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1970b5df2d14SHong Zhang 19716d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19726d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1973bf831d64SJed Brown and o_nz should indicate the number of block nonzeros per row in the upper triangular 1974bf831d64SJed Brown part of the o matrix. 1975b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1976b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1977b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1978b5df2d14SHong Zhang matrices. 1979b5df2d14SHong Zhang 1980b5df2d14SHong Zhang Level: intermediate 1981b5df2d14SHong Zhang 1982b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1983b5df2d14SHong Zhang 1984b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1985b5df2d14SHong Zhang @*/ 19867087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1987b5df2d14SHong Zhang { 19884ac538c5SBarry Smith PetscErrorCode ierr; 1989b5df2d14SHong Zhang 1990b5df2d14SHong Zhang PetscFunctionBegin; 19914ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1992b5df2d14SHong Zhang PetscFunctionReturn(0); 1993b5df2d14SHong Zhang } 1994b5df2d14SHong Zhang 19954a2ae208SSatish Balay #undef __FUNCT__ 19964a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1997a30f8f8cSSatish Balay /*@C 1998a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1999a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2000a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2001a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2002a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay Collective on MPI_Comm 2005a30f8f8cSSatish Balay 2006a30f8f8cSSatish Balay Input Parameters: 2007a30f8f8cSSatish Balay + comm - MPI communicator 2008a30f8f8cSSatish Balay . bs - size of blockk 2009a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2010a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2011a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2012a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2013a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2014a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2015a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2016a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2017a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2018a30f8f8cSSatish Balay submatrix (same for all local rows) 2019a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 20206d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 20216d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 20226d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 2023a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2024a30f8f8cSSatish Balay submatrix (same for all local rows). 2025a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2026a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 2027a30f8f8cSSatish Balay each block row) or PETSC_NULL. 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay Output Parameter: 2030a30f8f8cSSatish Balay . A - the matrix 2031a30f8f8cSSatish Balay 2032a30f8f8cSSatish Balay Options Database Keys: 2033a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2034a30f8f8cSSatish Balay block calculations (much slower) 2035a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2036a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2037a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2038a30f8f8cSSatish Balay 2039175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2040ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2041175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2042175b88e8SBarry Smith 2043a30f8f8cSSatish Balay Notes: 2044d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20456d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2046d1be2dadSMatthew Knepley 2047a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2048a30f8f8cSSatish Balay (possibly both). 2049a30f8f8cSSatish Balay 2050a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2051a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2052a30f8f8cSSatish Balay 205349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 205449a6f317SBarry Smith 2055a30f8f8cSSatish Balay Storage Information: 2056a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2057a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2058a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2059a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2062a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 2063a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2064a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2065a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2066a30f8f8cSSatish Balay 2067a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2068a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2069a30f8f8cSSatish Balay 2070a30f8f8cSSatish Balay .vb 2071a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2072a30f8f8cSSatish Balay ------------------- 2073a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2074a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2075a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2076a30f8f8cSSatish Balay ------------------- 2077a30f8f8cSSatish Balay .ve 2078a30f8f8cSSatish Balay 2079a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2080a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20816d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20826d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2083a30f8f8cSSatish Balay 20846d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20856d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2086a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2087a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2088a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2089a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2090a30f8f8cSSatish Balay matrices. 2091a30f8f8cSSatish Balay 2092a30f8f8cSSatish Balay Level: intermediate 2093a30f8f8cSSatish Balay 2094a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2095a30f8f8cSSatish Balay 2096a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2097a30f8f8cSSatish Balay @*/ 2098a30f8f8cSSatish Balay 20997087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2100a30f8f8cSSatish Balay { 21016849ba73SBarry Smith PetscErrorCode ierr; 21021302d50aSBarry Smith PetscMPIInt size; 2103a30f8f8cSSatish Balay 2104a30f8f8cSSatish Balay PetscFunctionBegin; 2105f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2106f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2107273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2108273d9f13SBarry Smith if (size > 1) { 2109b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2110b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2111273d9f13SBarry Smith } else { 2112273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2113273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2114273d9f13SBarry Smith } 2115a30f8f8cSSatish Balay PetscFunctionReturn(0); 2116a30f8f8cSSatish Balay } 2117a30f8f8cSSatish Balay 2118a30f8f8cSSatish Balay 21194a2ae208SSatish Balay #undef __FUNCT__ 21204a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 21216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2122a30f8f8cSSatish Balay { 2123a30f8f8cSSatish Balay Mat mat; 2124a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2125dfbe8321SBarry Smith PetscErrorCode ierr; 2126d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2127387bc808SHong Zhang PetscScalar *array; 2128a30f8f8cSSatish Balay 2129a30f8f8cSSatish Balay PetscFunctionBegin; 2130a30f8f8cSSatish Balay *newmat = 0; 21317adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2132d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21337adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21341d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 213526283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 213626283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2137e1b6402fSHong Zhang 2138d5f3da31SBarry Smith mat->factortype = matin->factortype; 2139273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 214082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21417fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21427fff6886SHong Zhang 2143b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2144a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2145a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2146a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2147a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2148a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2149a30f8f8cSSatish Balay 2150899cda47SBarry Smith 2151a30f8f8cSSatish Balay a->size = oldmat->size; 2152a30f8f8cSSatish Balay a->rank = oldmat->rank; 2153a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2154a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2155a30f8f8cSSatish Balay a->rowindices = 0; 2156a30f8f8cSSatish Balay a->rowvalues = 0; 2157a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2158a30f8f8cSSatish Balay a->barray = 0; 2159899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2160899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2161899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2162899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2163a30f8f8cSSatish Balay 2164a30f8f8cSSatish Balay /* hash table stuff */ 2165a30f8f8cSSatish Balay a->ht = 0; 2166a30f8f8cSSatish Balay a->hd = 0; 2167a30f8f8cSSatish Balay a->ht_size = 0; 2168a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2169a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2170a30f8f8cSSatish Balay a->ht_total_ct = 0; 2171a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2172a30f8f8cSSatish Balay 2173899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2174a30f8f8cSSatish Balay if (oldmat->colmap) { 2175a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2176a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay #else 21781302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 217952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21801302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2181a30f8f8cSSatish Balay #endif 2182a30f8f8cSSatish Balay } else a->colmap = 0; 2183387bc808SHong Zhang 2184a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21851302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 218652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21871302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2188a30f8f8cSSatish Balay } else a->garray = 0; 2189a30f8f8cSSatish Balay 2190533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2191a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 219252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 219452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 219582327fa8SHong Zhang 219682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 219752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 219882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 219952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2200387bc808SHong Zhang 2201387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 22021ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2203387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2204387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 22051ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 22061ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2207387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 22081ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 220952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 221052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 221152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 221252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 221352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2214387bc808SHong Zhang 2215387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2216387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2217387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 221852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 221982327fa8SHong Zhang 2220a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 222152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 222352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 22247adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay *newmat = mat; 2226a30f8f8cSSatish Balay PetscFunctionReturn(0); 2227a30f8f8cSSatish Balay } 2228a30f8f8cSSatish Balay 22294a2ae208SSatish Balay #undef __FUNCT__ 22305bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2231112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 223295936485SShri Abhyankar { 223395936485SShri Abhyankar PetscErrorCode ierr; 223495936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 223595936485SShri Abhyankar PetscScalar *vals,*buf; 223695936485SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 223795936485SShri Abhyankar MPI_Status status; 223895936485SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 223995936485SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 224095936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 224195936485SShri Abhyankar PetscInt bs=1,Mbs,mbs,extra_rows; 224295936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 224395936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 224495936485SShri Abhyankar int fd; 224595936485SShri Abhyankar 224695936485SShri Abhyankar PetscFunctionBegin; 224795936485SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 224895936485SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 224995936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 225095936485SShri Abhyankar 225195936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 225295936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 225395936485SShri Abhyankar if (!rank) { 225495936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 225595936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 225695936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 225795936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 225895936485SShri Abhyankar } 225995936485SShri Abhyankar 226095936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 226195936485SShri Abhyankar 226295936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 226395936485SShri Abhyankar M = header[1]; N = header[2]; 226495936485SShri Abhyankar 226595936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 226695936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 226795936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 226895936485SShri Abhyankar 226995936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 227095936485SShri Abhyankar if (sizesset) { 227195936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 227295936485SShri Abhyankar } 2273abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2274abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 227595936485SShri Abhyankar 227695936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 227795936485SShri Abhyankar 227895936485SShri Abhyankar /* 227995936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 228095936485SShri Abhyankar divisible by the blocksize 228195936485SShri Abhyankar */ 228295936485SShri Abhyankar Mbs = M/bs; 228395936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 228495936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 228595936485SShri Abhyankar else Mbs++; 228695936485SShri Abhyankar if (extra_rows &&!rank) { 228795936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 228895936485SShri Abhyankar } 228995936485SShri Abhyankar 229095936485SShri Abhyankar /* determine ownership of all rows */ 229195936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 229295936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 229395936485SShri Abhyankar m = mbs*bs; 229495936485SShri Abhyankar } else { /* User Set */ 229595936485SShri Abhyankar m = newmat->rmap->n; 229695936485SShri Abhyankar mbs = m/bs; 229795936485SShri Abhyankar } 229895936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 229995936485SShri Abhyankar mmbs = PetscMPIIntCast(mbs); 230095936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 230195936485SShri Abhyankar rowners[0] = 0; 230295936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 230395936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 230495936485SShri Abhyankar rstart = rowners[rank]; 230595936485SShri Abhyankar rend = rowners[rank+1]; 230695936485SShri Abhyankar 230795936485SShri Abhyankar /* distribute row lengths to all processors */ 230895936485SShri Abhyankar ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 230995936485SShri Abhyankar if (!rank) { 231095936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 231195936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 231295936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 231395936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 231495936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 231595936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 231695936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 231795936485SShri Abhyankar } else { 231895936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 231995936485SShri Abhyankar } 232095936485SShri Abhyankar 232195936485SShri Abhyankar if (!rank) { /* procs[0] */ 232295936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 232395936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 232495936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 232595936485SShri Abhyankar for (i=0; i<size; i++) { 232695936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 232795936485SShri Abhyankar procsnz[i] += rowlengths[j]; 232895936485SShri Abhyankar } 232995936485SShri Abhyankar } 233095936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 233195936485SShri Abhyankar 233295936485SShri Abhyankar /* determine max buffer needed and allocate it */ 233395936485SShri Abhyankar maxnz = 0; 233495936485SShri Abhyankar for (i=0; i<size; i++) { 233595936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 233695936485SShri Abhyankar } 233795936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 233895936485SShri Abhyankar 233995936485SShri Abhyankar /* read in my part of the matrix column indices */ 234095936485SShri Abhyankar nz = procsnz[0]; 234195936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 234295936485SShri Abhyankar mycols = ibuf; 234395936485SShri Abhyankar if (size == 1) nz -= extra_rows; 234495936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 234595936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 234695936485SShri Abhyankar 234795936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 234895936485SShri Abhyankar for (i=1; i<size-1; i++) { 234995936485SShri Abhyankar nz = procsnz[i]; 235095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 235195936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 235295936485SShri Abhyankar } 235395936485SShri Abhyankar /* read in the stuff for the last proc */ 235495936485SShri Abhyankar if (size != 1) { 235595936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 235695936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 235795936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 235895936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 235995936485SShri Abhyankar } 236095936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 236195936485SShri Abhyankar } else { /* procs[i], i>0 */ 236295936485SShri Abhyankar /* determine buffer space needed for message */ 236395936485SShri Abhyankar nz = 0; 236495936485SShri Abhyankar for (i=0; i<m; i++) { 236595936485SShri Abhyankar nz += locrowlens[i]; 236695936485SShri Abhyankar } 236795936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 236895936485SShri Abhyankar mycols = ibuf; 236995936485SShri Abhyankar /* receive message of column indices*/ 237095936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 237195936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 237295936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 237395936485SShri Abhyankar } 237495936485SShri Abhyankar 237595936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 237695936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 237795936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 237895936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 237995936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 238095936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 238195936485SShri Abhyankar rowcount = 0; 238295936485SShri Abhyankar nzcount = 0; 238395936485SShri Abhyankar for (i=0; i<mbs; i++) { 238495936485SShri Abhyankar dcount = 0; 238595936485SShri Abhyankar odcount = 0; 238695936485SShri Abhyankar for (j=0; j<bs; j++) { 238795936485SShri Abhyankar kmax = locrowlens[rowcount]; 238895936485SShri Abhyankar for (k=0; k<kmax; k++) { 238995936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 239095936485SShri Abhyankar if (!mask[tmp]) { 239195936485SShri Abhyankar mask[tmp] = 1; 239295936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 239395936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 239495936485SShri Abhyankar } 239595936485SShri Abhyankar } 239695936485SShri Abhyankar rowcount++; 239795936485SShri Abhyankar } 239895936485SShri Abhyankar 239995936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 240095936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 240195936485SShri Abhyankar 240295936485SShri Abhyankar /* zero out the mask elements we set */ 240395936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 240495936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 240595936485SShri Abhyankar } 240695936485SShri Abhyankar if (!sizesset) { 240795936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 240895936485SShri Abhyankar } 240995936485SShri Abhyankar ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 241095936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 241195936485SShri Abhyankar 241295936485SShri Abhyankar if (!rank) { 241395936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 241495936485SShri Abhyankar /* read in my part of the matrix numerical values */ 241595936485SShri Abhyankar nz = procsnz[0]; 241695936485SShri Abhyankar vals = buf; 241795936485SShri Abhyankar mycols = ibuf; 241895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 241995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 242095936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 242195936485SShri Abhyankar 242295936485SShri Abhyankar /* insert into matrix */ 242395936485SShri Abhyankar jj = rstart*bs; 242495936485SShri Abhyankar for (i=0; i<m; i++) { 242595936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 242695936485SShri Abhyankar mycols += locrowlens[i]; 242795936485SShri Abhyankar vals += locrowlens[i]; 242895936485SShri Abhyankar jj++; 242995936485SShri Abhyankar } 243095936485SShri Abhyankar 243195936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 243295936485SShri Abhyankar for (i=1; i<size-1; i++) { 243395936485SShri Abhyankar nz = procsnz[i]; 243495936485SShri Abhyankar vals = buf; 243595936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 243695936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 243795936485SShri Abhyankar } 243895936485SShri Abhyankar /* the last proc */ 243995936485SShri Abhyankar if (size != 1){ 244095936485SShri Abhyankar nz = procsnz[i] - extra_rows; 244195936485SShri Abhyankar vals = buf; 244295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 244395936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 244495936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 244595936485SShri Abhyankar } 244695936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 244795936485SShri Abhyankar 244895936485SShri Abhyankar } else { 244995936485SShri Abhyankar /* receive numeric values */ 245095936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 245195936485SShri Abhyankar 245295936485SShri Abhyankar /* receive message of values*/ 245395936485SShri Abhyankar vals = buf; 245495936485SShri Abhyankar mycols = ibuf; 245595936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 245695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 245795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 245895936485SShri Abhyankar 245995936485SShri Abhyankar /* insert into matrix */ 246095936485SShri Abhyankar jj = rstart*bs; 246195936485SShri Abhyankar for (i=0; i<m; i++) { 246295936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 246395936485SShri Abhyankar mycols += locrowlens[i]; 246495936485SShri Abhyankar vals += locrowlens[i]; 246595936485SShri Abhyankar jj++; 246695936485SShri Abhyankar } 246795936485SShri Abhyankar } 246895936485SShri Abhyankar 246995936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 247095936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 247195936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 247295936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 247395936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 247495936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 247595936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 247695936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 247795936485SShri Abhyankar PetscFunctionReturn(0); 247895936485SShri Abhyankar } 247995936485SShri Abhyankar 248095936485SShri Abhyankar #undef __FUNCT__ 24814a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2482dcf5cc72SBarry Smith /*XXXXX@ 2483a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2484a30f8f8cSSatish Balay 2485a30f8f8cSSatish Balay Input Parameters: 2486a30f8f8cSSatish Balay . mat - the matrix 2487a30f8f8cSSatish Balay . fact - factor 2488a30f8f8cSSatish Balay 2489c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2490a30f8f8cSSatish Balay 2491a30f8f8cSSatish Balay Level: advanced 2492a30f8f8cSSatish Balay 2493a30f8f8cSSatish Balay Notes: 2494a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2495a30f8f8cSSatish Balay 2496a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2497a30f8f8cSSatish Balay 2498a30f8f8cSSatish Balay .seealso: MatSetOption() 2499dcf5cc72SBarry Smith @XXXXX*/ 2500dcf5cc72SBarry Smith 250124d5174aSHong Zhang 25024a2ae208SSatish Balay #undef __FUNCT__ 2503985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2504985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 250524d5174aSHong Zhang { 250624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2507f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2508ca54ac64SHong Zhang PetscReal atmp; 250987828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2510dfbe8321SBarry Smith PetscErrorCode ierr; 25111302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25121302d50aSBarry Smith PetscMPIInt rank,size; 25131302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 251487828ca2SBarry Smith PetscScalar *va; 25158a1c53f2SBarry Smith MatScalar *ba; 2516f4c0e9e4SHong Zhang MPI_Status stat; 251724d5174aSHong Zhang 251824d5174aSHong Zhang PetscFunctionBegin; 2519e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2520985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 25211ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2522f4c0e9e4SHong Zhang 25237adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 25247adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2525f4c0e9e4SHong Zhang 2526d0f46423SBarry Smith bs = A->rmap->bs; 2527f4c0e9e4SHong Zhang mbs = a->mbs; 2528f4c0e9e4SHong Zhang Mbs = a->Mbs; 2529f4c0e9e4SHong Zhang ba = b->a; 2530f4c0e9e4SHong Zhang bi = b->i; 2531f4c0e9e4SHong Zhang bj = b->j; 2532f4c0e9e4SHong Zhang 2533f4c0e9e4SHong Zhang /* find ownerships */ 2534d0f46423SBarry Smith rowners_bs = A->rmap->range; 2535f4c0e9e4SHong Zhang 2536f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 253782502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2538ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2539f4c0e9e4SHong Zhang 2540f4c0e9e4SHong Zhang /* row_max for B */ 2541b8475685SHong Zhang if (rank != size-1){ 2542f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2543f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2544f4c0e9e4SHong Zhang brow = bs*i; 2545f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2546f4c0e9e4SHong Zhang bcol = bs*(*bj); 2547f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2548ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 254904d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2550f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2551f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2552ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2553ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2554f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2555f4c0e9e4SHong Zhang } 2556f4c0e9e4SHong Zhang } 2557f4c0e9e4SHong Zhang bj++; 2558f4c0e9e4SHong Zhang } 2559f4c0e9e4SHong Zhang } 2560f4c0e9e4SHong Zhang 2561f4c0e9e4SHong Zhang /* send values to its owners */ 2562f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2563f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2564ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 25657adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2566ca54ac64SHong Zhang } 2567f4c0e9e4SHong Zhang } 2568f4c0e9e4SHong Zhang 2569f4c0e9e4SHong Zhang /* receive values */ 2570ca54ac64SHong Zhang if (rank){ 2571f4c0e9e4SHong Zhang rvalues = work; 2572ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2573f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 25747adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2575f4c0e9e4SHong Zhang /* process values */ 2576f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2577ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2578f4c0e9e4SHong Zhang } 2579f4c0e9e4SHong Zhang } 2580ca54ac64SHong Zhang } 2581f4c0e9e4SHong Zhang 25821ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2583ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 258424d5174aSHong Zhang PetscFunctionReturn(0); 258524d5174aSHong Zhang } 25862798e883SHong Zhang 25872798e883SHong Zhang #undef __FUNCT__ 258841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 258941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25902798e883SHong Zhang { 25912798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2592dfbe8321SBarry Smith PetscErrorCode ierr; 2593d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25943649974fSBarry Smith PetscScalar *x,*ptr,*from; 2595ffe4fb16SHong Zhang Vec bb1; 25963649974fSBarry Smith const PetscScalar *b; 2597ffe4fb16SHong Zhang 2598ffe4fb16SHong Zhang PetscFunctionBegin; 2599e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2600e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2601ffe4fb16SHong Zhang 2602a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 260341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2604a2b30743SBarry Smith PetscFunctionReturn(0); 2605a2b30743SBarry Smith } 2606a2b30743SBarry Smith 2607ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2608ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 260941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2610ffe4fb16SHong Zhang its--; 2611ffe4fb16SHong Zhang } 2612ffe4fb16SHong Zhang 2613ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2614ffe4fb16SHong Zhang while (its--){ 2615ffe4fb16SHong Zhang 2616ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2617ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2618ffe4fb16SHong Zhang 2619ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26201ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26211ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2622ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26231ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2624ffe4fb16SHong Zhang 2625efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2626ffe4fb16SHong Zhang 2627ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26281ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 26293649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2630ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26311ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2632ffe4fb16SHong Zhang 2633ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2634fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2635ffe4fb16SHong Zhang 2636ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26371ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2638a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2639ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2640ffe4fb16SHong Zhang 2641ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2642ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2643ffe4fb16SHong Zhang 2644ffe4fb16SHong Zhang /* local diagonal sweep */ 264541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2646ffe4fb16SHong Zhang } 2647ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2648fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 264941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2650fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 265141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2652fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2653fa22f6d0SBarry Smith Vec xx1; 2654ace3abfcSBarry Smith PetscBool hasop; 265520f1ed55SBarry Smith const PetscScalar *diag; 2656887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 265720f1ed55SBarry Smith PetscInt i,n; 2658fa22f6d0SBarry Smith 2659fa22f6d0SBarry Smith if (!mat->xx1) { 2660fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2661fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2662fa22f6d0SBarry Smith } 2663fa22f6d0SBarry Smith xx1 = mat->xx1; 2664fa22f6d0SBarry Smith bb1 = mat->bb1; 2665fa22f6d0SBarry Smith 266641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2667fa22f6d0SBarry Smith 2668fa22f6d0SBarry Smith if (!mat->diag) { 2669effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2670fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2671fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2672fa22f6d0SBarry Smith } 2673fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2674fa22f6d0SBarry Smith 2675fa22f6d0SBarry Smith if (hasop) { 2676fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2677887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 267820f1ed55SBarry Smith } else { 267920f1ed55SBarry Smith /* 268020f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 268120f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2682887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 268320f1ed55SBarry Smith */ 268420f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26853649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26863649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 268720f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 268820f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2689887ee2caSBarry Smith if (omega == 1.0) { 269020f1ed55SBarry Smith for (i=0; i<n; i++) { 269120f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 269220f1ed55SBarry Smith } 269320f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2694887ee2caSBarry Smith } else { 2695887ee2caSBarry Smith for (i=0; i<n; i++) { 2696887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2697887ee2caSBarry Smith } 2698887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2699887ee2caSBarry Smith } 270020f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27013649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27023649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 270320f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 270420f1ed55SBarry Smith } 2705fa22f6d0SBarry Smith 2706fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2707fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2708fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2709fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2710fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2711fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2712fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2713fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2714fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2715fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2716effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2717fa22f6d0SBarry Smith 2718fa22f6d0SBarry Smith /* local sweep */ 271941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2720fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2721ffe4fb16SHong Zhang } else { 2722e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2723ffe4fb16SHong Zhang } 2724ffe4fb16SHong Zhang PetscFunctionReturn(0); 2725ffe4fb16SHong Zhang } 2726ffe4fb16SHong Zhang 2727ffe4fb16SHong Zhang #undef __FUNCT__ 272841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 272941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2730ffe4fb16SHong Zhang { 2731ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2732dfbe8321SBarry Smith PetscErrorCode ierr; 27332798e883SHong Zhang Vec lvec1,bb1; 27342798e883SHong Zhang 27352798e883SHong Zhang PetscFunctionBegin; 2736e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2737e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27382798e883SHong Zhang 2739c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 27402798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 274141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27422798e883SHong Zhang its--; 27432798e883SHong Zhang } 27442798e883SHong Zhang 27452798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27462798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27472798e883SHong Zhang while (its--){ 2748ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27492798e883SHong Zhang 27502798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27512798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2752efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27532798e883SHong Zhang 2754ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27552798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2756ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27572798e883SHong Zhang 27582798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2759efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27602798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27612798e883SHong Zhang 2762ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27632798e883SHong Zhang 2764c14dc6b6SHong Zhang /* diagonal sweep */ 276541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27662798e883SHong Zhang } 27672798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 27682798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2769c14dc6b6SHong Zhang } else { 2770e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2771c14dc6b6SHong Zhang } 27722798e883SHong Zhang PetscFunctionReturn(0); 27732798e883SHong Zhang } 27742798e883SHong Zhang 2775dfb205c3SBarry Smith #undef __FUNCT__ 2776dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2777dfb205c3SBarry Smith /*@ 2778dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2779dfb205c3SBarry Smith CSR format the local rows. 2780dfb205c3SBarry Smith 2781dfb205c3SBarry Smith Collective on MPI_Comm 2782dfb205c3SBarry Smith 2783dfb205c3SBarry Smith Input Parameters: 2784dfb205c3SBarry Smith + comm - MPI communicator 2785dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2786dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2787dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2788dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2789dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2790dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2791dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2792dfb205c3SBarry Smith . i - row indices 2793dfb205c3SBarry Smith . j - column indices 2794dfb205c3SBarry Smith - a - matrix values 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith Output Parameter: 2797dfb205c3SBarry Smith . mat - the matrix 2798dfb205c3SBarry Smith 2799dfb205c3SBarry Smith Level: intermediate 2800dfb205c3SBarry Smith 2801dfb205c3SBarry Smith Notes: 2802dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2803dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2804dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2805dfb205c3SBarry Smith 2806dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2807dfb205c3SBarry Smith 2808dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2809dfb205c3SBarry Smith 2810dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 2811dfb205c3SBarry Smith MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithSplitArrays() 2812dfb205c3SBarry Smith @*/ 28137087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2814dfb205c3SBarry Smith { 2815dfb205c3SBarry Smith PetscErrorCode ierr; 2816dfb205c3SBarry Smith 2817dfb205c3SBarry Smith 2818dfb205c3SBarry Smith PetscFunctionBegin; 2819dfb205c3SBarry Smith if (i[0]) { 2820dfb205c3SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2821dfb205c3SBarry Smith } 2822dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2823dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2824dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2825dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2826dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2827dfb205c3SBarry Smith PetscFunctionReturn(0); 2828dfb205c3SBarry Smith } 2829dfb205c3SBarry Smith 2830dfb205c3SBarry Smith 2831dfb205c3SBarry Smith #undef __FUNCT__ 2832dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2833dfb205c3SBarry Smith /*@C 2834dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2835dfb205c3SBarry Smith (the default parallel PETSc format). 2836dfb205c3SBarry Smith 2837dfb205c3SBarry Smith Collective on MPI_Comm 2838dfb205c3SBarry Smith 2839dfb205c3SBarry Smith Input Parameters: 2840dfb205c3SBarry Smith + A - the matrix 2841dfb205c3SBarry Smith . bs - the block size 2842dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2843dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2844dfb205c3SBarry Smith - v - optional values in the matrix 2845dfb205c3SBarry Smith 2846dfb205c3SBarry Smith Level: developer 2847dfb205c3SBarry Smith 2848dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2849dfb205c3SBarry Smith 2850dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2851dfb205c3SBarry Smith @*/ 28527087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2853dfb205c3SBarry Smith { 28544ac538c5SBarry Smith PetscErrorCode ierr; 2855dfb205c3SBarry Smith 2856dfb205c3SBarry Smith PetscFunctionBegin; 28574ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2858dfb205c3SBarry Smith PetscFunctionReturn(0); 2859dfb205c3SBarry Smith } 2860dfb205c3SBarry Smith 2861dfb205c3SBarry Smith 2862