1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined" 24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 24136bd2089SBarry Smith { 24236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 24336bd2089SBarry Smith PetscErrorCode ierr; 24436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 24536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 24636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 24736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24836bd2089SBarry Smith const PetscScalar *value = v; 24936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 25036bd2089SBarry Smith 25136bd2089SBarry Smith PetscFunctionBegin; 25236bd2089SBarry Smith if (col < row) { 25336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 25436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 25536bd2089SBarry Smith } 25636bd2089SBarry Smith rp = aj + ai[row]; 25736bd2089SBarry Smith ap = aa + bs2*ai[row]; 25836bd2089SBarry Smith rmax = imax[row]; 25936bd2089SBarry Smith nrow = ailen[row]; 26036bd2089SBarry Smith value = v; 26136bd2089SBarry Smith low = 0; 26236bd2089SBarry Smith high = nrow; 26336bd2089SBarry Smith 26436bd2089SBarry Smith while (high-low > 7) { 26536bd2089SBarry Smith t = (low+high)/2; 26636bd2089SBarry Smith if (rp[t] > col) high = t; 26736bd2089SBarry Smith else low = t; 26836bd2089SBarry Smith } 26936bd2089SBarry Smith for (i=low; i<high; i++) { 27036bd2089SBarry Smith if (rp[i] > col) break; 27136bd2089SBarry Smith if (rp[i] == col) { 27236bd2089SBarry Smith bap = ap + bs2*i; 27336bd2089SBarry Smith if (roworiented) { 27436bd2089SBarry Smith if (is == ADD_VALUES) { 27536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27736bd2089SBarry Smith bap[jj] += *value++; 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } 28036bd2089SBarry Smith } else { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 28336bd2089SBarry Smith bap[jj] = *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } 28736bd2089SBarry Smith } else { 28836bd2089SBarry Smith if (is == ADD_VALUES) { 28936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29136bd2089SBarry Smith *bap++ += *value++; 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith } else { 29536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29736bd2089SBarry Smith *bap++ = *value++; 29836bd2089SBarry Smith } 29936bd2089SBarry Smith } 30036bd2089SBarry Smith } 30136bd2089SBarry Smith } 30236bd2089SBarry Smith goto noinsert2; 30336bd2089SBarry Smith } 30436bd2089SBarry Smith } 30536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 30636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 30736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30836bd2089SBarry Smith N = nrow++ - 1; high++; 30936bd2089SBarry Smith /* shift up all the later entries in this row */ 31036bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 31136bd2089SBarry Smith rp[ii+1] = rp[ii]; 31236bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 31336bd2089SBarry Smith } 31436bd2089SBarry Smith if (N >= i) { 31536bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 31636bd2089SBarry Smith } 31736bd2089SBarry Smith rp[i] = col; 31836bd2089SBarry Smith bap = ap + bs2*i; 31936bd2089SBarry Smith if (roworiented) { 32036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 32236bd2089SBarry Smith bap[jj] = *value++; 32336bd2089SBarry Smith } 32436bd2089SBarry Smith } 32536bd2089SBarry Smith } else { 32636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32836bd2089SBarry Smith *bap++ = *value++; 32936bd2089SBarry Smith } 33036bd2089SBarry Smith } 33136bd2089SBarry Smith } 33236bd2089SBarry Smith noinsert2:; 33336bd2089SBarry Smith ailen[row] = nrow; 33436bd2089SBarry Smith PetscFunctionReturn(0); 33536bd2089SBarry Smith } 33636bd2089SBarry Smith 33736bd2089SBarry Smith #undef __FUNCT__ 33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 33936bd2089SBarry Smith /* 34036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 34136bd2089SBarry Smith */ 34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34336bd2089SBarry Smith { 34436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscErrorCode ierr; 34836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 35036bd2089SBarry Smith const PetscScalar *value = v; 35136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35236bd2089SBarry Smith 35336bd2089SBarry Smith PetscFunctionBegin; 35436bd2089SBarry Smith rp = aj + ai[row]; 35536bd2089SBarry Smith ap = aa + bs2*ai[row]; 35636bd2089SBarry Smith rmax = imax[row]; 35736bd2089SBarry Smith nrow = ailen[row]; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith bap[jj] += value[jj]; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith bap += bs; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } else { 39336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 39436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39536bd2089SBarry Smith bap[jj] = value[jj]; 39636bd2089SBarry Smith } 39736bd2089SBarry Smith bap += bs; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith goto noinsert2; 40236bd2089SBarry Smith } 40336bd2089SBarry Smith } 40436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 40636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40736bd2089SBarry Smith N = nrow++ - 1; high++; 40836bd2089SBarry Smith /* shift up all the later entries in this row */ 40936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 41036bd2089SBarry Smith rp[ii+1] = rp[ii]; 41136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith if (N >= i) { 41436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp[i] = col; 41736bd2089SBarry Smith bap = ap + bs2*i; 41836bd2089SBarry Smith if (roworiented) { 41936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 42136bd2089SBarry Smith bap[jj] = *value++; 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith } else { 42536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42736bd2089SBarry Smith *bap++ = *value++; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith } 43036bd2089SBarry Smith } 43136bd2089SBarry Smith noinsert2:; 43236bd2089SBarry Smith ailen[row] = nrow; 43336bd2089SBarry Smith PetscFunctionReturn(0); 43436bd2089SBarry Smith } 43536bd2089SBarry Smith 43636bd2089SBarry Smith #undef __FUNCT__ 437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 43836bd2089SBarry Smith /* 43936bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 44036bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 44136bd2089SBarry Smith */ 442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 443a30f8f8cSSatish Balay { 4440880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 445f15d580aSBarry Smith const MatScalar *value; 446f15d580aSBarry Smith MatScalar *barray =baij->barray; 447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 450899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 451d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4520880e062SHong Zhang 453a30f8f8cSSatish Balay PetscFunctionBegin; 4540880e062SHong Zhang if (!barray) { 455785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4560880e062SHong Zhang baij->barray = barray; 4570880e062SHong Zhang } 4580880e062SHong Zhang 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang stepval = (n-1)*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang stepval = (m-1)*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (i=0; i<m; i++) { 4650880e062SHong Zhang if (im[i] < 0) continue; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4680880e062SHong Zhang #endif 4690880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4700880e062SHong Zhang row = im[i] - rstart; 4710880e062SHong Zhang for (j=0; j<n; j++) { 472f3f98c53SJed Brown if (im[i] > in[j]) { 473f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 474e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 475f3f98c53SJed Brown } 4760880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4770880e062SHong Zhang if ((roworiented) && (n == 1)) { 478f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4790880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 480f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4810880e062SHong Zhang } else { /* Here a copy is required */ 4820880e062SHong Zhang if (roworiented) { 4830880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4840880e062SHong Zhang } else { 4850880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4860880e062SHong Zhang } 4870880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4880880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4890880e062SHong Zhang *barray++ = *value++; 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang barray -=bs2; 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4960880e062SHong Zhang col = in[j] - cstart; 49736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 49826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 500bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang else { 5030880e062SHong Zhang if (mat->was_assembled) { 5040880e062SHong Zhang if (!baij->colmap) { 505ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5060880e062SHong Zhang } 5070880e062SHong Zhang 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5101302d50aSBarry Smith { PetscInt data; 5110880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 512e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5130880e062SHong Zhang } 5140880e062SHong Zhang #else 515e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5160880e062SHong Zhang #endif 5170880e062SHong Zhang #endif 5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5190880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5200880e062SHong Zhang col = (col - 1)/bs; 5210880e062SHong Zhang #else 5220880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5230880e062SHong Zhang #endif 5240880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 525ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5260880e062SHong Zhang col = in[j]; 5270880e062SHong Zhang } 52826fbe8dcSKarl Rupp } else col = in[j]; 52936bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5300880e062SHong Zhang } 5310880e062SHong Zhang } 5320880e062SHong Zhang } else { 533bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5340880e062SHong Zhang if (!baij->donotstash) { 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5370880e062SHong Zhang } else { 5380880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5390880e062SHong Zhang } 5400880e062SHong Zhang } 5410880e062SHong Zhang } 5420880e062SHong Zhang } 5430880e062SHong Zhang PetscFunctionReturn(0); 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 553d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 558e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 563e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data--; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 594dfbe8321SBarry Smith PetscErrorCode ierr; 595a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay if (baij->size == 1) { 599a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 600a30f8f8cSSatish Balay } else { 601a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 602785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 605a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 607b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6088f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 609a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6100b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6110b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6120b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6130b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 614899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 615d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6160b8dc8d2SHong Zhang MatScalar *v; 6170b8dc8d2SHong Zhang 618dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 619d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6200b8dc8d2SHong Zhang /* Amat */ 6210b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6220b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6230b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6240b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6250b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6260b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6270b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6280b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6290b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6300b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6310b8dc8d2SHong Zhang /* non-diagonal block */ 6320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6330b8dc8d2SHong Zhang } 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 63651f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 6370b8dc8d2SHong Zhang } 6380b8dc8d2SHong Zhang /* Bmat */ 6390b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6420b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6440b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6450b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6460b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6490b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6500b8dc8d2SHong Zhang } 6510b8dc8d2SHong Zhang } 6520b8dc8d2SHong Zhang } 65351f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 6540b8dc8d2SHong Zhang } 655b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6560b8dc8d2SHong Zhang *norm = 0.0; 657d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6580b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6590b8dc8d2SHong Zhang } 66074ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 661f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 6664a2ae208SSatish Balay #undef __FUNCT__ 6674a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 668dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 669a30f8f8cSSatish Balay { 670a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 671dfbe8321SBarry Smith PetscErrorCode ierr; 6721302d50aSBarry Smith PetscInt nstash,reallocs; 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay PetscFunctionBegin; 67526fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 676a30f8f8cSSatish Balay 677d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6781e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 679a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6801e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 681a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6821e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 683a30f8f8cSSatish Balay PetscFunctionReturn(0); 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay 6864a2ae208SSatish Balay #undef __FUNCT__ 6874a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 688dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 689a30f8f8cSSatish Balay { 690a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 691a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6926849ba73SBarry Smith PetscErrorCode ierr; 69313f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 694e44c0bd4SBarry Smith PetscInt *row,*col; 695ace3abfcSBarry Smith PetscBool other_disassembled; 69613f74950SBarry Smith PetscMPIInt n; 697ace3abfcSBarry Smith PetscBool r1,r2,r3; 698a30f8f8cSSatish Balay MatScalar *val; 699a30f8f8cSSatish Balay 70091c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 701a30f8f8cSSatish Balay PetscFunctionBegin; 7024cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 703a30f8f8cSSatish Balay while (1) { 704a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 705a30f8f8cSSatish Balay if (!flg) break; 706a30f8f8cSSatish Balay 707a30f8f8cSSatish Balay for (i=0; i<n;) { 708a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 70926fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 71026fbe8dcSKarl Rupp if (row[j] != rstart) break; 71126fbe8dcSKarl Rupp } 712a30f8f8cSSatish Balay if (j < n) ncols = j-i; 713a30f8f8cSSatish Balay else ncols = n-i; 714a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7154b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 716a30f8f8cSSatish Balay i = j; 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 720a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 721a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 722a30f8f8cSSatish Balay restore the original flags */ 723a30f8f8cSSatish Balay r1 = baij->roworiented; 724a30f8f8cSSatish Balay r2 = a->roworiented; 72591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 72626fbe8dcSKarl Rupp 727a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 728a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 72926fbe8dcSKarl Rupp 73091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 731a30f8f8cSSatish Balay while (1) { 732a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 733a30f8f8cSSatish Balay if (!flg) break; 734a30f8f8cSSatish Balay 735a30f8f8cSSatish Balay for (i=0; i<n;) { 736a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 73726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 73826fbe8dcSKarl Rupp if (row[j] != rstart) break; 73926fbe8dcSKarl Rupp } 740a30f8f8cSSatish Balay if (j < n) ncols = j-i; 741a30f8f8cSSatish Balay else ncols = n-i; 7424b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 743a30f8f8cSSatish Balay i = j; 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 74726fbe8dcSKarl Rupp 748a30f8f8cSSatish Balay baij->roworiented = r1; 749a30f8f8cSSatish Balay a->roworiented = r2; 75026fbe8dcSKarl Rupp 75191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay 754a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 756a30f8f8cSSatish Balay 757a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 758a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 759a30f8f8cSSatish Balay /* 760a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 761a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 762a30f8f8cSSatish Balay */ 763a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 764b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 765a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 766ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay 770a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 77140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 775a30f8f8cSSatish Balay 77674ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77726fbe8dcSKarl Rupp 778a30f8f8cSSatish Balay baij->rowvalues = 0; 7794f9cfa9eSBarry Smith 7804f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7814f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 782e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 783b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 784e56f5c9eSBarry Smith } 785a30f8f8cSSatish Balay PetscFunctionReturn(0); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay 788383922c3SLisandro Dalcin extern PetscErrorCode MatView_SeqSBAIJ(Mat,PetscViewer); 789dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7909804daf3SBarry Smith #include <petscdraw.h> 7914a2ae208SSatish Balay #undef __FUNCT__ 7924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 794a30f8f8cSSatish Balay { 795a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 796dfbe8321SBarry Smith PetscErrorCode ierr; 797d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 7987da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 799ace3abfcSBarry Smith PetscBool iascii,isdraw; 800b0a32e0cSBarry Smith PetscViewer sviewer; 801f3ef73ceSBarry Smith PetscViewerFormat format; 802a30f8f8cSSatish Balay 803a30f8f8cSSatish Balay PetscFunctionBegin; 804251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 805251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 80632077d6dSBarry Smith if (iascii) { 807b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 808456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 809a30f8f8cSSatish Balay MatInfo info; 810ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 811a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8121575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 8137b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 815e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 816a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 817e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 818b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8191575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 82007d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 822a30f8f8cSSatish Balay PetscFunctionReturn(0); 823fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 82477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 825a30f8f8cSSatish Balay PetscFunctionReturn(0); 826c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 827c1490034SHong Zhang PetscFunctionReturn(0); 828a30f8f8cSSatish Balay } 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay if (isdraw) { 832b0a32e0cSBarry Smith PetscDraw draw; 833ace3abfcSBarry Smith PetscBool isnull; 834b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 83545f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 83645f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 837a30f8f8cSSatish Balay } 838a30f8f8cSSatish Balay 8397da1fb6eSBarry Smith { 840a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 841a30f8f8cSSatish Balay Mat A; 84265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 844d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 845a30f8f8cSSatish Balay MatScalar *a; 8463e219373SBarry Smith const char *matname; 847a30f8f8cSSatish Balay 848f204ca49SKris Buschelman /* Should this be the same type as mat? */ 849ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 850a30f8f8cSSatish Balay if (!rank) { 851f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 852a30f8f8cSSatish Balay } else { 853f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 854a30f8f8cSSatish Balay } 855f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8560298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8572b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 859a30f8f8cSSatish Balay 860a30f8f8cSSatish Balay /* copy over the A part */ 86165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 862a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 863785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 864a30f8f8cSSatish Balay 865a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 866e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 86726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 868a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 869e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 870a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 871dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 87226fbe8dcSKarl Rupp col++; 87326fbe8dcSKarl Rupp a += bs; 874a30f8f8cSSatish Balay } 875a30f8f8cSSatish Balay } 876a30f8f8cSSatish Balay } 877a30f8f8cSSatish Balay /* copy over the B part */ 87865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 87965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 880a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 881e9f7bc9eSHong Zhang 882e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 88326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 884a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 885a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 886a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 887799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 88826fbe8dcSKarl Rupp col++; 88926fbe8dcSKarl Rupp a += bs; 890a30f8f8cSSatish Balay } 891a30f8f8cSSatish Balay } 892a30f8f8cSSatish Balay } 893a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 894a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 895a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 896a30f8f8cSSatish Balay /* 897a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 898b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 899a30f8f8cSSatish Balay */ 9003f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 901ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9023e219373SBarry Smith if (!rank) { 903ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 904383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 905a30f8f8cSSatish Balay } 9063f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9071575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9086bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 909a30f8f8cSSatish Balay } 910a30f8f8cSSatish Balay PetscFunctionReturn(0); 911a30f8f8cSSatish Balay } 912a30f8f8cSSatish Balay 9134a2ae208SSatish Balay #undef __FUNCT__ 914d1654148SHong Zhang #define __FUNCT__ "MatView_MPISBAIJ_Binary" 915d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer) 916d1654148SHong Zhang { 917d1654148SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 918d1654148SHong Zhang Mat_SeqSBAIJ *A = (Mat_SeqSBAIJ*)a->A->data; 919d1654148SHong Zhang Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 920d1654148SHong Zhang PetscErrorCode ierr; 921d1654148SHong Zhang PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 922d1654148SHong Zhang PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 923d1654148SHong Zhang int fd; 924d1654148SHong Zhang PetscScalar *column_values; 925d1654148SHong Zhang FILE *file; 926d1654148SHong Zhang PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 927d1654148SHong Zhang PetscInt message_count,flowcontrolcount; 928d1654148SHong Zhang 929d1654148SHong Zhang PetscFunctionBegin; 930d1654148SHong Zhang ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 931d1654148SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 932d1654148SHong Zhang nz = bs2*(A->nz + B->nz); 933d1654148SHong Zhang rlen = mat->rmap->n; 934d1654148SHong Zhang ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 935d1654148SHong Zhang if (!rank) { 936d1654148SHong Zhang header[0] = MAT_FILE_CLASSID; 937d1654148SHong Zhang header[1] = mat->rmap->N; 938d1654148SHong Zhang header[2] = mat->cmap->N; 939d1654148SHong Zhang 940d1654148SHong Zhang ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 941d1654148SHong Zhang ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 942d1654148SHong Zhang /* get largest number of rows any processor has */ 943d1654148SHong Zhang range = mat->rmap->range; 944d1654148SHong Zhang for (i=1; i<size; i++) { 945d1654148SHong Zhang rlen = PetscMax(rlen,range[i+1] - range[i]); 946d1654148SHong Zhang } 947d1654148SHong Zhang } else { 948d1654148SHong Zhang ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 949d1654148SHong Zhang } 950d1654148SHong Zhang 951d1654148SHong Zhang ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr); 952d1654148SHong Zhang /* compute lengths of each row */ 953d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 954d1654148SHong Zhang crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 955d1654148SHong Zhang } 956d1654148SHong Zhang /* store the row lengths to the file */ 957d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 958d1654148SHong Zhang if (!rank) { 959d1654148SHong Zhang MPI_Status status; 960d1654148SHong Zhang ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 961d1654148SHong Zhang rlen = (range[1] - range[0])/bs; 962d1654148SHong Zhang for (i=0; i<rlen; i++) { 963d1654148SHong Zhang for (j=0; j<bs; j++) { 964d1654148SHong Zhang row_lens[i*bs+j] = bs*crow_lens[i]; 965d1654148SHong Zhang } 966d1654148SHong Zhang } 967d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 968d1654148SHong Zhang for (i=1; i<size; i++) { 969d1654148SHong Zhang rlen = (range[i+1] - range[i])/bs; 970d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 971d1654148SHong Zhang ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 972d1654148SHong Zhang for (k=0; k<rlen; k++) { 973d1654148SHong Zhang for (j=0; j<bs; j++) { 974d1654148SHong Zhang row_lens[k*bs+j] = bs*crow_lens[k]; 975d1654148SHong Zhang } 976d1654148SHong Zhang } 977d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 978d1654148SHong Zhang } 979d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 980d1654148SHong Zhang ierr = PetscFree(row_lens);CHKERRQ(ierr); 981d1654148SHong Zhang } else { 982d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 983d1654148SHong Zhang ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 984d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 985d1654148SHong Zhang } 986d1654148SHong Zhang ierr = PetscFree(crow_lens);CHKERRQ(ierr); 987d1654148SHong Zhang 988d1654148SHong Zhang /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 989d1654148SHong Zhang information needed to make it for each row from a block row. This does require more communication but still not more than 990d1654148SHong Zhang the communication needed for the nonzero values */ 991d1654148SHong Zhang nzmax = nz; /* space a largest processor needs */ 992d1654148SHong Zhang ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 993d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 994d1654148SHong Zhang cnt = 0; 995d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 996d1654148SHong Zhang pcnt = cnt; 997d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 998d1654148SHong Zhang if ((col = garray[B->j[j]]) > cstart) break; 999d1654148SHong Zhang for (l=0; l<bs; l++) { 1000d1654148SHong Zhang column_indices[cnt++] = bs*col+l; 1001d1654148SHong Zhang } 1002d1654148SHong Zhang } 1003d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1004d1654148SHong Zhang for (l=0; l<bs; l++) { 1005d1654148SHong Zhang column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1006d1654148SHong Zhang } 1007d1654148SHong Zhang } 1008d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1009d1654148SHong Zhang for (l=0; l<bs; l++) { 1010d1654148SHong Zhang column_indices[cnt++] = bs*garray[B->j[j]]+l; 1011d1654148SHong Zhang } 1012d1654148SHong Zhang } 1013d1654148SHong Zhang len = cnt - pcnt; 1014d1654148SHong Zhang for (k=1; k<bs; k++) { 1015d1654148SHong Zhang ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1016d1654148SHong Zhang cnt += len; 1017d1654148SHong Zhang } 1018d1654148SHong Zhang } 1019d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1020d1654148SHong Zhang 1021d1654148SHong Zhang /* store the columns to the file */ 1022d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1023d1654148SHong Zhang if (!rank) { 1024d1654148SHong Zhang MPI_Status status; 1025d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1026d1654148SHong Zhang for (i=1; i<size; i++) { 1027d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1028d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1029d1654148SHong Zhang ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1030d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1031d1654148SHong Zhang } 1032d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1033d1654148SHong Zhang } else { 1034d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1035d1654148SHong Zhang ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1036d1654148SHong Zhang ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1037d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1038d1654148SHong Zhang } 1039d1654148SHong Zhang ierr = PetscFree(column_indices);CHKERRQ(ierr); 1040d1654148SHong Zhang 1041d1654148SHong Zhang /* load up the numerical values */ 1042d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1043d1654148SHong Zhang cnt = 0; 1044d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1045d1654148SHong Zhang rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1046d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1047d1654148SHong Zhang if (garray[B->j[j]] > cstart) break; 1048d1654148SHong Zhang for (l=0; l<bs; l++) { 1049d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1050d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1051d1654148SHong Zhang } 1052d1654148SHong Zhang } 1053d1654148SHong Zhang cnt += bs; 1054d1654148SHong Zhang } 1055d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1056d1654148SHong Zhang for (l=0; l<bs; l++) { 1057d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1058d1654148SHong Zhang column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1059d1654148SHong Zhang } 1060d1654148SHong Zhang } 1061d1654148SHong Zhang cnt += bs; 1062d1654148SHong Zhang } 1063d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1064d1654148SHong Zhang for (l=0; l<bs; l++) { 1065d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1066d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1067d1654148SHong Zhang } 1068d1654148SHong Zhang } 1069d1654148SHong Zhang cnt += bs; 1070d1654148SHong Zhang } 1071d1654148SHong Zhang cnt += (bs-1)*rlen; 1072d1654148SHong Zhang } 1073d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1074d1654148SHong Zhang 1075d1654148SHong Zhang /* store the column values to the file */ 1076d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1077d1654148SHong Zhang if (!rank) { 1078d1654148SHong Zhang MPI_Status status; 1079d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1080d1654148SHong Zhang for (i=1; i<size; i++) { 1081d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1082d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1083d1654148SHong Zhang ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1084d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1085d1654148SHong Zhang } 1086d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1087d1654148SHong Zhang } else { 1088d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1089d1654148SHong Zhang ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1090d1654148SHong Zhang ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1091d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1092d1654148SHong Zhang } 1093d1654148SHong Zhang ierr = PetscFree(column_values);CHKERRQ(ierr); 1094d1654148SHong Zhang 1095d1654148SHong Zhang ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1096d1654148SHong Zhang if (file) { 1097d1654148SHong Zhang fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1098d1654148SHong Zhang } 1099d1654148SHong Zhang PetscFunctionReturn(0); 1100d1654148SHong Zhang } 1101d1654148SHong Zhang 1102d1654148SHong Zhang #undef __FUNCT__ 11034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 1104dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 1105a30f8f8cSSatish Balay { 1106dfbe8321SBarry Smith PetscErrorCode ierr; 1107ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 1108a30f8f8cSSatish Balay 1109a30f8f8cSSatish Balay PetscFunctionBegin; 1110251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1111251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1112251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1113251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1114d1654148SHong Zhang if (iascii || isdraw || issocket) { 1115a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1116d1654148SHong Zhang } else if (isbinary) { 1117d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1118a30f8f8cSSatish Balay } 1119a30f8f8cSSatish Balay PetscFunctionReturn(0); 1120a30f8f8cSSatish Balay } 1121a30f8f8cSSatish Balay 11224a2ae208SSatish Balay #undef __FUNCT__ 11234a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 1124dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1125a30f8f8cSSatish Balay { 1126a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1127dfbe8321SBarry Smith PetscErrorCode ierr; 1128a30f8f8cSSatish Balay 1129a30f8f8cSSatish Balay PetscFunctionBegin; 1130a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1131d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1132a30f8f8cSSatish Balay #endif 1133a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1134a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 11356bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 11366bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 11386bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay #else 114005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1141a30f8f8cSSatish Balay #endif 114205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 11436bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 11446bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 11456bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 11466bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 11476bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 11486bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 11496bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 11506bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 11515755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 115205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 115305b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 11546bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 11556bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 11566bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1157ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 115805b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1159a30f8f8cSSatish Balay #endif 116059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 116159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1162899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1163bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1164901853e0SKris Buschelman 1165dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1166bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1167bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1168bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1169bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 11706214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 11716214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 11726214f412SHong Zhang #endif 1173a30f8f8cSSatish Balay PetscFunctionReturn(0); 1174a30f8f8cSSatish Balay } 1175a30f8f8cSSatish Balay 11764a2ae208SSatish Balay #undef __FUNCT__ 1177547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 1178547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1179547795f9SHong Zhang { 1180547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1181547795f9SHong Zhang PetscErrorCode ierr; 1182547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 11836de40e93SBarry Smith PetscScalar *from; 11846de40e93SBarry Smith const PetscScalar *x; 1185547795f9SHong Zhang 1186547795f9SHong Zhang PetscFunctionBegin; 1187547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1188e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1189547795f9SHong Zhang 1190547795f9SHong Zhang /* diagonal part */ 1191547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1192547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1193547795f9SHong Zhang 1194547795f9SHong Zhang /* subdiagonal part */ 1195547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1196547795f9SHong Zhang 1197547795f9SHong Zhang /* copy x into the vec slvec0 */ 1198547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 11996de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1200547795f9SHong Zhang 1201547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1202547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 12036de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1204547795f9SHong Zhang 1205547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1206547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1207547795f9SHong Zhang /* supperdiagonal part */ 1208547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1209547795f9SHong Zhang PetscFunctionReturn(0); 1210547795f9SHong Zhang } 1211547795f9SHong Zhang 1212547795f9SHong Zhang #undef __FUNCT__ 1213a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 1214dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1215a9d4b620SHong Zhang { 1216a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1217dfbe8321SBarry Smith PetscErrorCode ierr; 1218d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1219d9ca1df4SBarry Smith PetscScalar *from; 1220d9ca1df4SBarry Smith const PetscScalar *x; 1221a9d4b620SHong Zhang 1222a9d4b620SHong Zhang PetscFunctionBegin; 1223a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1224e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1225a9d4b620SHong Zhang 1226a9d4b620SHong Zhang /* diagonal part */ 1227a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1228fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1229a9d4b620SHong Zhang 1230a9d4b620SHong Zhang /* subdiagonal part */ 1231a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1232fc165ae2SBarry Smith 1233a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12341ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1235d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1236a9d4b620SHong Zhang 1237fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1238fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1239d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1240fc165ae2SBarry Smith 1241fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1242ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1243a9d4b620SHong Zhang /* supperdiagonal part */ 1244a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1245a9d4b620SHong Zhang PetscFunctionReturn(0); 1246a9d4b620SHong Zhang } 1247a9d4b620SHong Zhang 1248a9d4b620SHong Zhang #undef __FUNCT__ 124940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1250dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1251a30f8f8cSSatish Balay { 1252a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1253dfbe8321SBarry Smith PetscErrorCode ierr; 12541302d50aSBarry Smith PetscInt nt; 1255a30f8f8cSSatish Balay 1256a30f8f8cSSatish Balay PetscFunctionBegin; 1257a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1258e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1259e7e72b3dSBarry Smith 1260a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1261e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 126265d70643SHong Zhang 1263ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1264b941877fSHong Zhang /* do diagonal part */ 1265b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1266b941877fSHong Zhang /* do supperdiagonal part */ 1267ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1268b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1269b941877fSHong Zhang /* do subdiagonal part */ 1270b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1271ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1272ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1273a30f8f8cSSatish Balay PetscFunctionReturn(0); 1274a30f8f8cSSatish Balay } 1275a30f8f8cSSatish Balay 12764a2ae208SSatish Balay #undef __FUNCT__ 12774a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1278dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1279a30f8f8cSSatish Balay { 1280de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1281dfbe8321SBarry Smith PetscErrorCode ierr; 1282d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1283d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1284d9ca1df4SBarry Smith const PetscScalar *x; 1285a9d4b620SHong Zhang 1286a9d4b620SHong Zhang PetscFunctionBegin; 1287a9d4b620SHong Zhang /* 1288ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 12890ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1290a9d4b620SHong Zhang */ 1291a9d4b620SHong Zhang /* diagonal part */ 1292a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 12932dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1294a9d4b620SHong Zhang 1295a9d4b620SHong Zhang /* subdiagonal part */ 1296a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1297a9d4b620SHong Zhang 1298a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12991ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1300d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1301a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 13021ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1303a9d4b620SHong Zhang 1304ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1305d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1306ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1307a9d4b620SHong Zhang 1308a9d4b620SHong Zhang /* supperdiagonal part */ 1309a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1310a9d4b620SHong Zhang PetscFunctionReturn(0); 1311a9d4b620SHong Zhang } 1312a9d4b620SHong Zhang 1313a9d4b620SHong Zhang #undef __FUNCT__ 1314a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1315dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1316a9d4b620SHong Zhang { 1317a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1318dfbe8321SBarry Smith PetscErrorCode ierr; 1319a30f8f8cSSatish Balay 1320a30f8f8cSSatish Balay PetscFunctionBegin; 1321ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1322b941877fSHong Zhang /* do diagonal part */ 1323b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1324b941877fSHong Zhang /* do supperdiagonal part */ 1325ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1326de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1327de8b6608SHong Zhang 1328b941877fSHong Zhang /* do subdiagonal part */ 1329a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1330ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1331ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1332a30f8f8cSSatish Balay PetscFunctionReturn(0); 1333a30f8f8cSSatish Balay } 1334a30f8f8cSSatish Balay 1335a30f8f8cSSatish Balay /* 1336a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1337a30f8f8cSSatish Balay diagonal block 1338a30f8f8cSSatish Balay */ 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1341dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1342a30f8f8cSSatish Balay { 1343a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1344dfbe8321SBarry Smith PetscErrorCode ierr; 1345a30f8f8cSSatish Balay 1346a30f8f8cSSatish Balay PetscFunctionBegin; 1347e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1348a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1349a30f8f8cSSatish Balay PetscFunctionReturn(0); 1350a30f8f8cSSatish Balay } 1351a30f8f8cSSatish Balay 13524a2ae208SSatish Balay #undef __FUNCT__ 13534a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1354f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1355a30f8f8cSSatish Balay { 1356a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1357dfbe8321SBarry Smith PetscErrorCode ierr; 1358a30f8f8cSSatish Balay 1359a30f8f8cSSatish Balay PetscFunctionBegin; 1360f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1361f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay PetscFunctionReturn(0); 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay 13654a2ae208SSatish Balay #undef __FUNCT__ 13664a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 13671302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1368a30f8f8cSSatish Balay { 1369d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1370d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1371d0d4cfc2SHong Zhang PetscErrorCode ierr; 1372d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1373d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1374899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1375d0d4cfc2SHong Zhang 1376a30f8f8cSSatish Balay PetscFunctionBegin; 1377e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1378d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1379d0d4cfc2SHong Zhang 1380d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1381d0d4cfc2SHong Zhang /* 1382d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1383d0d4cfc2SHong Zhang */ 1384d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1385d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1386d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1387d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1388d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 138926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1390d0d4cfc2SHong Zhang } 1391dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1392d0d4cfc2SHong Zhang } 1393d0d4cfc2SHong Zhang 1394e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1395d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1396d0d4cfc2SHong Zhang 1397d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1398d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1399d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1400d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1401d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1402d0d4cfc2SHong Zhang nztot = nzA + nzB; 1403d0d4cfc2SHong Zhang 1404d0d4cfc2SHong Zhang cmap = mat->garray; 1405d0d4cfc2SHong Zhang if (v || idx) { 1406d0d4cfc2SHong Zhang if (nztot) { 1407d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1408d0d4cfc2SHong Zhang PetscInt imark = -1; 1409d0d4cfc2SHong Zhang if (v) { 1410d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1411d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1412d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1413d0d4cfc2SHong Zhang else break; 1414d0d4cfc2SHong Zhang } 1415d0d4cfc2SHong Zhang imark = i; 1416d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1417d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1418d0d4cfc2SHong Zhang } 1419d0d4cfc2SHong Zhang if (idx) { 1420d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1421d0d4cfc2SHong Zhang if (imark > -1) { 1422d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1423d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1424d0d4cfc2SHong Zhang } 1425d0d4cfc2SHong Zhang } else { 1426d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 142726fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1428d0d4cfc2SHong Zhang else break; 1429d0d4cfc2SHong Zhang } 1430d0d4cfc2SHong Zhang imark = i; 1431d0d4cfc2SHong Zhang } 1432d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1433d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1434d0d4cfc2SHong Zhang } 1435d0d4cfc2SHong Zhang } else { 1436d0d4cfc2SHong Zhang if (idx) *idx = 0; 1437d0d4cfc2SHong Zhang if (v) *v = 0; 1438d0d4cfc2SHong Zhang } 1439d0d4cfc2SHong Zhang } 1440d0d4cfc2SHong Zhang *nz = nztot; 1441d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1442d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1443a30f8f8cSSatish Balay PetscFunctionReturn(0); 1444a30f8f8cSSatish Balay } 1445a30f8f8cSSatish Balay 14464a2ae208SSatish Balay #undef __FUNCT__ 14474a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 14481302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1449a30f8f8cSSatish Balay { 1450a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1451a30f8f8cSSatish Balay 1452a30f8f8cSSatish Balay PetscFunctionBegin; 1453e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1454a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1455a30f8f8cSSatish Balay PetscFunctionReturn(0); 1456a30f8f8cSSatish Balay } 1457a30f8f8cSSatish Balay 14584a2ae208SSatish Balay #undef __FUNCT__ 1459d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1460d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1461d0d4cfc2SHong Zhang { 1462d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1463d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1464d0d4cfc2SHong Zhang 1465d0d4cfc2SHong Zhang PetscFunctionBegin; 1466d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1467d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1468d0d4cfc2SHong Zhang } 1469d0d4cfc2SHong Zhang #undef __FUNCT__ 1470d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1471d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1472d0d4cfc2SHong Zhang { 1473d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1474d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1475d0d4cfc2SHong Zhang 1476d0d4cfc2SHong Zhang PetscFunctionBegin; 1477d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1478d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1479d0d4cfc2SHong Zhang } 1480d0d4cfc2SHong Zhang 1481d0d4cfc2SHong Zhang #undef __FUNCT__ 148299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 148399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 148499cafbc1SBarry Smith { 148599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 148699cafbc1SBarry Smith PetscErrorCode ierr; 148799cafbc1SBarry Smith 148899cafbc1SBarry Smith PetscFunctionBegin; 148999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 149099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 149199cafbc1SBarry Smith PetscFunctionReturn(0); 149299cafbc1SBarry Smith } 149399cafbc1SBarry Smith 149499cafbc1SBarry Smith #undef __FUNCT__ 149599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 149699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 149799cafbc1SBarry Smith { 149899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 149999cafbc1SBarry Smith PetscErrorCode ierr; 150099cafbc1SBarry Smith 150199cafbc1SBarry Smith PetscFunctionBegin; 150299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 150399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 150499cafbc1SBarry Smith PetscFunctionReturn(0); 150599cafbc1SBarry Smith } 150699cafbc1SBarry Smith 150736032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 150836032a97SHong Zhang Input: isrow - distributed(parallel), 150936032a97SHong Zhang iscol_local - locally owned (seq) 151036032a97SHong Zhang */ 151199cafbc1SBarry Smith #undef __FUNCT__ 151236032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 151336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 15148f46ffcaSHong Zhang { 15158f46ffcaSHong Zhang PetscErrorCode ierr; 15168f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 15178f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 151836032a97SHong Zhang 151936032a97SHong Zhang PetscFunctionBegin; 15208f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 15218f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 15221098a8e8SHong Zhang if (sz1 > sz2) { 15231098a8e8SHong Zhang *flg = PETSC_FALSE; 15241098a8e8SHong Zhang PetscFunctionReturn(0); 15251098a8e8SHong Zhang } 15268f46ffcaSHong Zhang 15278f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 15288f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15298f46ffcaSHong Zhang 15308f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 15318f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 15328f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 15338f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 15348f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 15358f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 15368f46ffcaSHong Zhang 15378f46ffcaSHong Zhang nmatch=0; 15388f46ffcaSHong Zhang k = 0; 15398f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 15408f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 15418f46ffcaSHong Zhang if (a1[i] == a2[j]) { 15428f46ffcaSHong Zhang k = j; nmatch++; 15438f46ffcaSHong Zhang break; 15448f46ffcaSHong Zhang } 15458f46ffcaSHong Zhang } 15468f46ffcaSHong Zhang } 15478f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 15488f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15498f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 15508f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 15511098a8e8SHong Zhang if (nmatch < sz1) { 15521098a8e8SHong Zhang *flg = PETSC_FALSE; 15531098a8e8SHong Zhang } else { 15541098a8e8SHong Zhang *flg = PETSC_TRUE; 15551098a8e8SHong Zhang } 155636032a97SHong Zhang PetscFunctionReturn(0); 15578f46ffcaSHong Zhang } 155836032a97SHong Zhang 155936032a97SHong Zhang #undef __FUNCT__ 156036032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 156136032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 156236032a97SHong Zhang { 156336032a97SHong Zhang PetscErrorCode ierr; 156436032a97SHong Zhang IS iscol_local; 156536032a97SHong Zhang PetscInt csize; 156636032a97SHong Zhang PetscBool isequal; 156736032a97SHong Zhang 156836032a97SHong Zhang PetscFunctionBegin; 156936032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 157036032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 157136032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 157236032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 157336032a97SHong Zhang } else { 157436032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 157536032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 157636032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 15778f46ffcaSHong Zhang } 15788f46ffcaSHong Zhang 15798f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 158036032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 15818f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 15828f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 15838f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 15848f46ffcaSHong Zhang } 15858f46ffcaSHong Zhang PetscFunctionReturn(0); 15868f46ffcaSHong Zhang } 15878f46ffcaSHong Zhang 15888f46ffcaSHong Zhang #undef __FUNCT__ 15894a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1590dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1591a30f8f8cSSatish Balay { 1592a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1593dfbe8321SBarry Smith PetscErrorCode ierr; 1594a30f8f8cSSatish Balay 1595a30f8f8cSSatish Balay PetscFunctionBegin; 1596a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1597a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1598a30f8f8cSSatish Balay PetscFunctionReturn(0); 1599a30f8f8cSSatish Balay } 1600a30f8f8cSSatish Balay 16014a2ae208SSatish Balay #undef __FUNCT__ 16024a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1603dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1604a30f8f8cSSatish Balay { 1605a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1606a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1607dfbe8321SBarry Smith PetscErrorCode ierr; 1608a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1609a30f8f8cSSatish Balay 1610a30f8f8cSSatish Balay PetscFunctionBegin; 1611d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 161226fbe8dcSKarl Rupp 1613a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 161426fbe8dcSKarl Rupp 1615a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1616a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 161726fbe8dcSKarl Rupp 1618a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 161926fbe8dcSKarl Rupp 1620a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1621a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1622a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1623a30f8f8cSSatish Balay info->nz_used = isend[0]; 1624a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1625a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1626a30f8f8cSSatish Balay info->memory = isend[3]; 1627a30f8f8cSSatish Balay info->mallocs = isend[4]; 1628a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1629b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 163026fbe8dcSKarl Rupp 1631a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1632a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1633a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1634a30f8f8cSSatish Balay info->memory = irecv[3]; 1635a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1636a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1637b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 163826fbe8dcSKarl Rupp 1639a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1640a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1641a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1642a30f8f8cSSatish Balay info->memory = irecv[3]; 1643a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1644f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1645a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1646a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1647a30f8f8cSSatish Balay info->factor_mallocs = 0; 1648a30f8f8cSSatish Balay PetscFunctionReturn(0); 1649a30f8f8cSSatish Balay } 1650a30f8f8cSSatish Balay 16514a2ae208SSatish Balay #undef __FUNCT__ 16524a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1653ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1654a30f8f8cSSatish Balay { 1655a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1656d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1657dfbe8321SBarry Smith PetscErrorCode ierr; 1658a30f8f8cSSatish Balay 1659a30f8f8cSSatish Balay PetscFunctionBegin; 1660e98b92d7SKris Buschelman switch (op) { 1661512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1662e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 166328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1664a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1665c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1666e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 166743674050SBarry Smith MatCheckPreallocated(A,1); 16684e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16694e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1670e98b92d7SKris Buschelman break; 1671e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 167243674050SBarry Smith MatCheckPreallocated(A,1); 16734e0d8c25SBarry Smith a->roworiented = flg; 167426fbe8dcSKarl Rupp 16754e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16764e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1677e98b92d7SKris Buschelman break; 16784e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1679290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1680e98b92d7SKris Buschelman break; 1681e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16824e0d8c25SBarry Smith a->donotstash = flg; 1683e98b92d7SKris Buschelman break; 1684e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 16854e0d8c25SBarry Smith a->ht_flag = flg; 1686e98b92d7SKris Buschelman break; 16879a4540c5SBarry Smith case MAT_HERMITIAN: 168843674050SBarry Smith MatCheckPreallocated(A,1); 1689e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1690eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 169126fbe8dcSKarl Rupp 1692547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1693eeffb40dSHong Zhang break; 1694ffa07934SHong Zhang case MAT_SPD: 1695ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1696ffa07934SHong Zhang A->spd = flg; 1697ffa07934SHong Zhang if (flg) { 1698ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1699ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1700ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1701ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1702ffa07934SHong Zhang } 1703ffa07934SHong Zhang break; 170477e54ba9SKris Buschelman case MAT_SYMMETRIC: 170543674050SBarry Smith MatCheckPreallocated(A,1); 1706eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1707eeffb40dSHong Zhang break; 170877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 170943674050SBarry Smith MatCheckPreallocated(A,1); 1710eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1711eeffb40dSHong Zhang break; 17129a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1713e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1714290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 171577e54ba9SKris Buschelman break; 1716d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 17174e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1718d0d4cfc2SHong Zhang break; 1719d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 17204e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1721d0d4cfc2SHong Zhang break; 1722d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 17234e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1724d0d4cfc2SHong Zhang break; 1725e98b92d7SKris Buschelman default: 1726e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1727a30f8f8cSSatish Balay } 1728a30f8f8cSSatish Balay PetscFunctionReturn(0); 1729a30f8f8cSSatish Balay } 1730a30f8f8cSSatish Balay 17314a2ae208SSatish Balay #undef __FUNCT__ 17328115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1733fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1734a30f8f8cSSatish Balay { 1735dfbe8321SBarry Smith PetscErrorCode ierr; 17366e111a19SKarl Rupp 1737a30f8f8cSSatish Balay PetscFunctionBegin; 1738*cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1739999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1740*cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1741*cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1742fc4dec0aSBarry Smith } 17438115998fSBarry Smith PetscFunctionReturn(0); 1744a30f8f8cSSatish Balay } 1745a30f8f8cSSatish Balay 17464a2ae208SSatish Balay #undef __FUNCT__ 17474a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1748dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1749a30f8f8cSSatish Balay { 1750a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1751a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1752dfbe8321SBarry Smith PetscErrorCode ierr; 17535e90f9d9SHong Zhang PetscInt nv,m,n; 1754ace3abfcSBarry Smith PetscBool flg; 1755a30f8f8cSSatish Balay 1756a30f8f8cSSatish Balay PetscFunctionBegin; 1757a30f8f8cSSatish Balay if (ll != rr) { 1758b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1759e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1760a30f8f8cSSatish Balay } 1761b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1762b3bf805bSHong Zhang 17635e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1764e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1765b3bf805bSHong Zhang 17665e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1767e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 17685e90f9d9SHong Zhang 1769ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17705e90f9d9SHong Zhang 17715e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 17720298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 17735e90f9d9SHong Zhang 17745e90f9d9SHong Zhang /* scale the diagonal part */ 1775a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1776a30f8f8cSSatish Balay 17775e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1778ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17790298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1780a30f8f8cSSatish Balay PetscFunctionReturn(0); 1781a30f8f8cSSatish Balay } 1782a30f8f8cSSatish Balay 17834a2ae208SSatish Balay #undef __FUNCT__ 17844a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1785dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1786a30f8f8cSSatish Balay { 1787f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1788dfbe8321SBarry Smith PetscErrorCode ierr; 1789a30f8f8cSSatish Balay 1790a30f8f8cSSatish Balay PetscFunctionBegin; 1791a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1792a30f8f8cSSatish Balay PetscFunctionReturn(0); 1793a30f8f8cSSatish Balay } 1794a30f8f8cSSatish Balay 17956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1796a30f8f8cSSatish Balay 17974a2ae208SSatish Balay #undef __FUNCT__ 17984a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1799ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1800a30f8f8cSSatish Balay { 1801a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1802a30f8f8cSSatish Balay Mat a,b,c,d; 1803ace3abfcSBarry Smith PetscBool flg; 1804dfbe8321SBarry Smith PetscErrorCode ierr; 1805a30f8f8cSSatish Balay 1806a30f8f8cSSatish Balay PetscFunctionBegin; 1807a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1808a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1809a30f8f8cSSatish Balay 1810a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1811abc0a331SBarry Smith if (flg) { 1812a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1813a30f8f8cSSatish Balay } 1814b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1815a30f8f8cSSatish Balay PetscFunctionReturn(0); 1816a30f8f8cSSatish Balay } 1817a30f8f8cSSatish Balay 18184a2ae208SSatish Balay #undef __FUNCT__ 18193c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 18203c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 18213c896bc6SHong Zhang { 18223c896bc6SHong Zhang PetscErrorCode ierr; 18233c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 18243c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 18253c896bc6SHong Zhang 18263c896bc6SHong Zhang PetscFunctionBegin; 18273c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18283c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1829d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 18303c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1831d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 18323c896bc6SHong Zhang } else { 18333c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18343c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18353c896bc6SHong Zhang } 18363c896bc6SHong Zhang PetscFunctionReturn(0); 18373c896bc6SHong Zhang } 18383c896bc6SHong Zhang 18393c896bc6SHong Zhang #undef __FUNCT__ 18404994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 18414994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1842273d9f13SBarry Smith { 1843dfbe8321SBarry Smith PetscErrorCode ierr; 1844273d9f13SBarry Smith 1845273d9f13SBarry Smith PetscFunctionBegin; 1846535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1847273d9f13SBarry Smith PetscFunctionReturn(0); 1848273d9f13SBarry Smith } 1849a5e6ed63SBarry Smith 18504fe895cdSHong Zhang #undef __FUNCT__ 18514fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 18524fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18534fe895cdSHong Zhang { 18544fe895cdSHong Zhang PetscErrorCode ierr; 18554fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 18564fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18574fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 18584fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 18594fe895cdSHong Zhang 18604fe895cdSHong Zhang PetscFunctionBegin; 18614fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18624fe895cdSHong Zhang PetscScalar alpha = a; 18634fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 18644fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1865c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 18668b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 18674fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 18684fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1869c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 18708b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1871a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1872ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1873ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1874ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1875ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 18764fe895cdSHong Zhang } else { 18774de5dceeSHong Zhang Mat B; 18784de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18794de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1880d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 18814de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 18824de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 18834de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 18844de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 18854de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 18864de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 18874de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 18884de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 18894de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 18904de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 18914de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 18924de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 189328be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 18944de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 18954de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1896d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 18974de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 18984fe895cdSHong Zhang } 18994fe895cdSHong Zhang PetscFunctionReturn(0); 19004fe895cdSHong Zhang } 19014fe895cdSHong Zhang 1902a5e6ed63SBarry Smith #undef __FUNCT__ 1903a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 19041302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1905a5e6ed63SBarry Smith { 19066849ba73SBarry Smith PetscErrorCode ierr; 19071302d50aSBarry Smith PetscInt i; 1908afebec48SHong Zhang PetscBool flg; 1909a5e6ed63SBarry Smith 19106849ba73SBarry Smith PetscFunctionBegin; 1911afebec48SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1912a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1913a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1914afebec48SHong Zhang if (!flg) { 1915b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1916a5e6ed63SBarry Smith } 19174dcd73b1SHong Zhang } 1918a5e6ed63SBarry Smith PetscFunctionReturn(0); 1919a5e6ed63SBarry Smith } 1920a5e6ed63SBarry Smith 19217d68702bSBarry Smith #undef __FUNCT__ 19227d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ" 19237d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 19247d68702bSBarry Smith { 19257d68702bSBarry Smith PetscErrorCode ierr; 19267d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 19276f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 19287d68702bSBarry Smith 19297d68702bSBarry Smith PetscFunctionBegin; 19306f33a894SBarry Smith if (!Y->preallocated) { 19317d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 19326f33a894SBarry Smith } else if (!aij->nz) { 1933b83222d8SBarry Smith PetscInt nonew = aij->nonew; 19346f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1935b83222d8SBarry Smith aij->nonew = nonew; 19367d68702bSBarry Smith } 19377d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 19387d68702bSBarry Smith PetscFunctionReturn(0); 19397d68702bSBarry Smith } 19407d68702bSBarry Smith 19413b49f96aSBarry Smith #undef __FUNCT__ 19423b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPISBAIJ" 19433b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 19443b49f96aSBarry Smith { 19453b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 19463b49f96aSBarry Smith PetscErrorCode ierr; 19473b49f96aSBarry Smith 19483b49f96aSBarry Smith PetscFunctionBegin; 19493b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 19503b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 19513b49f96aSBarry Smith if (d) { 19523b49f96aSBarry Smith PetscInt rstart; 19533b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 19543b49f96aSBarry Smith *d += rstart/A->rmap->bs; 19553b49f96aSBarry Smith 19563b49f96aSBarry Smith } 19573b49f96aSBarry Smith PetscFunctionReturn(0); 19583b49f96aSBarry Smith } 19593b49f96aSBarry Smith 1960a5b7ff6bSBarry Smith #undef __FUNCT__ 1961a5b7ff6bSBarry Smith #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1962a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1963a5b7ff6bSBarry Smith { 1964a5b7ff6bSBarry Smith PetscFunctionBegin; 1965a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1966a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1967a5b7ff6bSBarry Smith } 19683b49f96aSBarry Smith 1969a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 19703964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1971a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1972a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1973a9d4b620SHong Zhang MatMult_MPISBAIJ, 197497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1975431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1976431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1977a30f8f8cSSatish Balay 0, 1978a30f8f8cSSatish Balay 0, 1979a30f8f8cSSatish Balay 0, 198097304618SKris Buschelman /* 10*/ 0, 1981a30f8f8cSSatish Balay 0, 1982a30f8f8cSSatish Balay 0, 198341f059aeSBarry Smith MatSOR_MPISBAIJ, 1984a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 198597304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1986a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1987a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1988a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1989a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 199097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1991a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1992a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1993a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1994d519adbfSMatthew Knepley /* 24*/ 0, 1995a30f8f8cSSatish Balay 0, 1996a30f8f8cSSatish Balay 0, 1997a30f8f8cSSatish Balay 0, 1998a30f8f8cSSatish Balay 0, 19994994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 2000b5df2d14SHong Zhang 0, 2001a30f8f8cSSatish Balay 0, 2002a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 2003a30f8f8cSSatish Balay 0, 2004d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 2005a30f8f8cSSatish Balay 0, 2006a30f8f8cSSatish Balay 0, 2007a30f8f8cSSatish Balay 0, 2008a30f8f8cSSatish Balay 0, 2009d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 2010a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 2011d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 2012a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 20133c896bc6SHong Zhang MatCopy_MPISBAIJ, 2014d519adbfSMatthew Knepley /* 44*/ 0, 2015a30f8f8cSSatish Balay MatScale_MPISBAIJ, 20167d68702bSBarry Smith MatShift_MPISBAIJ, 2017a30f8f8cSSatish Balay 0, 2018a30f8f8cSSatish Balay 0, 2019f73d5cc4SBarry Smith /* 49*/ 0, 2020a30f8f8cSSatish Balay 0, 2021a30f8f8cSSatish Balay 0, 2022a30f8f8cSSatish Balay 0, 2023a30f8f8cSSatish Balay 0, 2024d519adbfSMatthew Knepley /* 54*/ 0, 2025a30f8f8cSSatish Balay 0, 2026a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 2027a30f8f8cSSatish Balay 0, 2028a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 20298f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 2030a30f8f8cSSatish Balay 0, 2031a30f8f8cSSatish Balay 0, 2032357abbc8SBarry Smith 0, 203324d5174aSHong Zhang 0, 2034d519adbfSMatthew Knepley /* 64*/ 0, 203524d5174aSHong Zhang 0, 203624d5174aSHong Zhang 0, 203724d5174aSHong Zhang 0, 203824d5174aSHong Zhang 0, 2039d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 204024d5174aSHong Zhang 0, 204197304618SKris Buschelman 0, 204297304618SKris Buschelman 0, 204397304618SKris Buschelman 0, 2044d519adbfSMatthew Knepley /* 74*/ 0, 204597304618SKris Buschelman 0, 204697304618SKris Buschelman 0, 204797304618SKris Buschelman 0, 204897304618SKris Buschelman 0, 2049d519adbfSMatthew Knepley /* 79*/ 0, 205097304618SKris Buschelman 0, 205197304618SKris Buschelman 0, 205297304618SKris Buschelman 0, 20535bba2384SShri Abhyankar MatLoad_MPISBAIJ, 2054d519adbfSMatthew Knepley /* 84*/ 0, 2055865e5f61SKris Buschelman 0, 2056865e5f61SKris Buschelman 0, 2057865e5f61SKris Buschelman 0, 2058865e5f61SKris Buschelman 0, 2059d519adbfSMatthew Knepley /* 89*/ 0, 2060865e5f61SKris Buschelman 0, 2061865e5f61SKris Buschelman 0, 2062865e5f61SKris Buschelman 0, 2063865e5f61SKris Buschelman 0, 2064d519adbfSMatthew Knepley /* 94*/ 0, 2065865e5f61SKris Buschelman 0, 2066865e5f61SKris Buschelman 0, 206799cafbc1SBarry Smith 0, 206899cafbc1SBarry Smith 0, 2069d519adbfSMatthew Knepley /* 99*/ 0, 207099cafbc1SBarry Smith 0, 207199cafbc1SBarry Smith 0, 207299cafbc1SBarry Smith 0, 207399cafbc1SBarry Smith 0, 2074d519adbfSMatthew Knepley /*104*/ 0, 207599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 2076d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 2077d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 207895936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 207995936485SShri Abhyankar /*109*/ 0, 208095936485SShri Abhyankar 0, 208195936485SShri Abhyankar 0, 208295936485SShri Abhyankar 0, 20833b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 208495936485SShri Abhyankar /*114*/ 0, 208595936485SShri Abhyankar 0, 208695936485SShri Abhyankar 0, 208795936485SShri Abhyankar 0, 208895936485SShri Abhyankar 0, 208995936485SShri Abhyankar /*119*/ 0, 209095936485SShri Abhyankar 0, 209195936485SShri Abhyankar 0, 20923964eb88SJed Brown 0, 20933964eb88SJed Brown 0, 20943964eb88SJed Brown /*124*/ 0, 20953964eb88SJed Brown 0, 20963964eb88SJed Brown 0, 20973964eb88SJed Brown 0, 20983964eb88SJed Brown 0, 20993964eb88SJed Brown /*129*/ 0, 21003964eb88SJed Brown 0, 21013964eb88SJed Brown 0, 21023964eb88SJed Brown 0, 21033964eb88SJed Brown 0, 21043964eb88SJed Brown /*134*/ 0, 21053964eb88SJed Brown 0, 21063964eb88SJed Brown 0, 21073964eb88SJed Brown 0, 21083964eb88SJed Brown 0, 210946533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2110f9426fe0SMark Adams 0, 211159f5e6ceSHong Zhang 0, 211259f5e6ceSHong Zhang 0, 211359f5e6ceSHong Zhang 0, 211459f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 211599cafbc1SBarry Smith }; 2116a30f8f8cSSatish Balay 21174a2ae208SSatish Balay #undef __FUNCT__ 2118a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 2119b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2120a23d5eceSKris Buschelman { 2121a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 2122dfbe8321SBarry Smith PetscErrorCode ierr; 2123535b19f3SBarry Smith PetscInt i,mbs,Mbs; 2124a23d5eceSKris Buschelman 2125a23d5eceSKris Buschelman PetscFunctionBegin; 212633d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 212726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 212826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2129e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2130899cda47SBarry Smith 2131a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 2132d0f46423SBarry Smith mbs = B->rmap->n/bs; 2133d0f46423SBarry Smith Mbs = B->rmap->N/bs; 2134c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 2135a23d5eceSKris Buschelman 2136d0f46423SBarry Smith B->rmap->bs = bs; 2137a23d5eceSKris Buschelman b->bs2 = bs*bs; 2138a23d5eceSKris Buschelman b->mbs = mbs; 2139a23d5eceSKris Buschelman b->Mbs = Mbs; 2140de64b629SHong Zhang b->nbs = B->cmap->n/bs; 2141de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 2142a23d5eceSKris Buschelman 2143a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2144d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2145a23d5eceSKris Buschelman } 2146d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2147d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2148a23d5eceSKris Buschelman 2149d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2150d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2151a23d5eceSKris Buschelman 2152cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2153cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2154cb7b82ddSBarry Smith #else 2155cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2156cb7b82ddSBarry Smith #endif 2157cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2158cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2159cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2160cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 2161cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 2162cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 2163cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 2164cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 2165cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 2166cb7b82ddSBarry Smith 2167cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 2168cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2169cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2170cb7b82ddSBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 2171cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2172cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2173cb7b82ddSBarry Smith 2174526dfc15SBarry Smith if (!B->preallocated) { 2175f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2176d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 21779c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 21783bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2179ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2180526dfc15SBarry Smith } 2181a23d5eceSKris Buschelman 2182526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2183526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 218426fbe8dcSKarl Rupp 2185526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2186cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2187cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2188a23d5eceSKris Buschelman PetscFunctionReturn(0); 2189a23d5eceSKris Buschelman } 2190a23d5eceSKris Buschelman 2191dfb205c3SBarry Smith #undef __FUNCT__ 2192dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 2193dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2194dfb205c3SBarry Smith { 2195dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 2196dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2197dfb205c3SBarry Smith const PetscInt *JJ =0; 2198dfb205c3SBarry Smith PetscScalar *values=0; 2199dfb205c3SBarry Smith PetscErrorCode ierr; 2200dfb205c3SBarry Smith 2201dfb205c3SBarry Smith PetscFunctionBegin; 2202ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2203dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2204dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2205dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2206dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2207e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2208dfb205c3SBarry Smith m = B->rmap->n/bs; 2209dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2210dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 2211dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2212dfb205c3SBarry Smith 2213dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2214dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2215dfb205c3SBarry Smith for (i=0; i<m; i++) { 2216dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2217dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2218dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 2219dfb205c3SBarry Smith JJ = jj + ii[i]; 2220dfb205c3SBarry Smith for (j=0; j<nz; j++) { 2221dfb205c3SBarry Smith if (*JJ >= cstart) break; 2222dfb205c3SBarry Smith JJ++; 2223dfb205c3SBarry Smith } 2224dfb205c3SBarry Smith d = 0; 2225dfb205c3SBarry Smith for (; j<nz; j++) { 2226dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2227dfb205c3SBarry Smith d++; 2228dfb205c3SBarry Smith } 2229dfb205c3SBarry Smith d_nnz[i] = d; 2230dfb205c3SBarry Smith o_nnz[i] = nz - d; 2231dfb205c3SBarry Smith } 2232dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2233dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2234dfb205c3SBarry Smith 2235dfb205c3SBarry Smith values = (PetscScalar*)V; 2236dfb205c3SBarry Smith if (!values) { 2237785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2238dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2239dfb205c3SBarry Smith } 2240dfb205c3SBarry Smith for (i=0; i<m; i++) { 2241dfb205c3SBarry Smith PetscInt row = i + rstart; 2242dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2243dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2244dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2245dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2246dfb205c3SBarry Smith } 2247dfb205c3SBarry Smith 2248dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2249dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2250dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 22517827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2252dfb205c3SBarry Smith PetscFunctionReturn(0); 2253dfb205c3SBarry Smith } 2254dfb205c3SBarry Smith 22550bad9183SKris Buschelman /*MC 2256fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2257828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2258828413b8SBarry Smith the matrix is stored. 2259828413b8SBarry Smith 2260828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2261828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 22620bad9183SKris Buschelman 22630bad9183SKris Buschelman Options Database Keys: 22640bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 22650bad9183SKris Buschelman 22660bad9183SKris Buschelman Level: beginner 22670bad9183SKris Buschelman 22680bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 22690bad9183SKris Buschelman M*/ 22700bad9183SKris Buschelman 2271cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2272aa5a9175SDahai Guo 2273a23d5eceSKris Buschelman #undef __FUNCT__ 22744a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 22758cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2276b5df2d14SHong Zhang { 2277b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2278dfbe8321SBarry Smith PetscErrorCode ierr; 227994ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2280b5df2d14SHong Zhang 2281b5df2d14SHong Zhang PetscFunctionBegin; 2282b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2283b0a32e0cSBarry Smith B->data = (void*)b; 2284b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2285b5df2d14SHong Zhang 2286b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2287b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2288b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2289b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 229026fbe8dcSKarl Rupp 2291ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2292ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2293b5df2d14SHong Zhang 2294b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2295854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2296b5df2d14SHong Zhang 2297b5df2d14SHong Zhang /* build cache for off array entries formed */ 2298ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 229926fbe8dcSKarl Rupp 2300b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 23010298fd71SBarry Smith b->colmap = NULL; 23020298fd71SBarry Smith b->garray = NULL; 2303b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2304b5df2d14SHong Zhang 2305b5df2d14SHong Zhang /* stuff used in block assembly */ 2306b5df2d14SHong Zhang b->barray = 0; 2307b5df2d14SHong Zhang 2308b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2309b5df2d14SHong Zhang b->lvec = 0; 2310b5df2d14SHong Zhang b->Mvctx = 0; 231140781036SHong Zhang b->slvec0 = 0; 231240781036SHong Zhang b->slvec0b = 0; 231340781036SHong Zhang b->slvec1 = 0; 231440781036SHong Zhang b->slvec1a = 0; 231540781036SHong Zhang b->slvec1b = 0; 231640781036SHong Zhang b->sMvctx = 0; 2317b5df2d14SHong Zhang 2318b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2319b5df2d14SHong Zhang b->rowindices = 0; 2320b5df2d14SHong Zhang b->rowvalues = 0; 2321b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2322b5df2d14SHong Zhang 2323b5df2d14SHong Zhang /* hash table stuff */ 2324b5df2d14SHong Zhang b->ht = 0; 2325b5df2d14SHong Zhang b->hd = 0; 2326b5df2d14SHong Zhang b->ht_size = 0; 2327b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2328b5df2d14SHong Zhang b->ht_fact = 0; 2329b5df2d14SHong Zhang b->ht_total_ct = 0; 2330b5df2d14SHong Zhang b->ht_insert_ct = 0; 2331b5df2d14SHong Zhang 23327a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 23337a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 23347a868f3eSHong Zhang 233559ffdab8SBarry Smith b->in_loc = 0; 233659ffdab8SBarry Smith b->v_loc = 0; 233759ffdab8SBarry Smith b->n_loc = 0; 233894ae4db5SBarry Smith 2339bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2340bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2341bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2342bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 23436214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 23446214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 23456214f412SHong Zhang #endif 2346aa5a9175SDahai Guo 234723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 234823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 234923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 235023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 235126fbe8dcSKarl Rupp 235217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 235394ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 235494ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 235594ae4db5SBarry Smith if (flg) { 235694ae4db5SBarry Smith PetscReal fact = 1.39; 235794ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 235894ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 235994ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 236094ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 236194ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 236294ae4db5SBarry Smith } 236394ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2364b5df2d14SHong Zhang PetscFunctionReturn(0); 2365b5df2d14SHong Zhang } 2366b5df2d14SHong Zhang 2367209238afSKris Buschelman /*MC 2368002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2369209238afSKris Buschelman 2370209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2371209238afSKris Buschelman and MATMPISBAIJ otherwise. 2372209238afSKris Buschelman 2373209238afSKris Buschelman Options Database Keys: 2374209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2375209238afSKris Buschelman 2376209238afSKris Buschelman Level: beginner 2377209238afSKris Buschelman 2378209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2379209238afSKris Buschelman M*/ 2380209238afSKris Buschelman 23814a2ae208SSatish Balay #undef __FUNCT__ 23824a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 2383b5df2d14SHong Zhang /*@C 2384b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2385b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2386b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2387b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2388b5df2d14SHong Zhang 2389b5df2d14SHong Zhang Collective on Mat 2390b5df2d14SHong Zhang 2391b5df2d14SHong Zhang Input Parameters: 23921c4f3114SJed Brown + B - the matrix 2393bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2394bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2395b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2396b5df2d14SHong Zhang submatrix (same for all local rows) 2397b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 23986d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 23990298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 240095742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2401b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2402b5df2d14SHong Zhang submatrix (same for all local rows). 2403b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2404c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 24050298fd71SBarry Smith (possibly different for each block row) or NULL. 2406b5df2d14SHong Zhang 2407b5df2d14SHong Zhang 2408b5df2d14SHong Zhang Options Database Keys: 2409b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2410b5df2d14SHong Zhang block calculations (much slower) 2411b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2412b5df2d14SHong Zhang 2413b5df2d14SHong Zhang Notes: 2414b5df2d14SHong Zhang 2415b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2416b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2417b5df2d14SHong Zhang 241849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 241949a6f317SBarry Smith 2420b5df2d14SHong Zhang Storage Information: 2421b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2422b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2423b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2424b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2425b5df2d14SHong Zhang 2426b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2427b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 24280298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2429b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2430b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2431b5df2d14SHong Zhang 2432aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2433aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2434aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2435aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2436aa95bbe8SBarry Smith 2437b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2438b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2439b5df2d14SHong Zhang 2440b5df2d14SHong Zhang .vb 2441b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2442a4b1a0f6SJed Brown -------------------------- 2443c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2444c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2445c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2446a4b1a0f6SJed Brown -------------------------- 2447b5df2d14SHong Zhang .ve 2448b5df2d14SHong Zhang 2449b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2450b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 24516d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24526d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2453b5df2d14SHong Zhang 24546d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24556d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2456c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2457c2fc9fa9SBarry Smith 2458b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2459b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2460b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2461b5df2d14SHong Zhang matrices. 2462b5df2d14SHong Zhang 2463b5df2d14SHong Zhang Level: intermediate 2464b5df2d14SHong Zhang 2465b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2466b5df2d14SHong Zhang 2467ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2468b5df2d14SHong Zhang @*/ 24697087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2470b5df2d14SHong Zhang { 24714ac538c5SBarry Smith PetscErrorCode ierr; 2472b5df2d14SHong Zhang 2473b5df2d14SHong Zhang PetscFunctionBegin; 24746ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 24756ba663aaSJed Brown PetscValidType(B,1); 24766ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 24774ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2478b5df2d14SHong Zhang PetscFunctionReturn(0); 2479b5df2d14SHong Zhang } 2480b5df2d14SHong Zhang 24814a2ae208SSatish Balay #undef __FUNCT__ 248269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2483a30f8f8cSSatish Balay /*@C 248469b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2485a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2486a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2487a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2488a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2489a30f8f8cSSatish Balay 2490a30f8f8cSSatish Balay Collective on MPI_Comm 2491a30f8f8cSSatish Balay 2492a30f8f8cSSatish Balay Input Parameters: 2493a30f8f8cSSatish Balay + comm - MPI communicator 2494bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2495bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2496a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2497a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2498a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2499a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2500a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2501a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2502a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2503a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2504a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2505a30f8f8cSSatish Balay submatrix (same for all local rows) 2506a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 25076d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 25080298fd71SBarry Smith (possibly different for each block block row) or NULL. 250995742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 251095742e49SBarry Smith set its value even if it is zero. 2511a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2512a30f8f8cSSatish Balay submatrix (same for all local rows). 2513a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2514a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 25150298fd71SBarry Smith each block row) or NULL. 2516a30f8f8cSSatish Balay 2517a30f8f8cSSatish Balay Output Parameter: 2518a30f8f8cSSatish Balay . A - the matrix 2519a30f8f8cSSatish Balay 2520a30f8f8cSSatish Balay Options Database Keys: 2521a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2522a30f8f8cSSatish Balay block calculations (much slower) 2523a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2524a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2525a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2526a30f8f8cSSatish Balay 2527175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2528ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2529175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2530175b88e8SBarry Smith 2531a30f8f8cSSatish Balay Notes: 2532d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 25336d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2534d1be2dadSMatthew Knepley 2535a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2536a30f8f8cSSatish Balay (possibly both). 2537a30f8f8cSSatish Balay 2538a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2539a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2540a30f8f8cSSatish Balay 254149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 254249a6f317SBarry Smith 2543a30f8f8cSSatish Balay Storage Information: 2544a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2545a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2546a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2547a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2548a30f8f8cSSatish Balay 2549a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2550a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 25510298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2552a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2553a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2554a30f8f8cSSatish Balay 2555a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2556a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2557a30f8f8cSSatish Balay 2558a30f8f8cSSatish Balay .vb 2559a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2560a4b1a0f6SJed Brown -------------------------- 2561c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2562c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2563c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2564a4b1a0f6SJed Brown -------------------------- 2565a30f8f8cSSatish Balay .ve 2566a30f8f8cSSatish Balay 2567a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2568a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 25696d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 25706d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2571a30f8f8cSSatish Balay 25726d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 25736d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2574a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2575a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2576a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2577a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2578a30f8f8cSSatish Balay matrices. 2579a30f8f8cSSatish Balay 2580a30f8f8cSSatish Balay Level: intermediate 2581a30f8f8cSSatish Balay 2582a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2583a30f8f8cSSatish Balay 258469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2585a30f8f8cSSatish Balay @*/ 2586a30f8f8cSSatish Balay 258769b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2588a30f8f8cSSatish Balay { 25896849ba73SBarry Smith PetscErrorCode ierr; 25901302d50aSBarry Smith PetscMPIInt size; 2591a30f8f8cSSatish Balay 2592a30f8f8cSSatish Balay PetscFunctionBegin; 2593f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2594f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2595273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2596273d9f13SBarry Smith if (size > 1) { 2597b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2598b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2599273d9f13SBarry Smith } else { 2600273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2601273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2602273d9f13SBarry Smith } 2603a30f8f8cSSatish Balay PetscFunctionReturn(0); 2604a30f8f8cSSatish Balay } 2605a30f8f8cSSatish Balay 2606a30f8f8cSSatish Balay 26074a2ae208SSatish Balay #undef __FUNCT__ 26084a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 26096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2610a30f8f8cSSatish Balay { 2611a30f8f8cSSatish Balay Mat mat; 2612a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2613dfbe8321SBarry Smith PetscErrorCode ierr; 2614d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2615387bc808SHong Zhang PetscScalar *array; 2616a30f8f8cSSatish Balay 2617a30f8f8cSSatish Balay PetscFunctionBegin; 2618a30f8f8cSSatish Balay *newmat = 0; 261926fbe8dcSKarl Rupp 2620ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2621d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 26227adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 26231d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 26241e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 26251e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2626e1b6402fSHong Zhang 2627d5f3da31SBarry Smith mat->factortype = matin->factortype; 2628273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 262982327fa8SHong Zhang mat->assembled = PETSC_TRUE; 26307fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 26317fff6886SHong Zhang 2632b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2633a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2634a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2635a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2636a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2637a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2638a30f8f8cSSatish Balay 2639899cda47SBarry Smith 2640a30f8f8cSSatish Balay a->size = oldmat->size; 2641a30f8f8cSSatish Balay a->rank = oldmat->rank; 2642a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2643a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2644a30f8f8cSSatish Balay a->rowindices = 0; 2645a30f8f8cSSatish Balay a->rowvalues = 0; 2646a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2647a30f8f8cSSatish Balay a->barray = 0; 2648899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2649899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2650899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2651899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2652a30f8f8cSSatish Balay 2653a30f8f8cSSatish Balay /* hash table stuff */ 2654a30f8f8cSSatish Balay a->ht = 0; 2655a30f8f8cSSatish Balay a->hd = 0; 2656a30f8f8cSSatish Balay a->ht_size = 0; 2657a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2658a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2659a30f8f8cSSatish Balay a->ht_total_ct = 0; 2660a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2661a30f8f8cSSatish Balay 2662899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2663a30f8f8cSSatish Balay if (oldmat->colmap) { 2664a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2665a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2666a30f8f8cSSatish Balay #else 2667854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 26683bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 26691302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2670a30f8f8cSSatish Balay #endif 2671a30f8f8cSSatish Balay } else a->colmap = 0; 2672387bc808SHong Zhang 2673a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2674785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 26753bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 26761302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2677a30f8f8cSSatish Balay } else a->garray = 0; 2678a30f8f8cSSatish Balay 2679ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2680a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 26813bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2682a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 26833bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 268482327fa8SHong Zhang 268582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 26863bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 268782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 26883bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2689387bc808SHong Zhang 2690387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 26911ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2692778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2693778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 26941ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 26951ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2696778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 26971ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 26983bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 26993bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 27003bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 27013bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 27023bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2703387bc808SHong Zhang 2704387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2705387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2706387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 27073bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 270882327fa8SHong Zhang 2709a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 27103bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2711a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 27123bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2713140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2714a30f8f8cSSatish Balay *newmat = mat; 2715a30f8f8cSSatish Balay PetscFunctionReturn(0); 2716a30f8f8cSSatish Balay } 2717a30f8f8cSSatish Balay 27184a2ae208SSatish Balay #undef __FUNCT__ 27195bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2720112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 272195936485SShri Abhyankar { 272295936485SShri Abhyankar PetscErrorCode ierr; 272395936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 272495936485SShri Abhyankar PetscScalar *vals,*buf; 2725ce94432eSBarry Smith MPI_Comm comm; 272695936485SShri Abhyankar MPI_Status status; 2727adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2728adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 272995936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 27303059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 273195936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2732461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 273395936485SShri Abhyankar int fd; 273495936485SShri Abhyankar 273595936485SShri Abhyankar PetscFunctionBegin; 2736c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2737c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2738ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 27390298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 27400298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 274195936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 27423059b6faSBarry Smith if (bs < 0) bs = 1; 274395936485SShri Abhyankar 274495936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 274595936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 274695936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 27475872f025SBarry Smith if (!rank) { 274895936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 274995936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 275002f61395SBarry Smith if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 275195936485SShri Abhyankar } 275295936485SShri Abhyankar 275395936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 275426fbe8dcSKarl Rupp M = header[1]; 275526fbe8dcSKarl Rupp N = header[2]; 275695936485SShri Abhyankar 275795936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2758461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2759461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 276095936485SShri Abhyankar 276195936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 276295936485SShri Abhyankar 276395936485SShri Abhyankar /* 276495936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 276595936485SShri Abhyankar divisible by the blocksize 276695936485SShri Abhyankar */ 276795936485SShri Abhyankar Mbs = M/bs; 276895936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 276995936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 277095936485SShri Abhyankar else Mbs++; 277195936485SShri Abhyankar if (extra_rows &&!rank) { 277295936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 277395936485SShri Abhyankar } 277495936485SShri Abhyankar 277595936485SShri Abhyankar /* determine ownership of all rows */ 277695936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 277795936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 277895936485SShri Abhyankar m = mbs*bs; 277995936485SShri Abhyankar } else { /* User Set */ 278095936485SShri Abhyankar m = newmat->rmap->n; 278195936485SShri Abhyankar mbs = m/bs; 278295936485SShri Abhyankar } 2783dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 27844dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 278595936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 278695936485SShri Abhyankar rowners[0] = 0; 278795936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 278895936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 278995936485SShri Abhyankar rstart = rowners[rank]; 279095936485SShri Abhyankar rend = rowners[rank+1]; 279195936485SShri Abhyankar 279295936485SShri Abhyankar /* distribute row lengths to all processors */ 2793785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 279495936485SShri Abhyankar if (!rank) { 2795854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 279695936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 279795936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2798785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 279995936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 280095936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 280195936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 280295936485SShri Abhyankar } else { 280395936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 280495936485SShri Abhyankar } 280595936485SShri Abhyankar 280695936485SShri Abhyankar if (!rank) { /* procs[0] */ 280795936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2808785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 280995936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 281095936485SShri Abhyankar for (i=0; i<size; i++) { 281195936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 281295936485SShri Abhyankar procsnz[i] += rowlengths[j]; 281395936485SShri Abhyankar } 281495936485SShri Abhyankar } 281595936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 281695936485SShri Abhyankar 281795936485SShri Abhyankar /* determine max buffer needed and allocate it */ 281895936485SShri Abhyankar maxnz = 0; 281995936485SShri Abhyankar for (i=0; i<size; i++) { 282095936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 282195936485SShri Abhyankar } 2822785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 282395936485SShri Abhyankar 282495936485SShri Abhyankar /* read in my part of the matrix column indices */ 282595936485SShri Abhyankar nz = procsnz[0]; 2826785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 282795936485SShri Abhyankar mycols = ibuf; 282895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 282995936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 283026fbe8dcSKarl Rupp if (size == 1) { 283126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 283226fbe8dcSKarl Rupp } 283395936485SShri Abhyankar 283495936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 283595936485SShri Abhyankar for (i=1; i<size-1; i++) { 283695936485SShri Abhyankar nz = procsnz[i]; 283795936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 283895936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 283995936485SShri Abhyankar } 284095936485SShri Abhyankar /* read in the stuff for the last proc */ 284195936485SShri Abhyankar if (size != 1) { 284295936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 284395936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 284495936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 284595936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 284695936485SShri Abhyankar } 284795936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 284895936485SShri Abhyankar } else { /* procs[i], i>0 */ 284995936485SShri Abhyankar /* determine buffer space needed for message */ 285095936485SShri Abhyankar nz = 0; 285126fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2852785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 285395936485SShri Abhyankar mycols = ibuf; 285495936485SShri Abhyankar /* receive message of column indices*/ 285595936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 285695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 285795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 285895936485SShri Abhyankar } 285995936485SShri Abhyankar 286095936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2861dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2862dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 286395936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 286495936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 286595936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 286695936485SShri Abhyankar rowcount = 0; 286795936485SShri Abhyankar nzcount = 0; 286895936485SShri Abhyankar for (i=0; i<mbs; i++) { 286995936485SShri Abhyankar dcount = 0; 287095936485SShri Abhyankar odcount = 0; 287195936485SShri Abhyankar for (j=0; j<bs; j++) { 287295936485SShri Abhyankar kmax = locrowlens[rowcount]; 287395936485SShri Abhyankar for (k=0; k<kmax; k++) { 287495936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 287595936485SShri Abhyankar if (!mask[tmp]) { 287695936485SShri Abhyankar mask[tmp] = 1; 287795936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 287895936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 287995936485SShri Abhyankar } 288095936485SShri Abhyankar } 288195936485SShri Abhyankar rowcount++; 288295936485SShri Abhyankar } 288395936485SShri Abhyankar 288495936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 288595936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 288695936485SShri Abhyankar 288795936485SShri Abhyankar /* zero out the mask elements we set */ 288895936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 288995936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 289095936485SShri Abhyankar } 289195936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 289295936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 28936816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 289495936485SShri Abhyankar 289595936485SShri Abhyankar if (!rank) { 2896785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 289795936485SShri Abhyankar /* read in my part of the matrix numerical values */ 289895936485SShri Abhyankar nz = procsnz[0]; 289995936485SShri Abhyankar vals = buf; 290095936485SShri Abhyankar mycols = ibuf; 290195936485SShri Abhyankar if (size == 1) nz -= extra_rows; 290295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 290326fbe8dcSKarl Rupp if (size == 1) { 290426fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 290526fbe8dcSKarl Rupp } 290695936485SShri Abhyankar 290795936485SShri Abhyankar /* insert into matrix */ 290895936485SShri Abhyankar jj = rstart*bs; 290995936485SShri Abhyankar for (i=0; i<m; i++) { 291095936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 291195936485SShri Abhyankar mycols += locrowlens[i]; 291295936485SShri Abhyankar vals += locrowlens[i]; 291395936485SShri Abhyankar jj++; 291495936485SShri Abhyankar } 291595936485SShri Abhyankar 291695936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 291795936485SShri Abhyankar for (i=1; i<size-1; i++) { 291895936485SShri Abhyankar nz = procsnz[i]; 291995936485SShri Abhyankar vals = buf; 292095936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 292195936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 292295936485SShri Abhyankar } 292395936485SShri Abhyankar /* the last proc */ 292495936485SShri Abhyankar if (size != 1) { 292595936485SShri Abhyankar nz = procsnz[i] - extra_rows; 292695936485SShri Abhyankar vals = buf; 292795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 292895936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 292995936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 293095936485SShri Abhyankar } 293195936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 293295936485SShri Abhyankar 293395936485SShri Abhyankar } else { 293495936485SShri Abhyankar /* receive numeric values */ 2935785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 293695936485SShri Abhyankar 293795936485SShri Abhyankar /* receive message of values*/ 293895936485SShri Abhyankar vals = buf; 293995936485SShri Abhyankar mycols = ibuf; 294095936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 294195936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 294295936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 294395936485SShri Abhyankar 294495936485SShri Abhyankar /* insert into matrix */ 294595936485SShri Abhyankar jj = rstart*bs; 294695936485SShri Abhyankar for (i=0; i<m; i++) { 294795936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 294895936485SShri Abhyankar mycols += locrowlens[i]; 294995936485SShri Abhyankar vals += locrowlens[i]; 295095936485SShri Abhyankar jj++; 295195936485SShri Abhyankar } 295295936485SShri Abhyankar } 295395936485SShri Abhyankar 295495936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 295595936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 295695936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 295795936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 295895936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 295995936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 296095936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296195936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296295936485SShri Abhyankar PetscFunctionReturn(0); 296395936485SShri Abhyankar } 296495936485SShri Abhyankar 296595936485SShri Abhyankar #undef __FUNCT__ 29664a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2967dcf5cc72SBarry Smith /*XXXXX@ 2968a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2969a30f8f8cSSatish Balay 2970a30f8f8cSSatish Balay Input Parameters: 2971a30f8f8cSSatish Balay . mat - the matrix 2972a30f8f8cSSatish Balay . fact - factor 2973a30f8f8cSSatish Balay 2974c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2975a30f8f8cSSatish Balay 2976a30f8f8cSSatish Balay Level: advanced 2977a30f8f8cSSatish Balay 2978a30f8f8cSSatish Balay Notes: 2979a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2980a30f8f8cSSatish Balay 2981a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2982a30f8f8cSSatish Balay 2983a30f8f8cSSatish Balay .seealso: MatSetOption() 2984dcf5cc72SBarry Smith @XXXXX*/ 2985dcf5cc72SBarry Smith 298624d5174aSHong Zhang 29874a2ae208SSatish Balay #undef __FUNCT__ 2988985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2989985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 299024d5174aSHong Zhang { 299124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2992f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2993ca54ac64SHong Zhang PetscReal atmp; 299487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2995dfbe8321SBarry Smith PetscErrorCode ierr; 29961302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 29971302d50aSBarry Smith PetscMPIInt rank,size; 29981302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 299987828ca2SBarry Smith PetscScalar *va; 30008a1c53f2SBarry Smith MatScalar *ba; 3001f4c0e9e4SHong Zhang MPI_Status stat; 300224d5174aSHong Zhang 300324d5174aSHong Zhang PetscFunctionBegin; 3004e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 30050298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 30061ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 3007f4c0e9e4SHong Zhang 3008ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 3009ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 3010f4c0e9e4SHong Zhang 3011d0f46423SBarry Smith bs = A->rmap->bs; 3012f4c0e9e4SHong Zhang mbs = a->mbs; 3013f4c0e9e4SHong Zhang Mbs = a->Mbs; 3014f4c0e9e4SHong Zhang ba = b->a; 3015f4c0e9e4SHong Zhang bi = b->i; 3016f4c0e9e4SHong Zhang bj = b->j; 3017f4c0e9e4SHong Zhang 3018f4c0e9e4SHong Zhang /* find ownerships */ 3019d0f46423SBarry Smith rowners_bs = A->rmap->range; 3020f4c0e9e4SHong Zhang 3021f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 3022785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 3023ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 3024f4c0e9e4SHong Zhang 3025f4c0e9e4SHong Zhang /* row_max for B */ 3026b8475685SHong Zhang if (rank != size-1) { 3027f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 3028f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 3029f4c0e9e4SHong Zhang brow = bs*i; 3030f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 3031f4c0e9e4SHong Zhang bcol = bs*(*bj); 3032f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 3033ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 303404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 3035f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 3036f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 3037ca54ac64SHong Zhang row = brow + krow; /* local row index */ 3038ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 3039f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 3040f4c0e9e4SHong Zhang } 3041f4c0e9e4SHong Zhang } 3042f4c0e9e4SHong Zhang bj++; 3043f4c0e9e4SHong Zhang } 3044f4c0e9e4SHong Zhang } 3045f4c0e9e4SHong Zhang 3046f4c0e9e4SHong Zhang /* send values to its owners */ 3047f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 3048f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 3049ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 3050ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 3051ca54ac64SHong Zhang } 3052f4c0e9e4SHong Zhang } 3053f4c0e9e4SHong Zhang 3054f4c0e9e4SHong Zhang /* receive values */ 3055ca54ac64SHong Zhang if (rank) { 3056f4c0e9e4SHong Zhang rvalues = work; 3057ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 3058f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 3059ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 3060f4c0e9e4SHong Zhang /* process values */ 3061f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 3062ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 3063f4c0e9e4SHong Zhang } 3064f4c0e9e4SHong Zhang } 3065ca54ac64SHong Zhang } 3066f4c0e9e4SHong Zhang 30671ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 3068ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 306924d5174aSHong Zhang PetscFunctionReturn(0); 307024d5174aSHong Zhang } 30712798e883SHong Zhang 30722798e883SHong Zhang #undef __FUNCT__ 307341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 307441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 30752798e883SHong Zhang { 30762798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3077dfbe8321SBarry Smith PetscErrorCode ierr; 3078d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 30793649974fSBarry Smith PetscScalar *x,*ptr,*from; 3080ffe4fb16SHong Zhang Vec bb1; 30813649974fSBarry Smith const PetscScalar *b; 3082ffe4fb16SHong Zhang 3083ffe4fb16SHong Zhang PetscFunctionBegin; 3084e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3085e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 3086ffe4fb16SHong Zhang 3087a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 308841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3089a2b30743SBarry Smith PetscFunctionReturn(0); 3090a2b30743SBarry Smith } 3091a2b30743SBarry Smith 3092ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 3093ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 309441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 3095ffe4fb16SHong Zhang its--; 3096ffe4fb16SHong Zhang } 3097ffe4fb16SHong Zhang 3098ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 3099ffe4fb16SHong Zhang while (its--) { 3100ffe4fb16SHong Zhang 3101ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 3102ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3103ffe4fb16SHong Zhang 3104ffe4fb16SHong Zhang /* copy xx into slvec0a */ 31051ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 31061ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3107ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 31081ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 3109ffe4fb16SHong Zhang 3110efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 3111ffe4fb16SHong Zhang 3112ffe4fb16SHong Zhang /* copy bb into slvec1a */ 31131ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 31143649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 3115ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 31161ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 3117ffe4fb16SHong Zhang 3118ffe4fb16SHong Zhang /* set slvec1b = 0 */ 3119fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3120ffe4fb16SHong Zhang 3121ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 31221ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3123a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 3124ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3125ffe4fb16SHong Zhang 3126ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 3127ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 3128ffe4fb16SHong Zhang 3129ffe4fb16SHong Zhang /* local diagonal sweep */ 313041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 3131ffe4fb16SHong Zhang } 31326bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 3133fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 313441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3135fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 313641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3137fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 3138fa22f6d0SBarry Smith Vec xx1; 3139ace3abfcSBarry Smith PetscBool hasop; 314020f1ed55SBarry Smith const PetscScalar *diag; 3141887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 314220f1ed55SBarry Smith PetscInt i,n; 3143fa22f6d0SBarry Smith 3144fa22f6d0SBarry Smith if (!mat->xx1) { 3145fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 3146fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 3147fa22f6d0SBarry Smith } 3148fa22f6d0SBarry Smith xx1 = mat->xx1; 3149fa22f6d0SBarry Smith bb1 = mat->bb1; 3150fa22f6d0SBarry Smith 315141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 3152fa22f6d0SBarry Smith 3153fa22f6d0SBarry Smith if (!mat->diag) { 3154effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 31552a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 3156fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 3157fa22f6d0SBarry Smith } 3158fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 3159fa22f6d0SBarry Smith 3160fa22f6d0SBarry Smith if (hasop) { 3161fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 3162887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 316320f1ed55SBarry Smith } else { 316420f1ed55SBarry Smith /* 316520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 316620f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 3167887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 316820f1ed55SBarry Smith */ 316920f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 31703649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 31713649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 317220f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 317320f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 3174887ee2caSBarry Smith if (omega == 1.0) { 317526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 317620f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 3177887ee2caSBarry Smith } else { 317826fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 3179887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 3180887ee2caSBarry Smith } 318120f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 31823649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 31833649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 318420f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 318520f1ed55SBarry Smith } 3186fa22f6d0SBarry Smith 3187fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 3188fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3189fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3190fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 3191fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3192fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 3193fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 3194fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3195fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3196fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3197effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 3198fa22f6d0SBarry Smith 3199fa22f6d0SBarry Smith /* local sweep */ 320041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 3201fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 3202f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 3203ffe4fb16SHong Zhang PetscFunctionReturn(0); 3204ffe4fb16SHong Zhang } 3205ffe4fb16SHong Zhang 3206ffe4fb16SHong Zhang #undef __FUNCT__ 320741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 320841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 3209ffe4fb16SHong Zhang { 3210ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3211dfbe8321SBarry Smith PetscErrorCode ierr; 32122798e883SHong Zhang Vec lvec1,bb1; 32132798e883SHong Zhang 32142798e883SHong Zhang PetscFunctionBegin; 3215e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3216e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 32172798e883SHong Zhang 3218c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 32192798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 322041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 32212798e883SHong Zhang its--; 32222798e883SHong Zhang } 32232798e883SHong Zhang 32242798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 32252798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 32262798e883SHong Zhang while (its--) { 3227ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32282798e883SHong Zhang 32292798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 32302798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3231efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 32322798e883SHong Zhang 3233ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32342798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3235ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32362798e883SHong Zhang 32372798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3238efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 32392798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 32402798e883SHong Zhang 3241ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32422798e883SHong Zhang 3243c14dc6b6SHong Zhang /* diagonal sweep */ 324441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 32452798e883SHong Zhang } 32466bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 32476bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 32486bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 32492798e883SHong Zhang PetscFunctionReturn(0); 32502798e883SHong Zhang } 32512798e883SHong Zhang 3252dfb205c3SBarry Smith #undef __FUNCT__ 3253dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 3254dfb205c3SBarry Smith /*@ 3255dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3256dfb205c3SBarry Smith CSR format the local rows. 3257dfb205c3SBarry Smith 3258dfb205c3SBarry Smith Collective on MPI_Comm 3259dfb205c3SBarry Smith 3260dfb205c3SBarry Smith Input Parameters: 3261dfb205c3SBarry Smith + comm - MPI communicator 3262dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3263dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3264dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3265dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3266dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3267dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3268dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3269dfb205c3SBarry Smith . i - row indices 3270dfb205c3SBarry Smith . j - column indices 3271dfb205c3SBarry Smith - a - matrix values 3272dfb205c3SBarry Smith 3273dfb205c3SBarry Smith Output Parameter: 3274dfb205c3SBarry Smith . mat - the matrix 3275dfb205c3SBarry Smith 3276dfb205c3SBarry Smith Level: intermediate 3277dfb205c3SBarry Smith 3278dfb205c3SBarry Smith Notes: 3279dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3280dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3281dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3282dfb205c3SBarry Smith 3283dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3284dfb205c3SBarry Smith 3285dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3286dfb205c3SBarry Smith 3287dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 328869b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3289dfb205c3SBarry Smith @*/ 32907087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3291dfb205c3SBarry Smith { 3292dfb205c3SBarry Smith PetscErrorCode ierr; 3293dfb205c3SBarry Smith 3294dfb205c3SBarry Smith 3295dfb205c3SBarry Smith PetscFunctionBegin; 3296f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3297dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3298dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3299dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3300dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3301dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3302dfb205c3SBarry Smith PetscFunctionReturn(0); 3303dfb205c3SBarry Smith } 3304dfb205c3SBarry Smith 3305dfb205c3SBarry Smith 3306dfb205c3SBarry Smith #undef __FUNCT__ 3307dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 3308dfb205c3SBarry Smith /*@C 3309dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3310dfb205c3SBarry Smith (the default parallel PETSc format). 3311dfb205c3SBarry Smith 3312dfb205c3SBarry Smith Collective on MPI_Comm 3313dfb205c3SBarry Smith 3314dfb205c3SBarry Smith Input Parameters: 33151c4f3114SJed Brown + B - the matrix 3316dfb205c3SBarry Smith . bs - the block size 3317dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3318dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3319dfb205c3SBarry Smith - v - optional values in the matrix 3320dfb205c3SBarry Smith 3321dfb205c3SBarry Smith Level: developer 3322dfb205c3SBarry Smith 3323dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3324dfb205c3SBarry Smith 332569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3326dfb205c3SBarry Smith @*/ 33277087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3328dfb205c3SBarry Smith { 33294ac538c5SBarry Smith PetscErrorCode ierr; 3330dfb205c3SBarry Smith 3331dfb205c3SBarry Smith PetscFunctionBegin; 33324ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3333dfb205c3SBarry Smith PetscFunctionReturn(0); 3334dfb205c3SBarry Smith } 3335dfb205c3SBarry Smith 3336de4b53ebSHong Zhang #undef __FUNCT__ 333710c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 333810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 33394dcd73b1SHong Zhang { 33404dcd73b1SHong Zhang PetscErrorCode ierr; 334110c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 334210c56fdeSHong Zhang PetscInt *indx; 334310c56fdeSHong Zhang PetscScalar *values; 3344dfb205c3SBarry Smith 33454dcd73b1SHong Zhang PetscFunctionBegin; 33464dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 334710c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 334810c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 334910c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 335010c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 33514dcd73b1SHong Zhang 335210c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 335310c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 335410c56fdeSHong Zhang if (n == PETSC_DECIDE) { 335510c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 335610c56fdeSHong Zhang } 335710c56fdeSHong Zhang /* Check sum(n) = Nbs */ 3358b2566f29SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 335910c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 336010c56fdeSHong Zhang 336110c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 336210c56fdeSHong Zhang rstart -= mbs; 33634dcd73b1SHong Zhang 33644dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 336510c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3366e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 336710c56fdeSHong Zhang for (i=0; i<mbs; i++) { 33684dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 33694dcd73b1SHong Zhang nnz = nnz/bs; 33704dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 33714dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 33724dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 33734dcd73b1SHong Zhang } 3374e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 33754dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 33764dcd73b1SHong Zhang 33774dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 337810c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 33794dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 33804dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 33814dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 33824dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 33834dcd73b1SHong Zhang } 33844dcd73b1SHong Zhang 338510c56fdeSHong Zhang /* numeric phase */ 33864dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 338710c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 33884dcd73b1SHong Zhang 3389e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 33904dcd73b1SHong Zhang for (i=0; i<m; i++) { 33914dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 33924dcd73b1SHong Zhang Ii = i + rstart; 339310c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 33944dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 33954dcd73b1SHong Zhang } 3396e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 339710c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 339810c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 33994dcd73b1SHong Zhang PetscFunctionReturn(0); 34004dcd73b1SHong Zhang } 3401