1*d0566740SHong Zhang /*$Id: mpisbaij.c,v 1.25 2000/10/10 19:50:21 hzhang Exp hzhang $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 11a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12a30f8f8cSSatish Balay extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *); 13a30f8f8cSSatish Balay extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15a30f8f8cSSatish Balay extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 16a30f8f8cSSatish Balay extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 18a30f8f8cSSatish Balay extern int MatZeroRows_SeqSBAIJ(Mat,IS,Scalar*); 1900319c27SSatish Balay extern int MatZeroRows_SeqBAIJ(Mat,IS,Scalar *); 20*d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 21a30f8f8cSSatish Balay 22a30f8f8cSSatish Balay /* UGLY, ugly, ugly 23a30f8f8cSSatish Balay When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 24a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 25a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 26a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 27a30f8f8cSSatish Balay into the single precision data structures. 28a30f8f8cSSatish Balay */ 29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay #else 36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 41a30f8f8cSSatish Balay #endif 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay EXTERN_C_BEGIN 44a30f8f8cSSatish Balay #undef __FUNC__ 45f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatStoreValues_MPISBAIJ"></a>*/"MatStoreValues_MPISBAIJ" 46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 47a30f8f8cSSatish Balay { 48f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 49a30f8f8cSSatish Balay int ierr; 50a30f8f8cSSatish Balay 51a30f8f8cSSatish Balay PetscFunctionBegin; 52a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 54a30f8f8cSSatish Balay PetscFunctionReturn(0); 55a30f8f8cSSatish Balay } 56a30f8f8cSSatish Balay EXTERN_C_END 57a30f8f8cSSatish Balay 58a30f8f8cSSatish Balay EXTERN_C_BEGIN 59a30f8f8cSSatish Balay #undef __FUNC__ 60f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatRetrieveValues_MPISBAIJ"></a>*/"MatRetrieveValues_MPISBAIJ" 61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 62a30f8f8cSSatish Balay { 63f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 64a30f8f8cSSatish Balay int ierr; 65a30f8f8cSSatish Balay 66a30f8f8cSSatish Balay PetscFunctionBegin; 67a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 69a30f8f8cSSatish Balay PetscFunctionReturn(0); 70a30f8f8cSSatish Balay } 71a30f8f8cSSatish Balay EXTERN_C_END 72a30f8f8cSSatish Balay 73a30f8f8cSSatish Balay /* 74a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 75a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 76a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 77a30f8f8cSSatish Balay length of colmap equals the global matrix length. 78a30f8f8cSSatish Balay */ 79a30f8f8cSSatish Balay #undef __FUNC__ 80a30f8f8cSSatish Balay #define __FUNC__ /*<a name="CreateColmap_MPISBAIJ_Private"></a>*/"CreateColmap_MPISBAIJ_Private" 81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 82a30f8f8cSSatish Balay { 83a30f8f8cSSatish Balay PetscFunctionBegin; 8429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 86a30f8f8cSSatish Balay } 87a30f8f8cSSatish Balay 88a30f8f8cSSatish Balay #define CHUNKSIZE 10 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 91a30f8f8cSSatish Balay { \ 92a30f8f8cSSatish Balay \ 93a30f8f8cSSatish Balay brow = row/bs; \ 94a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 96a30f8f8cSSatish Balay bcol = col/bs; \ 97a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 98a30f8f8cSSatish Balay low = 0; high = nrow; \ 99a30f8f8cSSatish Balay while (high-low > 3) { \ 100a30f8f8cSSatish Balay t = (low+high)/2; \ 101a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 102a30f8f8cSSatish Balay else low = t; \ 103a30f8f8cSSatish Balay } \ 104a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 105a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 106a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 107a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 108a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 109a30f8f8cSSatish Balay else *bap = value; \ 110a30f8f8cSSatish Balay goto a_noinsert; \ 111a30f8f8cSSatish Balay } \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11429bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 115a30f8f8cSSatish Balay if (nrow >= rmax) { \ 116a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 117a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 118a30f8f8cSSatish Balay MatScalar *new_a; \ 119a30f8f8cSSatish Balay \ 12029bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 121a30f8f8cSSatish Balay \ 122a30f8f8cSSatish Balay /* malloc new storage space */ \ 123a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 124a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 125a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 126a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 127a30f8f8cSSatish Balay \ 128a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 129a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 130a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 131a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 132a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 135a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 137a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay /* free up old matrix storage */ \ 139a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 143a30f8f8cSSatish Balay } \ 144a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 145a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 146a30f8f8cSSatish Balay \ 147a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 148a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 149a30f8f8cSSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 150a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 151a30f8f8cSSatish Balay a->reallocs++; \ 152a30f8f8cSSatish Balay a->s_nz++; \ 153a30f8f8cSSatish Balay } \ 154a30f8f8cSSatish Balay N = nrow++ - 1; \ 155a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 156a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 157a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 158a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 159a30f8f8cSSatish Balay } \ 160a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 161a30f8f8cSSatish Balay rp[_i] = bcol; \ 162a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 163a30f8f8cSSatish Balay a_noinsert:; \ 164a30f8f8cSSatish Balay ailen[brow] = nrow; \ 165a30f8f8cSSatish Balay } 166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 167a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 168a30f8f8cSSatish Balay { \ 169a30f8f8cSSatish Balay brow = row/bs; \ 170a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 171a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 172a30f8f8cSSatish Balay bcol = col/bs; \ 173a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 174a30f8f8cSSatish Balay low = 0; high = nrow; \ 175a30f8f8cSSatish Balay while (high-low > 3) { \ 176a30f8f8cSSatish Balay t = (low+high)/2; \ 177a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 178a30f8f8cSSatish Balay else low = t; \ 179a30f8f8cSSatish Balay } \ 180a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 181a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 182a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 183a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 184a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 185a30f8f8cSSatish Balay else *bap = value; \ 186a30f8f8cSSatish Balay goto b_noinsert; \ 187a30f8f8cSSatish Balay } \ 188a30f8f8cSSatish Balay } \ 189a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19029bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 191a30f8f8cSSatish Balay if (nrow >= rmax) { \ 192a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 193a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 194a30f8f8cSSatish Balay MatScalar *new_a; \ 195a30f8f8cSSatish Balay \ 19629bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 197a30f8f8cSSatish Balay \ 198a30f8f8cSSatish Balay /* malloc new storage space */ \ 199a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 200a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 201a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 202a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 203a30f8f8cSSatish Balay \ 204a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 205a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 206a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 207a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 208a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 213a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay /* free up old matrix storage */ \ 215a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 219a30f8f8cSSatish Balay } \ 220a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 221a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 222a30f8f8cSSatish Balay \ 223a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 224a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 225a30f8f8cSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 226a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 227a30f8f8cSSatish Balay b->reallocs++; \ 228a30f8f8cSSatish Balay b->nz++; \ 229a30f8f8cSSatish Balay } \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 232a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 233a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 234a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 235a30f8f8cSSatish Balay } \ 236a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 237a30f8f8cSSatish Balay rp[_i] = bcol; \ 238a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 239a30f8f8cSSatish Balay b_noinsert:; \ 240a30f8f8cSSatish Balay bilen[brow] = nrow; \ 241a30f8f8cSSatish Balay } 242a30f8f8cSSatish Balay #endif 243a30f8f8cSSatish Balay 244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 245a30f8f8cSSatish Balay #undef __FUNC__ 246a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ"></a>*/"MatSetValues_MPISBAIJ" 247a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 248a30f8f8cSSatish Balay { 249a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 250a30f8f8cSSatish Balay int ierr,i,N = m*n; 251a30f8f8cSSatish Balay MatScalar *vsingle; 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay PetscFunctionBegin; 254a30f8f8cSSatish Balay if (N > b->setvalueslen) { 255a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 256a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 257a30f8f8cSSatish Balay b->setvalueslen = N; 258a30f8f8cSSatish Balay } 259a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 260a30f8f8cSSatish Balay 261a30f8f8cSSatish Balay for (i=0; i<N; i++) { 262a30f8f8cSSatish Balay vsingle[i] = v[i]; 263a30f8f8cSSatish Balay } 264a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 265a30f8f8cSSatish Balay PetscFunctionReturn(0); 266a30f8f8cSSatish Balay } 267a30f8f8cSSatish Balay 268a30f8f8cSSatish Balay #undef __FUNC__ 269a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 270a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 271a30f8f8cSSatish Balay { 272a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 273a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 274a30f8f8cSSatish Balay MatScalar *vsingle; 275a30f8f8cSSatish Balay 276a30f8f8cSSatish Balay PetscFunctionBegin; 277a30f8f8cSSatish Balay if (N > b->setvalueslen) { 278a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 279a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 280a30f8f8cSSatish Balay b->setvalueslen = N; 281a30f8f8cSSatish Balay } 282a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 283a30f8f8cSSatish Balay for (i=0; i<N; i++) { 284a30f8f8cSSatish Balay vsingle[i] = v[i]; 285a30f8f8cSSatish Balay } 286a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 287a30f8f8cSSatish Balay PetscFunctionReturn(0); 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay 290a30f8f8cSSatish Balay #undef __FUNC__ 291a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT"></a>*/"MatSetValues_MPISBAIJ_HT" 292a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 293a30f8f8cSSatish Balay { 294a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 295a30f8f8cSSatish Balay int ierr,i,N = m*n; 296a30f8f8cSSatish Balay MatScalar *vsingle; 297a30f8f8cSSatish Balay 298a30f8f8cSSatish Balay PetscFunctionBegin; 29929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3004d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 301a30f8f8cSSatish Balay } 302a30f8f8cSSatish Balay 303a30f8f8cSSatish Balay #undef __FUNC__ 304a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ_HT"></a>*/"MatSetValuesBlocked_MPISBAIJ_HT" 305a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 306a30f8f8cSSatish Balay { 307a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 308a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 309a30f8f8cSSatish Balay MatScalar *vsingle; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay PetscFunctionBegin; 31229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3134d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay #endif 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 318a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 319a30f8f8cSSatish Balay */ 320a30f8f8cSSatish Balay #undef __FUNC__ 321a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPIBAIJ"></a>*/"MatSetValues_MPIBAIJ" 322a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 323a30f8f8cSSatish Balay { 324a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 325a30f8f8cSSatish Balay MatScalar value; 326a30f8f8cSSatish Balay int ierr,i,j,row,col; 327a30f8f8cSSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 328a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 329a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 330a30f8f8cSSatish Balay 331a30f8f8cSSatish Balay /* Some Variables required in the macro */ 332a30f8f8cSSatish Balay Mat A = baij->A; 333a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 334a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 335a30f8f8cSSatish Balay MatScalar *aa=a->a; 336a30f8f8cSSatish Balay 337a30f8f8cSSatish Balay Mat B = baij->B; 338a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 339a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 340a30f8f8cSSatish Balay MatScalar *ba=b->a; 341a30f8f8cSSatish Balay 342a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 343a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 344a30f8f8cSSatish Balay MatScalar *ap,*bap; 345a30f8f8cSSatish Balay 346a30f8f8cSSatish Balay /* for stash */ 347f65c83cfSHong Zhang int n_loc, *in_loc=0; 348f65c83cfSHong Zhang MatScalar *v_loc=0; 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay PetscFunctionBegin; 351a30f8f8cSSatish Balay 352a30f8f8cSSatish Balay if(!baij->donotstash){ 353a30f8f8cSSatish Balay in_loc = (int*)PetscMalloc(n*sizeof(int));CHKPTRQ(in_loc); 354a30f8f8cSSatish Balay v_loc = (MatScalar*)PetscMalloc(n*sizeof(MatScalar));CHKPTRQ(v_loc); 355a30f8f8cSSatish Balay } 356a30f8f8cSSatish Balay 357a30f8f8cSSatish Balay for (i=0; i<m; i++) { 358a30f8f8cSSatish Balay if (im[i] < 0) continue; 359a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 36029bbc08cSBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 361a30f8f8cSSatish Balay #endif 362a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 363a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 364a30f8f8cSSatish Balay for (j=0; j<n; j++) { 365f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 366a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 367a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 368a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 369a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 370a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 371a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 372a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 373a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 374a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 37529bbc08cSBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 376a30f8f8cSSatish Balay #endif 377a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 378a30f8f8cSSatish Balay if (mat->was_assembled) { 379a30f8f8cSSatish Balay if (!baij->colmap) { 380a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 383a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 384a30f8f8cSSatish Balay col = col - 1 + in[j]%bs; 385a30f8f8cSSatish Balay #else 386a30f8f8cSSatish Balay col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 387a30f8f8cSSatish Balay #endif 388a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 389a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 390a30f8f8cSSatish Balay col = in[j]; 391a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 392a30f8f8cSSatish Balay B = baij->B; 393a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 394a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 395a30f8f8cSSatish Balay ba=b->a; 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } else col = in[j]; 398a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 399a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 400a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } else { /* off processor entry */ 404a30f8f8cSSatish Balay if (!baij->donotstash) { 405a30f8f8cSSatish Balay n_loc = 0; 406a30f8f8cSSatish Balay for (j=0; j<n; j++){ 407f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 408a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 409a30f8f8cSSatish Balay if (roworiented) { 410a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 411a30f8f8cSSatish Balay } else { 412a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 413a30f8f8cSSatish Balay } 414a30f8f8cSSatish Balay n_loc++; 415a30f8f8cSSatish Balay } 416a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 421a30f8f8cSSatish Balay if(!baij->donotstash){ 422a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 423a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 424a30f8f8cSSatish Balay } 425a30f8f8cSSatish Balay PetscFunctionReturn(0); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay 428a30f8f8cSSatish Balay #undef __FUNC__ 429a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 430a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 431a30f8f8cSSatish Balay { 432a30f8f8cSSatish Balay PetscFunctionBegin; 43329bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 435a30f8f8cSSatish Balay } 436a30f8f8cSSatish Balay 437a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 438a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 439a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 440a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 441a30f8f8cSSatish Balay #undef __FUNC__ 442a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT_MatScalar"></a>*/"MatSetValues_MPISBAIJ_HT_MatScalar" 443a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 444a30f8f8cSSatish Balay { 445a30f8f8cSSatish Balay PetscFunctionBegin; 44629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 44796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 448a30f8f8cSSatish Balay } 449a30f8f8cSSatish Balay 450a30f8f8cSSatish Balay #undef __FUNC__ 451a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 452a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 453a30f8f8cSSatish Balay { 454a30f8f8cSSatish Balay PetscFunctionBegin; 45529bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 457a30f8f8cSSatish Balay } 458a30f8f8cSSatish Balay 459a30f8f8cSSatish Balay #undef __FUNC__ 460a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetValues_MPISBAIJ" 461a30f8f8cSSatish Balay int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 462a30f8f8cSSatish Balay { 463f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 464a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 465a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 466a30f8f8cSSatish Balay 467a30f8f8cSSatish Balay PetscFunctionBegin; 468a30f8f8cSSatish Balay for (i=0; i<m; i++) { 46929bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 47029bbc08cSBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 471a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 472a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 473a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47429bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 47529bbc08cSBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 476a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 477a30f8f8cSSatish Balay col = idxn[j] - bscstart; 478c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 479a30f8f8cSSatish Balay } else { 480a30f8f8cSSatish Balay if (!baij->colmap) { 481a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 482a30f8f8cSSatish Balay } 483a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 484a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 485a30f8f8cSSatish Balay data --; 486a30f8f8cSSatish Balay #else 487a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 488a30f8f8cSSatish Balay #endif 489a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 490a30f8f8cSSatish Balay else { 491a30f8f8cSSatish Balay col = data + idxn[j]%bs; 492c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 493a30f8f8cSSatish Balay } 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay } else { 49729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay } 500a30f8f8cSSatish Balay PetscFunctionReturn(0); 501a30f8f8cSSatish Balay } 502a30f8f8cSSatish Balay 503a30f8f8cSSatish Balay #undef __FUNC__ 504a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatNorm_MPISBAIJ" 505a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 506a30f8f8cSSatish Balay { 507a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 508bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 509bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 510a30f8f8cSSatish Balay int ierr; 511a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 512a30f8f8cSSatish Balay 513a30f8f8cSSatish Balay PetscFunctionBegin; 514a30f8f8cSSatish Balay if (baij->size == 1) { 515a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 516a30f8f8cSSatish Balay } else { 517a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 518ee237329SHong Zhang lnorm2 = (double*)PetscMalloc(2*sizeof(double));CHKPTRQ(lnorm2); 519a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 520a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 521a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 522a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 523a30f8f8cSSatish Balay /* 524a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 525a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 526a30f8f8cSSatish Balay */ 527a30f8f8cSSatish Balay ierr = MPI_Allreduce(lnorm2,&sum,2,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 528a30f8f8cSSatish Balay /* 529a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 530a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 531a30f8f8cSSatish Balay 532a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 533a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 534a30f8f8cSSatish Balay } else { 53529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay PetscFunctionReturn(0); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay 541a30f8f8cSSatish Balay /* 542a30f8f8cSSatish Balay Creates the hash table, and sets the table 543a30f8f8cSSatish Balay This table is created only once. 544a30f8f8cSSatish Balay If new entried need to be added to the matrix 545a30f8f8cSSatish Balay then the hash table has to be destroyed and 546a30f8f8cSSatish Balay recreated. 547a30f8f8cSSatish Balay */ 548a30f8f8cSSatish Balay #undef __FUNC__ 549a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateHashTable_MPISBAIJ_Private" 550a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 551a30f8f8cSSatish Balay { 552a30f8f8cSSatish Balay PetscFunctionBegin; 55329bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 555a30f8f8cSSatish Balay } 556a30f8f8cSSatish Balay 557a30f8f8cSSatish Balay #undef __FUNC__ 558a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyBegin_MPISBAIJ" 559a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 560a30f8f8cSSatish Balay { 561a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 562a30f8f8cSSatish Balay int ierr,nstash,reallocs; 563a30f8f8cSSatish Balay InsertMode addv; 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay PetscFunctionBegin; 566a30f8f8cSSatish Balay if (baij->donotstash) { 567a30f8f8cSSatish Balay PetscFunctionReturn(0); 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay 570a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 571a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 572a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 574a30f8f8cSSatish Balay } 575a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 576a30f8f8cSSatish Balay 577a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 578a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 579a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 580a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 581a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 582a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 583a30f8f8cSSatish Balay PetscFunctionReturn(0); 584a30f8f8cSSatish Balay } 585a30f8f8cSSatish Balay 586a30f8f8cSSatish Balay #undef __FUNC__ 587a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyEnd_MPISBAIJ" 588a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 589a30f8f8cSSatish Balay { 590a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 591a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 592a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 593a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 594a30f8f8cSSatish Balay int *row,*col,other_disassembled; 595a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 596a30f8f8cSSatish Balay MatScalar *val; 597a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 598a30f8f8cSSatish Balay int rank; 599a30f8f8cSSatish Balay 600a30f8f8cSSatish Balay PetscFunctionBegin; 601a30f8f8cSSatish Balay /* remove 2 line below later */ 602a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRQ(ierr); 603a30f8f8cSSatish Balay 604a30f8f8cSSatish Balay if (!baij->donotstash) { 605a30f8f8cSSatish Balay while (1) { 606a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 607a30f8f8cSSatish Balay /* 608a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 609a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 610a30f8f8cSSatish Balay */ 611a30f8f8cSSatish Balay if (!flg) break; 612a30f8f8cSSatish Balay 613a30f8f8cSSatish Balay for (i=0; i<n;) { 614a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 615a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 616a30f8f8cSSatish Balay if (j < n) ncols = j-i; 617a30f8f8cSSatish Balay else ncols = n-i; 618a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 619a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 620a30f8f8cSSatish Balay i = j; 621a30f8f8cSSatish Balay } 622a30f8f8cSSatish Balay } 623a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 624a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 625a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 626a30f8f8cSSatish Balay restore the original flags */ 627a30f8f8cSSatish Balay r1 = baij->roworiented; 628a30f8f8cSSatish Balay r2 = a->roworiented; 629a30f8f8cSSatish Balay r3 = b->roworiented; 630a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 631a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 632a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 633a30f8f8cSSatish Balay while (1) { 634a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 635a30f8f8cSSatish Balay if (!flg) break; 636a30f8f8cSSatish Balay 637a30f8f8cSSatish Balay for (i=0; i<n;) { 638a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 639a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 640a30f8f8cSSatish Balay if (j < n) ncols = j-i; 641a30f8f8cSSatish Balay else ncols = n-i; 642a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 643a30f8f8cSSatish Balay i = j; 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 647a30f8f8cSSatish Balay baij->roworiented = r1; 648a30f8f8cSSatish Balay a->roworiented = r2; 649a30f8f8cSSatish Balay b->roworiented = r3; 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 653a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 654a30f8f8cSSatish Balay 655a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 656a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 657a30f8f8cSSatish Balay /* 658a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 659a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 660a30f8f8cSSatish Balay */ 661a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 662a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 663a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 664c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay 668a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 669a30f8f8cSSatish Balay ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 672a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 675a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 676a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 677a30f8f8cSSatish Balay baij->ht_total_ct = 0; 678a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 679a30f8f8cSSatish Balay } 680a30f8f8cSSatish Balay #endif 681a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 682c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 683a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 684a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay 687a30f8f8cSSatish Balay if (baij->rowvalues) { 688a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 689a30f8f8cSSatish Balay baij->rowvalues = 0; 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay PetscFunctionReturn(0); 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay 694a30f8f8cSSatish Balay #undef __FUNC__ 695a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ_ASCIIorDraworSocket" 696a30f8f8cSSatish Balay static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 697a30f8f8cSSatish Balay { 698a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 699a30f8f8cSSatish Balay int ierr,format,bs = baij->bs,size = baij->size,rank = baij->rank; 700a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 70165d70643SHong Zhang Viewer sviewer; 702a30f8f8cSSatish Balay 703a30f8f8cSSatish Balay PetscFunctionBegin; 704a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 705a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 706a30f8f8cSSatish Balay if (isascii) { 707a30f8f8cSSatish Balay ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 708a30f8f8cSSatish Balay if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 709a30f8f8cSSatish Balay MatInfo info; 710a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 711a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 713a30f8f8cSSatish Balay rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 714a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 716a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 719a30f8f8cSSatish Balay ierr = ViewerFlush(viewer);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay PetscFunctionReturn(0); 722a30f8f8cSSatish Balay } else if (format == VIEWER_FORMAT_ASCII_INFO) { 723a30f8f8cSSatish Balay ierr = ViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 724a30f8f8cSSatish Balay PetscFunctionReturn(0); 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay 728a30f8f8cSSatish Balay if (isdraw) { 729a30f8f8cSSatish Balay Draw draw; 730a30f8f8cSSatish Balay PetscTruth isnull; 731a30f8f8cSSatish Balay ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 732a30f8f8cSSatish Balay ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 733a30f8f8cSSatish Balay } 734a30f8f8cSSatish Balay 735a30f8f8cSSatish Balay if (size == 1) { 736a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 737a30f8f8cSSatish Balay } else { 738a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 739a30f8f8cSSatish Balay Mat A; 74065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 742a30f8f8cSSatish Balay int M = baij->M,N = baij->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 743a30f8f8cSSatish Balay MatScalar *a; 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay if (!rank) { 746bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 747a30f8f8cSSatish Balay } else { 748f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 749a30f8f8cSSatish Balay } 750a30f8f8cSSatish Balay PLogObjectParent(mat,A); 751a30f8f8cSSatish Balay 752a30f8f8cSSatish Balay /* copy over the A part */ 75365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 754a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 755a30f8f8cSSatish Balay rvals = (int*)PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 756a30f8f8cSSatish Balay 757a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 758a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 759a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 760a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 761a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 762a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 763a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 764a30f8f8cSSatish Balay col++; a += bs; 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay /* copy over the B part */ 76965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 771a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 772a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 773a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 774a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 775a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 776a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 777a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 778a30f8f8cSSatish Balay col++; a += bs; 779a30f8f8cSSatish Balay } 780a30f8f8cSSatish Balay } 781a30f8f8cSSatish Balay } 782a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 783a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 784a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 785a30f8f8cSSatish Balay /* 786a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 787a30f8f8cSSatish Balay synchronized across all processors that share the Draw object 788a30f8f8cSSatish Balay */ 789a30f8f8cSSatish Balay ierr = ViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79065d70643SHong Zhang if (!rank) { 791a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 792a30f8f8cSSatish Balay } 79365d70643SHong Zhang ierr = ViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 794a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 795a30f8f8cSSatish Balay } 796a30f8f8cSSatish Balay PetscFunctionReturn(0); 797a30f8f8cSSatish Balay } 798a30f8f8cSSatish Balay 799a30f8f8cSSatish Balay #undef __FUNC__ 800a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ" 801a30f8f8cSSatish Balay int MatView_MPISBAIJ(Mat mat,Viewer viewer) 802a30f8f8cSSatish Balay { 803a30f8f8cSSatish Balay int ierr; 804a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 805a30f8f8cSSatish Balay 806a30f8f8cSSatish Balay PetscFunctionBegin; 807a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 808a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 809a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,SOCKET_VIEWER,&issocket);CHKERRQ(ierr); 810a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,BINARY_VIEWER,&isbinary);CHKERRQ(ierr); 811a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 812a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 813a30f8f8cSSatish Balay } else { 81429bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 815a30f8f8cSSatish Balay } 816a30f8f8cSSatish Balay PetscFunctionReturn(0); 817a30f8f8cSSatish Balay } 818a30f8f8cSSatish Balay 819a30f8f8cSSatish Balay #undef __FUNC__ 820a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDestroy_MPISBAIJ" 821a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 822a30f8f8cSSatish Balay { 823a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 824a30f8f8cSSatish Balay int ierr; 825a30f8f8cSSatish Balay 826a30f8f8cSSatish Balay PetscFunctionBegin; 827a30f8f8cSSatish Balay 828a30f8f8cSSatish Balay if (mat->mapping) { 829a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 830a30f8f8cSSatish Balay } 831a30f8f8cSSatish Balay if (mat->bmapping) { 832a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 833a30f8f8cSSatish Balay } 834a30f8f8cSSatish Balay if (mat->rmap) { 835a30f8f8cSSatish Balay ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 836a30f8f8cSSatish Balay } 837a30f8f8cSSatish Balay if (mat->cmap) { 838a30f8f8cSSatish Balay ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 839a30f8f8cSSatish Balay } 840a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 841a30f8f8cSSatish Balay PLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",baij->M,baij->N); 842a30f8f8cSSatish Balay #endif 843a30f8f8cSSatish Balay 844a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 845a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 846a30f8f8cSSatish Balay 847a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 848a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 849a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 850a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 851a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 852a30f8f8cSSatish Balay #else 853a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 854a30f8f8cSSatish Balay #endif 855a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 856a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 857a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 858a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 859a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 860a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 861a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 862a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 863a30f8f8cSSatish Balay #endif 864a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 865a30f8f8cSSatish Balay PLogObjectDestroy(mat); 866a30f8f8cSSatish Balay PetscHeaderDestroy(mat); 867a30f8f8cSSatish Balay PetscFunctionReturn(0); 868a30f8f8cSSatish Balay } 869a30f8f8cSSatish Balay 870a30f8f8cSSatish Balay #undef __FUNC__ 871a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMult_MPISBAIJ" 872a30f8f8cSSatish Balay int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 873a30f8f8cSSatish Balay { 874a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 875a30f8f8cSSatish Balay int ierr,nt; 876a30f8f8cSSatish Balay 877a30f8f8cSSatish Balay PetscFunctionBegin; 878a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 879a30f8f8cSSatish Balay if (nt != a->n) { 88029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 881a30f8f8cSSatish Balay } 882a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 883a30f8f8cSSatish Balay if (nt != a->m) { 88429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 885a30f8f8cSSatish Balay } 88665d70643SHong Zhang 887b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 888b941877fSHong Zhang /* do diagonal part */ 889b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 890b941877fSHong Zhang /* do supperdiagonal part */ 891b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 892b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 893b941877fSHong Zhang /* do subdiagonal part */ 894b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 895b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 896b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 89765d70643SHong Zhang 898a30f8f8cSSatish Balay PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay 901a30f8f8cSSatish Balay #undef __FUNC__ 902a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultAdd_MPISBAIJ" 903a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 904a30f8f8cSSatish Balay { 905de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 906aa482183SHong Zhang int ierr; 907a30f8f8cSSatish Balay 908a30f8f8cSSatish Balay PetscFunctionBegin; 909b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 910b941877fSHong Zhang /* do diagonal part */ 911b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 912b941877fSHong Zhang /* do supperdiagonal part */ 913b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 914de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 915de8b6608SHong Zhang 916b941877fSHong Zhang /* do subdiagonal part */ 917a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 918a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 919a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 920aa482183SHong Zhang 921a30f8f8cSSatish Balay PetscFunctionReturn(0); 922a30f8f8cSSatish Balay } 923a30f8f8cSSatish Balay 924a30f8f8cSSatish Balay #undef __FUNC__ 925a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTranspose_MPISBAIJ" 926a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 927a30f8f8cSSatish Balay { 928a30f8f8cSSatish Balay PetscFunctionBegin; 92929bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 93096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 931a30f8f8cSSatish Balay } 932a30f8f8cSSatish Balay 933a30f8f8cSSatish Balay #undef __FUNC__ 934a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTransposeAdd_MPISBAIJ" 935a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 936a30f8f8cSSatish Balay { 937a30f8f8cSSatish Balay PetscFunctionBegin; 93829bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 93996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 940a30f8f8cSSatish Balay } 941a30f8f8cSSatish Balay 942a30f8f8cSSatish Balay /* 943a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 944a30f8f8cSSatish Balay diagonal block 945a30f8f8cSSatish Balay */ 946a30f8f8cSSatish Balay #undef __FUNC__ 947a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonal_MPISBAIJ" 948a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 949a30f8f8cSSatish Balay { 950a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 951a30f8f8cSSatish Balay int ierr; 952a30f8f8cSSatish Balay 953a30f8f8cSSatish Balay PetscFunctionBegin; 95429bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 955a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 956a30f8f8cSSatish Balay PetscFunctionReturn(0); 957a30f8f8cSSatish Balay } 958a30f8f8cSSatish Balay 959a30f8f8cSSatish Balay #undef __FUNC__ 960a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatScale_MPISBAIJ" 961a30f8f8cSSatish Balay int MatScale_MPISBAIJ(Scalar *aa,Mat A) 962a30f8f8cSSatish Balay { 963a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 964a30f8f8cSSatish Balay int ierr; 965a30f8f8cSSatish Balay 966a30f8f8cSSatish Balay PetscFunctionBegin; 967a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 968a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 969a30f8f8cSSatish Balay PetscFunctionReturn(0); 970a30f8f8cSSatish Balay } 971a30f8f8cSSatish Balay 972a30f8f8cSSatish Balay #undef __FUNC__ 973a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetSize_MPISBAIJ" 974a30f8f8cSSatish Balay int MatGetSize_MPISBAIJ(Mat matin,int *m,int *n) 975a30f8f8cSSatish Balay { 976a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 977a30f8f8cSSatish Balay 978a30f8f8cSSatish Balay PetscFunctionBegin; 979a30f8f8cSSatish Balay if (m) *m = mat->M; 980a30f8f8cSSatish Balay if (n) *n = mat->N; 981a30f8f8cSSatish Balay PetscFunctionReturn(0); 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay 984a30f8f8cSSatish Balay #undef __FUNC__ 985a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetLocalSize_MPISBAIJ" 986a30f8f8cSSatish Balay int MatGetLocalSize_MPISBAIJ(Mat matin,int *m,int *n) 987a30f8f8cSSatish Balay { 988a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 989a30f8f8cSSatish Balay 990a30f8f8cSSatish Balay PetscFunctionBegin; 991a30f8f8cSSatish Balay *m = mat->m; *n = mat->n; 992a30f8f8cSSatish Balay PetscFunctionReturn(0); 993a30f8f8cSSatish Balay } 994a30f8f8cSSatish Balay 995a30f8f8cSSatish Balay #undef __FUNC__ 996a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetOwnershipRange_MPISBAIJ" 997a30f8f8cSSatish Balay int MatGetOwnershipRange_MPISBAIJ(Mat matin,int *m,int *n) 998a30f8f8cSSatish Balay { 999a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1000a30f8f8cSSatish Balay 1001a30f8f8cSSatish Balay PetscFunctionBegin; 1002a30f8f8cSSatish Balay if (m) *m = mat->rstart*mat->bs; 1003a30f8f8cSSatish Balay if (n) *n = mat->rend*mat->bs; 1004a30f8f8cSSatish Balay PetscFunctionReturn(0); 1005a30f8f8cSSatish Balay } 1006a30f8f8cSSatish Balay 1007a30f8f8cSSatish Balay #undef __FUNC__ 1008a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetRow_MPISBAIJ" 1009a30f8f8cSSatish Balay int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1010a30f8f8cSSatish Balay { 1011a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1012a30f8f8cSSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1013a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1014a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1015a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1016a30f8f8cSSatish Balay 1017a30f8f8cSSatish Balay PetscFunctionBegin; 101829bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1019a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1020a30f8f8cSSatish Balay 1021a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1022a30f8f8cSSatish Balay /* 1023a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1024a30f8f8cSSatish Balay */ 1025a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1026a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1027a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1028a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1029a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1030a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1031a30f8f8cSSatish Balay } 1032a30f8f8cSSatish Balay mat->rowvalues = (Scalar*)PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1033a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1034a30f8f8cSSatish Balay } 1035a30f8f8cSSatish Balay 103629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1037a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1038a30f8f8cSSatish Balay 1039a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1040a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1041a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1042a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1043a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1044a30f8f8cSSatish Balay nztot = nzA + nzB; 1045a30f8f8cSSatish Balay 1046a30f8f8cSSatish Balay cmap = mat->garray; 1047a30f8f8cSSatish Balay if (v || idx) { 1048a30f8f8cSSatish Balay if (nztot) { 1049a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1050a30f8f8cSSatish Balay int imark = -1; 1051a30f8f8cSSatish Balay if (v) { 1052a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1053a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1054a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1055a30f8f8cSSatish Balay else break; 1056a30f8f8cSSatish Balay } 1057a30f8f8cSSatish Balay imark = i; 1058a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1059a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1060a30f8f8cSSatish Balay } 1061a30f8f8cSSatish Balay if (idx) { 1062a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1063a30f8f8cSSatish Balay if (imark > -1) { 1064a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1065a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1066a30f8f8cSSatish Balay } 1067a30f8f8cSSatish Balay } else { 1068a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1069a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1070a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1071a30f8f8cSSatish Balay else break; 1072a30f8f8cSSatish Balay } 1073a30f8f8cSSatish Balay imark = i; 1074a30f8f8cSSatish Balay } 1075a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1076a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1077a30f8f8cSSatish Balay } 1078a30f8f8cSSatish Balay } else { 1079a30f8f8cSSatish Balay if (idx) *idx = 0; 1080a30f8f8cSSatish Balay if (v) *v = 0; 1081a30f8f8cSSatish Balay } 1082a30f8f8cSSatish Balay } 1083a30f8f8cSSatish Balay *nz = nztot; 1084a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1085a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1086a30f8f8cSSatish Balay PetscFunctionReturn(0); 1087a30f8f8cSSatish Balay } 1088a30f8f8cSSatish Balay 1089a30f8f8cSSatish Balay #undef __FUNC__ 1090a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatRestoreRow_MPISBAIJ" 1091a30f8f8cSSatish Balay int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1092a30f8f8cSSatish Balay { 1093a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1094a30f8f8cSSatish Balay 1095a30f8f8cSSatish Balay PetscFunctionBegin; 1096a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 109729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1098a30f8f8cSSatish Balay } 1099a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1100a30f8f8cSSatish Balay PetscFunctionReturn(0); 1101a30f8f8cSSatish Balay } 1102a30f8f8cSSatish Balay 1103a30f8f8cSSatish Balay #undef __FUNC__ 1104a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetBlockSize_MPISBAIJ" 1105a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1106a30f8f8cSSatish Balay { 1107a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1108a30f8f8cSSatish Balay 1109a30f8f8cSSatish Balay PetscFunctionBegin; 1110a30f8f8cSSatish Balay *bs = baij->bs; 1111a30f8f8cSSatish Balay PetscFunctionReturn(0); 1112a30f8f8cSSatish Balay } 1113a30f8f8cSSatish Balay 1114a30f8f8cSSatish Balay #undef __FUNC__ 1115a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroEntries_MPISBAIJ" 1116a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1117a30f8f8cSSatish Balay { 1118a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1119a30f8f8cSSatish Balay int ierr; 1120a30f8f8cSSatish Balay 1121a30f8f8cSSatish Balay PetscFunctionBegin; 1122a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1123a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1124a30f8f8cSSatish Balay PetscFunctionReturn(0); 1125a30f8f8cSSatish Balay } 1126a30f8f8cSSatish Balay 1127a30f8f8cSSatish Balay #undef __FUNC__ 1128a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetInfo_MPISBAIJ" 1129a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1130a30f8f8cSSatish Balay { 1131a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1132a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1133a30f8f8cSSatish Balay int ierr; 1134a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1135a30f8f8cSSatish Balay 1136a30f8f8cSSatish Balay PetscFunctionBegin; 1137a30f8f8cSSatish Balay info->block_size = (double)a->bs; 1138a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1140a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1141a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1142a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1143a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1144a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1145a30f8f8cSSatish Balay info->nz_used = isend[0]; 1146a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1147a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1148a30f8f8cSSatish Balay info->memory = isend[3]; 1149a30f8f8cSSatish Balay info->mallocs = isend[4]; 1150a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1151a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 1152a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1153a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1154a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1155a30f8f8cSSatish Balay info->memory = irecv[3]; 1156a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1157a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1158a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 1159a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1160a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1161a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1162a30f8f8cSSatish Balay info->memory = irecv[3]; 1163a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1164a30f8f8cSSatish Balay } else { 116529bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1166a30f8f8cSSatish Balay } 1167a30f8f8cSSatish Balay info->rows_global = (double)a->M; 1168a30f8f8cSSatish Balay info->columns_global = (double)a->N; 1169a30f8f8cSSatish Balay info->rows_local = (double)a->m; 1170a30f8f8cSSatish Balay info->columns_local = (double)a->N; 1171a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1172a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1173a30f8f8cSSatish Balay info->factor_mallocs = 0; 1174a30f8f8cSSatish Balay PetscFunctionReturn(0); 1175a30f8f8cSSatish Balay } 1176a30f8f8cSSatish Balay 1177a30f8f8cSSatish Balay #undef __FUNC__ 1178a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetOption_MPISBAIJ" 1179a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1180a30f8f8cSSatish Balay { 1181a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1182a30f8f8cSSatish Balay int ierr; 1183a30f8f8cSSatish Balay 1184a30f8f8cSSatish Balay PetscFunctionBegin; 1185a30f8f8cSSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 1186a30f8f8cSSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 1187a30f8f8cSSatish Balay op == MAT_COLUMNS_UNSORTED || 1188a30f8f8cSSatish Balay op == MAT_COLUMNS_SORTED || 1189a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 1190a30f8f8cSSatish Balay op == MAT_KEEP_ZEROED_ROWS || 1191a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 1192a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1193a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1194a30f8f8cSSatish Balay } else if (op == MAT_ROW_ORIENTED) { 1195a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1196a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1197a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1198a30f8f8cSSatish Balay } else if (op == MAT_ROWS_SORTED || 1199a30f8f8cSSatish Balay op == MAT_ROWS_UNSORTED || 1200a30f8f8cSSatish Balay op == MAT_SYMMETRIC || 1201a30f8f8cSSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1202a30f8f8cSSatish Balay op == MAT_YES_NEW_DIAGONALS || 1203a30f8f8cSSatish Balay op == MAT_USE_HASH_TABLE) { 1204a30f8f8cSSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1205a30f8f8cSSatish Balay } else if (op == MAT_COLUMN_ORIENTED) { 1206a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1207a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1208a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1209a30f8f8cSSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 1210a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1211a30f8f8cSSatish Balay } else if (op == MAT_NO_NEW_DIAGONALS) { 121229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1213a30f8f8cSSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1214a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1215a30f8f8cSSatish Balay } else { 121629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1217a30f8f8cSSatish Balay } 1218a30f8f8cSSatish Balay PetscFunctionReturn(0); 1219a30f8f8cSSatish Balay } 1220a30f8f8cSSatish Balay 1221a30f8f8cSSatish Balay #undef __FUNC__ 1222a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatTranspose_MPISBAIJ(" 1223a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1224a30f8f8cSSatish Balay { 1225a30f8f8cSSatish Balay PetscFunctionBegin; 122629bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. MatTranspose() should not be called"); 122796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1228a30f8f8cSSatish Balay } 1229a30f8f8cSSatish Balay 1230a30f8f8cSSatish Balay #undef __FUNC__ 1231a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDiagonalScale_MPISBAIJ" 1232a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1233a30f8f8cSSatish Balay { 1234a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1235a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1236a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1237a30f8f8cSSatish Balay 1238a30f8f8cSSatish Balay PetscFunctionBegin; 1239a30f8f8cSSatish Balay if (ll != rr) { 124029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1241a30f8f8cSSatish Balay } 1242a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1243a30f8f8cSSatish Balay if (rr) { 1244a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 124529bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1246a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1247a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1248a30f8f8cSSatish Balay /*} if (ll) { */ 1249a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 125029bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1251a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1252a30f8f8cSSatish Balay /* } */ 1253a30f8f8cSSatish Balay /* scale the diagonal block */ 1254a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1255a30f8f8cSSatish Balay 1256a30f8f8cSSatish Balay /* if (rr) { */ 1257a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1258a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1259a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1260a30f8f8cSSatish Balay } 1261a30f8f8cSSatish Balay 1262a30f8f8cSSatish Balay PetscFunctionReturn(0); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 1265a30f8f8cSSatish Balay #undef __FUNC__ 1266a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroRows_MPISBAIJ" 1267a30f8f8cSSatish Balay int MatZeroRows_MPISBAIJ(Mat A,IS is,Scalar *diag) 1268a30f8f8cSSatish Balay { 1269a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1270a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 1271a30f8f8cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 1272a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1273a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1274a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1275a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1276a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1277a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1278a30f8f8cSSatish Balay IS istmp; 1279a30f8f8cSSatish Balay 1280a30f8f8cSSatish Balay PetscFunctionBegin; 1281a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1282a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1283a30f8f8cSSatish Balay 1284a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 1285a30f8f8cSSatish Balay nprocs = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(nprocs); 1286a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1287a30f8f8cSSatish Balay procs = nprocs + size; 1288a30f8f8cSSatish Balay owner = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 1289a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1290a30f8f8cSSatish Balay idx = rows[i]; 1291a30f8f8cSSatish Balay found = 0; 1292a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1293a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 1294a30f8f8cSSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 1295a30f8f8cSSatish Balay } 1296a30f8f8cSSatish Balay } 129729bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1298a30f8f8cSSatish Balay } 1299a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1300a30f8f8cSSatish Balay 1301a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 1302a30f8f8cSSatish Balay work = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(work); 1303a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1304a30f8f8cSSatish Balay nmax = work[rank]; 1305a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1306a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay 1308a30f8f8cSSatish Balay /* post receives: */ 1309a30f8f8cSSatish Balay rvalues = (int*)PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1310a30f8f8cSSatish Balay recv_waits = (MPI_Request*)PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 1311a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1312a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1313a30f8f8cSSatish Balay } 1314a30f8f8cSSatish Balay 1315a30f8f8cSSatish Balay /* do sends: 1316a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1317a30f8f8cSSatish Balay the ith processor 1318a30f8f8cSSatish Balay */ 1319a30f8f8cSSatish Balay svalues = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(svalues); 1320a30f8f8cSSatish Balay send_waits = (MPI_Request*)PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 1321a30f8f8cSSatish Balay starts = (int*)PetscMalloc((size+1)*sizeof(int));CHKPTRQ(starts); 1322a30f8f8cSSatish Balay starts[0] = 0; 1323a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1324a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1325a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1326a30f8f8cSSatish Balay } 1327a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1328a30f8f8cSSatish Balay 1329a30f8f8cSSatish Balay starts[0] = 0; 1330a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1331a30f8f8cSSatish Balay count = 0; 1332a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1333a30f8f8cSSatish Balay if (procs[i]) { 1334a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1335a30f8f8cSSatish Balay } 1336a30f8f8cSSatish Balay } 1337a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay 1339a30f8f8cSSatish Balay base = owners[rank]*bs; 1340a30f8f8cSSatish Balay 1341a30f8f8cSSatish Balay /* wait on receives */ 1342a30f8f8cSSatish Balay lens = (int*)PetscMalloc(2*(nrecvs+1)*sizeof(int));CHKPTRQ(lens); 1343a30f8f8cSSatish Balay source = lens + nrecvs; 1344a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1345a30f8f8cSSatish Balay while (count) { 1346a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1347a30f8f8cSSatish Balay /* unpack receives into our local space */ 1348a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1349a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1350a30f8f8cSSatish Balay lens[imdex] = n; 1351a30f8f8cSSatish Balay slen += n; 1352a30f8f8cSSatish Balay count--; 1353a30f8f8cSSatish Balay } 1354a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1355a30f8f8cSSatish Balay 1356a30f8f8cSSatish Balay /* move the data into the send scatter */ 1357a30f8f8cSSatish Balay lrows = (int*)PetscMalloc((slen+1)*sizeof(int));CHKPTRQ(lrows); 1358a30f8f8cSSatish Balay count = 0; 1359a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1360a30f8f8cSSatish Balay values = rvalues + i*nmax; 1361a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1362a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay } 1365a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1366a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1367a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1368a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1369a30f8f8cSSatish Balay 1370a30f8f8cSSatish Balay /* actually zap the local rows */ 1371a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1372a30f8f8cSSatish Balay PLogObjectParent(A,istmp); 1373a30f8f8cSSatish Balay 1374a30f8f8cSSatish Balay /* 1375a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1376a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1377a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1378a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1379a30f8f8cSSatish Balay 1380a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1381a30f8f8cSSatish Balay */ 1382a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1383ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1384a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1385a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1386a30f8f8cSSatish Balay } else if (diag) { 1387a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1388a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 138929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1390a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1391a30f8f8cSSatish Balay } 1392a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1393a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1394a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay } 1396a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1397a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay } else { 1399a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1400a30f8f8cSSatish Balay } 1401a30f8f8cSSatish Balay 1402a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1403a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1404a30f8f8cSSatish Balay 1405a30f8f8cSSatish Balay /* wait on sends */ 1406a30f8f8cSSatish Balay if (nsends) { 1407a30f8f8cSSatish Balay send_status = (MPI_Status*)PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1408a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1409a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1410a30f8f8cSSatish Balay } 1411a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1412a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1413a30f8f8cSSatish Balay 1414a30f8f8cSSatish Balay PetscFunctionReturn(0); 1415a30f8f8cSSatish Balay } 1416a30f8f8cSSatish Balay 1417a30f8f8cSSatish Balay #undef __FUNC__ 1418a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatPrintHelp_MPISBAIJ" 1419a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1420a30f8f8cSSatish Balay { 1421a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1422a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1423a30f8f8cSSatish Balay static int called = 0; 1424a30f8f8cSSatish Balay int ierr; 1425a30f8f8cSSatish Balay 1426a30f8f8cSSatish Balay PetscFunctionBegin; 1427a30f8f8cSSatish Balay if (!a->rank) { 1428a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1429a30f8f8cSSatish Balay } 1430a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1431a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1432a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1433a30f8f8cSSatish Balay PetscFunctionReturn(0); 1434a30f8f8cSSatish Balay } 1435a30f8f8cSSatish Balay 1436a30f8f8cSSatish Balay #undef __FUNC__ 1437a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetUnfactored_MPISBAIJ" 1438a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1439a30f8f8cSSatish Balay { 1440f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1441a30f8f8cSSatish Balay int ierr; 1442a30f8f8cSSatish Balay 1443a30f8f8cSSatish Balay PetscFunctionBegin; 1444a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1445a30f8f8cSSatish Balay PetscFunctionReturn(0); 1446a30f8f8cSSatish Balay } 1447a30f8f8cSSatish Balay 1448a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1449a30f8f8cSSatish Balay 1450a30f8f8cSSatish Balay #undef __FUNC__ 1451a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatEqual_MPISBAIJ" 1452a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1453a30f8f8cSSatish Balay { 1454a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1455a30f8f8cSSatish Balay Mat a,b,c,d; 1456a30f8f8cSSatish Balay PetscTruth flg; 1457a30f8f8cSSatish Balay int ierr; 1458a30f8f8cSSatish Balay 1459a30f8f8cSSatish Balay PetscFunctionBegin; 146029bbc08cSBarry Smith if (B->type != MATMPISBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1461a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1462a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1463a30f8f8cSSatish Balay 1464a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1465a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1466a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1467a30f8f8cSSatish Balay } 1468a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1469a30f8f8cSSatish Balay PetscFunctionReturn(0); 1470a30f8f8cSSatish Balay } 1471a30f8f8cSSatish Balay 1472a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1473a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1474a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1475a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1476a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1477a30f8f8cSSatish Balay MatMult_MPISBAIJ, 1478a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1479a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1480a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1489a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1490a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1491a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1492a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1493a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1494a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1495a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1498a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1499a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay MatGetSize_MPISBAIJ, 1505a30f8f8cSSatish Balay MatGetLocalSize_MPISBAIJ, 1506a30f8f8cSSatish Balay MatGetOwnershipRange_MPISBAIJ, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1518a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1519a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1522a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1527a30f8f8cSSatish Balay 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 1538a30f8f8cSSatish Balay 0, 153924d5174aSHong Zhang MatGetMaps_Petsc, 154024d5174aSHong Zhang 0, 154124d5174aSHong Zhang 0, 154224d5174aSHong Zhang 0, 154324d5174aSHong Zhang 0, 154424d5174aSHong Zhang 0, 154524d5174aSHong Zhang 0, 154624d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1547a30f8f8cSSatish Balay 1548a30f8f8cSSatish Balay 1549a30f8f8cSSatish Balay EXTERN_C_BEGIN 1550a30f8f8cSSatish Balay #undef __FUNC__ 1551a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonalBlock_MPISBAIJ" 1552a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1553a30f8f8cSSatish Balay { 1554a30f8f8cSSatish Balay PetscFunctionBegin; 1555a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1556a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1557a30f8f8cSSatish Balay PetscFunctionReturn(0); 1558a30f8f8cSSatish Balay } 1559a30f8f8cSSatish Balay EXTERN_C_END 1560a30f8f8cSSatish Balay 1561a30f8f8cSSatish Balay #undef __FUNC__ 1562a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateMPISBAIJ" 1563a30f8f8cSSatish Balay /*@C 1564a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1565a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1566a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1567a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1568a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1569a30f8f8cSSatish Balay 1570a30f8f8cSSatish Balay Collective on MPI_Comm 1571a30f8f8cSSatish Balay 1572a30f8f8cSSatish Balay Input Parameters: 1573a30f8f8cSSatish Balay + comm - MPI communicator 1574a30f8f8cSSatish Balay . bs - size of blockk 1575a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1576a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1577a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1578a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1579a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1580a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1581a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1582a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1583a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1584a30f8f8cSSatish Balay submatrix (same for all local rows) 1585a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1586a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1587a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1588a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1589a30f8f8cSSatish Balay submatrix (same for all local rows). 1590a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1591a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1592a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1593a30f8f8cSSatish Balay 1594a30f8f8cSSatish Balay Output Parameter: 1595a30f8f8cSSatish Balay . A - the matrix 1596a30f8f8cSSatish Balay 1597a30f8f8cSSatish Balay Options Database Keys: 1598a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1599a30f8f8cSSatish Balay block calculations (much slower) 1600a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1601a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1602a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1603a30f8f8cSSatish Balay 1604a30f8f8cSSatish Balay Notes: 1605a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1606a30f8f8cSSatish Balay (possibly both). 1607a30f8f8cSSatish Balay 1608a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1609a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1610a30f8f8cSSatish Balay 1611a30f8f8cSSatish Balay Storage Information: 1612a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1613a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1614a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1615a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1616a30f8f8cSSatish Balay 1617a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1618a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1619a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1620a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1621a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1622a30f8f8cSSatish Balay 1623a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1624a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1625a30f8f8cSSatish Balay 1626a30f8f8cSSatish Balay .vb 1627a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1628a30f8f8cSSatish Balay ------------------- 1629a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1630a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1631a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1632a30f8f8cSSatish Balay ------------------- 1633a30f8f8cSSatish Balay .ve 1634a30f8f8cSSatish Balay 1635a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1636a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1637a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1638a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1639a30f8f8cSSatish Balay 1640a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1641a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1642a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1643a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1644a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1645a30f8f8cSSatish Balay matrices. 1646a30f8f8cSSatish Balay 1647a30f8f8cSSatish Balay Level: intermediate 1648a30f8f8cSSatish Balay 1649a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1650a30f8f8cSSatish Balay 1651a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1652a30f8f8cSSatish Balay @*/ 1653a30f8f8cSSatish Balay 1654a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1655a30f8f8cSSatish Balay { 1656a30f8f8cSSatish Balay Mat B; 1657a30f8f8cSSatish Balay Mat_MPISBAIJ *b; 1658f65c83cfSHong Zhang int ierr,i,sum[1],work[1],mbs,Mbs=PETSC_DECIDE,size; 1659a30f8f8cSSatish Balay PetscTruth flag1,flag2,flg; 1660a30f8f8cSSatish Balay 1661a30f8f8cSSatish Balay PetscFunctionBegin; 1662a30f8f8cSSatish Balay if (M != N || m != n){ /* N and n are not used after this */ 166329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, set M=N and m=n"); 1664a30f8f8cSSatish Balay } 1665a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1666a30f8f8cSSatish Balay 166729bbc08cSBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 166829bbc08cSBarry Smith if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than -2: value %d",d_nz); 166929bbc08cSBarry Smith if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than -2: value %d",o_nz); 1670a30f8f8cSSatish Balay if (d_nnz) { 1671a30f8f8cSSatish Balay for (i=0; i<m/bs; i++) { 167229bbc08cSBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1673a30f8f8cSSatish Balay } 1674a30f8f8cSSatish Balay } 1675a30f8f8cSSatish Balay if (o_nnz) { 1676a30f8f8cSSatish Balay for (i=0; i<m/bs; i++) { 167729bbc08cSBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1678a30f8f8cSSatish Balay } 1679a30f8f8cSSatish Balay } 1680a30f8f8cSSatish Balay 1681a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1682a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_mpisbaij",&flag1);CHKERRQ(ierr); 1683a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr); 1684a30f8f8cSSatish Balay if (!flag1 && !flag2 && size == 1) { 1685a30f8f8cSSatish Balay if (M == PETSC_DECIDE) M = m; 1686a30f8f8cSSatish Balay ierr = MatCreateSeqSBAIJ(comm,bs,M,M,d_nz,d_nnz,A);CHKERRQ(ierr); 1687a30f8f8cSSatish Balay PetscFunctionReturn(0); 1688a30f8f8cSSatish Balay } 1689a30f8f8cSSatish Balay 1690a30f8f8cSSatish Balay *A = 0; 1691a30f8f8cSSatish Balay PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPISBAIJ,"Mat",comm,MatDestroy,MatView); 1692a30f8f8cSSatish Balay PLogObjectCreate(B); 1693a30f8f8cSSatish Balay B->data = (void*)(b = PetscNew(Mat_MPISBAIJ));CHKPTRQ(b); 1694a30f8f8cSSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1695a30f8f8cSSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1696a30f8f8cSSatish Balay 1697a30f8f8cSSatish Balay B->ops->destroy = MatDestroy_MPISBAIJ; 1698a30f8f8cSSatish Balay B->ops->view = MatView_MPISBAIJ; 1699a30f8f8cSSatish Balay B->mapping = 0; 1700a30f8f8cSSatish Balay B->factor = 0; 1701a30f8f8cSSatish Balay B->assembled = PETSC_FALSE; 1702a30f8f8cSSatish Balay 1703a30f8f8cSSatish Balay B->insertmode = NOT_SET_VALUES; 1704a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr); 1705a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr); 1706a30f8f8cSSatish Balay 1707a30f8f8cSSatish Balay if (m == PETSC_DECIDE && (d_nnz || o_nnz)) { 170829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1709a30f8f8cSSatish Balay } 1710a30f8f8cSSatish Balay if (M == PETSC_DECIDE && m == PETSC_DECIDE) { 171129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"either M or m should be specified"); 1712a30f8f8cSSatish Balay } 1713a30f8f8cSSatish Balay if (M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1714a30f8f8cSSatish Balay 1715a30f8f8cSSatish Balay if (M == PETSC_DECIDE) { 1716a30f8f8cSSatish Balay work[0] = m; mbs = m/bs; 1717a30f8f8cSSatish Balay ierr = MPI_Allreduce(work,sum,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 1718a30f8f8cSSatish Balay M = sum[0]; Mbs = M/bs; 1719a30f8f8cSSatish Balay } else { /* M is specified */ 1720a30f8f8cSSatish Balay Mbs = M/bs; 172129bbc08cSBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,"No of global rows must be divisible by blocksize"); 1722a30f8f8cSSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 1723a30f8f8cSSatish Balay m = mbs*bs; 1724a30f8f8cSSatish Balay } 1725a30f8f8cSSatish Balay 1726a30f8f8cSSatish Balay if (mbs*bs != m) { 172729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"No of local rows/cols must be divisible by blocksize"); 1728a30f8f8cSSatish Balay } 1729a30f8f8cSSatish Balay 1730a30f8f8cSSatish Balay b->m = m; B->m = m; 1731a30f8f8cSSatish Balay b->n = m; B->n = m; 1732a30f8f8cSSatish Balay b->N = M; B->N = M; 1733a30f8f8cSSatish Balay b->M = M; 1734a30f8f8cSSatish Balay B->M = M; 1735a30f8f8cSSatish Balay b->bs = bs; 1736a30f8f8cSSatish Balay b->bs2 = bs*bs; 1737a30f8f8cSSatish Balay b->mbs = mbs; 1738a30f8f8cSSatish Balay b->nbs = mbs; 1739a30f8f8cSSatish Balay b->Mbs = Mbs; 1740a30f8f8cSSatish Balay b->Nbs = Mbs; 1741a30f8f8cSSatish Balay 1742a30f8f8cSSatish Balay /* the information in the maps duplicates the information computed below, eventually 1743a30f8f8cSSatish Balay we should remove the duplicate information that is not contained in the maps */ 1744a30f8f8cSSatish Balay ierr = MapCreateMPI(B->comm,m,M,&B->rmap);CHKERRQ(ierr); 1745a30f8f8cSSatish Balay ierr = MapCreateMPI(B->comm,m,M,&B->cmap);CHKERRQ(ierr); 1746a30f8f8cSSatish Balay 1747a30f8f8cSSatish Balay /* build local table of row and column ownerships */ 1748a30f8f8cSSatish Balay b->rowners = (int*)PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 1749a30f8f8cSSatish Balay PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1750a30f8f8cSSatish Balay b->cowners = b->rowners + b->size + 2; 1751a30f8f8cSSatish Balay b->rowners_bs = b->cowners + b->size + 2; 1752a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1753a30f8f8cSSatish Balay b->rowners[0] = 0; 1754a30f8f8cSSatish Balay for (i=2; i<=b->size; i++) { 1755a30f8f8cSSatish Balay b->rowners[i] += b->rowners[i-1]; 1756a30f8f8cSSatish Balay } 1757a30f8f8cSSatish Balay for (i=0; i<=b->size; i++) { 1758a30f8f8cSSatish Balay b->rowners_bs[i] = b->rowners[i]*bs; 1759a30f8f8cSSatish Balay } 1760a30f8f8cSSatish Balay b->rstart = b->rowners[b->rank]; 1761a30f8f8cSSatish Balay b->rend = b->rowners[b->rank+1]; 1762a30f8f8cSSatish Balay b->rstart_bs = b->rstart * bs; 1763a30f8f8cSSatish Balay b->rend_bs = b->rend * bs; 1764a30f8f8cSSatish Balay 1765a30f8f8cSSatish Balay b->cstart = b->rstart; 1766a30f8f8cSSatish Balay b->cend = b->rend; 1767a30f8f8cSSatish Balay b->cstart_bs = b->cstart * bs; 1768a30f8f8cSSatish Balay b->cend_bs = b->cend * bs; 1769a30f8f8cSSatish Balay 1770a30f8f8cSSatish Balay 1771a30f8f8cSSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 1772a30f8f8cSSatish Balay ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,m,m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1773a30f8f8cSSatish Balay PLogObjectParent(B,b->A); 1774a30f8f8cSSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 1775a30f8f8cSSatish Balay ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1776a30f8f8cSSatish Balay PLogObjectParent(B,b->B); 1777a30f8f8cSSatish Balay 1778a30f8f8cSSatish Balay /* build cache for off array entries formed */ 1779a30f8f8cSSatish Balay ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1780a30f8f8cSSatish Balay ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1781a30f8f8cSSatish Balay b->donotstash = PETSC_FALSE; 1782a30f8f8cSSatish Balay b->colmap = PETSC_NULL; 1783a30f8f8cSSatish Balay b->garray = PETSC_NULL; 1784a30f8f8cSSatish Balay b->roworiented = PETSC_TRUE; 1785a30f8f8cSSatish Balay 1786a30f8f8cSSatish Balay #if defined(PEYSC_USE_MAT_SINGLE) 1787a30f8f8cSSatish Balay /* stuff for MatSetValues_XXX in single precision */ 1788a30f8f8cSSatish Balay b->lensetvalues = 0; 1789a30f8f8cSSatish Balay b->setvaluescopy = PETSC_NULL; 1790a30f8f8cSSatish Balay #endif 1791a30f8f8cSSatish Balay 1792a30f8f8cSSatish Balay /* stuff used in block assembly */ 1793a30f8f8cSSatish Balay b->barray = 0; 1794a30f8f8cSSatish Balay 1795a30f8f8cSSatish Balay /* stuff used for matrix vector multiply */ 1796a30f8f8cSSatish Balay b->lvec = 0; 1797a30f8f8cSSatish Balay b->Mvctx = 0; 1798a30f8f8cSSatish Balay 1799a30f8f8cSSatish Balay /* stuff for MatGetRow() */ 1800a30f8f8cSSatish Balay b->rowindices = 0; 1801a30f8f8cSSatish Balay b->rowvalues = 0; 1802a30f8f8cSSatish Balay b->getrowactive = PETSC_FALSE; 1803a30f8f8cSSatish Balay 1804a30f8f8cSSatish Balay /* hash table stuff */ 1805a30f8f8cSSatish Balay b->ht = 0; 1806a30f8f8cSSatish Balay b->hd = 0; 1807a30f8f8cSSatish Balay b->ht_size = 0; 1808a30f8f8cSSatish Balay b->ht_flag = PETSC_FALSE; 1809a30f8f8cSSatish Balay b->ht_fact = 0; 1810a30f8f8cSSatish Balay b->ht_total_ct = 0; 1811a30f8f8cSSatish Balay b->ht_insert_ct = 0; 1812a30f8f8cSSatish Balay 1813a30f8f8cSSatish Balay *A = B; 1814a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1815a30f8f8cSSatish Balay if (flg) { 1816a30f8f8cSSatish Balay double fact = 1.39; 1817a30f8f8cSSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1818a30f8f8cSSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1819a30f8f8cSSatish Balay if (fact <= 1.0) fact = 1.39; 1820a30f8f8cSSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1821a30f8f8cSSatish Balay PLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1822a30f8f8cSSatish Balay } 1823a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1824a30f8f8cSSatish Balay "MatStoreValues_MPISBAIJ", 1825a30f8f8cSSatish Balay MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1826a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1827a30f8f8cSSatish Balay "MatRetrieveValues_MPISBAIJ", 1828a30f8f8cSSatish Balay MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1829a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1830a30f8f8cSSatish Balay "MatGetDiagonalBlock_MPISBAIJ", 1831a30f8f8cSSatish Balay MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1832a30f8f8cSSatish Balay PetscFunctionReturn(0); 1833a30f8f8cSSatish Balay } 1834a30f8f8cSSatish Balay 1835a30f8f8cSSatish Balay 1836a30f8f8cSSatish Balay #undef __FUNC__ 1837a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDuplicate_MPISBAIJ" 1838a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1839a30f8f8cSSatish Balay { 1840a30f8f8cSSatish Balay Mat mat; 1841a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1842a30f8f8cSSatish Balay int ierr,len=0; 1843a30f8f8cSSatish Balay PetscTruth flg; 1844a30f8f8cSSatish Balay 1845a30f8f8cSSatish Balay PetscFunctionBegin; 1846a30f8f8cSSatish Balay *newmat = 0; 1847a30f8f8cSSatish Balay PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPISBAIJ,"Mat",matin->comm,MatDestroy,MatView); 1848a30f8f8cSSatish Balay PLogObjectCreate(mat); 1849a30f8f8cSSatish Balay mat->data = (void*)(a = PetscNew(Mat_MPISBAIJ));CHKPTRQ(a); 1850a30f8f8cSSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1851a30f8f8cSSatish Balay mat->ops->destroy = MatDestroy_MPISBAIJ; 1852a30f8f8cSSatish Balay mat->ops->view = MatView_MPISBAIJ; 1853a30f8f8cSSatish Balay mat->factor = matin->factor; 1854a30f8f8cSSatish Balay mat->assembled = PETSC_TRUE; 1855a30f8f8cSSatish Balay mat->insertmode = NOT_SET_VALUES; 1856a30f8f8cSSatish Balay 1857a30f8f8cSSatish Balay a->m = mat->m = oldmat->m; 1858a30f8f8cSSatish Balay a->n = mat->n = oldmat->n; 1859a30f8f8cSSatish Balay a->M = mat->M = oldmat->M; 1860a30f8f8cSSatish Balay a->N = mat->N = oldmat->N; 1861a30f8f8cSSatish Balay 1862a30f8f8cSSatish Balay a->bs = oldmat->bs; 1863a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1864a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1865a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1866a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1867a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1868a30f8f8cSSatish Balay 1869a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1870a30f8f8cSSatish Balay a->rend = oldmat->rend; 1871a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1872a30f8f8cSSatish Balay a->cend = oldmat->cend; 1873a30f8f8cSSatish Balay a->size = oldmat->size; 1874a30f8f8cSSatish Balay a->rank = oldmat->rank; 1875a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1876a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1877a30f8f8cSSatish Balay a->rowindices = 0; 1878a30f8f8cSSatish Balay a->rowvalues = 0; 1879a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1880a30f8f8cSSatish Balay a->barray = 0; 1881a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1882a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1883a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1884a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1885a30f8f8cSSatish Balay 1886a30f8f8cSSatish Balay /* hash table stuff */ 1887a30f8f8cSSatish Balay a->ht = 0; 1888a30f8f8cSSatish Balay a->hd = 0; 1889a30f8f8cSSatish Balay a->ht_size = 0; 1890a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1891a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1892a30f8f8cSSatish Balay a->ht_total_ct = 0; 1893a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1894a30f8f8cSSatish Balay 1895a30f8f8cSSatish Balay 1896a30f8f8cSSatish Balay a->rowners = (int*)PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 1897a30f8f8cSSatish Balay PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1898a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1899a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1900a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1901a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1902a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1903a30f8f8cSSatish Balay if (oldmat->colmap) { 1904a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1905a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1906a30f8f8cSSatish Balay #else 1907a30f8f8cSSatish Balay a->colmap = (int*)PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 1908a30f8f8cSSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1909a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1910a30f8f8cSSatish Balay #endif 1911a30f8f8cSSatish Balay } else a->colmap = 0; 1912a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 1913a30f8f8cSSatish Balay a->garray = (int*)PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 1914a30f8f8cSSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 1915a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1916a30f8f8cSSatish Balay } else a->garray = 0; 1917a30f8f8cSSatish Balay 1918a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1919a30f8f8cSSatish Balay PLogObjectParent(mat,a->lvec); 1920a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1921a30f8f8cSSatish Balay 1922a30f8f8cSSatish Balay PLogObjectParent(mat,a->Mvctx); 1923a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1924a30f8f8cSSatish Balay PLogObjectParent(mat,a->A); 1925a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1926a30f8f8cSSatish Balay PLogObjectParent(mat,a->B); 1927a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr); 1928a30f8f8cSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1929a30f8f8cSSatish Balay if (flg) { 1930a30f8f8cSSatish Balay ierr = MatPrintHelp(mat);CHKERRQ(ierr); 1931a30f8f8cSSatish Balay } 1932a30f8f8cSSatish Balay *newmat = mat; 1933a30f8f8cSSatish Balay PetscFunctionReturn(0); 1934a30f8f8cSSatish Balay } 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay #include "petscsys.h" 1937a30f8f8cSSatish Balay 1938a30f8f8cSSatish Balay #undef __FUNC__ 1939a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatLoad_MPISBAIJ" 1940a30f8f8cSSatish Balay int MatLoad_MPISBAIJ(Viewer viewer,MatType type,Mat *newmat) 1941a30f8f8cSSatish Balay { 1942a30f8f8cSSatish Balay Mat A; 1943a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 1944a30f8f8cSSatish Balay Scalar *vals,*buf; 1945a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1946a30f8f8cSSatish Balay MPI_Status status; 1947a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1948a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 1949a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 1950a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 1951a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 1952a30f8f8cSSatish Balay 1953a30f8f8cSSatish Balay PetscFunctionBegin; 1954a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1955a30f8f8cSSatish Balay 1956a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1957a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1958a30f8f8cSSatish Balay if (!rank) { 1959a30f8f8cSSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1960a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 196129bbc08cSBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 1962a30f8f8cSSatish Balay if (header[3] < 0) { 196329bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 1964a30f8f8cSSatish Balay } 1965a30f8f8cSSatish Balay } 1966a30f8f8cSSatish Balay 1967a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 1968a30f8f8cSSatish Balay M = header[1]; N = header[2]; 1969a30f8f8cSSatish Balay 197029bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 1971a30f8f8cSSatish Balay 1972a30f8f8cSSatish Balay /* 1973a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 1974a30f8f8cSSatish Balay divisible by the blocksize 1975a30f8f8cSSatish Balay */ 1976a30f8f8cSSatish Balay Mbs = M/bs; 1977a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 1978a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 1979a30f8f8cSSatish Balay else Mbs++; 1980a30f8f8cSSatish Balay if (extra_rows &&!rank) { 1981a30f8f8cSSatish Balay PLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 1982a30f8f8cSSatish Balay } 1983a30f8f8cSSatish Balay 1984a30f8f8cSSatish Balay /* determine ownership of all rows */ 1985a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 1986a30f8f8cSSatish Balay m = mbs * bs; 1987a30f8f8cSSatish Balay rowners = (int*)PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 1988a30f8f8cSSatish Balay browners = rowners + size + 1; 1989a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1990a30f8f8cSSatish Balay rowners[0] = 0; 1991a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 1992a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 1993a30f8f8cSSatish Balay rstart = rowners[rank]; 1994a30f8f8cSSatish Balay rend = rowners[rank+1]; 1995a30f8f8cSSatish Balay 1996a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 1997a30f8f8cSSatish Balay locrowlens = (int*)PetscMalloc((rend-rstart)*bs*sizeof(int));CHKPTRQ(locrowlens); 1998a30f8f8cSSatish Balay if (!rank) { 1999a30f8f8cSSatish Balay rowlengths = (int*)PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths); 2000a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2001a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2002a30f8f8cSSatish Balay sndcounts = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(sndcounts); 2003a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2004a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2005a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2006a30f8f8cSSatish Balay } else { 2007a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2008a30f8f8cSSatish Balay } 2009a30f8f8cSSatish Balay 20100222edb1SHong Zhang if (!rank) { /* procs[0] */ 2011a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 2012a30f8f8cSSatish Balay procsnz = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(procsnz); 2013a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2014a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2015a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2016a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2017a30f8f8cSSatish Balay } 2018a30f8f8cSSatish Balay } 2019a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2022a30f8f8cSSatish Balay maxnz = 0; 2023a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2024a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2025a30f8f8cSSatish Balay } 2026a30f8f8cSSatish Balay cols = (int*)PetscMalloc(maxnz*sizeof(int));CHKPTRQ(cols); 2027a30f8f8cSSatish Balay 2028a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2029a30f8f8cSSatish Balay nz = procsnz[0]; 2030a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2031a30f8f8cSSatish Balay mycols = ibuf; 2032a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2033a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2034a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2035a30f8f8cSSatish Balay 2036a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2037a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2038a30f8f8cSSatish Balay nz = procsnz[i]; 2039a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2040a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2041a30f8f8cSSatish Balay } 2042a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2043a30f8f8cSSatish Balay if (size != 1) { 2044a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2045a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2046a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2047a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2048a30f8f8cSSatish Balay } 2049a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20500222edb1SHong Zhang } else { /* procs[i], i>0 */ 2051a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2052a30f8f8cSSatish Balay nz = 0; 2053a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2054a30f8f8cSSatish Balay nz += locrowlens[i]; 2055a30f8f8cSSatish Balay } 2056a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2057a30f8f8cSSatish Balay mycols = ibuf; 2058a30f8f8cSSatish Balay /* receive message of column indices*/ 2059a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2060a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 206129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2062a30f8f8cSSatish Balay } 2063a30f8f8cSSatish Balay 2064a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2065a30f8f8cSSatish Balay dlens = (int*)PetscMalloc(2*(rend-rstart+1)*sizeof(int));CHKPTRQ(dlens); 2066a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 2067a30f8f8cSSatish Balay mask = (int*)PetscMalloc(3*Mbs*sizeof(int));CHKPTRQ(mask); 2068a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2069a30f8f8cSSatish Balay masked1 = mask + Mbs; 2070a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2071a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2072a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2073a30f8f8cSSatish Balay dcount = 0; 2074a30f8f8cSSatish Balay odcount = 0; 2075a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2076a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2077a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 20780222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2079a30f8f8cSSatish Balay if (!mask[tmp]) { 2080a30f8f8cSSatish Balay mask[tmp] = 1; 20810222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 20820222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2083a30f8f8cSSatish Balay } 2084a30f8f8cSSatish Balay } 2085a30f8f8cSSatish Balay rowcount++; 2086a30f8f8cSSatish Balay } 2087a30f8f8cSSatish Balay 20880222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 20890222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2090a30f8f8cSSatish Balay 2091a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2092a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2093a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2094a30f8f8cSSatish Balay } 2095a30f8f8cSSatish Balay 2096a30f8f8cSSatish Balay /* create our matrix */ 20977e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2098bfe19f1aSHong Zhang CHKERRQ(ierr); 2099a30f8f8cSSatish Balay A = *newmat; 2100a30f8f8cSSatish Balay MatSetOption(A,MAT_COLUMNS_SORTED); 2101a30f8f8cSSatish Balay 2102a30f8f8cSSatish Balay if (!rank) { 2103a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(maxnz*sizeof(Scalar));CHKPTRQ(buf); 2104a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2105a30f8f8cSSatish Balay nz = procsnz[0]; 2106a30f8f8cSSatish Balay vals = buf; 2107a30f8f8cSSatish Balay mycols = ibuf; 2108a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2109a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2110a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2111a30f8f8cSSatish Balay 2112a30f8f8cSSatish Balay /* insert into matrix */ 2113a30f8f8cSSatish Balay jj = rstart*bs; 2114a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21157e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2116a30f8f8cSSatish Balay mycols += locrowlens[i]; 2117a30f8f8cSSatish Balay vals += locrowlens[i]; 2118a30f8f8cSSatish Balay jj++; 2119a30f8f8cSSatish Balay } 21207e06b45fSHong Zhang 2121a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2122a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2123a30f8f8cSSatish Balay nz = procsnz[i]; 2124a30f8f8cSSatish Balay vals = buf; 2125a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2126a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay } 2128a30f8f8cSSatish Balay /* the last proc */ 2129a30f8f8cSSatish Balay if (size != 1){ 2130a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2131a30f8f8cSSatish Balay vals = buf; 2132a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2133a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2134a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2135a30f8f8cSSatish Balay } 2136a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21377e06b45fSHong Zhang 2138a30f8f8cSSatish Balay } else { 2139a30f8f8cSSatish Balay /* receive numeric values */ 2140a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(nz*sizeof(Scalar));CHKPTRQ(buf); 2141a30f8f8cSSatish Balay 2142a30f8f8cSSatish Balay /* receive message of values*/ 2143a30f8f8cSSatish Balay vals = buf; 2144a30f8f8cSSatish Balay mycols = ibuf; 2145a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 214729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2148a30f8f8cSSatish Balay 2149a30f8f8cSSatish Balay /* insert into matrix */ 2150a30f8f8cSSatish Balay jj = rstart*bs; 2151a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2152a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay mycols += locrowlens[i]; 2154a30f8f8cSSatish Balay vals += locrowlens[i]; 2155a30f8f8cSSatish Balay jj++; 2156a30f8f8cSSatish Balay } 2157a30f8f8cSSatish Balay } 21587e06b45fSHong Zhang 2159a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2162a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2165a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay PetscFunctionReturn(0); 2168a30f8f8cSSatish Balay } 2169a30f8f8cSSatish Balay 2170a30f8f8cSSatish Balay #undef __FUNC__ 2171a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMPISBAIJSetHashTableFactor" 2172a30f8f8cSSatish Balay /*@ 2173a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2174a30f8f8cSSatish Balay 2175a30f8f8cSSatish Balay Input Parameters: 2176a30f8f8cSSatish Balay . mat - the matrix 2177a30f8f8cSSatish Balay . fact - factor 2178a30f8f8cSSatish Balay 2179a30f8f8cSSatish Balay Collective on Mat 2180a30f8f8cSSatish Balay 2181a30f8f8cSSatish Balay Level: advanced 2182a30f8f8cSSatish Balay 2183a30f8f8cSSatish Balay Notes: 2184a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2185a30f8f8cSSatish Balay 2186a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2187a30f8f8cSSatish Balay 2188a30f8f8cSSatish Balay .seealso: MatSetOption() 2189a30f8f8cSSatish Balay @*/ 2190a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2191a30f8f8cSSatish Balay { 2192a30f8f8cSSatish Balay PetscFunctionBegin; 219329bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 219496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2195a30f8f8cSSatish Balay } 219624d5174aSHong Zhang 219724d5174aSHong Zhang #undef __FUNC__ 2198*d0566740SHong Zhang #define __FUNC__ /*<a name=""></a>*/"MatGetRowMax_MPISBAIJ" 219924d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 220024d5174aSHong Zhang { 220124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 220224d5174aSHong Zhang int ierr; 220324d5174aSHong Zhang 220424d5174aSHong Zhang PetscFunctionBegin; 220524d5174aSHong Zhang /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 220624d5174aSHong Zhang ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 2207*d0566740SHong Zhang /* printf("GetRowMax is called\n"); */ 220824d5174aSHong Zhang PetscFunctionReturn(0); 220924d5174aSHong Zhang } 2210