1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10b147fbf3SStefano Zampini 11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 13b147fbf3SStefano Zampini { 14b147fbf3SStefano Zampini Mat preallocator; 15b147fbf3SStefano Zampini PetscInt r,rstart,rend; 16b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 17b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 18b147fbf3SStefano Zampini PetscErrorCode ierr; 19b147fbf3SStefano Zampini 20b147fbf3SStefano Zampini PetscFunctionBegin; 21b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 23b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 24b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 25b147fbf3SStefano Zampini ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr); 26b147fbf3SStefano Zampini if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 27b147fbf3SStefano Zampini } 28b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 29b147fbf3SStefano Zampini ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 30b147fbf3SStefano Zampini ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr); 31b147fbf3SStefano Zampini ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr); 32b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr); 33b147fbf3SStefano Zampini ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr); 34b147fbf3SStefano Zampini ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr); 35b147fbf3SStefano Zampini ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr); 36b147fbf3SStefano Zampini ierr = MatSetUp(preallocator);CHKERRQ(ierr); 37b147fbf3SStefano Zampini ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr); 38b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 39b147fbf3SStefano Zampini PetscInt ncols; 40b147fbf3SStefano Zampini const PetscInt *row; 41b147fbf3SStefano Zampini const PetscScalar *vals; 42b147fbf3SStefano Zampini 43b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 44b147fbf3SStefano Zampini ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 45b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 46b147fbf3SStefano Zampini if (symm && symm[i]) { 47b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 48b147fbf3SStefano Zampini } 49b147fbf3SStefano Zampini ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 50b147fbf3SStefano Zampini } 51b147fbf3SStefano Zampini } 52b147fbf3SStefano Zampini ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 53b147fbf3SStefano Zampini ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 54b147fbf3SStefano Zampini ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr); 55b147fbf3SStefano Zampini ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 56b147fbf3SStefano Zampini PetscFunctionReturn(0); 57b147fbf3SStefano Zampini } 58b147fbf3SStefano Zampini 5928d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 60b147fbf3SStefano Zampini { 61b147fbf3SStefano Zampini Mat B; 62b147fbf3SStefano Zampini PetscErrorCode ierr; 63b147fbf3SStefano Zampini PetscInt r; 64b147fbf3SStefano Zampini 65b147fbf3SStefano Zampini PetscFunctionBegin; 66b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 6728d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 68b147fbf3SStefano Zampini PetscInt bs; 69b147fbf3SStefano Zampini 70b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 71b147fbf3SStefano Zampini ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 72b147fbf3SStefano Zampini ierr = MatSetType(B,newtype);CHKERRQ(ierr); 73b147fbf3SStefano Zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 74b147fbf3SStefano Zampini ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr); 75b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 76b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 7728d58a37SPierre Jolivet ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 7828d58a37SPierre Jolivet if (!isdense) { 79b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 80b147fbf3SStefano Zampini ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr); 81b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 8228d58a37SPierre Jolivet } else { 8328d58a37SPierre Jolivet ierr = MatSetUp(B);CHKERRQ(ierr); 8428d58a37SPierre Jolivet } 8528d58a37SPierre Jolivet } else { 8628d58a37SPierre Jolivet B = *newmat; 8728d58a37SPierre Jolivet ierr = MatZeroEntries(B);CHKERRQ(ierr); 8828d58a37SPierre Jolivet } 89b147fbf3SStefano Zampini 90b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 91b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 92b147fbf3SStefano Zampini PetscInt ncols; 93b147fbf3SStefano Zampini const PetscInt *row; 94b147fbf3SStefano Zampini const PetscScalar *vals; 95b147fbf3SStefano Zampini 96b147fbf3SStefano Zampini ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 97b147fbf3SStefano Zampini ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 98eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 99eb1ec7c1SStefano Zampini if (A->hermitian) { 100eb1ec7c1SStefano Zampini PetscInt i; 101eb1ec7c1SStefano Zampini for (i = 0; i < ncols; i++) { 102eb1ec7c1SStefano Zampini ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr); 103eb1ec7c1SStefano Zampini } 104eb1ec7c1SStefano Zampini } else { 105b147fbf3SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 106eb1ec7c1SStefano Zampini } 107eb1ec7c1SStefano Zampini #else 108eb1ec7c1SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 109eb1ec7c1SStefano Zampini #endif 110b147fbf3SStefano Zampini ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 111b147fbf3SStefano Zampini } 112b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 113b147fbf3SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 114b147fbf3SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 115b147fbf3SStefano Zampini 116b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 117b147fbf3SStefano Zampini ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 118b147fbf3SStefano Zampini } else { 119b147fbf3SStefano Zampini *newmat = B; 120b147fbf3SStefano Zampini } 121b147fbf3SStefano Zampini PetscFunctionReturn(0); 122b147fbf3SStefano Zampini } 123b147fbf3SStefano Zampini 1247087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 125a30f8f8cSSatish Balay { 126f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 127dfbe8321SBarry Smith PetscErrorCode ierr; 128a30f8f8cSSatish Balay 129a30f8f8cSSatish Balay PetscFunctionBegin; 130a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 131a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 132a30f8f8cSSatish Balay PetscFunctionReturn(0); 133a30f8f8cSSatish Balay } 134a30f8f8cSSatish Balay 1357087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 136a30f8f8cSSatish Balay { 137f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 138dfbe8321SBarry Smith PetscErrorCode ierr; 139a30f8f8cSSatish Balay 140a30f8f8cSSatish Balay PetscFunctionBegin; 141a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 142a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 143a30f8f8cSSatish Balay PetscFunctionReturn(0); 144a30f8f8cSSatish Balay } 145a30f8f8cSSatish Balay 146d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 147a30f8f8cSSatish Balay { \ 148a30f8f8cSSatish Balay brow = row/bs; \ 149a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 150a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 151a30f8f8cSSatish Balay bcol = col/bs; \ 152a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 153a30f8f8cSSatish Balay low = 0; high = nrow; \ 154a30f8f8cSSatish Balay while (high-low > 3) { \ 155a30f8f8cSSatish Balay t = (low+high)/2; \ 156a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 157a30f8f8cSSatish Balay else low = t; \ 158a30f8f8cSSatish Balay } \ 159a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 160a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 161a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 162a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 163a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 164a30f8f8cSSatish Balay else *bap = value; \ 165a30f8f8cSSatish Balay goto a_noinsert; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay } \ 168a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 169d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 170fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 171a30f8f8cSSatish Balay N = nrow++ - 1; \ 172a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 173580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 174580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 175580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 176a30f8f8cSSatish Balay rp[_i] = bcol; \ 177a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 178e56f5c9eSBarry Smith A->nonzerostate++;\ 179a30f8f8cSSatish Balay a_noinsert:; \ 180a30f8f8cSSatish Balay ailen[brow] = nrow; \ 181a30f8f8cSSatish Balay } 182e5e170daSBarry Smith 183d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 184a30f8f8cSSatish Balay { \ 185a30f8f8cSSatish Balay brow = row/bs; \ 186a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 187a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 188a30f8f8cSSatish Balay bcol = col/bs; \ 189a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 190a30f8f8cSSatish Balay low = 0; high = nrow; \ 191a30f8f8cSSatish Balay while (high-low > 3) { \ 192a30f8f8cSSatish Balay t = (low+high)/2; \ 193a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 194a30f8f8cSSatish Balay else low = t; \ 195a30f8f8cSSatish Balay } \ 196a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 197a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 198a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 199a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 200a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 201a30f8f8cSSatish Balay else *bap = value; \ 202a30f8f8cSSatish Balay goto b_noinsert; \ 203a30f8f8cSSatish Balay } \ 204a30f8f8cSSatish Balay } \ 205a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 206d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 207fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 208a30f8f8cSSatish Balay N = nrow++ - 1; \ 209a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 210580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 211580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 212580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay rp[_i] = bcol; \ 214a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 215e56f5c9eSBarry Smith B->nonzerostate++;\ 216a30f8f8cSSatish Balay b_noinsert:; \ 217a30f8f8cSSatish Balay bilen[brow] = nrow; \ 218a30f8f8cSSatish Balay } 219a30f8f8cSSatish Balay 220a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 221476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 222a30f8f8cSSatish Balay */ 223dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 224a30f8f8cSSatish Balay { 225a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 226a30f8f8cSSatish Balay MatScalar value; 227ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 228dfbe8321SBarry Smith PetscErrorCode ierr; 2291302d50aSBarry Smith PetscInt i,j,row,col; 230d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 231d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 232d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 233a30f8f8cSSatish Balay 234a30f8f8cSSatish Balay /* Some Variables required in the macro */ 235a30f8f8cSSatish Balay Mat A = baij->A; 236a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2371302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 238a30f8f8cSSatish Balay MatScalar *aa =a->a; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay Mat B = baij->B; 241a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2421302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 243a30f8f8cSSatish Balay MatScalar *ba =b->a; 244a30f8f8cSSatish Balay 2451302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2461302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 247a30f8f8cSSatish Balay MatScalar *ap,*bap; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay /* for stash */ 2500298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2510298fd71SBarry Smith MatScalar *v_loc = NULL; 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay PetscFunctionBegin; 254a30f8f8cSSatish Balay if (!baij->donotstash) { 25559ffdab8SBarry Smith if (n > baij->n_loc) { 25659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 25759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 258785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 259785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 26026fbe8dcSKarl Rupp 26159ffdab8SBarry Smith baij->n_loc = n; 26259ffdab8SBarry Smith } 26359ffdab8SBarry Smith in_loc = baij->in_loc; 26459ffdab8SBarry Smith v_loc = baij->v_loc; 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay 267a30f8f8cSSatish Balay for (i=0; i<m; i++) { 268a30f8f8cSSatish Balay if (im[i] < 0) continue; 269*cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 270a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 271a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 272a30f8f8cSSatish Balay for (j=0; j<n; j++) { 27301b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 27401b2bd88SHong Zhang if (a->ignore_ltriangular) { 27501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27626fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 27701b2bd88SHong Zhang } 278a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 279a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 280a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 281a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 282db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 283db4deed7SKarl Rupp else value = v[i+j*m]; 284d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 285a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 286a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 287*cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 288a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 289a30f8f8cSSatish Balay if (mat->was_assembled) { 290a30f8f8cSSatish Balay if (!baij->colmap) { 291ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 292a30f8f8cSSatish Balay } 293a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 294a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 29571730473SSatish Balay col = col - 1; 296a30f8f8cSSatish Balay #else 29771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 298a30f8f8cSSatish Balay #endif 299a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 300ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 301a30f8f8cSSatish Balay col = in[j]; 302a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 303a30f8f8cSSatish Balay B = baij->B; 304a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 305a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 306a30f8f8cSSatish Balay ba = b->a; 30771730473SSatish Balay } else col += in[j]%bs; 308a30f8f8cSSatish Balay } else col = in[j]; 309db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 310db4deed7SKarl Rupp else value = v[i+j*m]; 311d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 312a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 313a30f8f8cSSatish Balay } 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay } else { /* off processor entry */ 3164cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 317a30f8f8cSSatish Balay if (!baij->donotstash) { 3185080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 319a30f8f8cSSatish Balay n_loc = 0; 320a30f8f8cSSatish Balay for (j=0; j<n; j++) { 321f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 322a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 323a30f8f8cSSatish Balay if (roworiented) { 324a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 325a30f8f8cSSatish Balay } else { 326a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 327a30f8f8cSSatish Balay } 328a30f8f8cSSatish Balay n_loc++; 329a30f8f8cSSatish Balay } 330b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 331a30f8f8cSSatish Balay } 332a30f8f8cSSatish Balay } 333a30f8f8cSSatish Balay } 334a30f8f8cSSatish Balay PetscFunctionReturn(0); 335a30f8f8cSSatish Balay } 336a30f8f8cSSatish Balay 33736bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 33836bd2089SBarry Smith { 33936bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 34036bd2089SBarry Smith PetscErrorCode ierr; 34136bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34236bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 34336bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34436bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34536bd2089SBarry Smith const PetscScalar *value = v; 34636bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 34736bd2089SBarry Smith 34836bd2089SBarry Smith PetscFunctionBegin; 34936bd2089SBarry Smith if (col < row) { 35036bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35136bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35236bd2089SBarry Smith } 35336bd2089SBarry Smith rp = aj + ai[row]; 35436bd2089SBarry Smith ap = aa + bs2*ai[row]; 35536bd2089SBarry Smith rmax = imax[row]; 35636bd2089SBarry Smith nrow = ailen[row]; 35736bd2089SBarry Smith value = v; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith *bap++ += *value++; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith } 39136bd2089SBarry Smith } else { 39236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39336bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39436bd2089SBarry Smith *bap++ = *value++; 39536bd2089SBarry Smith } 39636bd2089SBarry Smith } 39736bd2089SBarry Smith } 39836bd2089SBarry Smith } 39936bd2089SBarry Smith goto noinsert2; 40036bd2089SBarry Smith } 40136bd2089SBarry Smith } 40236bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40336bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 40436bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40536bd2089SBarry Smith N = nrow++ - 1; high++; 40636bd2089SBarry Smith /* shift up all the later entries in this row */ 407580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 408580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 40936bd2089SBarry Smith rp[i] = col; 41036bd2089SBarry Smith bap = ap + bs2*i; 41136bd2089SBarry Smith if (roworiented) { 41236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41436bd2089SBarry Smith bap[jj] = *value++; 41536bd2089SBarry Smith } 41636bd2089SBarry Smith } 41736bd2089SBarry Smith } else { 41836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41936bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42036bd2089SBarry Smith *bap++ = *value++; 42136bd2089SBarry Smith } 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith noinsert2:; 42536bd2089SBarry Smith ailen[row] = nrow; 42636bd2089SBarry Smith PetscFunctionReturn(0); 42736bd2089SBarry Smith } 42836bd2089SBarry Smith 42936bd2089SBarry Smith /* 43036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 43136bd2089SBarry Smith */ 43236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 43336bd2089SBarry Smith { 43436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 43536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 43636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 43736bd2089SBarry Smith PetscErrorCode ierr; 43836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 43936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 44036bd2089SBarry Smith const PetscScalar *value = v; 44136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 44236bd2089SBarry Smith 44336bd2089SBarry Smith PetscFunctionBegin; 44436bd2089SBarry Smith rp = aj + ai[row]; 44536bd2089SBarry Smith ap = aa + bs2*ai[row]; 44636bd2089SBarry Smith rmax = imax[row]; 44736bd2089SBarry Smith nrow = ailen[row]; 44836bd2089SBarry Smith low = 0; 44936bd2089SBarry Smith high = nrow; 45036bd2089SBarry Smith value = v; 45136bd2089SBarry Smith while (high-low > 7) { 45236bd2089SBarry Smith t = (low+high)/2; 45336bd2089SBarry Smith if (rp[t] > col) high = t; 45436bd2089SBarry Smith else low = t; 45536bd2089SBarry Smith } 45636bd2089SBarry Smith for (i=low; i<high; i++) { 45736bd2089SBarry Smith if (rp[i] > col) break; 45836bd2089SBarry Smith if (rp[i] == col) { 45936bd2089SBarry Smith bap = ap + bs2*i; 46036bd2089SBarry Smith if (roworiented) { 46136bd2089SBarry Smith if (is == ADD_VALUES) { 46236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46436bd2089SBarry Smith bap[jj] += *value++; 46536bd2089SBarry Smith } 46636bd2089SBarry Smith } 46736bd2089SBarry Smith } else { 46836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 47036bd2089SBarry Smith bap[jj] = *value++; 47136bd2089SBarry Smith } 47236bd2089SBarry Smith } 47336bd2089SBarry Smith } 47436bd2089SBarry Smith } else { 47536bd2089SBarry Smith if (is == ADD_VALUES) { 47636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 47736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 47836bd2089SBarry Smith bap[jj] += value[jj]; 47936bd2089SBarry Smith } 48036bd2089SBarry Smith bap += bs; 48136bd2089SBarry Smith } 48236bd2089SBarry Smith } else { 48336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48536bd2089SBarry Smith bap[jj] = value[jj]; 48636bd2089SBarry Smith } 48736bd2089SBarry Smith bap += bs; 48836bd2089SBarry Smith } 48936bd2089SBarry Smith } 49036bd2089SBarry Smith } 49136bd2089SBarry Smith goto noinsert2; 49236bd2089SBarry Smith } 49336bd2089SBarry Smith } 49436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 49536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 49636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 49736bd2089SBarry Smith N = nrow++ - 1; high++; 49836bd2089SBarry Smith /* shift up all the later entries in this row */ 499580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 500580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 50136bd2089SBarry Smith rp[i] = col; 50236bd2089SBarry Smith bap = ap + bs2*i; 50336bd2089SBarry Smith if (roworiented) { 50436bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50536bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 50636bd2089SBarry Smith bap[jj] = *value++; 50736bd2089SBarry Smith } 50836bd2089SBarry Smith } 50936bd2089SBarry Smith } else { 51036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 51136bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 51236bd2089SBarry Smith *bap++ = *value++; 51336bd2089SBarry Smith } 51436bd2089SBarry Smith } 51536bd2089SBarry Smith } 51636bd2089SBarry Smith noinsert2:; 51736bd2089SBarry Smith ailen[row] = nrow; 51836bd2089SBarry Smith PetscFunctionReturn(0); 51936bd2089SBarry Smith } 52036bd2089SBarry Smith 52136bd2089SBarry Smith /* 52236bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 52336bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 52436bd2089SBarry Smith */ 525dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 526a30f8f8cSSatish Balay { 5270880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 528f15d580aSBarry Smith const MatScalar *value; 529f15d580aSBarry Smith MatScalar *barray =baij->barray; 530ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 531dfbe8321SBarry Smith PetscErrorCode ierr; 532899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 533476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 534476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5350880e062SHong Zhang 536a30f8f8cSSatish Balay PetscFunctionBegin; 5370880e062SHong Zhang if (!barray) { 538785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 5390880e062SHong Zhang baij->barray = barray; 5400880e062SHong Zhang } 5410880e062SHong Zhang 5420880e062SHong Zhang if (roworiented) { 5430880e062SHong Zhang stepval = (n-1)*bs; 5440880e062SHong Zhang } else { 5450880e062SHong Zhang stepval = (m-1)*bs; 5460880e062SHong Zhang } 5470880e062SHong Zhang for (i=0; i<m; i++) { 5480880e062SHong Zhang if (im[i] < 0) continue; 549*cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 5500880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5510880e062SHong Zhang row = im[i] - rstart; 5520880e062SHong Zhang for (j=0; j<n; j++) { 553f3f98c53SJed Brown if (im[i] > in[j]) { 554f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 555e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 556f3f98c53SJed Brown } 5570880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5580880e062SHong Zhang if ((roworiented) && (n == 1)) { 559f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5600880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 561f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5620880e062SHong Zhang } else { /* Here a copy is required */ 5630880e062SHong Zhang if (roworiented) { 5640880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5650880e062SHong Zhang } else { 5660880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5670880e062SHong Zhang } 5680880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5690880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5700880e062SHong Zhang *barray++ = *value++; 5710880e062SHong Zhang } 5720880e062SHong Zhang } 5730880e062SHong Zhang barray -=bs2; 5740880e062SHong Zhang } 5750880e062SHong Zhang 5760880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5770880e062SHong Zhang col = in[j] - cstart; 57836bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 57926fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 580*cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5810880e062SHong Zhang else { 5820880e062SHong Zhang if (mat->was_assembled) { 5830880e062SHong Zhang if (!baij->colmap) { 584ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5850880e062SHong Zhang } 5860880e062SHong Zhang 5872515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5880880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5891302d50aSBarry Smith { PetscInt data; 5900880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 591e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5920880e062SHong Zhang } 5930880e062SHong Zhang #else 594e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5950880e062SHong Zhang #endif 5960880e062SHong Zhang #endif 5970880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5980880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5990880e062SHong Zhang col = (col - 1)/bs; 6000880e062SHong Zhang #else 6010880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 6020880e062SHong Zhang #endif 6030880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 604ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 6050880e062SHong Zhang col = in[j]; 6060880e062SHong Zhang } 60726fbe8dcSKarl Rupp } else col = in[j]; 60836bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 6090880e062SHong Zhang } 6100880e062SHong Zhang } 6110880e062SHong Zhang } else { 612bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6130880e062SHong Zhang if (!baij->donotstash) { 6140880e062SHong Zhang if (roworiented) { 6150880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6160880e062SHong Zhang } else { 6170880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6180880e062SHong Zhang } 6190880e062SHong Zhang } 6200880e062SHong Zhang } 6210880e062SHong Zhang } 6220880e062SHong Zhang PetscFunctionReturn(0); 623a30f8f8cSSatish Balay } 624a30f8f8cSSatish Balay 6251302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 626a30f8f8cSSatish Balay { 627f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 6286849ba73SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 630d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 631a30f8f8cSSatish Balay 632a30f8f8cSSatish Balay PetscFunctionBegin; 633a30f8f8cSSatish Balay for (i=0; i<m; i++) { 634e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 635e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 636a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 637a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 638a30f8f8cSSatish Balay for (j=0; j<n; j++) { 639e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 640e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 641a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 642a30f8f8cSSatish Balay col = idxn[j] - bscstart; 643c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 644a30f8f8cSSatish Balay } else { 645a30f8f8cSSatish Balay if (!baij->colmap) { 646ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 649a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 650a30f8f8cSSatish Balay data--; 651a30f8f8cSSatish Balay #else 652a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 653a30f8f8cSSatish Balay #endif 654a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 655a30f8f8cSSatish Balay else { 656a30f8f8cSSatish Balay col = data + idxn[j]%bs; 657e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 658a30f8f8cSSatish Balay } 659a30f8f8cSSatish Balay } 660a30f8f8cSSatish Balay } 661f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 666dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 667a30f8f8cSSatish Balay { 668a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 669dfbe8321SBarry Smith PetscErrorCode ierr; 670a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay PetscFunctionBegin; 673a30f8f8cSSatish Balay if (baij->size == 1) { 674a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 675a30f8f8cSSatish Balay } else { 676a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 677785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 678a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 679a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 680a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 681a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 682b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6838f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 684a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6850b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6860b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6870b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6880b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 689899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 690d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6910b8dc8d2SHong Zhang MatScalar *v; 6920b8dc8d2SHong Zhang 693dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 694580bdb30SBarry Smith ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr); 6950b8dc8d2SHong Zhang /* Amat */ 6960b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6970b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6980b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6990b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 7000b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7010b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 7020b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7030b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7040b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7050b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7060b8dc8d2SHong Zhang /* non-diagonal block */ 7070b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7080b8dc8d2SHong Zhang } 7090b8dc8d2SHong Zhang } 7100b8dc8d2SHong Zhang } 71151f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7120b8dc8d2SHong Zhang } 7130b8dc8d2SHong Zhang /* Bmat */ 7140b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7150b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7160b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7170b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7180b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7190b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7200b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7210b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7220b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7230b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7240b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7250b8dc8d2SHong Zhang } 7260b8dc8d2SHong Zhang } 7270b8dc8d2SHong Zhang } 72851f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7290b8dc8d2SHong Zhang } 730b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7310b8dc8d2SHong Zhang *norm = 0.0; 732d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7330b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7340b8dc8d2SHong Zhang } 73574ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 736f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 737a30f8f8cSSatish Balay } 738a30f8f8cSSatish Balay PetscFunctionReturn(0); 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay 741dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 742a30f8f8cSSatish Balay { 743a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 744dfbe8321SBarry Smith PetscErrorCode ierr; 7451302d50aSBarry Smith PetscInt nstash,reallocs; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay PetscFunctionBegin; 74826fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 749a30f8f8cSSatish Balay 750d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7511e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 752a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7531e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7551e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 756a30f8f8cSSatish Balay PetscFunctionReturn(0); 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay 759dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 760a30f8f8cSSatish Balay { 761a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 762a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 7636849ba73SBarry Smith PetscErrorCode ierr; 76413f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 765e44c0bd4SBarry Smith PetscInt *row,*col; 766ace3abfcSBarry Smith PetscBool other_disassembled; 76713f74950SBarry Smith PetscMPIInt n; 768ace3abfcSBarry Smith PetscBool r1,r2,r3; 769a30f8f8cSSatish Balay MatScalar *val; 770a30f8f8cSSatish Balay 77191c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 772a30f8f8cSSatish Balay PetscFunctionBegin; 7734cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 774a30f8f8cSSatish Balay while (1) { 775a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 776a30f8f8cSSatish Balay if (!flg) break; 777a30f8f8cSSatish Balay 778a30f8f8cSSatish Balay for (i=0; i<n;) { 779a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 78026fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 78126fbe8dcSKarl Rupp if (row[j] != rstart) break; 78226fbe8dcSKarl Rupp } 783a30f8f8cSSatish Balay if (j < n) ncols = j-i; 784a30f8f8cSSatish Balay else ncols = n-i; 785a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7864b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 787a30f8f8cSSatish Balay i = j; 788a30f8f8cSSatish Balay } 789a30f8f8cSSatish Balay } 790a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 791a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 792a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 793a30f8f8cSSatish Balay restore the original flags */ 794a30f8f8cSSatish Balay r1 = baij->roworiented; 795a30f8f8cSSatish Balay r2 = a->roworiented; 79691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 79726fbe8dcSKarl Rupp 798a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 799a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 80026fbe8dcSKarl Rupp 80191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 802a30f8f8cSSatish Balay while (1) { 803a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 804a30f8f8cSSatish Balay if (!flg) break; 805a30f8f8cSSatish Balay 806a30f8f8cSSatish Balay for (i=0; i<n;) { 807a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 80826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 80926fbe8dcSKarl Rupp if (row[j] != rstart) break; 81026fbe8dcSKarl Rupp } 811a30f8f8cSSatish Balay if (j < n) ncols = j-i; 812a30f8f8cSSatish Balay else ncols = n-i; 8134b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 814a30f8f8cSSatish Balay i = j; 815a30f8f8cSSatish Balay } 816a30f8f8cSSatish Balay } 817a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 81826fbe8dcSKarl Rupp 819a30f8f8cSSatish Balay baij->roworiented = r1; 820a30f8f8cSSatish Balay a->roworiented = r2; 82126fbe8dcSKarl Rupp 82291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 823a30f8f8cSSatish Balay } 824a30f8f8cSSatish Balay 825a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 826a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 827a30f8f8cSSatish Balay 828a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 829a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 830a30f8f8cSSatish Balay /* 831a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 832a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 833a30f8f8cSSatish Balay */ 834a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 835b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 836a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 837ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 838a30f8f8cSSatish Balay } 839a30f8f8cSSatish Balay } 840a30f8f8cSSatish Balay 841a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 84240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 843a30f8f8cSSatish Balay } 844a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 845a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 846a30f8f8cSSatish Balay 84774ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 84826fbe8dcSKarl Rupp 849a30f8f8cSSatish Balay baij->rowvalues = 0; 8504f9cfa9eSBarry Smith 8514f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8524f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 853e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 854b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 855e56f5c9eSBarry Smith } 856a30f8f8cSSatish Balay PetscFunctionReturn(0); 857a30f8f8cSSatish Balay } 858a30f8f8cSSatish Balay 859dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8609804daf3SBarry Smith #include <petscdraw.h> 8616849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 862a30f8f8cSSatish Balay { 863a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 864dfbe8321SBarry Smith PetscErrorCode ierr; 865d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8667da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 867ace3abfcSBarry Smith PetscBool iascii,isdraw; 868b0a32e0cSBarry Smith PetscViewer sviewer; 869f3ef73ceSBarry Smith PetscViewerFormat format; 870a30f8f8cSSatish Balay 871a30f8f8cSSatish Balay PetscFunctionBegin; 872251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 873251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 87432077d6dSBarry Smith if (iascii) { 875b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 876456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 877a30f8f8cSSatish Balay MatInfo info; 878ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 879a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8801575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 881b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 882a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 883e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 884a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 885e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 886b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8871575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 88807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 889a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 890a30f8f8cSSatish Balay PetscFunctionReturn(0); 891fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 89277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 895c1490034SHong Zhang PetscFunctionReturn(0); 896a30f8f8cSSatish Balay } 897a30f8f8cSSatish Balay } 898a30f8f8cSSatish Balay 899a30f8f8cSSatish Balay if (isdraw) { 900b0a32e0cSBarry Smith PetscDraw draw; 901ace3abfcSBarry Smith PetscBool isnull; 902b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 90345f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 90445f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 905a30f8f8cSSatish Balay } 906a30f8f8cSSatish Balay 9077da1fb6eSBarry Smith { 908a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 909a30f8f8cSSatish Balay Mat A; 91065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 91165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 912d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 913a30f8f8cSSatish Balay MatScalar *a; 9143e219373SBarry Smith const char *matname; 915a30f8f8cSSatish Balay 916f204ca49SKris Buschelman /* Should this be the same type as mat? */ 917ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 918a30f8f8cSSatish Balay if (!rank) { 919f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 920a30f8f8cSSatish Balay } else { 921f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 922a30f8f8cSSatish Balay } 923f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 9240298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9252b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9263bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 927a30f8f8cSSatish Balay 928a30f8f8cSSatish Balay /* copy over the A part */ 92965d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 930a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 931785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 932a30f8f8cSSatish Balay 933a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 934e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 93526fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 936a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 937e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 938a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 939dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 94026fbe8dcSKarl Rupp col++; 94126fbe8dcSKarl Rupp a += bs; 942a30f8f8cSSatish Balay } 943a30f8f8cSSatish Balay } 944a30f8f8cSSatish Balay } 945a30f8f8cSSatish Balay /* copy over the B part */ 94665d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 94765d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 948a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 949e9f7bc9eSHong Zhang 950e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 95126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 952a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 953a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 954a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 955799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 95626fbe8dcSKarl Rupp col++; 95726fbe8dcSKarl Rupp a += bs; 958a30f8f8cSSatish Balay } 959a30f8f8cSSatish Balay } 960a30f8f8cSSatish Balay } 961a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 962a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 963a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 964a30f8f8cSSatish Balay /* 965a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 966b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 967a30f8f8cSSatish Balay */ 9683f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 969ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9703e219373SBarry Smith if (!rank) { 971ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 972383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 973a30f8f8cSSatish Balay } 9743f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9751575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9766bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 977a30f8f8cSSatish Balay } 978a30f8f8cSSatish Balay PetscFunctionReturn(0); 979a30f8f8cSSatish Balay } 980a30f8f8cSSatish Balay 981618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 982618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 983d1654148SHong Zhang 984dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 985a30f8f8cSSatish Balay { 986dfbe8321SBarry Smith PetscErrorCode ierr; 987ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 988a30f8f8cSSatish Balay 989a30f8f8cSSatish Balay PetscFunctionBegin; 990251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 991251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 992251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 993251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 994d1654148SHong Zhang if (iascii || isdraw || issocket) { 995a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 996d1654148SHong Zhang } else if (isbinary) { 997d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay PetscFunctionReturn(0); 1000a30f8f8cSSatish Balay } 1001a30f8f8cSSatish Balay 1002dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1003a30f8f8cSSatish Balay { 1004a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1005dfbe8321SBarry Smith PetscErrorCode ierr; 1006a30f8f8cSSatish Balay 1007a30f8f8cSSatish Balay PetscFunctionBegin; 1008a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1009d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1010a30f8f8cSSatish Balay #endif 1011a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1012a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 10136bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 10146bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1015a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 10166bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1017a30f8f8cSSatish Balay #else 101805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1019a30f8f8cSSatish Balay #endif 102005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 10216bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 10226bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 10236bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 10246bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 10256bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 10266bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 10276bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 10286bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 10295755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 103005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 103105b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 10326bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 10336bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 10346bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1035ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 103605b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1037a30f8f8cSSatish Balay #endif 103859ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 103959ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1040899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1041bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1042901853e0SKris Buschelman 1043dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1044bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1045bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1046bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1047d2c30c80SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 10486214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10496214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 10506214f412SHong Zhang #endif 1051b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr); 1052b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr); 1053a30f8f8cSSatish Balay PetscFunctionReturn(0); 1054a30f8f8cSSatish Balay } 1055a30f8f8cSSatish Balay 1056547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1057547795f9SHong Zhang { 1058547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1059547795f9SHong Zhang PetscErrorCode ierr; 1060eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 10616de40e93SBarry Smith PetscScalar *from; 10626de40e93SBarry Smith const PetscScalar *x; 1063547795f9SHong Zhang 1064547795f9SHong Zhang PetscFunctionBegin; 1065547795f9SHong Zhang /* diagonal part */ 1066547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1067547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1068547795f9SHong Zhang 1069547795f9SHong Zhang /* subdiagonal part */ 1070547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1071547795f9SHong Zhang 1072547795f9SHong Zhang /* copy x into the vec slvec0 */ 1073547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10746de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1075547795f9SHong Zhang 1076580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1077547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10786de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1079547795f9SHong Zhang 1080547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1081547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1082547795f9SHong Zhang /* supperdiagonal part */ 1083547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1084547795f9SHong Zhang PetscFunctionReturn(0); 1085547795f9SHong Zhang } 1086547795f9SHong Zhang 1087dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1088a9d4b620SHong Zhang { 1089a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1090dfbe8321SBarry Smith PetscErrorCode ierr; 1091eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1092d9ca1df4SBarry Smith PetscScalar *from; 1093d9ca1df4SBarry Smith const PetscScalar *x; 1094a9d4b620SHong Zhang 1095a9d4b620SHong Zhang PetscFunctionBegin; 1096a9d4b620SHong Zhang /* diagonal part */ 1097a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1098fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1099a9d4b620SHong Zhang 1100a9d4b620SHong Zhang /* subdiagonal part */ 1101a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1102fc165ae2SBarry Smith 1103a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11041ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1105d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1106a9d4b620SHong Zhang 1107580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1108fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1109d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1110fc165ae2SBarry Smith 1111fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1112ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1113a9d4b620SHong Zhang /* supperdiagonal part */ 1114a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1115a9d4b620SHong Zhang PetscFunctionReturn(0); 1116a9d4b620SHong Zhang } 1117a9d4b620SHong Zhang 1118dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1119a30f8f8cSSatish Balay { 1120a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1121dfbe8321SBarry Smith PetscErrorCode ierr; 11221302d50aSBarry Smith PetscInt nt; 1123a30f8f8cSSatish Balay 1124a30f8f8cSSatish Balay PetscFunctionBegin; 1125a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1126e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1127e7e72b3dSBarry Smith 1128a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1129e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 113065d70643SHong Zhang 1131ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1132b941877fSHong Zhang /* do diagonal part */ 1133b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1134b941877fSHong Zhang /* do supperdiagonal part */ 1135ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1136b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1137b941877fSHong Zhang /* do subdiagonal part */ 1138b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1139ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1140ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1141a30f8f8cSSatish Balay PetscFunctionReturn(0); 1142a30f8f8cSSatish Balay } 1143a30f8f8cSSatish Balay 1144eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz) 1145eb1ec7c1SStefano Zampini { 1146eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1147eb1ec7c1SStefano Zampini PetscErrorCode ierr; 1148eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1149eb1ec7c1SStefano Zampini PetscScalar *from,zero=0.0; 1150eb1ec7c1SStefano Zampini const PetscScalar *x; 1151eb1ec7c1SStefano Zampini 1152eb1ec7c1SStefano Zampini PetscFunctionBegin; 1153eb1ec7c1SStefano Zampini /* diagonal part */ 1154eb1ec7c1SStefano Zampini ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1155eb1ec7c1SStefano Zampini ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1156eb1ec7c1SStefano Zampini 1157eb1ec7c1SStefano Zampini /* subdiagonal part */ 1158eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1159eb1ec7c1SStefano Zampini 1160eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 1161eb1ec7c1SStefano Zampini ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1162eb1ec7c1SStefano Zampini ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1163eb1ec7c1SStefano Zampini ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1164eb1ec7c1SStefano Zampini ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1165eb1ec7c1SStefano Zampini 1166eb1ec7c1SStefano Zampini ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1167eb1ec7c1SStefano Zampini ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1168eb1ec7c1SStefano Zampini ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1169eb1ec7c1SStefano Zampini 1170eb1ec7c1SStefano Zampini /* supperdiagonal part */ 1171eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1172eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1173eb1ec7c1SStefano Zampini } 1174eb1ec7c1SStefano Zampini 1175dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1176a30f8f8cSSatish Balay { 1177de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1178dfbe8321SBarry Smith PetscErrorCode ierr; 1179d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1180d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1181d9ca1df4SBarry Smith const PetscScalar *x; 1182a9d4b620SHong Zhang 1183a9d4b620SHong Zhang PetscFunctionBegin; 1184a9d4b620SHong Zhang /* diagonal part */ 1185a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11862dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1187a9d4b620SHong Zhang 1188a9d4b620SHong Zhang /* subdiagonal part */ 1189a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1190a9d4b620SHong Zhang 1191a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11921ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1193d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1194580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 11951ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1196a9d4b620SHong Zhang 1197ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1198d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1199ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1200a9d4b620SHong Zhang 1201a9d4b620SHong Zhang /* supperdiagonal part */ 1202a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1203a9d4b620SHong Zhang PetscFunctionReturn(0); 1204a9d4b620SHong Zhang } 1205a9d4b620SHong Zhang 1206dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1207a9d4b620SHong Zhang { 1208a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1209dfbe8321SBarry Smith PetscErrorCode ierr; 1210a30f8f8cSSatish Balay 1211a30f8f8cSSatish Balay PetscFunctionBegin; 1212ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1213b941877fSHong Zhang /* do diagonal part */ 1214b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1215b941877fSHong Zhang /* do supperdiagonal part */ 1216ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1217de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1218de8b6608SHong Zhang 1219b941877fSHong Zhang /* do subdiagonal part */ 1220a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1221ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1222ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1223a30f8f8cSSatish Balay PetscFunctionReturn(0); 1224a30f8f8cSSatish Balay } 1225a30f8f8cSSatish Balay 1226a30f8f8cSSatish Balay /* 1227a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1228a30f8f8cSSatish Balay diagonal block 1229a30f8f8cSSatish Balay */ 1230dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1231a30f8f8cSSatish Balay { 1232a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1233dfbe8321SBarry Smith PetscErrorCode ierr; 1234a30f8f8cSSatish Balay 1235a30f8f8cSSatish Balay PetscFunctionBegin; 1236e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1237a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1238a30f8f8cSSatish Balay PetscFunctionReturn(0); 1239a30f8f8cSSatish Balay } 1240a30f8f8cSSatish Balay 1241f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1242a30f8f8cSSatish Balay { 1243a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1244dfbe8321SBarry Smith PetscErrorCode ierr; 1245a30f8f8cSSatish Balay 1246a30f8f8cSSatish Balay PetscFunctionBegin; 1247f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1248f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1249a30f8f8cSSatish Balay PetscFunctionReturn(0); 1250a30f8f8cSSatish Balay } 1251a30f8f8cSSatish Balay 12521302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1253a30f8f8cSSatish Balay { 1254d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1255d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1256d0d4cfc2SHong Zhang PetscErrorCode ierr; 1257d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1258d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1259899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1260d0d4cfc2SHong Zhang 1261a30f8f8cSSatish Balay PetscFunctionBegin; 1262e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1263d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1264d0d4cfc2SHong Zhang 1265d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1266d0d4cfc2SHong Zhang /* 1267d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1268d0d4cfc2SHong Zhang */ 1269d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1270d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1271d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1272d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1273d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 127426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1275d0d4cfc2SHong Zhang } 1276dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1277d0d4cfc2SHong Zhang } 1278d0d4cfc2SHong Zhang 1279e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1280d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1281d0d4cfc2SHong Zhang 1282d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1283d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1284d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1285d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1286d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1287d0d4cfc2SHong Zhang nztot = nzA + nzB; 1288d0d4cfc2SHong Zhang 1289d0d4cfc2SHong Zhang cmap = mat->garray; 1290d0d4cfc2SHong Zhang if (v || idx) { 1291d0d4cfc2SHong Zhang if (nztot) { 1292d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1293d0d4cfc2SHong Zhang PetscInt imark = -1; 1294d0d4cfc2SHong Zhang if (v) { 1295d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1296d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1297d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1298d0d4cfc2SHong Zhang else break; 1299d0d4cfc2SHong Zhang } 1300d0d4cfc2SHong Zhang imark = i; 1301d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1302d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1303d0d4cfc2SHong Zhang } 1304d0d4cfc2SHong Zhang if (idx) { 1305d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1306d0d4cfc2SHong Zhang if (imark > -1) { 1307d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1308d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1309d0d4cfc2SHong Zhang } 1310d0d4cfc2SHong Zhang } else { 1311d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 131226fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1313d0d4cfc2SHong Zhang else break; 1314d0d4cfc2SHong Zhang } 1315d0d4cfc2SHong Zhang imark = i; 1316d0d4cfc2SHong Zhang } 1317d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1318d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1319d0d4cfc2SHong Zhang } 1320d0d4cfc2SHong Zhang } else { 1321d0d4cfc2SHong Zhang if (idx) *idx = 0; 1322d0d4cfc2SHong Zhang if (v) *v = 0; 1323d0d4cfc2SHong Zhang } 1324d0d4cfc2SHong Zhang } 1325d0d4cfc2SHong Zhang *nz = nztot; 1326d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1327d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1328a30f8f8cSSatish Balay PetscFunctionReturn(0); 1329a30f8f8cSSatish Balay } 1330a30f8f8cSSatish Balay 13311302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1332a30f8f8cSSatish Balay { 1333a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1334a30f8f8cSSatish Balay 1335a30f8f8cSSatish Balay PetscFunctionBegin; 1336e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1337a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1338a30f8f8cSSatish Balay PetscFunctionReturn(0); 1339a30f8f8cSSatish Balay } 1340a30f8f8cSSatish Balay 1341d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1342d0d4cfc2SHong Zhang { 1343d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1344d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1345d0d4cfc2SHong Zhang 1346d0d4cfc2SHong Zhang PetscFunctionBegin; 1347d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1348d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1349d0d4cfc2SHong Zhang } 1350d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1351d0d4cfc2SHong Zhang { 1352d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1353d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1354d0d4cfc2SHong Zhang 1355d0d4cfc2SHong Zhang PetscFunctionBegin; 1356d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1357d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1358d0d4cfc2SHong Zhang } 1359d0d4cfc2SHong Zhang 136099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 136199cafbc1SBarry Smith { 136299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 136399cafbc1SBarry Smith PetscErrorCode ierr; 136499cafbc1SBarry Smith 136599cafbc1SBarry Smith PetscFunctionBegin; 136699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 136799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 136899cafbc1SBarry Smith PetscFunctionReturn(0); 136999cafbc1SBarry Smith } 137099cafbc1SBarry Smith 137199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 137299cafbc1SBarry Smith { 137399cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 137499cafbc1SBarry Smith PetscErrorCode ierr; 137599cafbc1SBarry Smith 137699cafbc1SBarry Smith PetscFunctionBegin; 137799cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 137899cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 137999cafbc1SBarry Smith PetscFunctionReturn(0); 138099cafbc1SBarry Smith } 138199cafbc1SBarry Smith 13827dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 138336032a97SHong Zhang Input: isrow - distributed(parallel), 138436032a97SHong Zhang iscol_local - locally owned (seq) 138536032a97SHong Zhang */ 138636032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13878f46ffcaSHong Zhang { 13888f46ffcaSHong Zhang PetscErrorCode ierr; 13898f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13908f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 139136032a97SHong Zhang 139236032a97SHong Zhang PetscFunctionBegin; 13938f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13948f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13951098a8e8SHong Zhang if (sz1 > sz2) { 13961098a8e8SHong Zhang *flg = PETSC_FALSE; 13971098a8e8SHong Zhang PetscFunctionReturn(0); 13981098a8e8SHong Zhang } 13998f46ffcaSHong Zhang 14008f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 14018f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 14028f46ffcaSHong Zhang 14038f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 14048f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1405580bdb30SBarry Smith ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr); 1406580bdb30SBarry Smith ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr); 14078f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 14088f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 14098f46ffcaSHong Zhang 14108f46ffcaSHong Zhang nmatch=0; 14118f46ffcaSHong Zhang k = 0; 14128f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 14138f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 14148f46ffcaSHong Zhang if (a1[i] == a2[j]) { 14158f46ffcaSHong Zhang k = j; nmatch++; 14168f46ffcaSHong Zhang break; 14178f46ffcaSHong Zhang } 14188f46ffcaSHong Zhang } 14198f46ffcaSHong Zhang } 14208f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 14218f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 14228f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 14238f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 14241098a8e8SHong Zhang if (nmatch < sz1) { 14251098a8e8SHong Zhang *flg = PETSC_FALSE; 14261098a8e8SHong Zhang } else { 14271098a8e8SHong Zhang *flg = PETSC_TRUE; 14281098a8e8SHong Zhang } 142936032a97SHong Zhang PetscFunctionReturn(0); 14308f46ffcaSHong Zhang } 143136032a97SHong Zhang 14327dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 143336032a97SHong Zhang { 143436032a97SHong Zhang PetscErrorCode ierr; 143536032a97SHong Zhang IS iscol_local; 143636032a97SHong Zhang PetscInt csize; 143736032a97SHong Zhang PetscBool isequal; 143836032a97SHong Zhang 143936032a97SHong Zhang PetscFunctionBegin; 144036032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 144136032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 144236032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 144336032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 144436032a97SHong Zhang } else { 144536032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 144636032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 144736032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 14488f46ffcaSHong Zhang } 14498f46ffcaSHong Zhang 14507dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14517dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 14528f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14538f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 14548f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 14558f46ffcaSHong Zhang } 14568f46ffcaSHong Zhang PetscFunctionReturn(0); 14578f46ffcaSHong Zhang } 14588f46ffcaSHong Zhang 1459dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1460a30f8f8cSSatish Balay { 1461a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1462dfbe8321SBarry Smith PetscErrorCode ierr; 1463a30f8f8cSSatish Balay 1464a30f8f8cSSatish Balay PetscFunctionBegin; 1465a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1466a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1467a30f8f8cSSatish Balay PetscFunctionReturn(0); 1468a30f8f8cSSatish Balay } 1469a30f8f8cSSatish Balay 1470dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1471a30f8f8cSSatish Balay { 1472a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1473a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1474dfbe8321SBarry Smith PetscErrorCode ierr; 14753966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 1476a30f8f8cSSatish Balay 1477a30f8f8cSSatish Balay PetscFunctionBegin; 1478d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 147926fbe8dcSKarl Rupp 1480a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 148126fbe8dcSKarl Rupp 1482a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1483a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 148426fbe8dcSKarl Rupp 1485a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 148626fbe8dcSKarl Rupp 1487a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1488a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1489a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1490a30f8f8cSSatish Balay info->nz_used = isend[0]; 1491a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1492a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1493a30f8f8cSSatish Balay info->memory = isend[3]; 1494a30f8f8cSSatish Balay info->mallocs = isend[4]; 1495a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14963966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 149726fbe8dcSKarl Rupp 1498a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1499a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1500a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1501a30f8f8cSSatish Balay info->memory = irecv[3]; 1502a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1503a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 15043966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 150526fbe8dcSKarl Rupp 1506a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1507a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1508a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1509a30f8f8cSSatish Balay info->memory = irecv[3]; 1510a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1511f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1512a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1513a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1514a30f8f8cSSatish Balay info->factor_mallocs = 0; 1515a30f8f8cSSatish Balay PetscFunctionReturn(0); 1516a30f8f8cSSatish Balay } 1517a30f8f8cSSatish Balay 1518ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1519a30f8f8cSSatish Balay { 1520a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1521d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1522dfbe8321SBarry Smith PetscErrorCode ierr; 1523a30f8f8cSSatish Balay 1524a30f8f8cSSatish Balay PetscFunctionBegin; 1525e98b92d7SKris Buschelman switch (op) { 1526512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1527e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 152828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1529a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1530c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1531e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 153243674050SBarry Smith MatCheckPreallocated(A,1); 15334e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15344e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1535e98b92d7SKris Buschelman break; 1536e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 153743674050SBarry Smith MatCheckPreallocated(A,1); 15384e0d8c25SBarry Smith a->roworiented = flg; 153926fbe8dcSKarl Rupp 15404e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15414e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1542e98b92d7SKris Buschelman break; 15434e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1544071fcb05SBarry Smith case MAT_SORTED_FULL: 1545290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1546e98b92d7SKris Buschelman break; 1547e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15484e0d8c25SBarry Smith a->donotstash = flg; 1549e98b92d7SKris Buschelman break; 1550e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 15514e0d8c25SBarry Smith a->ht_flag = flg; 1552e98b92d7SKris Buschelman break; 15539a4540c5SBarry Smith case MAT_HERMITIAN: 155443674050SBarry Smith MatCheckPreallocated(A,1); 1555eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15560f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1557eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1558547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1559eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1560eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1561eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1562eb1ec7c1SStefano Zampini A->symmetric = PETSC_FALSE; 1563eb1ec7c1SStefano Zampini } 15640f2140c7SStefano Zampini #endif 1565eeffb40dSHong Zhang break; 1566ffa07934SHong Zhang case MAT_SPD: 156777e54ba9SKris Buschelman case MAT_SYMMETRIC: 156843674050SBarry Smith MatCheckPreallocated(A,1); 1569eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1570eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1571eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1572eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1573eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1574eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1575eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1576eb1ec7c1SStefano Zampini } 1577eb1ec7c1SStefano Zampini #endif 1578eeffb40dSHong Zhang break; 157977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 158043674050SBarry Smith MatCheckPreallocated(A,1); 1581eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1582eeffb40dSHong Zhang break; 15839a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1584e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1585290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 158677e54ba9SKris Buschelman break; 1587d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15884e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1589d0d4cfc2SHong Zhang break; 1590d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15914e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1592d0d4cfc2SHong Zhang break; 1593d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15944e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1595d0d4cfc2SHong Zhang break; 1596e98b92d7SKris Buschelman default: 1597e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1598a30f8f8cSSatish Balay } 1599a30f8f8cSSatish Balay PetscFunctionReturn(0); 1600a30f8f8cSSatish Balay } 1601a30f8f8cSSatish Balay 1602fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1603a30f8f8cSSatish Balay { 1604dfbe8321SBarry Smith PetscErrorCode ierr; 16056e111a19SKarl Rupp 1606a30f8f8cSSatish Balay PetscFunctionBegin; 1607cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1608999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1609cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1610cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1611fc4dec0aSBarry Smith } 16128115998fSBarry Smith PetscFunctionReturn(0); 1613a30f8f8cSSatish Balay } 1614a30f8f8cSSatish Balay 1615dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1616a30f8f8cSSatish Balay { 1617a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1618a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1619dfbe8321SBarry Smith PetscErrorCode ierr; 16205e90f9d9SHong Zhang PetscInt nv,m,n; 1621ace3abfcSBarry Smith PetscBool flg; 1622a30f8f8cSSatish Balay 1623a30f8f8cSSatish Balay PetscFunctionBegin; 1624a30f8f8cSSatish Balay if (ll != rr) { 1625b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1626e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1627a30f8f8cSSatish Balay } 1628b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1629b3bf805bSHong Zhang 16305e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1631e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1632b3bf805bSHong Zhang 16335e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1634e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 16355e90f9d9SHong Zhang 1636ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16375e90f9d9SHong Zhang 16385e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 16390298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16405e90f9d9SHong Zhang 16415e90f9d9SHong Zhang /* scale the diagonal part */ 1642a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1643a30f8f8cSSatish Balay 16445e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1645ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16460298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1647a30f8f8cSSatish Balay PetscFunctionReturn(0); 1648a30f8f8cSSatish Balay } 1649a30f8f8cSSatish Balay 1650dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1651a30f8f8cSSatish Balay { 1652f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1653dfbe8321SBarry Smith PetscErrorCode ierr; 1654a30f8f8cSSatish Balay 1655a30f8f8cSSatish Balay PetscFunctionBegin; 1656a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1657a30f8f8cSSatish Balay PetscFunctionReturn(0); 1658a30f8f8cSSatish Balay } 1659a30f8f8cSSatish Balay 16606849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1661a30f8f8cSSatish Balay 1662ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1663a30f8f8cSSatish Balay { 1664a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1665a30f8f8cSSatish Balay Mat a,b,c,d; 1666ace3abfcSBarry Smith PetscBool flg; 1667dfbe8321SBarry Smith PetscErrorCode ierr; 1668a30f8f8cSSatish Balay 1669a30f8f8cSSatish Balay PetscFunctionBegin; 1670a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1671a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1672a30f8f8cSSatish Balay 1673a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1674abc0a331SBarry Smith if (flg) { 1675a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1676a30f8f8cSSatish Balay } 1677b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1678a30f8f8cSSatish Balay PetscFunctionReturn(0); 1679a30f8f8cSSatish Balay } 1680a30f8f8cSSatish Balay 16813c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16823c896bc6SHong Zhang { 16833c896bc6SHong Zhang PetscErrorCode ierr; 16844c7a3774SStefano Zampini PetscBool isbaij; 16853c896bc6SHong Zhang 16863c896bc6SHong Zhang PetscFunctionBegin; 16874c7a3774SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr); 16884c7a3774SStefano Zampini if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 16893c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16903c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1691d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16923c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1693d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16943c896bc6SHong Zhang } else { 16954c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16964c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16974c7a3774SStefano Zampini 16983c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16993c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17003c896bc6SHong Zhang } 1701cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 17023c896bc6SHong Zhang PetscFunctionReturn(0); 17033c896bc6SHong Zhang } 17043c896bc6SHong Zhang 17054994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1706273d9f13SBarry Smith { 1707dfbe8321SBarry Smith PetscErrorCode ierr; 1708273d9f13SBarry Smith 1709273d9f13SBarry Smith PetscFunctionBegin; 1710535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1711273d9f13SBarry Smith PetscFunctionReturn(0); 1712273d9f13SBarry Smith } 1713a5e6ed63SBarry Smith 17144fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17154fe895cdSHong Zhang { 17164fe895cdSHong Zhang PetscErrorCode ierr; 17174fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 17184fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17194fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 17204fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 17214fe895cdSHong Zhang 17224fe895cdSHong Zhang PetscFunctionBegin; 17234fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17244fe895cdSHong Zhang PetscScalar alpha = a; 17254fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 17264fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1727c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 17288b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 17294fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 17304fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1731c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 17328b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1733a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1734ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1735ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1736ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1737ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 17384fe895cdSHong Zhang } else { 17394de5dceeSHong Zhang Mat B; 17404de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 17414de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1742d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 17434de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 17444de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 17454de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 17464de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 17474de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 17484de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 17494de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 17504de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 17514de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 17524de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 17534de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 17544de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 175528be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 17564de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 17574de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1758d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17594de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17604fe895cdSHong Zhang } 17614fe895cdSHong Zhang PetscFunctionReturn(0); 17624fe895cdSHong Zhang } 17634fe895cdSHong Zhang 17647dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1765a5e6ed63SBarry Smith { 17666849ba73SBarry Smith PetscErrorCode ierr; 17671302d50aSBarry Smith PetscInt i; 1768afebec48SHong Zhang PetscBool flg; 1769a5e6ed63SBarry Smith 17706849ba73SBarry Smith PetscFunctionBegin; 17717dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1772a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1773a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1774afebec48SHong Zhang if (!flg) { 1775b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1776a5e6ed63SBarry Smith } 17774dcd73b1SHong Zhang } 1778a5e6ed63SBarry Smith PetscFunctionReturn(0); 1779a5e6ed63SBarry Smith } 1780a5e6ed63SBarry Smith 17817d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17827d68702bSBarry Smith { 17837d68702bSBarry Smith PetscErrorCode ierr; 17847d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17856f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17867d68702bSBarry Smith 17877d68702bSBarry Smith PetscFunctionBegin; 17886f33a894SBarry Smith if (!Y->preallocated) { 17897d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17906f33a894SBarry Smith } else if (!aij->nz) { 1791b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17926f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1793b83222d8SBarry Smith aij->nonew = nonew; 17947d68702bSBarry Smith } 17957d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17967d68702bSBarry Smith PetscFunctionReturn(0); 17977d68702bSBarry Smith } 17987d68702bSBarry Smith 17993b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 18003b49f96aSBarry Smith { 18013b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 18023b49f96aSBarry Smith PetscErrorCode ierr; 18033b49f96aSBarry Smith 18043b49f96aSBarry Smith PetscFunctionBegin; 18053b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 18063b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 18073b49f96aSBarry Smith if (d) { 18083b49f96aSBarry Smith PetscInt rstart; 18093b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 18103b49f96aSBarry Smith *d += rstart/A->rmap->bs; 18113b49f96aSBarry Smith 18123b49f96aSBarry Smith } 18133b49f96aSBarry Smith PetscFunctionReturn(0); 18143b49f96aSBarry Smith } 18153b49f96aSBarry Smith 1816a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1817a5b7ff6bSBarry Smith { 1818a5b7ff6bSBarry Smith PetscFunctionBegin; 1819a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1820a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1821a5b7ff6bSBarry Smith } 18223b49f96aSBarry Smith 1823a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 18243964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1825a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1826a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1827a9d4b620SHong Zhang MatMult_MPISBAIJ, 182897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1829431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1830431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1831a30f8f8cSSatish Balay 0, 1832a30f8f8cSSatish Balay 0, 1833a30f8f8cSSatish Balay 0, 183497304618SKris Buschelman /* 10*/ 0, 1835a30f8f8cSSatish Balay 0, 1836a30f8f8cSSatish Balay 0, 183741f059aeSBarry Smith MatSOR_MPISBAIJ, 1838a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 183997304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1840a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1841a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1842a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1843a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 184497304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1845a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1846a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1847a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1848d519adbfSMatthew Knepley /* 24*/ 0, 1849a30f8f8cSSatish Balay 0, 1850a30f8f8cSSatish Balay 0, 1851a30f8f8cSSatish Balay 0, 1852a30f8f8cSSatish Balay 0, 18534994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1854b5df2d14SHong Zhang 0, 1855a30f8f8cSSatish Balay 0, 1856a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1857a30f8f8cSSatish Balay 0, 1858d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1859a30f8f8cSSatish Balay 0, 1860a30f8f8cSSatish Balay 0, 1861a30f8f8cSSatish Balay 0, 1862a30f8f8cSSatish Balay 0, 1863d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18647dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1865d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1866a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18673c896bc6SHong Zhang MatCopy_MPISBAIJ, 1868d519adbfSMatthew Knepley /* 44*/ 0, 1869a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18707d68702bSBarry Smith MatShift_MPISBAIJ, 1871a30f8f8cSSatish Balay 0, 1872a30f8f8cSSatish Balay 0, 1873f73d5cc4SBarry Smith /* 49*/ 0, 1874a30f8f8cSSatish Balay 0, 1875a30f8f8cSSatish Balay 0, 1876a30f8f8cSSatish Balay 0, 1877a30f8f8cSSatish Balay 0, 1878d519adbfSMatthew Knepley /* 54*/ 0, 1879a30f8f8cSSatish Balay 0, 1880a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1881a30f8f8cSSatish Balay 0, 1882a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18837dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1884a30f8f8cSSatish Balay 0, 1885a30f8f8cSSatish Balay 0, 1886357abbc8SBarry Smith 0, 188724d5174aSHong Zhang 0, 1888d519adbfSMatthew Knepley /* 64*/ 0, 188924d5174aSHong Zhang 0, 189024d5174aSHong Zhang 0, 189124d5174aSHong Zhang 0, 189224d5174aSHong Zhang 0, 1893d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 189424d5174aSHong Zhang 0, 189528d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 189697304618SKris Buschelman 0, 189797304618SKris Buschelman 0, 1898d519adbfSMatthew Knepley /* 74*/ 0, 189997304618SKris Buschelman 0, 190097304618SKris Buschelman 0, 190197304618SKris Buschelman 0, 190297304618SKris Buschelman 0, 1903d519adbfSMatthew Knepley /* 79*/ 0, 190497304618SKris Buschelman 0, 190597304618SKris Buschelman 0, 190697304618SKris Buschelman 0, 19075bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1908d519adbfSMatthew Knepley /* 84*/ 0, 1909865e5f61SKris Buschelman 0, 1910865e5f61SKris Buschelman 0, 1911865e5f61SKris Buschelman 0, 1912865e5f61SKris Buschelman 0, 1913d519adbfSMatthew Knepley /* 89*/ 0, 1914865e5f61SKris Buschelman 0, 1915865e5f61SKris Buschelman 0, 1916865e5f61SKris Buschelman 0, 1917865e5f61SKris Buschelman 0, 1918d519adbfSMatthew Knepley /* 94*/ 0, 1919865e5f61SKris Buschelman 0, 1920865e5f61SKris Buschelman 0, 192199cafbc1SBarry Smith 0, 192299cafbc1SBarry Smith 0, 1923d519adbfSMatthew Knepley /* 99*/ 0, 192499cafbc1SBarry Smith 0, 192599cafbc1SBarry Smith 0, 192699cafbc1SBarry Smith 0, 192799cafbc1SBarry Smith 0, 1928d519adbfSMatthew Knepley /*104*/ 0, 192999cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1930d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1931d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 193295936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 193395936485SShri Abhyankar /*109*/ 0, 193495936485SShri Abhyankar 0, 193595936485SShri Abhyankar 0, 193695936485SShri Abhyankar 0, 19373b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 193895936485SShri Abhyankar /*114*/ 0, 193995936485SShri Abhyankar 0, 194095936485SShri Abhyankar 0, 194195936485SShri Abhyankar 0, 194295936485SShri Abhyankar 0, 194395936485SShri Abhyankar /*119*/ 0, 194495936485SShri Abhyankar 0, 194595936485SShri Abhyankar 0, 19463964eb88SJed Brown 0, 19473964eb88SJed Brown 0, 19483964eb88SJed Brown /*124*/ 0, 19493964eb88SJed Brown 0, 19503964eb88SJed Brown 0, 19513964eb88SJed Brown 0, 19523964eb88SJed Brown 0, 19533964eb88SJed Brown /*129*/ 0, 19543964eb88SJed Brown 0, 19553964eb88SJed Brown 0, 19563964eb88SJed Brown 0, 19573964eb88SJed Brown 0, 19583964eb88SJed Brown /*134*/ 0, 19593964eb88SJed Brown 0, 19603964eb88SJed Brown 0, 19613964eb88SJed Brown 0, 19623964eb88SJed Brown 0, 196346533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1964f9426fe0SMark Adams 0, 196559f5e6ceSHong Zhang 0, 196659f5e6ceSHong Zhang 0, 196759f5e6ceSHong Zhang 0, 196859f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 196999cafbc1SBarry Smith }; 1970a30f8f8cSSatish Balay 1971b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1972a23d5eceSKris Buschelman { 1973476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 1974dfbe8321SBarry Smith PetscErrorCode ierr; 1975535b19f3SBarry Smith PetscInt i,mbs,Mbs; 19765d2a9ed1SStefano Zampini PetscMPIInt size; 1977a23d5eceSKris Buschelman 1978a23d5eceSKris Buschelman PetscFunctionBegin; 197933d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 198026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 198126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1982e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1983476417e5SBarry Smith if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N); 1984476417e5SBarry Smith if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n); 1985899cda47SBarry Smith 1986d0f46423SBarry Smith mbs = B->rmap->n/bs; 1987d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1988c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1989a23d5eceSKris Buschelman 1990d0f46423SBarry Smith B->rmap->bs = bs; 1991a23d5eceSKris Buschelman b->bs2 = bs*bs; 1992a23d5eceSKris Buschelman b->mbs = mbs; 1993a23d5eceSKris Buschelman b->Mbs = Mbs; 1994de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1995de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1996a23d5eceSKris Buschelman 1997a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1998d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1999a23d5eceSKris Buschelman } 2000d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2001d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2002a23d5eceSKris Buschelman 2003d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2004d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2005a23d5eceSKris Buschelman 2006cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2007cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2008cb7b82ddSBarry Smith #else 2009cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2010cb7b82ddSBarry Smith #endif 2011cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2012cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2013cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2014cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 2015cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 2016cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 2017cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 2018cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 2019cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 2020cb7b82ddSBarry Smith 2021cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 20225d2a9ed1SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2023cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2024cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 20255d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2026cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2027cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2028cb7b82ddSBarry Smith 2029526dfc15SBarry Smith if (!B->preallocated) { 2030f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2031d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 20329c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 20333bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2034ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2035526dfc15SBarry Smith } 2036a23d5eceSKris Buschelman 2037526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2038526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 203926fbe8dcSKarl Rupp 2040526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2041cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2042cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2043a23d5eceSKris Buschelman PetscFunctionReturn(0); 2044a23d5eceSKris Buschelman } 2045a23d5eceSKris Buschelman 2046dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2047dfb205c3SBarry Smith { 204802106b30SBarry Smith PetscInt m,rstart,cend; 20490cd7f59aSBarry Smith PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0; 2050dfb205c3SBarry Smith const PetscInt *JJ =0; 2051dfb205c3SBarry Smith PetscScalar *values=0; 2052bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 2053dfb205c3SBarry Smith PetscErrorCode ierr; 20543bd0feecSPierre Jolivet PetscBool nooffprocentries; 2055dfb205c3SBarry Smith 2056dfb205c3SBarry Smith PetscFunctionBegin; 2057ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2058dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2059dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2060dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2061dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2062e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2063dfb205c3SBarry Smith m = B->rmap->n/bs; 2064dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2065dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2066dfb205c3SBarry Smith 2067dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2068dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2069dfb205c3SBarry Smith for (i=0; i<m; i++) { 2070dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2071dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 20720cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2073dfb205c3SBarry Smith JJ = jj + ii[i]; 20740cd7f59aSBarry Smith bd = 0; 2075dfb205c3SBarry Smith for (j=0; j<nz; j++) { 20760cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2077dfb205c3SBarry Smith JJ++; 20780cd7f59aSBarry Smith bd++; 2079dfb205c3SBarry Smith } 2080dfb205c3SBarry Smith d = 0; 2081dfb205c3SBarry Smith for (; j<nz; j++) { 2082dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2083dfb205c3SBarry Smith d++; 2084dfb205c3SBarry Smith } 2085dfb205c3SBarry Smith d_nnz[i] = d; 20860cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20870cd7f59aSBarry Smith nz = nz - bd; 20880cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2089dfb205c3SBarry Smith } 2090dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2091bb80cfbbSStefano Zampini ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 2092dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2093dfb205c3SBarry Smith 2094dfb205c3SBarry Smith values = (PetscScalar*)V; 2095dfb205c3SBarry Smith if (!values) { 2096580bdb30SBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2097dfb205c3SBarry Smith } 2098dfb205c3SBarry Smith for (i=0; i<m; i++) { 2099dfb205c3SBarry Smith PetscInt row = i + rstart; 2100dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2101dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2102bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2103dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2104dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2105bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2106bb80cfbbSStefano Zampini PetscInt j; 21070cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 21080cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 21090cd7f59aSBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 21100cd7f59aSBarry Smith } 21110cd7f59aSBarry Smith } 2112dfb205c3SBarry Smith } 2113dfb205c3SBarry Smith 2114dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 21153bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 21163bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2117dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2118dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 21193bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 21203bd0feecSPierre Jolivet 21217827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2122dfb205c3SBarry Smith PetscFunctionReturn(0); 2123dfb205c3SBarry Smith } 2124dfb205c3SBarry Smith 21250bad9183SKris Buschelman /*MC 2126fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2127828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2128828413b8SBarry Smith the matrix is stored. 2129828413b8SBarry Smith 2130828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2131828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 21320bad9183SKris Buschelman 21330bad9183SKris Buschelman Options Database Keys: 21340bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 21350bad9183SKris Buschelman 2136476417e5SBarry Smith Notes: 2137476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2138476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2139476417e5SBarry Smith 21400bad9183SKris Buschelman Level: beginner 21410bad9183SKris Buschelman 2142fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType 21430bad9183SKris Buschelman M*/ 21440bad9183SKris Buschelman 21458cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2146b5df2d14SHong Zhang { 2147b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2148dfbe8321SBarry Smith PetscErrorCode ierr; 214994ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2150b5df2d14SHong Zhang 2151b5df2d14SHong Zhang PetscFunctionBegin; 2152b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2153b0a32e0cSBarry Smith B->data = (void*)b; 2154b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2155b5df2d14SHong Zhang 2156b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2157b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2158b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2159b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 216026fbe8dcSKarl Rupp 2161ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2162ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2163b5df2d14SHong Zhang 2164b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2165854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2166b5df2d14SHong Zhang 2167b5df2d14SHong Zhang /* build cache for off array entries formed */ 2168ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 216926fbe8dcSKarl Rupp 2170b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21710298fd71SBarry Smith b->colmap = NULL; 21720298fd71SBarry Smith b->garray = NULL; 2173b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2174b5df2d14SHong Zhang 2175b5df2d14SHong Zhang /* stuff used in block assembly */ 2176b5df2d14SHong Zhang b->barray = 0; 2177b5df2d14SHong Zhang 2178b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2179b5df2d14SHong Zhang b->lvec = 0; 2180b5df2d14SHong Zhang b->Mvctx = 0; 218140781036SHong Zhang b->slvec0 = 0; 218240781036SHong Zhang b->slvec0b = 0; 218340781036SHong Zhang b->slvec1 = 0; 218440781036SHong Zhang b->slvec1a = 0; 218540781036SHong Zhang b->slvec1b = 0; 218640781036SHong Zhang b->sMvctx = 0; 2187b5df2d14SHong Zhang 2188b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2189b5df2d14SHong Zhang b->rowindices = 0; 2190b5df2d14SHong Zhang b->rowvalues = 0; 2191b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2192b5df2d14SHong Zhang 2193b5df2d14SHong Zhang /* hash table stuff */ 2194b5df2d14SHong Zhang b->ht = 0; 2195b5df2d14SHong Zhang b->hd = 0; 2196b5df2d14SHong Zhang b->ht_size = 0; 2197b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2198b5df2d14SHong Zhang b->ht_fact = 0; 2199b5df2d14SHong Zhang b->ht_total_ct = 0; 2200b5df2d14SHong Zhang b->ht_insert_ct = 0; 2201b5df2d14SHong Zhang 22027dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 22037a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 22047a868f3eSHong Zhang 220559ffdab8SBarry Smith b->in_loc = 0; 220659ffdab8SBarry Smith b->v_loc = 0; 220759ffdab8SBarry Smith b->n_loc = 0; 220894ae4db5SBarry Smith 2209bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2210bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2211bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2212bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 22136214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 22146214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 22156214f412SHong Zhang #endif 221628d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 221728d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 2218aa5a9175SDahai Guo 221923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 222023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 222123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 222223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 22239899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 2224eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 222513647f61SHong Zhang B->hermitian = PETSC_FALSE; 222613647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 2227eb1ec7c1SStefano Zampini #else 2228eb1ec7c1SStefano Zampini B->hermitian = PETSC_TRUE; 2229eb1ec7c1SStefano Zampini B->hermitian_set = PETSC_TRUE; 2230eb1ec7c1SStefano Zampini #endif 223113647f61SHong Zhang 223217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 223394ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 223494ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 223594ae4db5SBarry Smith if (flg) { 223694ae4db5SBarry Smith PetscReal fact = 1.39; 223794ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 223894ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 223994ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 224094ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 224194ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 224294ae4db5SBarry Smith } 224394ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2244b5df2d14SHong Zhang PetscFunctionReturn(0); 2245b5df2d14SHong Zhang } 2246b5df2d14SHong Zhang 2247209238afSKris Buschelman /*MC 2248002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2249209238afSKris Buschelman 2250209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2251209238afSKris Buschelman and MATMPISBAIJ otherwise. 2252209238afSKris Buschelman 2253209238afSKris Buschelman Options Database Keys: 2254209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2255209238afSKris Buschelman 2256209238afSKris Buschelman Level: beginner 2257209238afSKris Buschelman 2258209238afSKris Buschelman .seealso: MatCreateMPISBAIJ, MATSEQSBAIJ, MATMPISBAIJ 2259209238afSKris Buschelman M*/ 2260209238afSKris Buschelman 2261b5df2d14SHong Zhang /*@C 2262b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2263b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2264b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2265b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2266b5df2d14SHong Zhang 2267b5df2d14SHong Zhang Collective on Mat 2268b5df2d14SHong Zhang 2269b5df2d14SHong Zhang Input Parameters: 22701c4f3114SJed Brown + B - the matrix 2271bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2272bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2273b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2274b5df2d14SHong Zhang submatrix (same for all local rows) 2275b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22766d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22770298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 227895742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2279b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2280b5df2d14SHong Zhang submatrix (same for all local rows). 2281b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2282c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22830298fd71SBarry Smith (possibly different for each block row) or NULL. 2284b5df2d14SHong Zhang 2285b5df2d14SHong Zhang 2286b5df2d14SHong Zhang Options Database Keys: 2287a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2288b5df2d14SHong Zhang block calculations (much slower) 2289a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2290b5df2d14SHong Zhang 2291b5df2d14SHong Zhang Notes: 2292b5df2d14SHong Zhang 2293b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2294b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2295b5df2d14SHong Zhang 229649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 229749a6f317SBarry Smith 2298b5df2d14SHong Zhang Storage Information: 2299b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2300b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2301b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2302b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2303b5df2d14SHong Zhang 2304b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2305b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 23060298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2307b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2308b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2309b5df2d14SHong Zhang 2310aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2311aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2312aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2313aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2314aa95bbe8SBarry Smith 2315b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2316b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2317b5df2d14SHong Zhang 2318b5df2d14SHong Zhang .vb 2319b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2320a4b1a0f6SJed Brown -------------------------- 2321c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2322c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2323c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2324a4b1a0f6SJed Brown -------------------------- 2325b5df2d14SHong Zhang .ve 2326b5df2d14SHong Zhang 2327b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2328b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23296d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23306d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2331b5df2d14SHong Zhang 23326d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23336d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2334c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2335c2fc9fa9SBarry Smith 2336b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2337b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2338b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2339b5df2d14SHong Zhang matrices. 2340b5df2d14SHong Zhang 2341b5df2d14SHong Zhang Level: intermediate 2342b5df2d14SHong Zhang 2343ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2344b5df2d14SHong Zhang @*/ 23457087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2346b5df2d14SHong Zhang { 23474ac538c5SBarry Smith PetscErrorCode ierr; 2348b5df2d14SHong Zhang 2349b5df2d14SHong Zhang PetscFunctionBegin; 23506ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 23516ba663aaSJed Brown PetscValidType(B,1); 23526ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 23534ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2354b5df2d14SHong Zhang PetscFunctionReturn(0); 2355b5df2d14SHong Zhang } 2356b5df2d14SHong Zhang 2357a30f8f8cSSatish Balay /*@C 235869b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2359a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2360a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2361a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2362a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2363a30f8f8cSSatish Balay 2364d083f849SBarry Smith Collective 2365a30f8f8cSSatish Balay 2366a30f8f8cSSatish Balay Input Parameters: 2367a30f8f8cSSatish Balay + comm - MPI communicator 2368bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2369bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2370a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2371a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2372a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2373a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2374a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2375a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2376a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2377a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2378a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2379a30f8f8cSSatish Balay submatrix (same for all local rows) 2380a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23816d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23820298fd71SBarry Smith (possibly different for each block block row) or NULL. 238395742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 238495742e49SBarry Smith set its value even if it is zero. 2385a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2386a30f8f8cSSatish Balay submatrix (same for all local rows). 2387a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2388a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23890298fd71SBarry Smith each block row) or NULL. 2390a30f8f8cSSatish Balay 2391a30f8f8cSSatish Balay Output Parameter: 2392a30f8f8cSSatish Balay . A - the matrix 2393a30f8f8cSSatish Balay 2394a30f8f8cSSatish Balay Options Database Keys: 2395a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2396a30f8f8cSSatish Balay block calculations (much slower) 2397a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2398a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2399a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2400a30f8f8cSSatish Balay 2401175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2402f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2403175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2404175b88e8SBarry Smith 2405a30f8f8cSSatish Balay Notes: 2406d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 24076d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2408d1be2dadSMatthew Knepley 2409a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2410a30f8f8cSSatish Balay (possibly both). 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2413a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2414a30f8f8cSSatish Balay 241549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 241649a6f317SBarry Smith 2417a30f8f8cSSatish Balay Storage Information: 2418a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2419a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2420a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2421a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2422a30f8f8cSSatish Balay 2423a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2424a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 24250298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2426a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2427a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2428a30f8f8cSSatish Balay 2429a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2430a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2431a30f8f8cSSatish Balay 2432a30f8f8cSSatish Balay .vb 2433a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2434a4b1a0f6SJed Brown -------------------------- 2435c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2436c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2437c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2438a4b1a0f6SJed Brown -------------------------- 2439a30f8f8cSSatish Balay .ve 2440a30f8f8cSSatish Balay 2441a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2442a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24436d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24446d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2445a30f8f8cSSatish Balay 24466d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24476d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2448a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2449a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2450a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2451a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2452a30f8f8cSSatish Balay matrices. 2453a30f8f8cSSatish Balay 2454a30f8f8cSSatish Balay Level: intermediate 2455a30f8f8cSSatish Balay 245669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2457a30f8f8cSSatish Balay @*/ 2458a30f8f8cSSatish Balay 245969b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2460a30f8f8cSSatish Balay { 24616849ba73SBarry Smith PetscErrorCode ierr; 24621302d50aSBarry Smith PetscMPIInt size; 2463a30f8f8cSSatish Balay 2464a30f8f8cSSatish Balay PetscFunctionBegin; 2465f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2466f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2467273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2468273d9f13SBarry Smith if (size > 1) { 2469b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2470b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2471273d9f13SBarry Smith } else { 2472273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2473273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2474273d9f13SBarry Smith } 2475a30f8f8cSSatish Balay PetscFunctionReturn(0); 2476a30f8f8cSSatish Balay } 2477a30f8f8cSSatish Balay 2478a30f8f8cSSatish Balay 24796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2480a30f8f8cSSatish Balay { 2481a30f8f8cSSatish Balay Mat mat; 2482a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2483dfbe8321SBarry Smith PetscErrorCode ierr; 2484d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2485387bc808SHong Zhang PetscScalar *array; 2486a30f8f8cSSatish Balay 2487a30f8f8cSSatish Balay PetscFunctionBegin; 2488a30f8f8cSSatish Balay *newmat = 0; 248926fbe8dcSKarl Rupp 2490ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2491d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 24927adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24931e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 24941e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2495e1b6402fSHong Zhang 2496d5f3da31SBarry Smith mat->factortype = matin->factortype; 2497273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 249882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24997fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 25007fff6886SHong Zhang 2501b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2502a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2503a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2504a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2505a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2506a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2507a30f8f8cSSatish Balay 2508a30f8f8cSSatish Balay a->size = oldmat->size; 2509a30f8f8cSSatish Balay a->rank = oldmat->rank; 2510a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2511a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2512a30f8f8cSSatish Balay a->rowindices = 0; 2513a30f8f8cSSatish Balay a->rowvalues = 0; 2514a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2515a30f8f8cSSatish Balay a->barray = 0; 2516899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2517899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2518899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2519899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2520a30f8f8cSSatish Balay 2521a30f8f8cSSatish Balay /* hash table stuff */ 2522a30f8f8cSSatish Balay a->ht = 0; 2523a30f8f8cSSatish Balay a->hd = 0; 2524a30f8f8cSSatish Balay a->ht_size = 0; 2525a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2526a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2527a30f8f8cSSatish Balay a->ht_total_ct = 0; 2528a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2529a30f8f8cSSatish Balay 2530580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr); 2531a30f8f8cSSatish Balay if (oldmat->colmap) { 2532a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2533a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2534a30f8f8cSSatish Balay #else 2535854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 25363bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2537580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 2538a30f8f8cSSatish Balay #endif 2539a30f8f8cSSatish Balay } else a->colmap = 0; 2540387bc808SHong Zhang 2541a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2542785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 25433bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2544580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 2545a30f8f8cSSatish Balay } else a->garray = 0; 2546a30f8f8cSSatish Balay 2547ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2548a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 25493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2550a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 25513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 255282327fa8SHong Zhang 255382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 25543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 255582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 25563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2557387bc808SHong Zhang 2558387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 25591ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2560778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2561778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 25621ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 25631ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2564778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 25651ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 25663bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 25673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 25683bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 25693bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 25703bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2571387bc808SHong Zhang 2572387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2573387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2574387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 25753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 257682327fa8SHong Zhang 2577a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25783bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2579a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 25803bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2581140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2582a30f8f8cSSatish Balay *newmat = mat; 2583a30f8f8cSSatish Balay PetscFunctionReturn(0); 2584a30f8f8cSSatish Balay } 2585a30f8f8cSSatish Balay 2586618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2587618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2588618cc2edSLisandro Dalcin 2589618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer) 259095936485SShri Abhyankar { 259195936485SShri Abhyankar PetscErrorCode ierr; 25927f489da9SVaclav Hapla PetscBool isbinary; 259395936485SShri Abhyankar 259495936485SShri Abhyankar PetscFunctionBegin; 25957f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 2596618cc2edSLisandro Dalcin if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 2597618cc2edSLisandro Dalcin ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 259895936485SShri Abhyankar PetscFunctionReturn(0); 259995936485SShri Abhyankar } 260095936485SShri Abhyankar 2601dcf5cc72SBarry Smith /*XXXXX@ 2602a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2603a30f8f8cSSatish Balay 2604a30f8f8cSSatish Balay Input Parameters: 2605a30f8f8cSSatish Balay . mat - the matrix 2606a30f8f8cSSatish Balay . fact - factor 2607a30f8f8cSSatish Balay 2608c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2609a30f8f8cSSatish Balay 2610a30f8f8cSSatish Balay Level: advanced 2611a30f8f8cSSatish Balay 2612a30f8f8cSSatish Balay Notes: 2613a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2614a30f8f8cSSatish Balay 2615a30f8f8cSSatish Balay .seealso: MatSetOption() 2616dcf5cc72SBarry Smith @XXXXX*/ 2617dcf5cc72SBarry Smith 261824d5174aSHong Zhang 2619985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 262024d5174aSHong Zhang { 262124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2622f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2623ca54ac64SHong Zhang PetscReal atmp; 262487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2625dfbe8321SBarry Smith PetscErrorCode ierr; 26261302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 26271302d50aSBarry Smith PetscMPIInt rank,size; 26281302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 262987828ca2SBarry Smith PetscScalar *va; 26308a1c53f2SBarry Smith MatScalar *ba; 2631f4c0e9e4SHong Zhang MPI_Status stat; 263224d5174aSHong Zhang 263324d5174aSHong Zhang PetscFunctionBegin; 2634e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 26350298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 26361ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2637f4c0e9e4SHong Zhang 2638ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2639ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2640f4c0e9e4SHong Zhang 2641d0f46423SBarry Smith bs = A->rmap->bs; 2642f4c0e9e4SHong Zhang mbs = a->mbs; 2643f4c0e9e4SHong Zhang Mbs = a->Mbs; 2644f4c0e9e4SHong Zhang ba = b->a; 2645f4c0e9e4SHong Zhang bi = b->i; 2646f4c0e9e4SHong Zhang bj = b->j; 2647f4c0e9e4SHong Zhang 2648f4c0e9e4SHong Zhang /* find ownerships */ 2649d0f46423SBarry Smith rowners_bs = A->rmap->range; 2650f4c0e9e4SHong Zhang 2651f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2652580bdb30SBarry Smith ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2653f4c0e9e4SHong Zhang 2654f4c0e9e4SHong Zhang /* row_max for B */ 2655b8475685SHong Zhang if (rank != size-1) { 2656f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2657f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2658f4c0e9e4SHong Zhang brow = bs*i; 2659f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2660f4c0e9e4SHong Zhang bcol = bs*(*bj); 2661f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2662ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 266304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2664f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2665f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2666ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2667ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2668f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2669f4c0e9e4SHong Zhang } 2670f4c0e9e4SHong Zhang } 2671f4c0e9e4SHong Zhang bj++; 2672f4c0e9e4SHong Zhang } 2673f4c0e9e4SHong Zhang } 2674f4c0e9e4SHong Zhang 2675f4c0e9e4SHong Zhang /* send values to its owners */ 2676f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2677f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2678ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2679ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2680ca54ac64SHong Zhang } 2681f4c0e9e4SHong Zhang } 2682f4c0e9e4SHong Zhang 2683f4c0e9e4SHong Zhang /* receive values */ 2684ca54ac64SHong Zhang if (rank) { 2685f4c0e9e4SHong Zhang rvalues = work; 2686ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2687f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2688ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2689f4c0e9e4SHong Zhang /* process values */ 2690f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2691ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2692f4c0e9e4SHong Zhang } 2693f4c0e9e4SHong Zhang } 2694ca54ac64SHong Zhang } 2695f4c0e9e4SHong Zhang 26961ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2697ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 269824d5174aSHong Zhang PetscFunctionReturn(0); 269924d5174aSHong Zhang } 27002798e883SHong Zhang 270141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 27022798e883SHong Zhang { 27032798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2704dfbe8321SBarry Smith PetscErrorCode ierr; 2705d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 27063649974fSBarry Smith PetscScalar *x,*ptr,*from; 2707ffe4fb16SHong Zhang Vec bb1; 27083649974fSBarry Smith const PetscScalar *b; 2709ffe4fb16SHong Zhang 2710ffe4fb16SHong Zhang PetscFunctionBegin; 2711e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2712e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2713ffe4fb16SHong Zhang 2714a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 271541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2716a2b30743SBarry Smith PetscFunctionReturn(0); 2717a2b30743SBarry Smith } 2718a2b30743SBarry Smith 2719ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2720ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 272141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2722ffe4fb16SHong Zhang its--; 2723ffe4fb16SHong Zhang } 2724ffe4fb16SHong Zhang 2725ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2726ffe4fb16SHong Zhang while (its--) { 2727ffe4fb16SHong Zhang 2728ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2729ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2730ffe4fb16SHong Zhang 2731ffe4fb16SHong Zhang /* copy xx into slvec0a */ 27321ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 27331ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2734580bdb30SBarry Smith ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr); 27351ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2736ffe4fb16SHong Zhang 2737efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2738ffe4fb16SHong Zhang 2739ffe4fb16SHong Zhang /* copy bb into slvec1a */ 27401ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 27413649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2742580bdb30SBarry Smith ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr); 27431ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2744ffe4fb16SHong Zhang 2745ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2746fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2747ffe4fb16SHong Zhang 2748ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27491ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2750a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2751ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2752ffe4fb16SHong Zhang 2753ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2754ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2755ffe4fb16SHong Zhang 2756ffe4fb16SHong Zhang /* local diagonal sweep */ 275741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2758ffe4fb16SHong Zhang } 27596bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2760fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 276141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2762fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 276341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2764fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2765fa22f6d0SBarry Smith Vec xx1; 2766ace3abfcSBarry Smith PetscBool hasop; 276720f1ed55SBarry Smith const PetscScalar *diag; 2768887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 276920f1ed55SBarry Smith PetscInt i,n; 2770fa22f6d0SBarry Smith 2771fa22f6d0SBarry Smith if (!mat->xx1) { 2772fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2773fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2774fa22f6d0SBarry Smith } 2775fa22f6d0SBarry Smith xx1 = mat->xx1; 2776fa22f6d0SBarry Smith bb1 = mat->bb1; 2777fa22f6d0SBarry Smith 277841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2779fa22f6d0SBarry Smith 2780fa22f6d0SBarry Smith if (!mat->diag) { 2781effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27822a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2783fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2784fa22f6d0SBarry Smith } 2785fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2786fa22f6d0SBarry Smith 2787fa22f6d0SBarry Smith if (hasop) { 2788fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2789887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 279020f1ed55SBarry Smith } else { 279120f1ed55SBarry Smith /* 279220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 279320f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2794887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 279520f1ed55SBarry Smith */ 279620f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27973649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27983649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 279920f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 280020f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2801887ee2caSBarry Smith if (omega == 1.0) { 280226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 280320f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2804887ee2caSBarry Smith } else { 280526fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2806887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2807887ee2caSBarry Smith } 280820f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 28093649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 28103649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 281120f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 281220f1ed55SBarry Smith } 2813fa22f6d0SBarry Smith 2814fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2815fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2816fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2817fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2818fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2819580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 2820fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2821fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2822fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2823fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2824effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2825fa22f6d0SBarry Smith 2826fa22f6d0SBarry Smith /* local sweep */ 282741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2828fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2829f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2830ffe4fb16SHong Zhang PetscFunctionReturn(0); 2831ffe4fb16SHong Zhang } 2832ffe4fb16SHong Zhang 283341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2834ffe4fb16SHong Zhang { 2835ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2836dfbe8321SBarry Smith PetscErrorCode ierr; 28372798e883SHong Zhang Vec lvec1,bb1; 28382798e883SHong Zhang 28392798e883SHong Zhang PetscFunctionBegin; 2840e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2841e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 28422798e883SHong Zhang 2843c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 28442798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 284541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 28462798e883SHong Zhang its--; 28472798e883SHong Zhang } 28482798e883SHong Zhang 28492798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 28502798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 28512798e883SHong Zhang while (its--) { 2852ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 28532798e883SHong Zhang 28542798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 28552798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2856efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 28572798e883SHong Zhang 2858ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 28592798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2860ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 28612798e883SHong Zhang 28622798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2863efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 28642798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 28652798e883SHong Zhang 2866ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 28672798e883SHong Zhang 2868c14dc6b6SHong Zhang /* diagonal sweep */ 286941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 28702798e883SHong Zhang } 28716bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 28726bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 28736bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 28742798e883SHong Zhang PetscFunctionReturn(0); 28752798e883SHong Zhang } 28762798e883SHong Zhang 2877dfb205c3SBarry Smith /*@ 2878dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2879dfb205c3SBarry Smith CSR format the local rows. 2880dfb205c3SBarry Smith 2881d083f849SBarry Smith Collective 2882dfb205c3SBarry Smith 2883dfb205c3SBarry Smith Input Parameters: 2884dfb205c3SBarry Smith + comm - MPI communicator 2885dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2886dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2887dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2888dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2889dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2890dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2891dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2892483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2893dfb205c3SBarry Smith . j - column indices 2894dfb205c3SBarry Smith - a - matrix values 2895dfb205c3SBarry Smith 2896dfb205c3SBarry Smith Output Parameter: 2897dfb205c3SBarry Smith . mat - the matrix 2898dfb205c3SBarry Smith 2899dfb205c3SBarry Smith Level: intermediate 2900dfb205c3SBarry Smith 2901dfb205c3SBarry Smith Notes: 2902dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2903dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2904dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2905dfb205c3SBarry Smith 2906dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2907dfb205c3SBarry Smith 2908dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 290969b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2910dfb205c3SBarry Smith @*/ 29117087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2912dfb205c3SBarry Smith { 2913dfb205c3SBarry Smith PetscErrorCode ierr; 2914dfb205c3SBarry Smith 2915dfb205c3SBarry Smith 2916dfb205c3SBarry Smith PetscFunctionBegin; 2917f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2918dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2919dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2920dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2921dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2922dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2923dfb205c3SBarry Smith PetscFunctionReturn(0); 2924dfb205c3SBarry Smith } 2925dfb205c3SBarry Smith 2926dfb205c3SBarry Smith 2927dfb205c3SBarry Smith /*@C 2928664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 2929dfb205c3SBarry Smith 2930d083f849SBarry Smith Collective 2931dfb205c3SBarry Smith 2932dfb205c3SBarry Smith Input Parameters: 29331c4f3114SJed Brown + B - the matrix 2934dfb205c3SBarry Smith . bs - the block size 2935dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2936dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2937dfb205c3SBarry Smith - v - optional values in the matrix 2938dfb205c3SBarry Smith 2939664954b6SBarry Smith Level: advanced 2940664954b6SBarry Smith 2941664954b6SBarry Smith Notes: 29420cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 29430cd7f59aSBarry Smith and usually the numerical values as well 29440cd7f59aSBarry Smith 294550c5228eSBarry Smith Any entries below the diagonal are ignored 2946dfb205c3SBarry Smith 294769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2948dfb205c3SBarry Smith @*/ 29497087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2950dfb205c3SBarry Smith { 29514ac538c5SBarry Smith PetscErrorCode ierr; 2952dfb205c3SBarry Smith 2953dfb205c3SBarry Smith PetscFunctionBegin; 29544ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2955dfb205c3SBarry Smith PetscFunctionReturn(0); 2956dfb205c3SBarry Smith } 2957dfb205c3SBarry Smith 295810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 29594dcd73b1SHong Zhang { 29604dcd73b1SHong Zhang PetscErrorCode ierr; 296110c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 296210c56fdeSHong Zhang PetscInt *indx; 296310c56fdeSHong Zhang PetscScalar *values; 2964dfb205c3SBarry Smith 29654dcd73b1SHong Zhang PetscFunctionBegin; 29664dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 296710c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 296810c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 2969de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 297010c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 2971de25e9cbSPierre Jolivet PetscMPIInt rank,size; 29724dcd73b1SHong Zhang 297310c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 297410c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 297510c56fdeSHong Zhang if (n == PETSC_DECIDE) { 2976da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 297710c56fdeSHong Zhang } 2978da91a574SPierre Jolivet nbs = n/cbs; 29794dcd73b1SHong Zhang 29804dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 2981de25e9cbSPierre Jolivet ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 2982de25e9cbSPierre Jolivet 2983de25e9cbSPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2984de25e9cbSPierre Jolivet ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr); 2985de25e9cbSPierre Jolivet if (rank == size-1) { 2986de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 2987de25e9cbSPierre Jolivet if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 2988de25e9cbSPierre Jolivet } 2989de25e9cbSPierre Jolivet 2990de25e9cbSPierre Jolivet rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 2991e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 299210c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29934dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29944dcd73b1SHong Zhang nnz = nnz/bs; 29954dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29964dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29974dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29984dcd73b1SHong Zhang } 2999e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 30004dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 30014dcd73b1SHong Zhang 30024dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 3003de25e9cbSPierre Jolivet ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 30044dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 3005ce94fc41SPierre Jolivet ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr); 3006ce94fc41SPierre Jolivet ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 30074dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 30084dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 30094dcd73b1SHong Zhang } 30104dcd73b1SHong Zhang 301110c56fdeSHong Zhang /* numeric phase */ 30124dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 301310c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 30144dcd73b1SHong Zhang 3015e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 30164dcd73b1SHong Zhang for (i=0; i<m; i++) { 30174dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 30184dcd73b1SHong Zhang Ii = i + rstart; 301910c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 30204dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 30214dcd73b1SHong Zhang } 3022e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 302310c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 302410c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 30254dcd73b1SHong Zhang PetscFunctionReturn(0); 30264dcd73b1SHong Zhang } 3027