xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision cf37664f2dbf3effe674ec5ac2718028c1621ae0)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
13a30f8f8cSSatish Balay {
14f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
15dfbe8321SBarry Smith   PetscErrorCode ierr;
16a30f8f8cSSatish Balay 
17a30f8f8cSSatish Balay   PetscFunctionBegin;
18a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
20a30f8f8cSSatish Balay   PetscFunctionReturn(0);
21a30f8f8cSSatish Balay }
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
36d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
37a30f8f8cSSatish Balay   { \
38a30f8f8cSSatish Balay  \
39a30f8f8cSSatish Balay     brow = row/bs;  \
40a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
41a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
42a30f8f8cSSatish Balay     bcol = col/bs; \
43a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
44a30f8f8cSSatish Balay     low  = 0; high = nrow; \
45a30f8f8cSSatish Balay     while (high-low > 3) { \
46a30f8f8cSSatish Balay       t = (low+high)/2; \
47a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
48a30f8f8cSSatish Balay       else              low  = t; \
49a30f8f8cSSatish Balay     } \
50a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
51a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
52a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
53a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
54a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
55a30f8f8cSSatish Balay         else                    *bap  = value;  \
56a30f8f8cSSatish Balay         goto a_noinsert; \
57a30f8f8cSSatish Balay       } \
58a30f8f8cSSatish Balay     } \
59a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
60d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
61fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
62a30f8f8cSSatish Balay     N = nrow++ - 1;  \
63a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
64a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
65a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
66a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
67a30f8f8cSSatish Balay     } \
68a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
69a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
70a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
71e56f5c9eSBarry Smith     A->nonzerostate++;\
72a30f8f8cSSatish Balay a_noinsert:; \
73a30f8f8cSSatish Balay     ailen[brow] = nrow; \
74a30f8f8cSSatish Balay   }
75e5e170daSBarry Smith 
76d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
77a30f8f8cSSatish Balay   { \
78a30f8f8cSSatish Balay     brow = row/bs;  \
79a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
80a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
81a30f8f8cSSatish Balay     bcol = col/bs; \
82a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
83a30f8f8cSSatish Balay     low  = 0; high = nrow; \
84a30f8f8cSSatish Balay     while (high-low > 3) { \
85a30f8f8cSSatish Balay       t = (low+high)/2; \
86a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
87a30f8f8cSSatish Balay       else              low  = t; \
88a30f8f8cSSatish Balay     } \
89a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
90a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
91a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
92a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
93a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
94a30f8f8cSSatish Balay         else                    *bap  = value;  \
95a30f8f8cSSatish Balay         goto b_noinsert; \
96a30f8f8cSSatish Balay       } \
97a30f8f8cSSatish Balay     } \
98a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
99d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
100fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
101a30f8f8cSSatish Balay     N = nrow++ - 1;  \
102a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
103a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
104a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
105a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
106a30f8f8cSSatish Balay     } \
107a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
108a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
109a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
110e56f5c9eSBarry Smith     B->nonzerostate++;\
111a30f8f8cSSatish Balay b_noinsert:; \
112a30f8f8cSSatish Balay     bilen[brow] = nrow; \
113a30f8f8cSSatish Balay   }
114a30f8f8cSSatish Balay 
115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
116a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
117a30f8f8cSSatish Balay */
1184a2ae208SSatish Balay #undef __FUNCT__
119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
121a30f8f8cSSatish Balay {
122a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
123a30f8f8cSSatish Balay   MatScalar      value;
124ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
125dfbe8321SBarry Smith   PetscErrorCode ierr;
1261302d50aSBarry Smith   PetscInt       i,j,row,col;
127d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
128d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
129d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   /* Some Variables required in the macro */
132a30f8f8cSSatish Balay   Mat          A     = baij->A;
133a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1341302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
135a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
136a30f8f8cSSatish Balay 
137a30f8f8cSSatish Balay   Mat         B     = baij->B;
138a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1391302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
140a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
141a30f8f8cSSatish Balay 
1421302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1431302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
144a30f8f8cSSatish Balay   MatScalar *ap,*bap;
145a30f8f8cSSatish Balay 
146a30f8f8cSSatish Balay   /* for stash */
1470298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1480298fd71SBarry Smith   MatScalar *v_loc = NULL;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   PetscFunctionBegin;
151a30f8f8cSSatish Balay   if (!baij->donotstash) {
15259ffdab8SBarry Smith     if (n > baij->n_loc) {
15359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
155785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
156785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15726fbe8dcSKarl Rupp 
15859ffdab8SBarry Smith       baij->n_loc = n;
15959ffdab8SBarry Smith     }
16059ffdab8SBarry Smith     in_loc = baij->in_loc;
16159ffdab8SBarry Smith     v_loc  = baij->v_loc;
162a30f8f8cSSatish Balay   }
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
165a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
167e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
168a30f8f8cSSatish Balay #endif
169a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
170a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
171a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
17201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17301b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17526fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17601b2bd88SHong Zhang         }
177a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
178a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
179a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
180a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
181db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
182db4deed7SKarl Rupp           else             value = v[i+j*m];
183d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
184a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
185a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
187cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
188a30f8f8cSSatish Balay #endif
189a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
190a30f8f8cSSatish Balay           if (mat->was_assembled) {
191a30f8f8cSSatish Balay             if (!baij->colmap) {
192ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
193a30f8f8cSSatish Balay             }
194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
195a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19671730473SSatish Balay             col  = col - 1;
197a30f8f8cSSatish Balay #else
19871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
199a30f8f8cSSatish Balay #endif
200a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
201ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
202a30f8f8cSSatish Balay               col  =  in[j];
203a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
204a30f8f8cSSatish Balay               B    = baij->B;
205a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
206a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
207a30f8f8cSSatish Balay               ba   = b->a;
20871730473SSatish Balay             } else col += in[j]%bs;
209a30f8f8cSSatish Balay           } else col = in[j];
210db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
211db4deed7SKarl Rupp           else             value = v[i+j*m];
212d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
213a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
214a30f8f8cSSatish Balay         }
215a30f8f8cSSatish Balay       }
216a30f8f8cSSatish Balay     } else {  /* off processor entry */
2174cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
218a30f8f8cSSatish Balay       if (!baij->donotstash) {
2195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
220a30f8f8cSSatish Balay         n_loc          = 0;
221a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
222f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
223a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
224a30f8f8cSSatish Balay           if (roworiented) {
225a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
226a30f8f8cSSatish Balay           } else {
227a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
228a30f8f8cSSatish Balay           }
229a30f8f8cSSatish Balay           n_loc++;
230a30f8f8cSSatish Balay         }
231b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     }
234a30f8f8cSSatish Balay   }
235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
236a30f8f8cSSatish Balay }
237a30f8f8cSSatish Balay 
2384a2ae208SSatish Balay #undef __FUNCT__
23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined"
24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
24136bd2089SBarry Smith {
24236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
24336bd2089SBarry Smith   PetscErrorCode    ierr;
24436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
24536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
24636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
24736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
24836bd2089SBarry Smith   const PetscScalar *value     = v;
24936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
25036bd2089SBarry Smith 
25136bd2089SBarry Smith   PetscFunctionBegin;
25236bd2089SBarry Smith   if (col < row) {
25336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
25436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
25536bd2089SBarry Smith   }
25636bd2089SBarry Smith   rp   = aj + ai[row];
25736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
25836bd2089SBarry Smith   rmax = imax[row];
25936bd2089SBarry Smith   nrow = ailen[row];
26036bd2089SBarry Smith   value = v;
26136bd2089SBarry Smith   low   = 0;
26236bd2089SBarry Smith   high  = nrow;
26336bd2089SBarry Smith 
26436bd2089SBarry Smith   while (high-low > 7) {
26536bd2089SBarry Smith     t = (low+high)/2;
26636bd2089SBarry Smith     if (rp[t] > col) high = t;
26736bd2089SBarry Smith     else             low  = t;
26836bd2089SBarry Smith   }
26936bd2089SBarry Smith   for (i=low; i<high; i++) {
27036bd2089SBarry Smith     if (rp[i] > col) break;
27136bd2089SBarry Smith     if (rp[i] == col) {
27236bd2089SBarry Smith       bap = ap +  bs2*i;
27336bd2089SBarry Smith       if (roworiented) {
27436bd2089SBarry Smith         if (is == ADD_VALUES) {
27536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
27636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
27736bd2089SBarry Smith               bap[jj] += *value++;
27836bd2089SBarry Smith             }
27936bd2089SBarry Smith           }
28036bd2089SBarry Smith         } else {
28136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
28236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
28336bd2089SBarry Smith               bap[jj] = *value++;
28436bd2089SBarry Smith             }
28536bd2089SBarry Smith           }
28636bd2089SBarry Smith         }
28736bd2089SBarry Smith       } else {
28836bd2089SBarry Smith         if (is == ADD_VALUES) {
28936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29136bd2089SBarry Smith               *bap++ += *value++;
29236bd2089SBarry Smith             }
29336bd2089SBarry Smith           }
29436bd2089SBarry Smith         } else {
29536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29736bd2089SBarry Smith               *bap++  = *value++;
29836bd2089SBarry Smith             }
29936bd2089SBarry Smith           }
30036bd2089SBarry Smith         }
30136bd2089SBarry Smith       }
30236bd2089SBarry Smith       goto noinsert2;
30336bd2089SBarry Smith     }
30436bd2089SBarry Smith   }
30536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
30636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
30736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
30836bd2089SBarry Smith   N = nrow++ - 1; high++;
30936bd2089SBarry Smith   /* shift up all the later entries in this row */
31036bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
31136bd2089SBarry Smith     rp[ii+1] = rp[ii];
31236bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
31336bd2089SBarry Smith   }
31436bd2089SBarry Smith   if (N >= i) {
31536bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
31636bd2089SBarry Smith   }
31736bd2089SBarry Smith   rp[i] = col;
31836bd2089SBarry Smith   bap   = ap +  bs2*i;
31936bd2089SBarry Smith   if (roworiented) {
32036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32136bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
32236bd2089SBarry Smith         bap[jj] = *value++;
32336bd2089SBarry Smith       }
32436bd2089SBarry Smith     }
32536bd2089SBarry Smith   } else {
32636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32736bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
32836bd2089SBarry Smith         *bap++ = *value++;
32936bd2089SBarry Smith       }
33036bd2089SBarry Smith     }
33136bd2089SBarry Smith   }
33236bd2089SBarry Smith   noinsert2:;
33336bd2089SBarry Smith   ailen[row] = nrow;
33436bd2089SBarry Smith   PetscFunctionReturn(0);
33536bd2089SBarry Smith }
33636bd2089SBarry Smith 
33736bd2089SBarry Smith #undef __FUNCT__
33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined"
33936bd2089SBarry Smith /*
34036bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
34136bd2089SBarry Smith */
34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34336bd2089SBarry Smith {
34436bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
34536bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34636bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
34736bd2089SBarry Smith   PetscErrorCode    ierr;
34836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
35036bd2089SBarry Smith   const PetscScalar *value     = v;
35136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35236bd2089SBarry Smith 
35336bd2089SBarry Smith   PetscFunctionBegin;
35436bd2089SBarry Smith   rp   = aj + ai[row];
35536bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35636bd2089SBarry Smith   rmax = imax[row];
35736bd2089SBarry Smith   nrow = ailen[row];
35836bd2089SBarry Smith   low  = 0;
35936bd2089SBarry Smith   high = nrow;
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   while (high-low > 7) {
36236bd2089SBarry Smith     t = (low+high)/2;
36336bd2089SBarry Smith     if (rp[t] > col) high = t;
36436bd2089SBarry Smith     else             low  = t;
36536bd2089SBarry Smith   }
36636bd2089SBarry Smith   for (i=low; i<high; i++) {
36736bd2089SBarry Smith     if (rp[i] > col) break;
36836bd2089SBarry Smith     if (rp[i] == col) {
36936bd2089SBarry Smith       bap = ap +  bs2*i;
37036bd2089SBarry Smith       if (roworiented) {
37136bd2089SBarry Smith         if (is == ADD_VALUES) {
37236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37436bd2089SBarry Smith               bap[jj] += *value++;
37536bd2089SBarry Smith             }
37636bd2089SBarry Smith           }
37736bd2089SBarry Smith         } else {
37836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38036bd2089SBarry Smith               bap[jj] = *value++;
38136bd2089SBarry Smith             }
38236bd2089SBarry Smith           }
38336bd2089SBarry Smith         }
38436bd2089SBarry Smith       } else {
38536bd2089SBarry Smith         if (is == ADD_VALUES) {
38636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
38736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38836bd2089SBarry Smith               bap[jj] += value[jj];
38936bd2089SBarry Smith             }
39036bd2089SBarry Smith             bap += bs;
39136bd2089SBarry Smith           }
39236bd2089SBarry Smith         } else {
39336bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
39436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39536bd2089SBarry Smith               bap[jj]  = value[jj];
39636bd2089SBarry Smith             }
39736bd2089SBarry Smith             bap += bs;
39836bd2089SBarry Smith           }
39936bd2089SBarry Smith         }
40036bd2089SBarry Smith       }
40136bd2089SBarry Smith       goto noinsert2;
40236bd2089SBarry Smith     }
40336bd2089SBarry Smith   }
40436bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40536bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
40636bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40736bd2089SBarry Smith   N = nrow++ - 1; high++;
40836bd2089SBarry Smith   /* shift up all the later entries in this row */
40936bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
41036bd2089SBarry Smith     rp[ii+1] = rp[ii];
41136bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
41236bd2089SBarry Smith   }
41336bd2089SBarry Smith   if (N >= i) {
41436bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
41536bd2089SBarry Smith   }
41636bd2089SBarry Smith   rp[i] = col;
41736bd2089SBarry Smith   bap   = ap +  bs2*i;
41836bd2089SBarry Smith   if (roworiented) {
41936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
42136bd2089SBarry Smith         bap[jj] = *value++;
42236bd2089SBarry Smith       }
42336bd2089SBarry Smith     }
42436bd2089SBarry Smith   } else {
42536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42736bd2089SBarry Smith         *bap++ = *value++;
42836bd2089SBarry Smith       }
42936bd2089SBarry Smith     }
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   noinsert2:;
43236bd2089SBarry Smith   ailen[row] = nrow;
43336bd2089SBarry Smith   PetscFunctionReturn(0);
43436bd2089SBarry Smith }
43536bd2089SBarry Smith 
43636bd2089SBarry Smith #undef __FUNCT__
437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
43836bd2089SBarry Smith /*
43936bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
44036bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
44136bd2089SBarry Smith */
442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
443a30f8f8cSSatish Balay {
4440880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
445f15d580aSBarry Smith   const MatScalar *value;
446f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
447ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
448dfbe8321SBarry Smith   PetscErrorCode  ierr;
449899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
450899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
451d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
4520880e062SHong Zhang 
453a30f8f8cSSatish Balay   PetscFunctionBegin;
4540880e062SHong Zhang   if (!barray) {
455785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
4560880e062SHong Zhang     baij->barray = barray;
4570880e062SHong Zhang   }
4580880e062SHong Zhang 
4590880e062SHong Zhang   if (roworiented) {
4600880e062SHong Zhang     stepval = (n-1)*bs;
4610880e062SHong Zhang   } else {
4620880e062SHong Zhang     stepval = (m-1)*bs;
4630880e062SHong Zhang   }
4640880e062SHong Zhang   for (i=0; i<m; i++) {
4650880e062SHong Zhang     if (im[i] < 0) continue;
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
4680880e062SHong Zhang #endif
4690880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4700880e062SHong Zhang       row = im[i] - rstart;
4710880e062SHong Zhang       for (j=0; j<n; j++) {
472f3f98c53SJed Brown         if (im[i] > in[j]) {
473f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
474e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
475f3f98c53SJed Brown         }
4760880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4770880e062SHong Zhang         if ((roworiented) && (n == 1)) {
478f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4790880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
480f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4810880e062SHong Zhang         } else { /* Here a copy is required */
4820880e062SHong Zhang           if (roworiented) {
4830880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4840880e062SHong Zhang           } else {
4850880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4860880e062SHong Zhang           }
4870880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4880880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4890880e062SHong Zhang               *barray++ = *value++;
4900880e062SHong Zhang             }
4910880e062SHong Zhang           }
4920880e062SHong Zhang           barray -=bs2;
4930880e062SHong Zhang         }
4940880e062SHong Zhang 
4950880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
4960880e062SHong Zhang           col  = in[j] - cstart;
49736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
49826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
500bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5010880e062SHong Zhang #endif
5020880e062SHong Zhang         else {
5030880e062SHong Zhang           if (mat->was_assembled) {
5040880e062SHong Zhang             if (!baij->colmap) {
505ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5060880e062SHong Zhang             }
5070880e062SHong Zhang 
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5101302d50aSBarry Smith             { PetscInt data;
5110880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
512e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5130880e062SHong Zhang             }
5140880e062SHong Zhang #else
515e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5160880e062SHong Zhang #endif
5170880e062SHong Zhang #endif
5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5190880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5200880e062SHong Zhang             col  = (col - 1)/bs;
5210880e062SHong Zhang #else
5220880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5230880e062SHong Zhang #endif
5240880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
525ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5260880e062SHong Zhang               col  = in[j];
5270880e062SHong Zhang             }
52826fbe8dcSKarl Rupp           } else col = in[j];
52936bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5300880e062SHong Zhang         }
5310880e062SHong Zhang       }
5320880e062SHong Zhang     } else {
533bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
5340880e062SHong Zhang       if (!baij->donotstash) {
5350880e062SHong Zhang         if (roworiented) {
5360880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5370880e062SHong Zhang         } else {
5380880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5390880e062SHong Zhang         }
5400880e062SHong Zhang       }
5410880e062SHong Zhang     }
5420880e062SHong Zhang   }
5430880e062SHong Zhang   PetscFunctionReturn(0);
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
553d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
558e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
563e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
565a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data--;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
587a30f8f8cSSatish Balay }
588a30f8f8cSSatish Balay 
5894a2ae208SSatish Balay #undef __FUNCT__
5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
592a30f8f8cSSatish Balay {
593a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
594dfbe8321SBarry Smith   PetscErrorCode ierr;
595a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
596a30f8f8cSSatish Balay 
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay   if (baij->size == 1) {
599a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   } else {
601a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
602785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
603a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
604a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
605a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
607b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6088f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
609a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6100b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6110b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6120b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6130b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
614899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
615d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6160b8dc8d2SHong Zhang       MatScalar    *v;
6170b8dc8d2SHong Zhang 
618dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
619d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6200b8dc8d2SHong Zhang       /* Amat */
6210b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6220b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6230b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6240b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6250b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6260b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6270b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6280b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6290b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6300b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6310b8dc8d2SHong Zhang               /* non-diagonal block */
6320b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6330b8dc8d2SHong Zhang             }
6340b8dc8d2SHong Zhang           }
6350b8dc8d2SHong Zhang         }
63651f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
6370b8dc8d2SHong Zhang       }
6380b8dc8d2SHong Zhang       /* Bmat */
6390b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
6400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6420b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
6430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6440b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
6450b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6460b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6470b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6490b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6500b8dc8d2SHong Zhang             }
6510b8dc8d2SHong Zhang           }
6520b8dc8d2SHong Zhang         }
65351f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
6540b8dc8d2SHong Zhang       }
655b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6560b8dc8d2SHong Zhang       *norm = 0.0;
657d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
6580b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6590b8dc8d2SHong Zhang       }
66074ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
661f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
662a30f8f8cSSatish Balay   }
663a30f8f8cSSatish Balay   PetscFunctionReturn(0);
664a30f8f8cSSatish Balay }
665a30f8f8cSSatish Balay 
6664a2ae208SSatish Balay #undef __FUNCT__
6674a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
668dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
669a30f8f8cSSatish Balay {
670a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
671dfbe8321SBarry Smith   PetscErrorCode ierr;
6721302d50aSBarry Smith   PetscInt       nstash,reallocs;
673a30f8f8cSSatish Balay 
674a30f8f8cSSatish Balay   PetscFunctionBegin;
67526fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
676a30f8f8cSSatish Balay 
677d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
6781e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
679a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6801e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
681a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6821e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
683a30f8f8cSSatish Balay   PetscFunctionReturn(0);
684a30f8f8cSSatish Balay }
685a30f8f8cSSatish Balay 
6864a2ae208SSatish Balay #undef __FUNCT__
6874a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
688dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
689a30f8f8cSSatish Balay {
690a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
691a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
6926849ba73SBarry Smith   PetscErrorCode ierr;
69313f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
694e44c0bd4SBarry Smith   PetscInt       *row,*col;
695ace3abfcSBarry Smith   PetscBool      other_disassembled;
69613f74950SBarry Smith   PetscMPIInt    n;
697ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
698a30f8f8cSSatish Balay   MatScalar      *val;
699a30f8f8cSSatish Balay 
70091c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
701a30f8f8cSSatish Balay   PetscFunctionBegin;
7024cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
703a30f8f8cSSatish Balay     while (1) {
704a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
705a30f8f8cSSatish Balay       if (!flg) break;
706a30f8f8cSSatish Balay 
707a30f8f8cSSatish Balay       for (i=0; i<n;) {
708a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
70926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
71026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
71126fbe8dcSKarl Rupp         }
712a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
713a30f8f8cSSatish Balay         else       ncols = n-i;
714a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7154b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
716a30f8f8cSSatish Balay         i    = j;
717a30f8f8cSSatish Balay       }
718a30f8f8cSSatish Balay     }
719a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
721a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
722a30f8f8cSSatish Balay        restore the original flags */
723a30f8f8cSSatish Balay     r1 = baij->roworiented;
724a30f8f8cSSatish Balay     r2 = a->roworiented;
72591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
72626fbe8dcSKarl Rupp 
727a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
728a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
72926fbe8dcSKarl Rupp 
73091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
731a30f8f8cSSatish Balay     while (1) {
732a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
733a30f8f8cSSatish Balay       if (!flg) break;
734a30f8f8cSSatish Balay 
735a30f8f8cSSatish Balay       for (i=0; i<n;) {
736a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
73726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
73826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
73926fbe8dcSKarl Rupp         }
740a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
741a30f8f8cSSatish Balay         else       ncols = n-i;
7424b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
743a30f8f8cSSatish Balay         i    = j;
744a30f8f8cSSatish Balay       }
745a30f8f8cSSatish Balay     }
746a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
74726fbe8dcSKarl Rupp 
748a30f8f8cSSatish Balay     baij->roworiented = r1;
749a30f8f8cSSatish Balay     a->roworiented    = r2;
75026fbe8dcSKarl Rupp 
75191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
752a30f8f8cSSatish Balay   }
753a30f8f8cSSatish Balay 
754a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
756a30f8f8cSSatish Balay 
757a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
758a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
759a30f8f8cSSatish Balay   /*
760a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
761a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
762a30f8f8cSSatish Balay   */
763a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
764b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
765a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
766ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
767a30f8f8cSSatish Balay     }
768a30f8f8cSSatish Balay   }
769a30f8f8cSSatish Balay 
770a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
77140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
772a30f8f8cSSatish Balay   }
773a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
774a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
775a30f8f8cSSatish Balay 
77674ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77726fbe8dcSKarl Rupp 
778a30f8f8cSSatish Balay   baij->rowvalues = 0;
7794f9cfa9eSBarry Smith 
7804f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
7814f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
782e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
783b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
784e56f5c9eSBarry Smith   }
785a30f8f8cSSatish Balay   PetscFunctionReturn(0);
786a30f8f8cSSatish Balay }
787a30f8f8cSSatish Balay 
788383922c3SLisandro Dalcin extern PetscErrorCode MatView_SeqSBAIJ(Mat,PetscViewer);
789dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
7909804daf3SBarry Smith #include <petscdraw.h>
7914a2ae208SSatish Balay #undef __FUNCT__
7924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
794a30f8f8cSSatish Balay {
795a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
796dfbe8321SBarry Smith   PetscErrorCode    ierr;
797d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
7987da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
799ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
800b0a32e0cSBarry Smith   PetscViewer       sviewer;
801f3ef73ceSBarry Smith   PetscViewerFormat format;
802a30f8f8cSSatish Balay 
803a30f8f8cSSatish Balay   PetscFunctionBegin;
804251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
805251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
80632077d6dSBarry Smith   if (iascii) {
807b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
808456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
809a30f8f8cSSatish Balay       MatInfo info;
810ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
811a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8121575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
8137b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
814a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
815e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
816a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
817e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
818b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8191575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
82007d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
821a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
822a30f8f8cSSatish Balay       PetscFunctionReturn(0);
823fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
82477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
825a30f8f8cSSatish Balay       PetscFunctionReturn(0);
826c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
827c1490034SHong Zhang       PetscFunctionReturn(0);
828a30f8f8cSSatish Balay     }
829a30f8f8cSSatish Balay   }
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   if (isdraw) {
832b0a32e0cSBarry Smith     PetscDraw draw;
833ace3abfcSBarry Smith     PetscBool isnull;
834b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
83545f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
83645f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
837a30f8f8cSSatish Balay   }
838a30f8f8cSSatish Balay 
8397da1fb6eSBarry Smith   {
840a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
841a30f8f8cSSatish Balay     Mat          A;
84265d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84365d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
844d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
845a30f8f8cSSatish Balay     MatScalar    *a;
8463e219373SBarry Smith     const char   *matname;
847a30f8f8cSSatish Balay 
848f204ca49SKris Buschelman     /* Should this be the same type as mat? */
849ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
850a30f8f8cSSatish Balay     if (!rank) {
851f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
852a30f8f8cSSatish Balay     } else {
853f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
854a30f8f8cSSatish Balay     }
855f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
8560298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
8572b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
8583bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
859a30f8f8cSSatish Balay 
860a30f8f8cSSatish Balay     /* copy over the A part */
86165d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
862a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
863785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
864a30f8f8cSSatish Balay 
865a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
866e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
86726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
868a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
869e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
870a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
871dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
87226fbe8dcSKarl Rupp           col++;
87326fbe8dcSKarl Rupp           a += bs;
874a30f8f8cSSatish Balay         }
875a30f8f8cSSatish Balay       }
876a30f8f8cSSatish Balay     }
877a30f8f8cSSatish Balay     /* copy over the B part */
87865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
87965d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
880a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
881e9f7bc9eSHong Zhang 
882e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
88326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
884a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
885a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
886a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
887799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
88826fbe8dcSKarl Rupp           col++;
88926fbe8dcSKarl Rupp           a += bs;
890a30f8f8cSSatish Balay         }
891a30f8f8cSSatish Balay       }
892a30f8f8cSSatish Balay     }
893a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
894a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
895a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
896a30f8f8cSSatish Balay     /*
897a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
898b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
899a30f8f8cSSatish Balay     */
9003f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
901ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9023e219373SBarry Smith     if (!rank) {
903ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
904383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
905a30f8f8cSSatish Balay     }
9063f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9071575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9086bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
909a30f8f8cSSatish Balay   }
910a30f8f8cSSatish Balay   PetscFunctionReturn(0);
911a30f8f8cSSatish Balay }
912a30f8f8cSSatish Balay 
9134a2ae208SSatish Balay #undef __FUNCT__
914d1654148SHong Zhang #define __FUNCT__ "MatView_MPISBAIJ_Binary"
915d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer)
916d1654148SHong Zhang {
917d1654148SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
918d1654148SHong Zhang   Mat_SeqSBAIJ   *A = (Mat_SeqSBAIJ*)a->A->data;
919d1654148SHong Zhang   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
920d1654148SHong Zhang   PetscErrorCode ierr;
921d1654148SHong Zhang   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
922d1654148SHong Zhang   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
923d1654148SHong Zhang   int            fd;
924d1654148SHong Zhang   PetscScalar    *column_values;
925d1654148SHong Zhang   FILE           *file;
926d1654148SHong Zhang   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
927d1654148SHong Zhang   PetscInt       message_count,flowcontrolcount;
928d1654148SHong Zhang 
929d1654148SHong Zhang   PetscFunctionBegin;
930d1654148SHong Zhang   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
931d1654148SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
932d1654148SHong Zhang   nz   = bs2*(A->nz + B->nz);
933d1654148SHong Zhang   rlen = mat->rmap->n;
934d1654148SHong Zhang   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
935d1654148SHong Zhang   if (!rank) {
936d1654148SHong Zhang     header[0] = MAT_FILE_CLASSID;
937d1654148SHong Zhang     header[1] = mat->rmap->N;
938d1654148SHong Zhang     header[2] = mat->cmap->N;
939d1654148SHong Zhang 
940d1654148SHong Zhang     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
941d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
942d1654148SHong Zhang     /* get largest number of rows any processor has */
943d1654148SHong Zhang     range = mat->rmap->range;
944d1654148SHong Zhang     for (i=1; i<size; i++) {
945d1654148SHong Zhang       rlen = PetscMax(rlen,range[i+1] - range[i]);
946d1654148SHong Zhang     }
947d1654148SHong Zhang   } else {
948d1654148SHong Zhang     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
949d1654148SHong Zhang   }
950d1654148SHong Zhang 
951d1654148SHong Zhang   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
952d1654148SHong Zhang   /* compute lengths of each row  */
953d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
954d1654148SHong Zhang     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
955d1654148SHong Zhang   }
956d1654148SHong Zhang   /* store the row lengths to the file */
957d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
958d1654148SHong Zhang   if (!rank) {
959d1654148SHong Zhang     MPI_Status status;
960d1654148SHong Zhang     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
961d1654148SHong Zhang     rlen = (range[1] - range[0])/bs;
962d1654148SHong Zhang     for (i=0; i<rlen; i++) {
963d1654148SHong Zhang       for (j=0; j<bs; j++) {
964d1654148SHong Zhang         row_lens[i*bs+j] = bs*crow_lens[i];
965d1654148SHong Zhang       }
966d1654148SHong Zhang     }
967d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
968d1654148SHong Zhang     for (i=1; i<size; i++) {
969d1654148SHong Zhang       rlen = (range[i+1] - range[i])/bs;
970d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
971d1654148SHong Zhang       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
972d1654148SHong Zhang       for (k=0; k<rlen; k++) {
973d1654148SHong Zhang         for (j=0; j<bs; j++) {
974d1654148SHong Zhang           row_lens[k*bs+j] = bs*crow_lens[k];
975d1654148SHong Zhang         }
976d1654148SHong Zhang       }
977d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
978d1654148SHong Zhang     }
979d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
980d1654148SHong Zhang     ierr = PetscFree(row_lens);CHKERRQ(ierr);
981d1654148SHong Zhang   } else {
982d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
983d1654148SHong Zhang     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
984d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
985d1654148SHong Zhang   }
986d1654148SHong Zhang   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
987d1654148SHong Zhang 
988d1654148SHong Zhang   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
989d1654148SHong Zhang      information needed to make it for each row from a block row. This does require more communication but still not more than
990d1654148SHong Zhang      the communication needed for the nonzero values  */
991d1654148SHong Zhang   nzmax = nz; /*  space a largest processor needs */
992d1654148SHong Zhang   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
993d1654148SHong Zhang   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
994d1654148SHong Zhang   cnt   = 0;
995d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
996d1654148SHong Zhang     pcnt = cnt;
997d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
998d1654148SHong Zhang       if ((col = garray[B->j[j]]) > cstart) break;
999d1654148SHong Zhang       for (l=0; l<bs; l++) {
1000d1654148SHong Zhang         column_indices[cnt++] = bs*col+l;
1001d1654148SHong Zhang       }
1002d1654148SHong Zhang     }
1003d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1004d1654148SHong Zhang       for (l=0; l<bs; l++) {
1005d1654148SHong Zhang         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1006d1654148SHong Zhang       }
1007d1654148SHong Zhang     }
1008d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1009d1654148SHong Zhang       for (l=0; l<bs; l++) {
1010d1654148SHong Zhang         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1011d1654148SHong Zhang       }
1012d1654148SHong Zhang     }
1013d1654148SHong Zhang     len = cnt - pcnt;
1014d1654148SHong Zhang     for (k=1; k<bs; k++) {
1015d1654148SHong Zhang       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
1016d1654148SHong Zhang       cnt += len;
1017d1654148SHong Zhang     }
1018d1654148SHong Zhang   }
1019d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1020d1654148SHong Zhang 
1021d1654148SHong Zhang   /* store the columns to the file */
1022d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1023d1654148SHong Zhang   if (!rank) {
1024d1654148SHong Zhang     MPI_Status status;
1025d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1026d1654148SHong Zhang     for (i=1; i<size; i++) {
1027d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1028d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1029d1654148SHong Zhang       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1030d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1031d1654148SHong Zhang     }
1032d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1033d1654148SHong Zhang   } else {
1034d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1035d1654148SHong Zhang     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1036d1654148SHong Zhang     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1037d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1038d1654148SHong Zhang   }
1039d1654148SHong Zhang   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1040d1654148SHong Zhang 
1041d1654148SHong Zhang   /* load up the numerical values */
1042d1654148SHong Zhang   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1043d1654148SHong Zhang   cnt  = 0;
1044d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1045d1654148SHong Zhang     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1046d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1047d1654148SHong Zhang       if (garray[B->j[j]] > cstart) break;
1048d1654148SHong Zhang       for (l=0; l<bs; l++) {
1049d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1050d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1051d1654148SHong Zhang         }
1052d1654148SHong Zhang       }
1053d1654148SHong Zhang       cnt += bs;
1054d1654148SHong Zhang     }
1055d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1056d1654148SHong Zhang       for (l=0; l<bs; l++) {
1057d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1058d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1059d1654148SHong Zhang         }
1060d1654148SHong Zhang       }
1061d1654148SHong Zhang       cnt += bs;
1062d1654148SHong Zhang     }
1063d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1064d1654148SHong Zhang       for (l=0; l<bs; l++) {
1065d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1066d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1067d1654148SHong Zhang         }
1068d1654148SHong Zhang       }
1069d1654148SHong Zhang       cnt += bs;
1070d1654148SHong Zhang     }
1071d1654148SHong Zhang     cnt += (bs-1)*rlen;
1072d1654148SHong Zhang   }
1073d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1074d1654148SHong Zhang 
1075d1654148SHong Zhang   /* store the column values to the file */
1076d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1077d1654148SHong Zhang   if (!rank) {
1078d1654148SHong Zhang     MPI_Status status;
1079d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1080d1654148SHong Zhang     for (i=1; i<size; i++) {
1081d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1082d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1083d1654148SHong Zhang       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1084d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1085d1654148SHong Zhang     }
1086d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1087d1654148SHong Zhang   } else {
1088d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1089d1654148SHong Zhang     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1090d1654148SHong Zhang     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1091d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1092d1654148SHong Zhang   }
1093d1654148SHong Zhang   ierr = PetscFree(column_values);CHKERRQ(ierr);
1094d1654148SHong Zhang 
1095d1654148SHong Zhang   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1096d1654148SHong Zhang   if (file) {
1097d1654148SHong Zhang     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1098d1654148SHong Zhang   }
1099d1654148SHong Zhang   PetscFunctionReturn(0);
1100d1654148SHong Zhang }
1101d1654148SHong Zhang 
1102d1654148SHong Zhang #undef __FUNCT__
11034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
1104dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
1105a30f8f8cSSatish Balay {
1106dfbe8321SBarry Smith   PetscErrorCode ierr;
1107ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
1108a30f8f8cSSatish Balay 
1109a30f8f8cSSatish Balay   PetscFunctionBegin;
1110251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1111251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1112251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1113251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1114d1654148SHong Zhang   if (iascii || isdraw || issocket) {
1115a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1116d1654148SHong Zhang   } else if (isbinary) {
1117d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1118a30f8f8cSSatish Balay   }
1119a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1120a30f8f8cSSatish Balay }
1121a30f8f8cSSatish Balay 
11224a2ae208SSatish Balay #undef __FUNCT__
11234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
1124dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1125a30f8f8cSSatish Balay {
1126a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1127dfbe8321SBarry Smith   PetscErrorCode ierr;
1128a30f8f8cSSatish Balay 
1129a30f8f8cSSatish Balay   PetscFunctionBegin;
1130a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1131d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1132a30f8f8cSSatish Balay #endif
1133a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1134a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
11356bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
11366bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
11386bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1139a30f8f8cSSatish Balay #else
114005b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1141a30f8f8cSSatish Balay #endif
114205b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
11436bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
11446bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
11456bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
11466bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
11476bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
11486bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
11496bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
11506bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
11515755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
115205b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
115305b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
11546bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
11556bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
11566bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1157ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
115805b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1159a30f8f8cSSatish Balay #endif
116059ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
116159ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1162899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1163bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1164901853e0SKris Buschelman 
1165dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1166bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1167bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1168bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1169bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
11706214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
11716214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
11726214f412SHong Zhang #endif
1173a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1174a30f8f8cSSatish Balay }
1175a30f8f8cSSatish Balay 
11764a2ae208SSatish Balay #undef __FUNCT__
1177547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
1178547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1179547795f9SHong Zhang {
1180547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1181547795f9SHong Zhang   PetscErrorCode    ierr;
1182547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
11836de40e93SBarry Smith   PetscScalar       *from;
11846de40e93SBarry Smith   const PetscScalar *x;
1185547795f9SHong Zhang 
1186547795f9SHong Zhang   PetscFunctionBegin;
1187547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1188e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1189547795f9SHong Zhang 
1190547795f9SHong Zhang   /* diagonal part */
1191547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1192547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1193547795f9SHong Zhang 
1194547795f9SHong Zhang   /* subdiagonal part */
1195547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1196547795f9SHong Zhang 
1197547795f9SHong Zhang   /* copy x into the vec slvec0 */
1198547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
11996de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1200547795f9SHong Zhang 
1201547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1202547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
12036de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1204547795f9SHong Zhang 
1205547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1206547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1207547795f9SHong Zhang   /* supperdiagonal part */
1208547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1209547795f9SHong Zhang   PetscFunctionReturn(0);
1210547795f9SHong Zhang }
1211547795f9SHong Zhang 
1212547795f9SHong Zhang #undef __FUNCT__
1213a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
1214dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1215a9d4b620SHong Zhang {
1216a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1217dfbe8321SBarry Smith   PetscErrorCode    ierr;
1218d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1219d9ca1df4SBarry Smith   PetscScalar       *from;
1220d9ca1df4SBarry Smith   const PetscScalar *x;
1221a9d4b620SHong Zhang 
1222a9d4b620SHong Zhang   PetscFunctionBegin;
1223a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1224e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1225a9d4b620SHong Zhang 
1226a9d4b620SHong Zhang   /* diagonal part */
1227a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1228fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1229a9d4b620SHong Zhang 
1230a9d4b620SHong Zhang   /* subdiagonal part */
1231a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1232fc165ae2SBarry Smith 
1233a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12341ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1235d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1236a9d4b620SHong Zhang 
1237fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1238fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1239d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1240fc165ae2SBarry Smith 
1241fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1242ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1243a9d4b620SHong Zhang   /* supperdiagonal part */
1244a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1245a9d4b620SHong Zhang   PetscFunctionReturn(0);
1246a9d4b620SHong Zhang }
1247a9d4b620SHong Zhang 
1248a9d4b620SHong Zhang #undef __FUNCT__
124940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
1250dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1251a30f8f8cSSatish Balay {
1252a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1253dfbe8321SBarry Smith   PetscErrorCode ierr;
12541302d50aSBarry Smith   PetscInt       nt;
1255a30f8f8cSSatish Balay 
1256a30f8f8cSSatish Balay   PetscFunctionBegin;
1257a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1258e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1259e7e72b3dSBarry Smith 
1260a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1261e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
126265d70643SHong Zhang 
1263ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1264b941877fSHong Zhang   /* do diagonal part */
1265b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1266b941877fSHong Zhang   /* do supperdiagonal part */
1267ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1268b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1269b941877fSHong Zhang   /* do subdiagonal part */
1270b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1271ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1272ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1273a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1274a30f8f8cSSatish Balay }
1275a30f8f8cSSatish Balay 
12764a2ae208SSatish Balay #undef __FUNCT__
12774a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1278dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1279a30f8f8cSSatish Balay {
1280de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1281dfbe8321SBarry Smith   PetscErrorCode    ierr;
1282d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1283d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1284d9ca1df4SBarry Smith   const PetscScalar *x;
1285a9d4b620SHong Zhang 
1286a9d4b620SHong Zhang   PetscFunctionBegin;
1287a9d4b620SHong Zhang   /*
1288ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
12890ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1290a9d4b620SHong Zhang   */
1291a9d4b620SHong Zhang   /* diagonal part */
1292a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
12932dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1294a9d4b620SHong Zhang 
1295a9d4b620SHong Zhang   /* subdiagonal part */
1296a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1297a9d4b620SHong Zhang 
1298a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12991ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1300d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1301a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
13021ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1303a9d4b620SHong Zhang 
1304ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1305d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1306ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1307a9d4b620SHong Zhang 
1308a9d4b620SHong Zhang   /* supperdiagonal part */
1309a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1310a9d4b620SHong Zhang   PetscFunctionReturn(0);
1311a9d4b620SHong Zhang }
1312a9d4b620SHong Zhang 
1313a9d4b620SHong Zhang #undef __FUNCT__
1314a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1315dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1316a9d4b620SHong Zhang {
1317a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1318dfbe8321SBarry Smith   PetscErrorCode ierr;
1319a30f8f8cSSatish Balay 
1320a30f8f8cSSatish Balay   PetscFunctionBegin;
1321ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1322b941877fSHong Zhang   /* do diagonal part */
1323b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1324b941877fSHong Zhang   /* do supperdiagonal part */
1325ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1326de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1327de8b6608SHong Zhang 
1328b941877fSHong Zhang   /* do subdiagonal part */
1329a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1330ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1331ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1332a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1333a30f8f8cSSatish Balay }
1334a30f8f8cSSatish Balay 
1335a30f8f8cSSatish Balay /*
1336a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1337a30f8f8cSSatish Balay    diagonal block
1338a30f8f8cSSatish Balay */
13394a2ae208SSatish Balay #undef __FUNCT__
13404a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1341dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1342a30f8f8cSSatish Balay {
1343a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1344dfbe8321SBarry Smith   PetscErrorCode ierr;
1345a30f8f8cSSatish Balay 
1346a30f8f8cSSatish Balay   PetscFunctionBegin;
1347e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1348a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1349a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1350a30f8f8cSSatish Balay }
1351a30f8f8cSSatish Balay 
13524a2ae208SSatish Balay #undef __FUNCT__
13534a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1354f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1355a30f8f8cSSatish Balay {
1356a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1357dfbe8321SBarry Smith   PetscErrorCode ierr;
1358a30f8f8cSSatish Balay 
1359a30f8f8cSSatish Balay   PetscFunctionBegin;
1360f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1361f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1362a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1363a30f8f8cSSatish Balay }
1364a30f8f8cSSatish Balay 
13654a2ae208SSatish Balay #undef __FUNCT__
13664a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
13671302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1368a30f8f8cSSatish Balay {
1369d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1370d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1371d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1372d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1373d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1374899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1375d0d4cfc2SHong Zhang 
1376a30f8f8cSSatish Balay   PetscFunctionBegin;
1377e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1378d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1379d0d4cfc2SHong Zhang 
1380d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1381d0d4cfc2SHong Zhang     /*
1382d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1383d0d4cfc2SHong Zhang     */
1384d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1385d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1386d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1387d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1388d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
138926fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1390d0d4cfc2SHong Zhang     }
1391dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1392d0d4cfc2SHong Zhang   }
1393d0d4cfc2SHong Zhang 
1394e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1395d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1396d0d4cfc2SHong Zhang 
1397d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1398d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1399d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1400d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1401d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1402d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1403d0d4cfc2SHong Zhang 
1404d0d4cfc2SHong Zhang   cmap = mat->garray;
1405d0d4cfc2SHong Zhang   if (v  || idx) {
1406d0d4cfc2SHong Zhang     if (nztot) {
1407d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1408d0d4cfc2SHong Zhang       PetscInt imark = -1;
1409d0d4cfc2SHong Zhang       if (v) {
1410d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1411d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1412d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1413d0d4cfc2SHong Zhang           else break;
1414d0d4cfc2SHong Zhang         }
1415d0d4cfc2SHong Zhang         imark = i;
1416d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1417d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1418d0d4cfc2SHong Zhang       }
1419d0d4cfc2SHong Zhang       if (idx) {
1420d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1421d0d4cfc2SHong Zhang         if (imark > -1) {
1422d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1423d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1424d0d4cfc2SHong Zhang           }
1425d0d4cfc2SHong Zhang         } else {
1426d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
142726fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1428d0d4cfc2SHong Zhang             else break;
1429d0d4cfc2SHong Zhang           }
1430d0d4cfc2SHong Zhang           imark = i;
1431d0d4cfc2SHong Zhang         }
1432d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1433d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1434d0d4cfc2SHong Zhang       }
1435d0d4cfc2SHong Zhang     } else {
1436d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1437d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1438d0d4cfc2SHong Zhang     }
1439d0d4cfc2SHong Zhang   }
1440d0d4cfc2SHong Zhang   *nz  = nztot;
1441d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1442d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1443a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1444a30f8f8cSSatish Balay }
1445a30f8f8cSSatish Balay 
14464a2ae208SSatish Balay #undef __FUNCT__
14474a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
14481302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1449a30f8f8cSSatish Balay {
1450a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1451a30f8f8cSSatish Balay 
1452a30f8f8cSSatish Balay   PetscFunctionBegin;
1453e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1454a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1455a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1456a30f8f8cSSatish Balay }
1457a30f8f8cSSatish Balay 
14584a2ae208SSatish Balay #undef __FUNCT__
1459d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1460d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1461d0d4cfc2SHong Zhang {
1462d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1463d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1464d0d4cfc2SHong Zhang 
1465d0d4cfc2SHong Zhang   PetscFunctionBegin;
1466d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1467d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1468d0d4cfc2SHong Zhang }
1469d0d4cfc2SHong Zhang #undef __FUNCT__
1470d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1471d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1472d0d4cfc2SHong Zhang {
1473d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1474d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1475d0d4cfc2SHong Zhang 
1476d0d4cfc2SHong Zhang   PetscFunctionBegin;
1477d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1478d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1479d0d4cfc2SHong Zhang }
1480d0d4cfc2SHong Zhang 
1481d0d4cfc2SHong Zhang #undef __FUNCT__
148299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
148399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
148499cafbc1SBarry Smith {
148599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
148699cafbc1SBarry Smith   PetscErrorCode ierr;
148799cafbc1SBarry Smith 
148899cafbc1SBarry Smith   PetscFunctionBegin;
148999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
149099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
149199cafbc1SBarry Smith   PetscFunctionReturn(0);
149299cafbc1SBarry Smith }
149399cafbc1SBarry Smith 
149499cafbc1SBarry Smith #undef __FUNCT__
149599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
149699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
149799cafbc1SBarry Smith {
149899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
149999cafbc1SBarry Smith   PetscErrorCode ierr;
150099cafbc1SBarry Smith 
150199cafbc1SBarry Smith   PetscFunctionBegin;
150299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
150399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
150499cafbc1SBarry Smith   PetscFunctionReturn(0);
150599cafbc1SBarry Smith }
150699cafbc1SBarry Smith 
150736032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
150836032a97SHong Zhang    Input: isrow       - distributed(parallel),
150936032a97SHong Zhang           iscol_local - locally owned (seq)
151036032a97SHong Zhang */
151199cafbc1SBarry Smith #undef __FUNCT__
151236032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
151336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
15148f46ffcaSHong Zhang {
15158f46ffcaSHong Zhang   PetscErrorCode ierr;
15168f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
15178f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
151836032a97SHong Zhang 
151936032a97SHong Zhang   PetscFunctionBegin;
15208f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
15218f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
15221098a8e8SHong Zhang   if (sz1 > sz2) {
15231098a8e8SHong Zhang     *flg = PETSC_FALSE;
15241098a8e8SHong Zhang     PetscFunctionReturn(0);
15251098a8e8SHong Zhang   }
15268f46ffcaSHong Zhang 
15278f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
15288f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15298f46ffcaSHong Zhang 
15308f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
15318f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
15328f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
15338f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
15348f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
15358f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
15368f46ffcaSHong Zhang 
15378f46ffcaSHong Zhang   nmatch=0;
15388f46ffcaSHong Zhang   k     = 0;
15398f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
15408f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
15418f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
15428f46ffcaSHong Zhang         k = j; nmatch++;
15438f46ffcaSHong Zhang         break;
15448f46ffcaSHong Zhang       }
15458f46ffcaSHong Zhang     }
15468f46ffcaSHong Zhang   }
15478f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
15488f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15498f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
15508f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
15511098a8e8SHong Zhang   if (nmatch < sz1) {
15521098a8e8SHong Zhang     *flg = PETSC_FALSE;
15531098a8e8SHong Zhang   } else {
15541098a8e8SHong Zhang     *flg = PETSC_TRUE;
15551098a8e8SHong Zhang   }
155636032a97SHong Zhang   PetscFunctionReturn(0);
15578f46ffcaSHong Zhang }
155836032a97SHong Zhang 
155936032a97SHong Zhang #undef __FUNCT__
156036032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
156136032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
156236032a97SHong Zhang {
156336032a97SHong Zhang   PetscErrorCode ierr;
156436032a97SHong Zhang   IS             iscol_local;
156536032a97SHong Zhang   PetscInt       csize;
156636032a97SHong Zhang   PetscBool      isequal;
156736032a97SHong Zhang 
156836032a97SHong Zhang   PetscFunctionBegin;
156936032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
157036032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
157136032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
157236032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
157336032a97SHong Zhang   } else {
157436032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
157536032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
157636032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
15778f46ffcaSHong Zhang   }
15788f46ffcaSHong Zhang 
15798f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
158036032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
15818f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
15828f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
15838f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
15848f46ffcaSHong Zhang   }
15858f46ffcaSHong Zhang   PetscFunctionReturn(0);
15868f46ffcaSHong Zhang }
15878f46ffcaSHong Zhang 
15888f46ffcaSHong Zhang #undef __FUNCT__
15894a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1590dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1591a30f8f8cSSatish Balay {
1592a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1593dfbe8321SBarry Smith   PetscErrorCode ierr;
1594a30f8f8cSSatish Balay 
1595a30f8f8cSSatish Balay   PetscFunctionBegin;
1596a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1597a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1599a30f8f8cSSatish Balay }
1600a30f8f8cSSatish Balay 
16014a2ae208SSatish Balay #undef __FUNCT__
16024a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1603dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1604a30f8f8cSSatish Balay {
1605a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1606a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1607dfbe8321SBarry Smith   PetscErrorCode ierr;
1608a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1609a30f8f8cSSatish Balay 
1610a30f8f8cSSatish Balay   PetscFunctionBegin;
1611d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
161226fbe8dcSKarl Rupp 
1613a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
161426fbe8dcSKarl Rupp 
1615a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1616a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
161726fbe8dcSKarl Rupp 
1618a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
161926fbe8dcSKarl Rupp 
1620a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1621a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1622a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1623a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1624a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1625a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1626a30f8f8cSSatish Balay     info->memory       = isend[3];
1627a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1628a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1629b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
163026fbe8dcSKarl Rupp 
1631a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1632a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1633a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1634a30f8f8cSSatish Balay     info->memory       = irecv[3];
1635a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1636a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1637b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
163826fbe8dcSKarl Rupp 
1639a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1640a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1641a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1642a30f8f8cSSatish Balay     info->memory       = irecv[3];
1643a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1644f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1645a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1646a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1647a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1648a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1649a30f8f8cSSatish Balay }
1650a30f8f8cSSatish Balay 
16514a2ae208SSatish Balay #undef __FUNCT__
16524a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1653ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1654a30f8f8cSSatish Balay {
1655a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1656d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1657dfbe8321SBarry Smith   PetscErrorCode ierr;
1658a30f8f8cSSatish Balay 
1659a30f8f8cSSatish Balay   PetscFunctionBegin;
1660e98b92d7SKris Buschelman   switch (op) {
1661512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1662e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
166328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1664a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1665c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1666e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
166743674050SBarry Smith     MatCheckPreallocated(A,1);
16684e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16694e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1670e98b92d7SKris Buschelman     break;
1671e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
167243674050SBarry Smith     MatCheckPreallocated(A,1);
16734e0d8c25SBarry Smith     a->roworiented = flg;
167426fbe8dcSKarl Rupp 
16754e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16764e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1677e98b92d7SKris Buschelman     break;
16784e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1679290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1680e98b92d7SKris Buschelman     break;
1681e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
16824e0d8c25SBarry Smith     a->donotstash = flg;
1683e98b92d7SKris Buschelman     break;
1684e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
16854e0d8c25SBarry Smith     a->ht_flag = flg;
1686e98b92d7SKris Buschelman     break;
16879a4540c5SBarry Smith   case MAT_HERMITIAN:
168843674050SBarry Smith     MatCheckPreallocated(A,1);
1689e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1690eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
169126fbe8dcSKarl Rupp 
1692547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1693eeffb40dSHong Zhang     break;
1694ffa07934SHong Zhang   case MAT_SPD:
1695ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1696ffa07934SHong Zhang     A->spd     = flg;
1697ffa07934SHong Zhang     if (flg) {
1698ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1699ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1700ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1701ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1702ffa07934SHong Zhang     }
1703ffa07934SHong Zhang     break;
170477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
170543674050SBarry Smith     MatCheckPreallocated(A,1);
1706eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1707eeffb40dSHong Zhang     break;
170877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
170943674050SBarry Smith     MatCheckPreallocated(A,1);
1710eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1711eeffb40dSHong Zhang     break;
17129a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1713e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1714290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
171577e54ba9SKris Buschelman     break;
1716d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
17174e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1718d0d4cfc2SHong Zhang     break;
1719d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
17204e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1721d0d4cfc2SHong Zhang     break;
1722d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
17234e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1724d0d4cfc2SHong Zhang     break;
1725e98b92d7SKris Buschelman   default:
1726e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1727a30f8f8cSSatish Balay   }
1728a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1729a30f8f8cSSatish Balay }
1730a30f8f8cSSatish Balay 
17314a2ae208SSatish Balay #undef __FUNCT__
17328115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1733fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1734a30f8f8cSSatish Balay {
1735dfbe8321SBarry Smith   PetscErrorCode ierr;
17366e111a19SKarl Rupp 
1737a30f8f8cSSatish Balay   PetscFunctionBegin;
1738*cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1739999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1740*cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1741*cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1742fc4dec0aSBarry Smith   }
17438115998fSBarry Smith   PetscFunctionReturn(0);
1744a30f8f8cSSatish Balay }
1745a30f8f8cSSatish Balay 
17464a2ae208SSatish Balay #undef __FUNCT__
17474a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1748dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1749a30f8f8cSSatish Balay {
1750a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1751a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1752dfbe8321SBarry Smith   PetscErrorCode ierr;
17535e90f9d9SHong Zhang   PetscInt       nv,m,n;
1754ace3abfcSBarry Smith   PetscBool      flg;
1755a30f8f8cSSatish Balay 
1756a30f8f8cSSatish Balay   PetscFunctionBegin;
1757a30f8f8cSSatish Balay   if (ll != rr) {
1758b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1759e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1760a30f8f8cSSatish Balay   }
1761b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1762b3bf805bSHong Zhang 
17635e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1764e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1765b3bf805bSHong Zhang 
17665e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1767e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
17685e90f9d9SHong Zhang 
1769ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17705e90f9d9SHong Zhang 
17715e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
17720298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
17735e90f9d9SHong Zhang 
17745e90f9d9SHong Zhang   /* scale the diagonal part */
1775a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1776a30f8f8cSSatish Balay 
17775e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1778ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17790298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1780a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1781a30f8f8cSSatish Balay }
1782a30f8f8cSSatish Balay 
17834a2ae208SSatish Balay #undef __FUNCT__
17844a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1785dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1786a30f8f8cSSatish Balay {
1787f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1788dfbe8321SBarry Smith   PetscErrorCode ierr;
1789a30f8f8cSSatish Balay 
1790a30f8f8cSSatish Balay   PetscFunctionBegin;
1791a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1792a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1793a30f8f8cSSatish Balay }
1794a30f8f8cSSatish Balay 
17956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1796a30f8f8cSSatish Balay 
17974a2ae208SSatish Balay #undef __FUNCT__
17984a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1799ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1800a30f8f8cSSatish Balay {
1801a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1802a30f8f8cSSatish Balay   Mat            a,b,c,d;
1803ace3abfcSBarry Smith   PetscBool      flg;
1804dfbe8321SBarry Smith   PetscErrorCode ierr;
1805a30f8f8cSSatish Balay 
1806a30f8f8cSSatish Balay   PetscFunctionBegin;
1807a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1808a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1809a30f8f8cSSatish Balay 
1810a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1811abc0a331SBarry Smith   if (flg) {
1812a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1813a30f8f8cSSatish Balay   }
1814b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1815a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1816a30f8f8cSSatish Balay }
1817a30f8f8cSSatish Balay 
18184a2ae208SSatish Balay #undef __FUNCT__
18193c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
18203c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
18213c896bc6SHong Zhang {
18223c896bc6SHong Zhang   PetscErrorCode ierr;
18233c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
18243c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
18253c896bc6SHong Zhang 
18263c896bc6SHong Zhang   PetscFunctionBegin;
18273c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18283c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1829d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
18303c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1831d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
18323c896bc6SHong Zhang   } else {
18333c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18343c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18353c896bc6SHong Zhang   }
18363c896bc6SHong Zhang   PetscFunctionReturn(0);
18373c896bc6SHong Zhang }
18383c896bc6SHong Zhang 
18393c896bc6SHong Zhang #undef __FUNCT__
18404994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
18414994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1842273d9f13SBarry Smith {
1843dfbe8321SBarry Smith   PetscErrorCode ierr;
1844273d9f13SBarry Smith 
1845273d9f13SBarry Smith   PetscFunctionBegin;
1846535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1847273d9f13SBarry Smith   PetscFunctionReturn(0);
1848273d9f13SBarry Smith }
1849a5e6ed63SBarry Smith 
18504fe895cdSHong Zhang #undef __FUNCT__
18514fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
18524fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18534fe895cdSHong Zhang {
18544fe895cdSHong Zhang   PetscErrorCode ierr;
18554fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
18564fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18574fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
18584fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
18594fe895cdSHong Zhang 
18604fe895cdSHong Zhang   PetscFunctionBegin;
18614fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18624fe895cdSHong Zhang     PetscScalar alpha = a;
18634fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
18644fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1865c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
18668b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
18674fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
18684fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1869c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
18708b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1871a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1872ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1873ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1874ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1875ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
18764fe895cdSHong Zhang   } else {
18774de5dceeSHong Zhang     Mat      B;
18784de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18794de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1880d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
18814de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
18824de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
18834de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
18844de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
18854de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
18864de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
18874de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
18884de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
18894de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
18904de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
18914de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
18924de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
189328be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
18944de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
18954de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1896d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
18974de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
18984fe895cdSHong Zhang   }
18994fe895cdSHong Zhang   PetscFunctionReturn(0);
19004fe895cdSHong Zhang }
19014fe895cdSHong Zhang 
1902a5e6ed63SBarry Smith #undef __FUNCT__
1903a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
19041302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1905a5e6ed63SBarry Smith {
19066849ba73SBarry Smith   PetscErrorCode ierr;
19071302d50aSBarry Smith   PetscInt       i;
1908afebec48SHong Zhang   PetscBool      flg;
1909a5e6ed63SBarry Smith 
19106849ba73SBarry Smith   PetscFunctionBegin;
1911afebec48SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1912a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1913a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1914afebec48SHong Zhang     if (!flg) {
1915b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1916a5e6ed63SBarry Smith     }
19174dcd73b1SHong Zhang   }
1918a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1919a5e6ed63SBarry Smith }
1920a5e6ed63SBarry Smith 
19217d68702bSBarry Smith #undef __FUNCT__
19227d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ"
19237d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
19247d68702bSBarry Smith {
19257d68702bSBarry Smith   PetscErrorCode ierr;
19267d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
19276f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
19287d68702bSBarry Smith 
19297d68702bSBarry Smith   PetscFunctionBegin;
19306f33a894SBarry Smith   if (!Y->preallocated) {
19317d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
19326f33a894SBarry Smith   } else if (!aij->nz) {
1933b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
19346f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1935b83222d8SBarry Smith     aij->nonew = nonew;
19367d68702bSBarry Smith   }
19377d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
19387d68702bSBarry Smith   PetscFunctionReturn(0);
19397d68702bSBarry Smith }
19407d68702bSBarry Smith 
19413b49f96aSBarry Smith #undef __FUNCT__
19423b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ"
19433b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
19443b49f96aSBarry Smith {
19453b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
19463b49f96aSBarry Smith   PetscErrorCode ierr;
19473b49f96aSBarry Smith 
19483b49f96aSBarry Smith   PetscFunctionBegin;
19493b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
19503b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
19513b49f96aSBarry Smith   if (d) {
19523b49f96aSBarry Smith     PetscInt rstart;
19533b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
19543b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
19553b49f96aSBarry Smith 
19563b49f96aSBarry Smith   }
19573b49f96aSBarry Smith   PetscFunctionReturn(0);
19583b49f96aSBarry Smith }
19593b49f96aSBarry Smith 
1960a5b7ff6bSBarry Smith #undef __FUNCT__
1961a5b7ff6bSBarry Smith #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1962a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1963a5b7ff6bSBarry Smith {
1964a5b7ff6bSBarry Smith   PetscFunctionBegin;
1965a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1966a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1967a5b7ff6bSBarry Smith }
19683b49f96aSBarry Smith 
1969a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
19703964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1971a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1972a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1973a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
197497304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1975431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1976431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1977a30f8f8cSSatish Balay                                        0,
1978a30f8f8cSSatish Balay                                        0,
1979a30f8f8cSSatish Balay                                        0,
198097304618SKris Buschelman                                /* 10*/ 0,
1981a30f8f8cSSatish Balay                                        0,
1982a30f8f8cSSatish Balay                                        0,
198341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1984a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
198597304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1986a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1987a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1988a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1989a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
199097304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1991a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1992a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1993a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1994d519adbfSMatthew Knepley                                /* 24*/ 0,
1995a30f8f8cSSatish Balay                                        0,
1996a30f8f8cSSatish Balay                                        0,
1997a30f8f8cSSatish Balay                                        0,
1998a30f8f8cSSatish Balay                                        0,
19994994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
2000b5df2d14SHong Zhang                                        0,
2001a30f8f8cSSatish Balay                                        0,
2002a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
2003a30f8f8cSSatish Balay                                        0,
2004d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
2005a30f8f8cSSatish Balay                                        0,
2006a30f8f8cSSatish Balay                                        0,
2007a30f8f8cSSatish Balay                                        0,
2008a30f8f8cSSatish Balay                                        0,
2009d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
2010a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
2011d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
2012a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
20133c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
2014d519adbfSMatthew Knepley                                /* 44*/ 0,
2015a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
20167d68702bSBarry Smith                                        MatShift_MPISBAIJ,
2017a30f8f8cSSatish Balay                                        0,
2018a30f8f8cSSatish Balay                                        0,
2019f73d5cc4SBarry Smith                                /* 49*/ 0,
2020a30f8f8cSSatish Balay                                        0,
2021a30f8f8cSSatish Balay                                        0,
2022a30f8f8cSSatish Balay                                        0,
2023a30f8f8cSSatish Balay                                        0,
2024d519adbfSMatthew Knepley                                /* 54*/ 0,
2025a30f8f8cSSatish Balay                                        0,
2026a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
2027a30f8f8cSSatish Balay                                        0,
2028a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
20298f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
2030a30f8f8cSSatish Balay                                        0,
2031a30f8f8cSSatish Balay                                        0,
2032357abbc8SBarry Smith                                        0,
203324d5174aSHong Zhang                                        0,
2034d519adbfSMatthew Knepley                                /* 64*/ 0,
203524d5174aSHong Zhang                                        0,
203624d5174aSHong Zhang                                        0,
203724d5174aSHong Zhang                                        0,
203824d5174aSHong Zhang                                        0,
2039d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
204024d5174aSHong Zhang                                        0,
204197304618SKris Buschelman                                        0,
204297304618SKris Buschelman                                        0,
204397304618SKris Buschelman                                        0,
2044d519adbfSMatthew Knepley                                /* 74*/ 0,
204597304618SKris Buschelman                                        0,
204697304618SKris Buschelman                                        0,
204797304618SKris Buschelman                                        0,
204897304618SKris Buschelman                                        0,
2049d519adbfSMatthew Knepley                                /* 79*/ 0,
205097304618SKris Buschelman                                        0,
205197304618SKris Buschelman                                        0,
205297304618SKris Buschelman                                        0,
20535bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
2054d519adbfSMatthew Knepley                                /* 84*/ 0,
2055865e5f61SKris Buschelman                                        0,
2056865e5f61SKris Buschelman                                        0,
2057865e5f61SKris Buschelman                                        0,
2058865e5f61SKris Buschelman                                        0,
2059d519adbfSMatthew Knepley                                /* 89*/ 0,
2060865e5f61SKris Buschelman                                        0,
2061865e5f61SKris Buschelman                                        0,
2062865e5f61SKris Buschelman                                        0,
2063865e5f61SKris Buschelman                                        0,
2064d519adbfSMatthew Knepley                                /* 94*/ 0,
2065865e5f61SKris Buschelman                                        0,
2066865e5f61SKris Buschelman                                        0,
206799cafbc1SBarry Smith                                        0,
206899cafbc1SBarry Smith                                        0,
2069d519adbfSMatthew Knepley                                /* 99*/ 0,
207099cafbc1SBarry Smith                                        0,
207199cafbc1SBarry Smith                                        0,
207299cafbc1SBarry Smith                                        0,
207399cafbc1SBarry Smith                                        0,
2074d519adbfSMatthew Knepley                                /*104*/ 0,
207599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
2076d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
2077d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
207895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
207995936485SShri Abhyankar                                /*109*/ 0,
208095936485SShri Abhyankar                                        0,
208195936485SShri Abhyankar                                        0,
208295936485SShri Abhyankar                                        0,
20833b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
208495936485SShri Abhyankar                                /*114*/ 0,
208595936485SShri Abhyankar                                        0,
208695936485SShri Abhyankar                                        0,
208795936485SShri Abhyankar                                        0,
208895936485SShri Abhyankar                                        0,
208995936485SShri Abhyankar                                /*119*/ 0,
209095936485SShri Abhyankar                                        0,
209195936485SShri Abhyankar                                        0,
20923964eb88SJed Brown                                        0,
20933964eb88SJed Brown                                        0,
20943964eb88SJed Brown                                /*124*/ 0,
20953964eb88SJed Brown                                        0,
20963964eb88SJed Brown                                        0,
20973964eb88SJed Brown                                        0,
20983964eb88SJed Brown                                        0,
20993964eb88SJed Brown                                /*129*/ 0,
21003964eb88SJed Brown                                        0,
21013964eb88SJed Brown                                        0,
21023964eb88SJed Brown                                        0,
21033964eb88SJed Brown                                        0,
21043964eb88SJed Brown                                /*134*/ 0,
21053964eb88SJed Brown                                        0,
21063964eb88SJed Brown                                        0,
21073964eb88SJed Brown                                        0,
21083964eb88SJed Brown                                        0,
210946533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2110f9426fe0SMark Adams                                        0,
211159f5e6ceSHong Zhang                                        0,
211259f5e6ceSHong Zhang                                        0,
211359f5e6ceSHong Zhang                                        0,
211459f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
211599cafbc1SBarry Smith };
2116a30f8f8cSSatish Balay 
21174a2ae208SSatish Balay #undef __FUNCT__
2118a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
2119b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2120a23d5eceSKris Buschelman {
2121a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
2122dfbe8321SBarry Smith   PetscErrorCode ierr;
2123535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
2124a23d5eceSKris Buschelman 
2125a23d5eceSKris Buschelman   PetscFunctionBegin;
212633d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
212726283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
212826283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2129e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2130899cda47SBarry Smith 
2131a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
2132d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2133d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
2134c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
2135a23d5eceSKris Buschelman 
2136d0f46423SBarry Smith   B->rmap->bs = bs;
2137a23d5eceSKris Buschelman   b->bs2      = bs*bs;
2138a23d5eceSKris Buschelman   b->mbs      = mbs;
2139a23d5eceSKris Buschelman   b->Mbs      = Mbs;
2140de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
2141de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
2142a23d5eceSKris Buschelman 
2143a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2144d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2145a23d5eceSKris Buschelman   }
2146d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2147d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2148a23d5eceSKris Buschelman 
2149d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2150d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2151a23d5eceSKris Buschelman 
2152cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2153cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2154cb7b82ddSBarry Smith #else
2155cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2156cb7b82ddSBarry Smith #endif
2157cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2158cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2159cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2160cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
2161cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
2162cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2163cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2164cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2165cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2166cb7b82ddSBarry Smith 
2167cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
2168cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2169cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2170cb7b82ddSBarry Smith   ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
2171cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2172cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2173cb7b82ddSBarry Smith 
2174526dfc15SBarry Smith   if (!B->preallocated) {
2175f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2176d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
21779c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
21783bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2179ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2180526dfc15SBarry Smith   }
2181a23d5eceSKris Buschelman 
2182526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2183526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
218426fbe8dcSKarl Rupp 
2185526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2186cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2187cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2188a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2189a23d5eceSKris Buschelman }
2190a23d5eceSKris Buschelman 
2191dfb205c3SBarry Smith #undef __FUNCT__
2192dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
2193dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2194dfb205c3SBarry Smith {
2195dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
2196dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2197dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2198dfb205c3SBarry Smith   PetscScalar    *values=0;
2199dfb205c3SBarry Smith   PetscErrorCode ierr;
2200dfb205c3SBarry Smith 
2201dfb205c3SBarry Smith   PetscFunctionBegin;
2202ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2203dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2204dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2205dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2206dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2207e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2208dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2209dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2210dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
2211dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2212dfb205c3SBarry Smith 
2213dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2214dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2215dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2216dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2217dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2218dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
2219dfb205c3SBarry Smith     JJ     = jj + ii[i];
2220dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
2221dfb205c3SBarry Smith       if (*JJ >= cstart) break;
2222dfb205c3SBarry Smith       JJ++;
2223dfb205c3SBarry Smith     }
2224dfb205c3SBarry Smith     d = 0;
2225dfb205c3SBarry Smith     for (; j<nz; j++) {
2226dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2227dfb205c3SBarry Smith       d++;
2228dfb205c3SBarry Smith     }
2229dfb205c3SBarry Smith     d_nnz[i] = d;
2230dfb205c3SBarry Smith     o_nnz[i] = nz - d;
2231dfb205c3SBarry Smith   }
2232dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2233dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2234dfb205c3SBarry Smith 
2235dfb205c3SBarry Smith   values = (PetscScalar*)V;
2236dfb205c3SBarry Smith   if (!values) {
2237785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2238dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2239dfb205c3SBarry Smith   }
2240dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2241dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2242dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2243dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2244dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2245dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2246dfb205c3SBarry Smith   }
2247dfb205c3SBarry Smith 
2248dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2249dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2250dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22517827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2252dfb205c3SBarry Smith   PetscFunctionReturn(0);
2253dfb205c3SBarry Smith }
2254dfb205c3SBarry Smith 
22550bad9183SKris Buschelman /*MC
2256fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2257828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2258828413b8SBarry Smith    the matrix is stored.
2259828413b8SBarry Smith 
2260828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2261828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
22620bad9183SKris Buschelman 
22630bad9183SKris Buschelman    Options Database Keys:
22640bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
22650bad9183SKris Buschelman 
22660bad9183SKris Buschelman   Level: beginner
22670bad9183SKris Buschelman 
22680bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
22690bad9183SKris Buschelman M*/
22700bad9183SKris Buschelman 
2271cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
2272aa5a9175SDahai Guo 
2273a23d5eceSKris Buschelman #undef __FUNCT__
22744a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
22758cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2276b5df2d14SHong Zhang {
2277b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2278dfbe8321SBarry Smith   PetscErrorCode ierr;
227994ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2280b5df2d14SHong Zhang 
2281b5df2d14SHong Zhang   PetscFunctionBegin;
2282b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2283b0a32e0cSBarry Smith   B->data = (void*)b;
2284b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2285b5df2d14SHong Zhang 
2286b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2287b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2288b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2289b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
229026fbe8dcSKarl Rupp 
2291ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2292ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2293b5df2d14SHong Zhang 
2294b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2295854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2296b5df2d14SHong Zhang 
2297b5df2d14SHong Zhang   /* build cache for off array entries formed */
2298ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
229926fbe8dcSKarl Rupp 
2300b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
23010298fd71SBarry Smith   b->colmap      = NULL;
23020298fd71SBarry Smith   b->garray      = NULL;
2303b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2304b5df2d14SHong Zhang 
2305b5df2d14SHong Zhang   /* stuff used in block assembly */
2306b5df2d14SHong Zhang   b->barray = 0;
2307b5df2d14SHong Zhang 
2308b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2309b5df2d14SHong Zhang   b->lvec    = 0;
2310b5df2d14SHong Zhang   b->Mvctx   = 0;
231140781036SHong Zhang   b->slvec0  = 0;
231240781036SHong Zhang   b->slvec0b = 0;
231340781036SHong Zhang   b->slvec1  = 0;
231440781036SHong Zhang   b->slvec1a = 0;
231540781036SHong Zhang   b->slvec1b = 0;
231640781036SHong Zhang   b->sMvctx  = 0;
2317b5df2d14SHong Zhang 
2318b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2319b5df2d14SHong Zhang   b->rowindices   = 0;
2320b5df2d14SHong Zhang   b->rowvalues    = 0;
2321b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2322b5df2d14SHong Zhang 
2323b5df2d14SHong Zhang   /* hash table stuff */
2324b5df2d14SHong Zhang   b->ht           = 0;
2325b5df2d14SHong Zhang   b->hd           = 0;
2326b5df2d14SHong Zhang   b->ht_size      = 0;
2327b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2328b5df2d14SHong Zhang   b->ht_fact      = 0;
2329b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2330b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2331b5df2d14SHong Zhang 
23327a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
23337a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
23347a868f3eSHong Zhang 
233559ffdab8SBarry Smith   b->in_loc = 0;
233659ffdab8SBarry Smith   b->v_loc  = 0;
233759ffdab8SBarry Smith   b->n_loc  = 0;
233894ae4db5SBarry Smith 
2339bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2340bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2341bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2342bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
23436214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
23446214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
23456214f412SHong Zhang #endif
2346aa5a9175SDahai Guo 
234723ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
234823ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
234923ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
235023ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
235126fbe8dcSKarl Rupp 
235217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
235394ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
235494ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
235594ae4db5SBarry Smith   if (flg) {
235694ae4db5SBarry Smith     PetscReal fact = 1.39;
235794ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
235894ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
235994ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
236094ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
236194ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
236294ae4db5SBarry Smith   }
236394ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2364b5df2d14SHong Zhang   PetscFunctionReturn(0);
2365b5df2d14SHong Zhang }
2366b5df2d14SHong Zhang 
2367209238afSKris Buschelman /*MC
2368002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2369209238afSKris Buschelman 
2370209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2371209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2372209238afSKris Buschelman 
2373209238afSKris Buschelman    Options Database Keys:
2374209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2375209238afSKris Buschelman 
2376209238afSKris Buschelman   Level: beginner
2377209238afSKris Buschelman 
2378209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2379209238afSKris Buschelman M*/
2380209238afSKris Buschelman 
23814a2ae208SSatish Balay #undef __FUNCT__
23824a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
2383b5df2d14SHong Zhang /*@C
2384b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2385b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2386b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2387b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2388b5df2d14SHong Zhang 
2389b5df2d14SHong Zhang    Collective on Mat
2390b5df2d14SHong Zhang 
2391b5df2d14SHong Zhang    Input Parameters:
23921c4f3114SJed Brown +  B - the matrix
2393bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2394bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2395b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2396b5df2d14SHong Zhang            submatrix  (same for all local rows)
2397b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
23986d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
23990298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
240095742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2401b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2402b5df2d14SHong Zhang            submatrix (same for all local rows).
2403b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2404c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
24050298fd71SBarry Smith            (possibly different for each block row) or NULL.
2406b5df2d14SHong Zhang 
2407b5df2d14SHong Zhang 
2408b5df2d14SHong Zhang    Options Database Keys:
2409b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2410b5df2d14SHong Zhang                      block calculations (much slower)
2411b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2412b5df2d14SHong Zhang 
2413b5df2d14SHong Zhang    Notes:
2414b5df2d14SHong Zhang 
2415b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2416b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2417b5df2d14SHong Zhang 
241849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
241949a6f317SBarry Smith 
2420b5df2d14SHong Zhang    Storage Information:
2421b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2422b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2423b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2424b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2425b5df2d14SHong Zhang 
2426b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2427b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
24280298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2429b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2430b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2431b5df2d14SHong Zhang 
2432aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2433aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2434aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2435aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2436aa95bbe8SBarry Smith 
2437b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2438b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2439b5df2d14SHong Zhang 
2440b5df2d14SHong Zhang .vb
2441b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2442a4b1a0f6SJed Brown           --------------------------
2443c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2444c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2445c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2446a4b1a0f6SJed Brown           --------------------------
2447b5df2d14SHong Zhang .ve
2448b5df2d14SHong Zhang 
2449b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2450b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
24516d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24526d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2453b5df2d14SHong Zhang 
24546d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24556d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2456c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2457c2fc9fa9SBarry Smith 
2458b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2459b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2460b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2461b5df2d14SHong Zhang    matrices.
2462b5df2d14SHong Zhang 
2463b5df2d14SHong Zhang    Level: intermediate
2464b5df2d14SHong Zhang 
2465b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2466b5df2d14SHong Zhang 
2467ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2468b5df2d14SHong Zhang @*/
24697087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2470b5df2d14SHong Zhang {
24714ac538c5SBarry Smith   PetscErrorCode ierr;
2472b5df2d14SHong Zhang 
2473b5df2d14SHong Zhang   PetscFunctionBegin;
24746ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
24756ba663aaSJed Brown   PetscValidType(B,1);
24766ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
24774ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2478b5df2d14SHong Zhang   PetscFunctionReturn(0);
2479b5df2d14SHong Zhang }
2480b5df2d14SHong Zhang 
24814a2ae208SSatish Balay #undef __FUNCT__
248269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2483a30f8f8cSSatish Balay /*@C
248469b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2485a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2486a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2487a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2488a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2489a30f8f8cSSatish Balay 
2490a30f8f8cSSatish Balay    Collective on MPI_Comm
2491a30f8f8cSSatish Balay 
2492a30f8f8cSSatish Balay    Input Parameters:
2493a30f8f8cSSatish Balay +  comm - MPI communicator
2494bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2495bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2496a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2497a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2498a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2499a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2500a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2501a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2502a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2503a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2504a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2505a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2506a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
25076d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
25080298fd71SBarry Smith            (possibly different for each block block row) or NULL.
250995742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
251095742e49SBarry Smith            set its value even if it is zero.
2511a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2512a30f8f8cSSatish Balay            submatrix (same for all local rows).
2513a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2514a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
25150298fd71SBarry Smith            each block row) or NULL.
2516a30f8f8cSSatish Balay 
2517a30f8f8cSSatish Balay    Output Parameter:
2518a30f8f8cSSatish Balay .  A - the matrix
2519a30f8f8cSSatish Balay 
2520a30f8f8cSSatish Balay    Options Database Keys:
2521a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2522a30f8f8cSSatish Balay                      block calculations (much slower)
2523a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2524a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2525a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2526a30f8f8cSSatish Balay 
2527175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2528ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2529175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2530175b88e8SBarry Smith 
2531a30f8f8cSSatish Balay    Notes:
2532d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
25336d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2534d1be2dadSMatthew Knepley 
2535a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2536a30f8f8cSSatish Balay    (possibly both).
2537a30f8f8cSSatish Balay 
2538a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2539a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2540a30f8f8cSSatish Balay 
254149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
254249a6f317SBarry Smith 
2543a30f8f8cSSatish Balay    Storage Information:
2544a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2545a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2546a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2547a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2548a30f8f8cSSatish Balay 
2549a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2550a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
25510298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2552a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2553a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2554a30f8f8cSSatish Balay 
2555a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2556a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2557a30f8f8cSSatish Balay 
2558a30f8f8cSSatish Balay .vb
2559a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2560a4b1a0f6SJed Brown           --------------------------
2561c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2562c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2563c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2564a4b1a0f6SJed Brown           --------------------------
2565a30f8f8cSSatish Balay .ve
2566a30f8f8cSSatish Balay 
2567a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2568a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
25696d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
25706d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2571a30f8f8cSSatish Balay 
25726d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
25736d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2574a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2575a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2576a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2577a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2578a30f8f8cSSatish Balay    matrices.
2579a30f8f8cSSatish Balay 
2580a30f8f8cSSatish Balay    Level: intermediate
2581a30f8f8cSSatish Balay 
2582a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2583a30f8f8cSSatish Balay 
258469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2585a30f8f8cSSatish Balay @*/
2586a30f8f8cSSatish Balay 
258769b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2588a30f8f8cSSatish Balay {
25896849ba73SBarry Smith   PetscErrorCode ierr;
25901302d50aSBarry Smith   PetscMPIInt    size;
2591a30f8f8cSSatish Balay 
2592a30f8f8cSSatish Balay   PetscFunctionBegin;
2593f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2594f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2595273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2596273d9f13SBarry Smith   if (size > 1) {
2597b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2598b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2599273d9f13SBarry Smith   } else {
2600273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2601273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2602273d9f13SBarry Smith   }
2603a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2604a30f8f8cSSatish Balay }
2605a30f8f8cSSatish Balay 
2606a30f8f8cSSatish Balay 
26074a2ae208SSatish Balay #undef __FUNCT__
26084a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
26096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2610a30f8f8cSSatish Balay {
2611a30f8f8cSSatish Balay   Mat            mat;
2612a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2613dfbe8321SBarry Smith   PetscErrorCode ierr;
2614d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2615387bc808SHong Zhang   PetscScalar    *array;
2616a30f8f8cSSatish Balay 
2617a30f8f8cSSatish Balay   PetscFunctionBegin;
2618a30f8f8cSSatish Balay   *newmat = 0;
261926fbe8dcSKarl Rupp 
2620ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2621d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
26227adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
26231d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
26241e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
26251e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2626e1b6402fSHong Zhang 
2627d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2628273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
262982327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
26307fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26317fff6886SHong Zhang 
2632b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2633a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2634a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2635a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2636a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2637a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2638a30f8f8cSSatish Balay 
2639899cda47SBarry Smith 
2640a30f8f8cSSatish Balay   a->size         = oldmat->size;
2641a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2642a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2643a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2644a30f8f8cSSatish Balay   a->rowindices   = 0;
2645a30f8f8cSSatish Balay   a->rowvalues    = 0;
2646a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2647a30f8f8cSSatish Balay   a->barray       = 0;
2648899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2649899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2650899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2651899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2652a30f8f8cSSatish Balay 
2653a30f8f8cSSatish Balay   /* hash table stuff */
2654a30f8f8cSSatish Balay   a->ht           = 0;
2655a30f8f8cSSatish Balay   a->hd           = 0;
2656a30f8f8cSSatish Balay   a->ht_size      = 0;
2657a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2658a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2659a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2660a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2661a30f8f8cSSatish Balay 
2662899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2663a30f8f8cSSatish Balay   if (oldmat->colmap) {
2664a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2665a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2666a30f8f8cSSatish Balay #else
2667854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
26683bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
26691302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2670a30f8f8cSSatish Balay #endif
2671a30f8f8cSSatish Balay   } else a->colmap = 0;
2672387bc808SHong Zhang 
2673a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2674785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
26753bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
26761302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2677a30f8f8cSSatish Balay   } else a->garray = 0;
2678a30f8f8cSSatish Balay 
2679ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2680a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
26813bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2682a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
26833bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
268482327fa8SHong Zhang 
268582327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
26863bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
268782327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
26883bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2689387bc808SHong Zhang 
2690387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
26911ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2692778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2693778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
26941ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
26951ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2696778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
26971ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
26983bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
26993bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
27003bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
27013bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
27023bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2703387bc808SHong Zhang 
2704387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2705387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2706387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
27073bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
270882327fa8SHong Zhang 
2709a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
27103bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2711a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
27123bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2713140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2714a30f8f8cSSatish Balay   *newmat = mat;
2715a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2716a30f8f8cSSatish Balay }
2717a30f8f8cSSatish Balay 
27184a2ae208SSatish Balay #undef __FUNCT__
27195bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2720112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
272195936485SShri Abhyankar {
272295936485SShri Abhyankar   PetscErrorCode ierr;
272395936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
272495936485SShri Abhyankar   PetscScalar    *vals,*buf;
2725ce94432eSBarry Smith   MPI_Comm       comm;
272695936485SShri Abhyankar   MPI_Status     status;
2727adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2728adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
272995936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
27303059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
273195936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2732461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
273395936485SShri Abhyankar   int            fd;
273495936485SShri Abhyankar 
273595936485SShri Abhyankar   PetscFunctionBegin;
2736c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2737c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2738ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
27390298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
27400298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
274195936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
27423059b6faSBarry Smith   if (bs < 0) bs = 1;
274395936485SShri Abhyankar 
274495936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
274595936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
274695936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
27475872f025SBarry Smith   if (!rank) {
274895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
274995936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
275002f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
275195936485SShri Abhyankar   }
275295936485SShri Abhyankar 
275395936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
275426fbe8dcSKarl Rupp   M    = header[1];
275526fbe8dcSKarl Rupp   N    = header[2];
275695936485SShri Abhyankar 
275795936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2758461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2759461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
276095936485SShri Abhyankar 
276195936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
276295936485SShri Abhyankar 
276395936485SShri Abhyankar   /*
276495936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
276595936485SShri Abhyankar      divisible by the blocksize
276695936485SShri Abhyankar   */
276795936485SShri Abhyankar   Mbs        = M/bs;
276895936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
276995936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
277095936485SShri Abhyankar   else                  Mbs++;
277195936485SShri Abhyankar   if (extra_rows &&!rank) {
277295936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
277395936485SShri Abhyankar   }
277495936485SShri Abhyankar 
277595936485SShri Abhyankar   /* determine ownership of all rows */
277695936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
277795936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
277895936485SShri Abhyankar     m   = mbs*bs;
277995936485SShri Abhyankar   } else { /* User Set */
278095936485SShri Abhyankar     m   = newmat->rmap->n;
278195936485SShri Abhyankar     mbs = m/bs;
278295936485SShri Abhyankar   }
2783dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
27844dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
278595936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
278695936485SShri Abhyankar   rowners[0] = 0;
278795936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
278895936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
278995936485SShri Abhyankar   rstart = rowners[rank];
279095936485SShri Abhyankar   rend   = rowners[rank+1];
279195936485SShri Abhyankar 
279295936485SShri Abhyankar   /* distribute row lengths to all processors */
2793785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
279495936485SShri Abhyankar   if (!rank) {
2795854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
279695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
279795936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2798785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
279995936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
280095936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
280195936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
280295936485SShri Abhyankar   } else {
280395936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
280495936485SShri Abhyankar   }
280595936485SShri Abhyankar 
280695936485SShri Abhyankar   if (!rank) {   /* procs[0] */
280795936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2808785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
280995936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
281095936485SShri Abhyankar     for (i=0; i<size; i++) {
281195936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
281295936485SShri Abhyankar         procsnz[i] += rowlengths[j];
281395936485SShri Abhyankar       }
281495936485SShri Abhyankar     }
281595936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
281695936485SShri Abhyankar 
281795936485SShri Abhyankar     /* determine max buffer needed and allocate it */
281895936485SShri Abhyankar     maxnz = 0;
281995936485SShri Abhyankar     for (i=0; i<size; i++) {
282095936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
282195936485SShri Abhyankar     }
2822785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
282395936485SShri Abhyankar 
282495936485SShri Abhyankar     /* read in my part of the matrix column indices  */
282595936485SShri Abhyankar     nz     = procsnz[0];
2826785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
282795936485SShri Abhyankar     mycols = ibuf;
282895936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
282995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
283026fbe8dcSKarl Rupp     if (size == 1) {
283126fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
283226fbe8dcSKarl Rupp     }
283395936485SShri Abhyankar 
283495936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
283595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
283695936485SShri Abhyankar       nz   = procsnz[i];
283795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
283895936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
283995936485SShri Abhyankar     }
284095936485SShri Abhyankar     /* read in the stuff for the last proc */
284195936485SShri Abhyankar     if (size != 1) {
284295936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
284395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
284495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
284595936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
284695936485SShri Abhyankar     }
284795936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
284895936485SShri Abhyankar   } else {  /* procs[i], i>0 */
284995936485SShri Abhyankar     /* determine buffer space needed for message */
285095936485SShri Abhyankar     nz = 0;
285126fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2852785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
285395936485SShri Abhyankar     mycols = ibuf;
285495936485SShri Abhyankar     /* receive message of column indices*/
285595936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
285695936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
285795936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
285895936485SShri Abhyankar   }
285995936485SShri Abhyankar 
286095936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2861dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2862dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
286395936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
286495936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
286595936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
286695936485SShri Abhyankar   rowcount = 0;
286795936485SShri Abhyankar   nzcount  = 0;
286895936485SShri Abhyankar   for (i=0; i<mbs; i++) {
286995936485SShri Abhyankar     dcount  = 0;
287095936485SShri Abhyankar     odcount = 0;
287195936485SShri Abhyankar     for (j=0; j<bs; j++) {
287295936485SShri Abhyankar       kmax = locrowlens[rowcount];
287395936485SShri Abhyankar       for (k=0; k<kmax; k++) {
287495936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
287595936485SShri Abhyankar         if (!mask[tmp]) {
287695936485SShri Abhyankar           mask[tmp] = 1;
287795936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
287895936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
287995936485SShri Abhyankar         }
288095936485SShri Abhyankar       }
288195936485SShri Abhyankar       rowcount++;
288295936485SShri Abhyankar     }
288395936485SShri Abhyankar 
288495936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
288595936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
288695936485SShri Abhyankar 
288795936485SShri Abhyankar     /* zero out the mask elements we set */
288895936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
288995936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
289095936485SShri Abhyankar   }
289195936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
289295936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
28936816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
289495936485SShri Abhyankar 
289595936485SShri Abhyankar   if (!rank) {
2896785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
289795936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
289895936485SShri Abhyankar     nz     = procsnz[0];
289995936485SShri Abhyankar     vals   = buf;
290095936485SShri Abhyankar     mycols = ibuf;
290195936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
290295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
290326fbe8dcSKarl Rupp     if (size == 1) {
290426fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
290526fbe8dcSKarl Rupp     }
290695936485SShri Abhyankar 
290795936485SShri Abhyankar     /* insert into matrix */
290895936485SShri Abhyankar     jj = rstart*bs;
290995936485SShri Abhyankar     for (i=0; i<m; i++) {
291095936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
291195936485SShri Abhyankar       mycols += locrowlens[i];
291295936485SShri Abhyankar       vals   += locrowlens[i];
291395936485SShri Abhyankar       jj++;
291495936485SShri Abhyankar     }
291595936485SShri Abhyankar 
291695936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
291795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
291895936485SShri Abhyankar       nz   = procsnz[i];
291995936485SShri Abhyankar       vals = buf;
292095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
292195936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
292295936485SShri Abhyankar     }
292395936485SShri Abhyankar     /* the last proc */
292495936485SShri Abhyankar     if (size != 1) {
292595936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
292695936485SShri Abhyankar       vals = buf;
292795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
292895936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
292995936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
293095936485SShri Abhyankar     }
293195936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
293295936485SShri Abhyankar 
293395936485SShri Abhyankar   } else {
293495936485SShri Abhyankar     /* receive numeric values */
2935785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
293695936485SShri Abhyankar 
293795936485SShri Abhyankar     /* receive message of values*/
293895936485SShri Abhyankar     vals   = buf;
293995936485SShri Abhyankar     mycols = ibuf;
294095936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
294195936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
294295936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
294395936485SShri Abhyankar 
294495936485SShri Abhyankar     /* insert into matrix */
294595936485SShri Abhyankar     jj = rstart*bs;
294695936485SShri Abhyankar     for (i=0; i<m; i++) {
294795936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
294895936485SShri Abhyankar       mycols += locrowlens[i];
294995936485SShri Abhyankar       vals   += locrowlens[i];
295095936485SShri Abhyankar       jj++;
295195936485SShri Abhyankar     }
295295936485SShri Abhyankar   }
295395936485SShri Abhyankar 
295495936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
295595936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
295695936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
295795936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
295895936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
295995936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
296095936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296195936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296295936485SShri Abhyankar   PetscFunctionReturn(0);
296395936485SShri Abhyankar }
296495936485SShri Abhyankar 
296595936485SShri Abhyankar #undef __FUNCT__
29664a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2967dcf5cc72SBarry Smith /*XXXXX@
2968a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2969a30f8f8cSSatish Balay 
2970a30f8f8cSSatish Balay    Input Parameters:
2971a30f8f8cSSatish Balay .  mat  - the matrix
2972a30f8f8cSSatish Balay .  fact - factor
2973a30f8f8cSSatish Balay 
2974c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2975a30f8f8cSSatish Balay 
2976a30f8f8cSSatish Balay    Level: advanced
2977a30f8f8cSSatish Balay 
2978a30f8f8cSSatish Balay   Notes:
2979a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2980a30f8f8cSSatish Balay 
2981a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2982a30f8f8cSSatish Balay 
2983a30f8f8cSSatish Balay .seealso: MatSetOption()
2984dcf5cc72SBarry Smith @XXXXX*/
2985dcf5cc72SBarry Smith 
298624d5174aSHong Zhang 
29874a2ae208SSatish Balay #undef __FUNCT__
2988985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2989985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
299024d5174aSHong Zhang {
299124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2992f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2993ca54ac64SHong Zhang   PetscReal      atmp;
299487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2995dfbe8321SBarry Smith   PetscErrorCode ierr;
29961302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
29971302d50aSBarry Smith   PetscMPIInt    rank,size;
29981302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
299987828ca2SBarry Smith   PetscScalar    *va;
30008a1c53f2SBarry Smith   MatScalar      *ba;
3001f4c0e9e4SHong Zhang   MPI_Status     stat;
300224d5174aSHong Zhang 
300324d5174aSHong Zhang   PetscFunctionBegin;
3004e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
30050298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
30061ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
3007f4c0e9e4SHong Zhang 
3008ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
3009ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
3010f4c0e9e4SHong Zhang 
3011d0f46423SBarry Smith   bs  = A->rmap->bs;
3012f4c0e9e4SHong Zhang   mbs = a->mbs;
3013f4c0e9e4SHong Zhang   Mbs = a->Mbs;
3014f4c0e9e4SHong Zhang   ba  = b->a;
3015f4c0e9e4SHong Zhang   bi  = b->i;
3016f4c0e9e4SHong Zhang   bj  = b->j;
3017f4c0e9e4SHong Zhang 
3018f4c0e9e4SHong Zhang   /* find ownerships */
3019d0f46423SBarry Smith   rowners_bs = A->rmap->range;
3020f4c0e9e4SHong Zhang 
3021f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
3022785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
3023ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
3024f4c0e9e4SHong Zhang 
3025f4c0e9e4SHong Zhang   /* row_max for B */
3026b8475685SHong Zhang   if (rank != size-1) {
3027f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
3028f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
3029f4c0e9e4SHong Zhang       brow  = bs*i;
3030f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
3031f4c0e9e4SHong Zhang         bcol = bs*(*bj);
3032f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
3033ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
303404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
3035f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
3036f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
3037ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
3038ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
3039f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
3040f4c0e9e4SHong Zhang           }
3041f4c0e9e4SHong Zhang         }
3042f4c0e9e4SHong Zhang         bj++;
3043f4c0e9e4SHong Zhang       }
3044f4c0e9e4SHong Zhang     }
3045f4c0e9e4SHong Zhang 
3046f4c0e9e4SHong Zhang     /* send values to its owners */
3047f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
3048f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
3049ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
3050ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
3051ca54ac64SHong Zhang     }
3052f4c0e9e4SHong Zhang   }
3053f4c0e9e4SHong Zhang 
3054f4c0e9e4SHong Zhang   /* receive values */
3055ca54ac64SHong Zhang   if (rank) {
3056f4c0e9e4SHong Zhang     rvalues = work;
3057ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
3058f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
3059ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
3060f4c0e9e4SHong Zhang       /* process values */
3061f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
3062ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
3063f4c0e9e4SHong Zhang       }
3064f4c0e9e4SHong Zhang     }
3065ca54ac64SHong Zhang   }
3066f4c0e9e4SHong Zhang 
30671ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
3068ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
306924d5174aSHong Zhang   PetscFunctionReturn(0);
307024d5174aSHong Zhang }
30712798e883SHong Zhang 
30722798e883SHong Zhang #undef __FUNCT__
307341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
307441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
30752798e883SHong Zhang {
30762798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
3077dfbe8321SBarry Smith   PetscErrorCode    ierr;
3078d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
30793649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
3080ffe4fb16SHong Zhang   Vec               bb1;
30813649974fSBarry Smith   const PetscScalar *b;
3082ffe4fb16SHong Zhang 
3083ffe4fb16SHong Zhang   PetscFunctionBegin;
3084e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3085e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
3086ffe4fb16SHong Zhang 
3087a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
308841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3089a2b30743SBarry Smith     PetscFunctionReturn(0);
3090a2b30743SBarry Smith   }
3091a2b30743SBarry Smith 
3092ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
3093ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
309441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
3095ffe4fb16SHong Zhang       its--;
3096ffe4fb16SHong Zhang     }
3097ffe4fb16SHong Zhang 
3098ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
3099ffe4fb16SHong Zhang     while (its--) {
3100ffe4fb16SHong Zhang 
3101ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
3102ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3103ffe4fb16SHong Zhang 
3104ffe4fb16SHong Zhang       /* copy xx into slvec0a */
31051ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
31061ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3107ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
31081ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
3109ffe4fb16SHong Zhang 
3110efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
3111ffe4fb16SHong Zhang 
3112ffe4fb16SHong Zhang       /* copy bb into slvec1a */
31131ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
31143649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
3115ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
31161ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
3117ffe4fb16SHong Zhang 
3118ffe4fb16SHong Zhang       /* set slvec1b = 0 */
3119fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3120ffe4fb16SHong Zhang 
3121ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
31221ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3123a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3124ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3125ffe4fb16SHong Zhang 
3126ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
3127ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
3128ffe4fb16SHong Zhang 
3129ffe4fb16SHong Zhang       /* local diagonal sweep */
313041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
3131ffe4fb16SHong Zhang     }
31326bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
3133fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
313441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3135fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
313641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3137fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
3138fa22f6d0SBarry Smith     Vec               xx1;
3139ace3abfcSBarry Smith     PetscBool         hasop;
314020f1ed55SBarry Smith     const PetscScalar *diag;
3141887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
314220f1ed55SBarry Smith     PetscInt          i,n;
3143fa22f6d0SBarry Smith 
3144fa22f6d0SBarry Smith     if (!mat->xx1) {
3145fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
3146fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
3147fa22f6d0SBarry Smith     }
3148fa22f6d0SBarry Smith     xx1 = mat->xx1;
3149fa22f6d0SBarry Smith     bb1 = mat->bb1;
3150fa22f6d0SBarry Smith 
315141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
3152fa22f6d0SBarry Smith 
3153fa22f6d0SBarry Smith     if (!mat->diag) {
3154effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
31552a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
3156fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
3157fa22f6d0SBarry Smith     }
3158fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
3159fa22f6d0SBarry Smith 
3160fa22f6d0SBarry Smith     if (hasop) {
3161fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
3162887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
316320f1ed55SBarry Smith     } else {
316420f1ed55SBarry Smith       /*
316520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
316620f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
3167887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
316820f1ed55SBarry Smith       */
316920f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31703649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31713649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
317220f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
317320f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
3174887ee2caSBarry Smith       if (omega == 1.0) {
317526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
317620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
3177887ee2caSBarry Smith       } else {
317826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
3179887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
3180887ee2caSBarry Smith       }
318120f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31823649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31833649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
318420f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
318520f1ed55SBarry Smith     }
3186fa22f6d0SBarry Smith 
3187fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
3188fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3189fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3190fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
3191fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3192fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
3193fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
3194fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3195fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3196fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3197effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
3198fa22f6d0SBarry Smith 
3199fa22f6d0SBarry Smith     /* local sweep */
320041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
3201fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
3202f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
3203ffe4fb16SHong Zhang   PetscFunctionReturn(0);
3204ffe4fb16SHong Zhang }
3205ffe4fb16SHong Zhang 
3206ffe4fb16SHong Zhang #undef __FUNCT__
320741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
320841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
3209ffe4fb16SHong Zhang {
3210ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
3211dfbe8321SBarry Smith   PetscErrorCode ierr;
32122798e883SHong Zhang   Vec            lvec1,bb1;
32132798e883SHong Zhang 
32142798e883SHong Zhang   PetscFunctionBegin;
3215e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3216e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
32172798e883SHong Zhang 
3218c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
32192798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
322041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
32212798e883SHong Zhang       its--;
32222798e883SHong Zhang     }
32232798e883SHong Zhang 
32242798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
32252798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
32262798e883SHong Zhang     while (its--) {
3227ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32282798e883SHong Zhang 
32292798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
32302798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3231efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
32322798e883SHong Zhang 
3233ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32342798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3235ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32362798e883SHong Zhang 
32372798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3238efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
32392798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
32402798e883SHong Zhang 
3241ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32422798e883SHong Zhang 
3243c14dc6b6SHong Zhang       /* diagonal sweep */
324441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
32452798e883SHong Zhang     }
32466bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
32476bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
32486bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
32492798e883SHong Zhang   PetscFunctionReturn(0);
32502798e883SHong Zhang }
32512798e883SHong Zhang 
3252dfb205c3SBarry Smith #undef __FUNCT__
3253dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
3254dfb205c3SBarry Smith /*@
3255dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3256dfb205c3SBarry Smith          CSR format the local rows.
3257dfb205c3SBarry Smith 
3258dfb205c3SBarry Smith    Collective on MPI_Comm
3259dfb205c3SBarry Smith 
3260dfb205c3SBarry Smith    Input Parameters:
3261dfb205c3SBarry Smith +  comm - MPI communicator
3262dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3263dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3264dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3265dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3266dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3267dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3268dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3269dfb205c3SBarry Smith .   i - row indices
3270dfb205c3SBarry Smith .   j - column indices
3271dfb205c3SBarry Smith -   a - matrix values
3272dfb205c3SBarry Smith 
3273dfb205c3SBarry Smith    Output Parameter:
3274dfb205c3SBarry Smith .   mat - the matrix
3275dfb205c3SBarry Smith 
3276dfb205c3SBarry Smith    Level: intermediate
3277dfb205c3SBarry Smith 
3278dfb205c3SBarry Smith    Notes:
3279dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3280dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3281dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3282dfb205c3SBarry Smith 
3283dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3284dfb205c3SBarry Smith 
3285dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3286dfb205c3SBarry Smith 
3287dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
328869b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3289dfb205c3SBarry Smith @*/
32907087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3291dfb205c3SBarry Smith {
3292dfb205c3SBarry Smith   PetscErrorCode ierr;
3293dfb205c3SBarry Smith 
3294dfb205c3SBarry Smith 
3295dfb205c3SBarry Smith   PetscFunctionBegin;
3296f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3297dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3298dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3299dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3300dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3301dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3302dfb205c3SBarry Smith   PetscFunctionReturn(0);
3303dfb205c3SBarry Smith }
3304dfb205c3SBarry Smith 
3305dfb205c3SBarry Smith 
3306dfb205c3SBarry Smith #undef __FUNCT__
3307dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
3308dfb205c3SBarry Smith /*@C
3309dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3310dfb205c3SBarry Smith    (the default parallel PETSc format).
3311dfb205c3SBarry Smith 
3312dfb205c3SBarry Smith    Collective on MPI_Comm
3313dfb205c3SBarry Smith 
3314dfb205c3SBarry Smith    Input Parameters:
33151c4f3114SJed Brown +  B - the matrix
3316dfb205c3SBarry Smith .  bs - the block size
3317dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3318dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3319dfb205c3SBarry Smith -  v - optional values in the matrix
3320dfb205c3SBarry Smith 
3321dfb205c3SBarry Smith    Level: developer
3322dfb205c3SBarry Smith 
3323dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3324dfb205c3SBarry Smith 
332569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3326dfb205c3SBarry Smith @*/
33277087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3328dfb205c3SBarry Smith {
33294ac538c5SBarry Smith   PetscErrorCode ierr;
3330dfb205c3SBarry Smith 
3331dfb205c3SBarry Smith   PetscFunctionBegin;
33324ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3333dfb205c3SBarry Smith   PetscFunctionReturn(0);
3334dfb205c3SBarry Smith }
3335dfb205c3SBarry Smith 
3336de4b53ebSHong Zhang #undef __FUNCT__
333710c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
333810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
33394dcd73b1SHong Zhang {
33404dcd73b1SHong Zhang   PetscErrorCode ierr;
334110c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
334210c56fdeSHong Zhang   PetscInt       *indx;
334310c56fdeSHong Zhang   PetscScalar    *values;
3344dfb205c3SBarry Smith 
33454dcd73b1SHong Zhang   PetscFunctionBegin;
33464dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
334710c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
334810c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
334910c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
335010c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
33514dcd73b1SHong Zhang 
335210c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
335310c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
335410c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
335510c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
335610c56fdeSHong Zhang     }
335710c56fdeSHong Zhang     /* Check sum(n) = Nbs */
3358b2566f29SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
335910c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
336010c56fdeSHong Zhang 
336110c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
336210c56fdeSHong Zhang     rstart -= mbs;
33634dcd73b1SHong Zhang 
33644dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
336510c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3366e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
336710c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
33684dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
33694dcd73b1SHong Zhang       nnz = nnz/bs;
33704dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
33714dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
33724dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
33734dcd73b1SHong Zhang     }
3374e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
33754dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
33764dcd73b1SHong Zhang 
33774dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
337810c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
33794dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
33804dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
33814dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
33824dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
33834dcd73b1SHong Zhang   }
33844dcd73b1SHong Zhang 
338510c56fdeSHong Zhang   /* numeric phase */
33864dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
338710c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
33884dcd73b1SHong Zhang 
3389e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
33904dcd73b1SHong Zhang   for (i=0; i<m; i++) {
33914dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
33924dcd73b1SHong Zhang     Ii   = i + rstart;
339310c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
33944dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
33954dcd73b1SHong Zhang   }
3396e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
339710c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
339810c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
33994dcd73b1SHong Zhang   PetscFunctionReturn(0);
34004dcd73b1SHong Zhang }
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