xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision d0609ced746bc51b019815ca91d747429db24893)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*);
12d24d4204SJose E. Roman #endif
13b147fbf3SStefano Zampini 
14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
16b147fbf3SStefano Zampini {
17b147fbf3SStefano Zampini   Mat            preallocator;
18b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
19b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
20b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
21b147fbf3SStefano Zampini 
22b147fbf3SStefano Zampini   PetscFunctionBegin;
23b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
24b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
25b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
26b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
279566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap,X[i]->rmap,&cong));
285f80ce2aSJacob Faibussowitsch     PetscCheck(cong,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
29b147fbf3SStefano Zampini   }
30b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
319566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B,&bs));
329566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B,&M,&N));
339566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B,&m,&n));
349566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B),&preallocator));
359566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator,MATPREALLOCATOR));
369566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator,bs));
379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator,m,n,M,N));
389566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
399566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator,&rstart,&rend));
40b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
41b147fbf3SStefano Zampini     PetscInt          ncols;
42b147fbf3SStefano Zampini     const PetscInt    *row;
43b147fbf3SStefano Zampini     const PetscScalar *vals;
44b147fbf3SStefano Zampini 
45b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
469566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i],r,&ncols,&row,&vals));
479566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES));
48b147fbf3SStefano Zampini       if (symm && symm[i]) {
499566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES));
50b147fbf3SStefano Zampini       }
519566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i],r,&ncols,&row,&vals));
52b147fbf3SStefano Zampini     }
53b147fbf3SStefano Zampini   }
549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY));
559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY));
569566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator,fill,B));
579566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
58b147fbf3SStefano Zampini   PetscFunctionReturn(0);
59b147fbf3SStefano Zampini }
60b147fbf3SStefano Zampini 
6128d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
62b147fbf3SStefano Zampini {
63b147fbf3SStefano Zampini   Mat            B;
64b147fbf3SStefano Zampini   PetscInt       r;
65b147fbf3SStefano Zampini 
66b147fbf3SStefano Zampini   PetscFunctionBegin;
67b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
6828d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE,isdense;
69b147fbf3SStefano Zampini     PetscInt  bs;
70b147fbf3SStefano Zampini 
719566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
729566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N));
739566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,newtype));
749566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A,&bs));
759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B,bs));
769566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
779566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
789566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,""));
7928d58a37SPierre Jolivet     if (!isdense) {
809566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
819566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE));
829566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
8328d58a37SPierre Jolivet     } else {
849566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
8528d58a37SPierre Jolivet     }
8628d58a37SPierre Jolivet   } else {
8728d58a37SPierre Jolivet     B    = *newmat;
889566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
8928d58a37SPierre Jolivet   }
90b147fbf3SStefano Zampini 
919566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
92b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
93b147fbf3SStefano Zampini     PetscInt          ncols;
94b147fbf3SStefano Zampini     const PetscInt    *row;
95b147fbf3SStefano Zampini     const PetscScalar *vals;
96b147fbf3SStefano Zampini 
979566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A,r,&ncols,&row,&vals));
989566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES));
99eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
100eb1ec7c1SStefano Zampini     if (A->hermitian) {
101eb1ec7c1SStefano Zampini       PetscInt i;
102eb1ec7c1SStefano Zampini       for (i = 0; i < ncols; i++) {
1039566063dSJacob Faibussowitsch         PetscCall(MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES));
104eb1ec7c1SStefano Zampini       }
105eb1ec7c1SStefano Zampini     } else {
1069566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES));
107eb1ec7c1SStefano Zampini     }
108eb1ec7c1SStefano Zampini #else
1099566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES));
110eb1ec7c1SStefano Zampini #endif
1119566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A,r,&ncols,&row,&vals));
112b147fbf3SStefano Zampini   }
1139566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
1159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
116b147fbf3SStefano Zampini 
117b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1189566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&B));
119b147fbf3SStefano Zampini   } else {
120b147fbf3SStefano Zampini     *newmat = B;
121b147fbf3SStefano Zampini   }
122b147fbf3SStefano Zampini   PetscFunctionReturn(0);
123b147fbf3SStefano Zampini }
124b147fbf3SStefano Zampini 
1257087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
126a30f8f8cSSatish Balay {
127f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
128a30f8f8cSSatish Balay 
129a30f8f8cSSatish Balay   PetscFunctionBegin;
1309566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1319566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
132a30f8f8cSSatish Balay   PetscFunctionReturn(0);
133a30f8f8cSSatish Balay }
134a30f8f8cSSatish Balay 
1357087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
136a30f8f8cSSatish Balay {
137f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
138a30f8f8cSSatish Balay 
139a30f8f8cSSatish Balay   PetscFunctionBegin;
1409566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1419566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
142a30f8f8cSSatish Balay   PetscFunctionReturn(0);
143a30f8f8cSSatish Balay }
144a30f8f8cSSatish Balay 
145d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
146a30f8f8cSSatish Balay   { \
147a30f8f8cSSatish Balay     brow = row/bs;  \
148a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
149a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
150a30f8f8cSSatish Balay     bcol = col/bs; \
151a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
152a30f8f8cSSatish Balay     low  = 0; high = nrow; \
153a30f8f8cSSatish Balay     while (high-low > 3) { \
154a30f8f8cSSatish Balay       t = (low+high)/2; \
155a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
156a30f8f8cSSatish Balay       else              low  = t; \
157a30f8f8cSSatish Balay     } \
158a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
159a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
160a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
161a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
162a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
163a30f8f8cSSatish Balay         else                    *bap  = value;  \
164a30f8f8cSSatish Balay         goto a_noinsert; \
165a30f8f8cSSatish Balay       } \
166a30f8f8cSSatish Balay     } \
167a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
1685f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
169fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
170a30f8f8cSSatish Balay     N = nrow++ - 1;  \
171a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
1729566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1)); \
1739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \
1749566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap+bs2*_i,bs2));  \
175a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
176a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
177e56f5c9eSBarry Smith     A->nonzerostate++;\
178a30f8f8cSSatish Balay a_noinsert:; \
179a30f8f8cSSatish Balay     ailen[brow] = nrow; \
180a30f8f8cSSatish Balay   }
181e5e170daSBarry Smith 
182d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
183a30f8f8cSSatish Balay   { \
184a30f8f8cSSatish Balay     brow = row/bs;  \
185a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
186a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
187a30f8f8cSSatish Balay     bcol = col/bs; \
188a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
189a30f8f8cSSatish Balay     low  = 0; high = nrow; \
190a30f8f8cSSatish Balay     while (high-low > 3) { \
191a30f8f8cSSatish Balay       t = (low+high)/2; \
192a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
193a30f8f8cSSatish Balay       else              low  = t; \
194a30f8f8cSSatish Balay     } \
195a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
196a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
197a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
198a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
199a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
200a30f8f8cSSatish Balay         else                    *bap  = value;  \
201a30f8f8cSSatish Balay         goto b_noinsert; \
202a30f8f8cSSatish Balay       } \
203a30f8f8cSSatish Balay     } \
204a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2055f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
206fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
207a30f8f8cSSatish Balay     N = nrow++ - 1;  \
208a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2099566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1)); \
2109566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \
2119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \
212a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
213a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
214e56f5c9eSBarry Smith     B->nonzerostate++;\
215a30f8f8cSSatish Balay b_noinsert:; \
216a30f8f8cSSatish Balay     bilen[brow] = nrow; \
217a30f8f8cSSatish Balay   }
218a30f8f8cSSatish Balay 
219a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
220476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
221a30f8f8cSSatish Balay */
222dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
223a30f8f8cSSatish Balay {
224a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
225a30f8f8cSSatish Balay   MatScalar      value;
226ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
2271302d50aSBarry Smith   PetscInt       i,j,row,col;
228d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
229d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
230d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
231a30f8f8cSSatish Balay 
232a30f8f8cSSatish Balay   /* Some Variables required in the macro */
233a30f8f8cSSatish Balay   Mat          A     = baij->A;
234a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2351302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
236a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
237a30f8f8cSSatish Balay 
238a30f8f8cSSatish Balay   Mat         B     = baij->B;
239a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2401302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
241a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
242a30f8f8cSSatish Balay 
2431302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2441302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
245a30f8f8cSSatish Balay   MatScalar *ap,*bap;
246a30f8f8cSSatish Balay 
247a30f8f8cSSatish Balay   /* for stash */
2480298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2490298fd71SBarry Smith   MatScalar *v_loc = NULL;
250a30f8f8cSSatish Balay 
251a30f8f8cSSatish Balay   PetscFunctionBegin;
252a30f8f8cSSatish Balay   if (!baij->donotstash) {
25359ffdab8SBarry Smith     if (n > baij->n_loc) {
2549566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
2559566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
2569566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n,&baij->in_loc));
2579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n,&baij->v_loc));
25826fbe8dcSKarl Rupp 
25959ffdab8SBarry Smith       baij->n_loc = n;
26059ffdab8SBarry Smith     }
26159ffdab8SBarry Smith     in_loc = baij->in_loc;
26259ffdab8SBarry Smith     v_loc  = baij->v_loc;
263a30f8f8cSSatish Balay   }
264a30f8f8cSSatish Balay 
265a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
266a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2675f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
268a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
269a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
270a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
27101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
27201b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
27426fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
27501b2bd88SHong Zhang         }
276a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
277a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
278a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
279a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
280db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
281db4deed7SKarl Rupp           else             value = v[i+j*m];
282d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
2839566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
284a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2855f80ce2aSJacob Faibussowitsch         else PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1);
286a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
287a30f8f8cSSatish Balay           if (mat->was_assembled) {
288a30f8f8cSSatish Balay             if (!baij->colmap) {
2899566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
290a30f8f8cSSatish Balay             }
291a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2929566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col));
29371730473SSatish Balay             col  = col - 1;
294a30f8f8cSSatish Balay #else
29571730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
296a30f8f8cSSatish Balay #endif
297a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
2989566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
299a30f8f8cSSatish Balay               col  =  in[j];
300a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
301a30f8f8cSSatish Balay               B    = baij->B;
302a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
303a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
304a30f8f8cSSatish Balay               ba   = b->a;
30571730473SSatish Balay             } else col += in[j]%bs;
306a30f8f8cSSatish Balay           } else col = in[j];
307db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
308db4deed7SKarl Rupp           else             value = v[i+j*m];
309d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
3109566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
311a30f8f8cSSatish Balay         }
312a30f8f8cSSatish Balay       }
313a30f8f8cSSatish Balay     } else {  /* off processor entry */
3145f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
315a30f8f8cSSatish Balay       if (!baij->donotstash) {
3165080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
317a30f8f8cSSatish Balay         n_loc          = 0;
318a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
319f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
320a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
321a30f8f8cSSatish Balay           if (roworiented) {
322a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
323a30f8f8cSSatish Balay           } else {
324a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
325a30f8f8cSSatish Balay           }
326a30f8f8cSSatish Balay           n_loc++;
327a30f8f8cSSatish Balay         }
3289566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE));
329a30f8f8cSSatish Balay       }
330a30f8f8cSSatish Balay     }
331a30f8f8cSSatish Balay   }
332a30f8f8cSSatish Balay   PetscFunctionReturn(0);
333a30f8f8cSSatish Balay }
334a30f8f8cSSatish Balay 
3359fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
33636bd2089SBarry Smith {
33736bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
33836bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
33936bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
34036bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34136bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
34236bd2089SBarry Smith   const PetscScalar *value     = v;
34336bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
34436bd2089SBarry Smith 
34536bd2089SBarry Smith   PetscFunctionBegin;
34636bd2089SBarry Smith   if (col < row) {
34736bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
34836bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
34936bd2089SBarry Smith   }
35036bd2089SBarry Smith   rp   = aj + ai[row];
35136bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35236bd2089SBarry Smith   rmax = imax[row];
35336bd2089SBarry Smith   nrow = ailen[row];
35436bd2089SBarry Smith   value = v;
35536bd2089SBarry Smith   low   = 0;
35636bd2089SBarry Smith   high  = nrow;
35736bd2089SBarry Smith 
35836bd2089SBarry Smith   while (high-low > 7) {
35936bd2089SBarry Smith     t = (low+high)/2;
36036bd2089SBarry Smith     if (rp[t] > col) high = t;
36136bd2089SBarry Smith     else             low  = t;
36236bd2089SBarry Smith   }
36336bd2089SBarry Smith   for (i=low; i<high; i++) {
36436bd2089SBarry Smith     if (rp[i] > col) break;
36536bd2089SBarry Smith     if (rp[i] == col) {
36636bd2089SBarry Smith       bap = ap +  bs2*i;
36736bd2089SBarry Smith       if (roworiented) {
36836bd2089SBarry Smith         if (is == ADD_VALUES) {
36936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37036bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37136bd2089SBarry Smith               bap[jj] += *value++;
37236bd2089SBarry Smith             }
37336bd2089SBarry Smith           }
37436bd2089SBarry Smith         } else {
37536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37736bd2089SBarry Smith               bap[jj] = *value++;
37836bd2089SBarry Smith             }
37936bd2089SBarry Smith           }
38036bd2089SBarry Smith         }
38136bd2089SBarry Smith       } else {
38236bd2089SBarry Smith         if (is == ADD_VALUES) {
38336bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38536bd2089SBarry Smith               *bap++ += *value++;
38636bd2089SBarry Smith             }
38736bd2089SBarry Smith           }
38836bd2089SBarry Smith         } else {
38936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39136bd2089SBarry Smith               *bap++  = *value++;
39236bd2089SBarry Smith             }
39336bd2089SBarry Smith           }
39436bd2089SBarry Smith         }
39536bd2089SBarry Smith       }
39636bd2089SBarry Smith       goto noinsert2;
39736bd2089SBarry Smith     }
39836bd2089SBarry Smith   }
39936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4005f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
40136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40236bd2089SBarry Smith   N = nrow++ - 1; high++;
40336bd2089SBarry Smith   /* shift up all the later entries in this row */
4049566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1));
4059566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1)));
40636bd2089SBarry Smith   rp[i] = col;
40736bd2089SBarry Smith   bap   = ap +  bs2*i;
40836bd2089SBarry Smith   if (roworiented) {
40936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
41136bd2089SBarry Smith         bap[jj] = *value++;
41236bd2089SBarry Smith       }
41336bd2089SBarry Smith     }
41436bd2089SBarry Smith   } else {
41536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
41736bd2089SBarry Smith         *bap++ = *value++;
41836bd2089SBarry Smith       }
41936bd2089SBarry Smith     }
42036bd2089SBarry Smith   }
42136bd2089SBarry Smith   noinsert2:;
42236bd2089SBarry Smith   ailen[row] = nrow;
42336bd2089SBarry Smith   PetscFunctionReturn(0);
42436bd2089SBarry Smith }
42536bd2089SBarry Smith 
42636bd2089SBarry Smith /*
42736bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
42836bd2089SBarry Smith */
4299fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
43036bd2089SBarry Smith {
43136bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
43236bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
43336bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
43436bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
43536bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
43636bd2089SBarry Smith   const PetscScalar *value     = v;
43736bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
43836bd2089SBarry Smith 
43936bd2089SBarry Smith   PetscFunctionBegin;
44036bd2089SBarry Smith   rp   = aj + ai[row];
44136bd2089SBarry Smith   ap   = aa + bs2*ai[row];
44236bd2089SBarry Smith   rmax = imax[row];
44336bd2089SBarry Smith   nrow = ailen[row];
44436bd2089SBarry Smith   low  = 0;
44536bd2089SBarry Smith   high = nrow;
44636bd2089SBarry Smith   value = v;
44736bd2089SBarry Smith   while (high-low > 7) {
44836bd2089SBarry Smith     t = (low+high)/2;
44936bd2089SBarry Smith     if (rp[t] > col) high = t;
45036bd2089SBarry Smith     else             low  = t;
45136bd2089SBarry Smith   }
45236bd2089SBarry Smith   for (i=low; i<high; i++) {
45336bd2089SBarry Smith     if (rp[i] > col) break;
45436bd2089SBarry Smith     if (rp[i] == col) {
45536bd2089SBarry Smith       bap = ap +  bs2*i;
45636bd2089SBarry Smith       if (roworiented) {
45736bd2089SBarry Smith         if (is == ADD_VALUES) {
45836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
45936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46036bd2089SBarry Smith               bap[jj] += *value++;
46136bd2089SBarry Smith             }
46236bd2089SBarry Smith           }
46336bd2089SBarry Smith         } else {
46436bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46536bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46636bd2089SBarry Smith               bap[jj] = *value++;
46736bd2089SBarry Smith             }
46836bd2089SBarry Smith           }
46936bd2089SBarry Smith         }
47036bd2089SBarry Smith       } else {
47136bd2089SBarry Smith         if (is == ADD_VALUES) {
47236bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
47336bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
47436bd2089SBarry Smith               bap[jj] += value[jj];
47536bd2089SBarry Smith             }
47636bd2089SBarry Smith             bap += bs;
47736bd2089SBarry Smith           }
47836bd2089SBarry Smith         } else {
47936bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48136bd2089SBarry Smith               bap[jj]  = value[jj];
48236bd2089SBarry Smith             }
48336bd2089SBarry Smith             bap += bs;
48436bd2089SBarry Smith           }
48536bd2089SBarry Smith         }
48636bd2089SBarry Smith       }
48736bd2089SBarry Smith       goto noinsert2;
48836bd2089SBarry Smith     }
48936bd2089SBarry Smith   }
49036bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4915f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
49236bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
49336bd2089SBarry Smith   N = nrow++ - 1; high++;
49436bd2089SBarry Smith   /* shift up all the later entries in this row */
4959566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1));
4969566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1)));
49736bd2089SBarry Smith   rp[i] = col;
49836bd2089SBarry Smith   bap   = ap +  bs2*i;
49936bd2089SBarry Smith   if (roworiented) {
50036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50136bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
50236bd2089SBarry Smith         bap[jj] = *value++;
50336bd2089SBarry Smith       }
50436bd2089SBarry Smith     }
50536bd2089SBarry Smith   } else {
50636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50736bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
50836bd2089SBarry Smith         *bap++ = *value++;
50936bd2089SBarry Smith       }
51036bd2089SBarry Smith     }
51136bd2089SBarry Smith   }
51236bd2089SBarry Smith   noinsert2:;
51336bd2089SBarry Smith   ailen[row] = nrow;
51436bd2089SBarry Smith   PetscFunctionReturn(0);
51536bd2089SBarry Smith }
51636bd2089SBarry Smith 
51736bd2089SBarry Smith /*
51836bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
51936bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
52036bd2089SBarry Smith */
521dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
522a30f8f8cSSatish Balay {
5230880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
524f15d580aSBarry Smith   const MatScalar *value;
525f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
526ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
527899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
528476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
529476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5300880e062SHong Zhang 
531a30f8f8cSSatish Balay   PetscFunctionBegin;
5320880e062SHong Zhang   if (!barray) {
5339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2,&barray));
5340880e062SHong Zhang     baij->barray = barray;
5350880e062SHong Zhang   }
5360880e062SHong Zhang 
5370880e062SHong Zhang   if (roworiented) {
5380880e062SHong Zhang     stepval = (n-1)*bs;
5390880e062SHong Zhang   } else {
5400880e062SHong Zhang     stepval = (m-1)*bs;
5410880e062SHong Zhang   }
5420880e062SHong Zhang   for (i=0; i<m; i++) {
5430880e062SHong Zhang     if (im[i] < 0) continue;
5446bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
5450880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5460880e062SHong Zhang       row = im[i] - rstart;
5470880e062SHong Zhang       for (j=0; j<n; j++) {
548f3f98c53SJed Brown         if (im[i] > in[j]) {
549f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
550e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
551f3f98c53SJed Brown         }
5520880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5530880e062SHong Zhang         if ((roworiented) && (n == 1)) {
554f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5550880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
556f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5570880e062SHong Zhang         } else { /* Here a copy is required */
5580880e062SHong Zhang           if (roworiented) {
5590880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5600880e062SHong Zhang           } else {
5610880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5620880e062SHong Zhang           }
5630880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5640880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5650880e062SHong Zhang               *barray++ = *value++;
5660880e062SHong Zhang             }
5670880e062SHong Zhang           }
5680880e062SHong Zhang           barray -=bs2;
5690880e062SHong Zhang         }
5700880e062SHong Zhang 
5710880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5720880e062SHong Zhang           col  = in[j] - cstart;
5739566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]));
57426fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
5756bdcaf15SBarry Smith         else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1);
5760880e062SHong Zhang         else {
5770880e062SHong Zhang           if (mat->was_assembled) {
5780880e062SHong Zhang             if (!baij->colmap) {
5799566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
5800880e062SHong Zhang             }
5810880e062SHong Zhang 
5822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5830880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5841302d50aSBarry Smith             { PetscInt data;
5859566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data));
58608401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5870880e062SHong Zhang             }
5880880e062SHong Zhang #else
58908401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5900880e062SHong Zhang #endif
5910880e062SHong Zhang #endif
5920880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5939566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col));
5940880e062SHong Zhang             col  = (col - 1)/bs;
5950880e062SHong Zhang #else
5960880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5970880e062SHong Zhang #endif
5980880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5999566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6000880e062SHong Zhang               col  = in[j];
6010880e062SHong Zhang             }
60226fbe8dcSKarl Rupp           } else col = in[j];
6039566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]));
6040880e062SHong Zhang         }
6050880e062SHong Zhang       }
6060880e062SHong Zhang     } else {
6075f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6080880e062SHong Zhang       if (!baij->donotstash) {
6090880e062SHong Zhang         if (roworiented) {
6109566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
6110880e062SHong Zhang         } else {
6129566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
6130880e062SHong Zhang         }
6140880e062SHong Zhang       }
6150880e062SHong Zhang     }
6160880e062SHong Zhang   }
6170880e062SHong Zhang   PetscFunctionReturn(0);
618a30f8f8cSSatish Balay }
619a30f8f8cSSatish Balay 
6201302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
621a30f8f8cSSatish Balay {
622f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
623d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
624d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
625a30f8f8cSSatish Balay 
626a30f8f8cSSatish Balay   PetscFunctionBegin;
627a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
62854c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
62954c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1);
630a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
631a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
632a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
63354c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
63454c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1);
635a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
636a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
6379566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j));
638a30f8f8cSSatish Balay         } else {
639a30f8f8cSSatish Balay           if (!baij->colmap) {
6409566063dSJacob Faibussowitsch             PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
641a30f8f8cSSatish Balay           }
642a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
6439566063dSJacob Faibussowitsch           PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data));
644a30f8f8cSSatish Balay           data--;
645a30f8f8cSSatish Balay #else
646a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
647a30f8f8cSSatish Balay #endif
648a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
649a30f8f8cSSatish Balay           else {
650a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
6519566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j));
652a30f8f8cSSatish Balay           }
653a30f8f8cSSatish Balay         }
654a30f8f8cSSatish Balay       }
655f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
656a30f8f8cSSatish Balay   }
657a30f8f8cSSatish Balay   PetscFunctionReturn(0);
658a30f8f8cSSatish Balay }
659a30f8f8cSSatish Balay 
660dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
661a30f8f8cSSatish Balay {
662a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
663a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   PetscFunctionBegin;
666a30f8f8cSSatish Balay   if (baij->size == 1) {
6679566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A,type,norm));
668a30f8f8cSSatish Balay   } else {
669a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
6709566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2,&lnorm2));
6719566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A,type,lnorm2));
672a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
6739566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B,type,lnorm2));
674a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
6751c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat)));
6768f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
6779566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
6780b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6790b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6800b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6810b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
682899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
683d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6840b8dc8d2SHong Zhang       MatScalar    *v;
6850b8dc8d2SHong Zhang 
6869566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2));
6879566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum,mat->cmap->N));
6880b8dc8d2SHong Zhang       /* Amat */
6890b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6900b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6910b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6920b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6930b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6940b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6950b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6960b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6970b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6980b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6990b8dc8d2SHong Zhang               /* non-diagonal block */
7000b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7010b8dc8d2SHong Zhang             }
7020b8dc8d2SHong Zhang           }
7030b8dc8d2SHong Zhang         }
7049566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz*bs*bs));
7050b8dc8d2SHong Zhang       }
7060b8dc8d2SHong Zhang       /* Bmat */
7070b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7080b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7090b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7100b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7110b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7120b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7130b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7140b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7150b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7160b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7170b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7180b8dc8d2SHong Zhang             }
7190b8dc8d2SHong Zhang           }
7200b8dc8d2SHong Zhang         }
7219566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz*bs*bs));
7220b8dc8d2SHong Zhang       }
7231c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat)));
7240b8dc8d2SHong Zhang       *norm = 0.0;
725d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7260b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7270b8dc8d2SHong Zhang       }
7289566063dSJacob Faibussowitsch       PetscCall(PetscFree2(rsum,rsum2));
729f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
730a30f8f8cSSatish Balay   }
731a30f8f8cSSatish Balay   PetscFunctionReturn(0);
732a30f8f8cSSatish Balay }
733a30f8f8cSSatish Balay 
734dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
735a30f8f8cSSatish Balay {
736a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
7371302d50aSBarry Smith   PetscInt       nstash,reallocs;
738a30f8f8cSSatish Balay 
739a30f8f8cSSatish Balay   PetscFunctionBegin;
74026fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
741a30f8f8cSSatish Balay 
7429566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range));
7439566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs));
7449566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs));
7459566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
7469566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs));
7479566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
748a30f8f8cSSatish Balay   PetscFunctionReturn(0);
749a30f8f8cSSatish Balay }
750a30f8f8cSSatish Balay 
751dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
752a30f8f8cSSatish Balay {
753a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
754a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
75513f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
756e44c0bd4SBarry Smith   PetscInt       *row,*col;
757ace3abfcSBarry Smith   PetscBool      other_disassembled;
75813f74950SBarry Smith   PetscMPIInt    n;
759ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
760a30f8f8cSSatish Balay   MatScalar      *val;
761a30f8f8cSSatish Balay 
76291c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
763a30f8f8cSSatish Balay   PetscFunctionBegin;
7644cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
765a30f8f8cSSatish Balay     while (1) {
7669566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg));
767a30f8f8cSSatish Balay       if (!flg) break;
768a30f8f8cSSatish Balay 
769a30f8f8cSSatish Balay       for (i=0; i<n;) {
770a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
77126fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
77226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
77326fbe8dcSKarl Rupp         }
774a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
775a30f8f8cSSatish Balay         else       ncols = n-i;
776a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7779566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode));
778a30f8f8cSSatish Balay         i    = j;
779a30f8f8cSSatish Balay       }
780a30f8f8cSSatish Balay     }
7819566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
782a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
783a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
784a30f8f8cSSatish Balay        restore the original flags */
785a30f8f8cSSatish Balay     r1 = baij->roworiented;
786a30f8f8cSSatish Balay     r2 = a->roworiented;
78791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
78826fbe8dcSKarl Rupp 
789a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
790a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
79126fbe8dcSKarl Rupp 
79291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
793a30f8f8cSSatish Balay     while (1) {
7949566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg));
795a30f8f8cSSatish Balay       if (!flg) break;
796a30f8f8cSSatish Balay 
797a30f8f8cSSatish Balay       for (i=0; i<n;) {
798a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
79926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
80026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
80126fbe8dcSKarl Rupp         }
802a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
803a30f8f8cSSatish Balay         else       ncols = n-i;
8049566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode));
805a30f8f8cSSatish Balay         i    = j;
806a30f8f8cSSatish Balay       }
807a30f8f8cSSatish Balay     }
8089566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
80926fbe8dcSKarl Rupp 
810a30f8f8cSSatish Balay     baij->roworiented = r1;
811a30f8f8cSSatish Balay     a->roworiented    = r2;
81226fbe8dcSKarl Rupp 
81391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
814a30f8f8cSSatish Balay   }
815a30f8f8cSSatish Balay 
8169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A,mode));
8179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A,mode));
818a30f8f8cSSatish Balay 
819a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
820a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
821a30f8f8cSSatish Balay   /*
822a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
823a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
824a30f8f8cSSatish Balay   */
825a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
8261c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat)));
827a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
8289566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPISBAIJ(mat));
829a30f8f8cSSatish Balay     }
830a30f8f8cSSatish Balay   }
831a30f8f8cSSatish Balay 
832a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
8339566063dSJacob Faibussowitsch     PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */
834a30f8f8cSSatish Balay   }
8359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B,mode));
8369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B,mode));
837a30f8f8cSSatish Balay 
8389566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues,baij->rowindices));
83926fbe8dcSKarl Rupp 
840f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8414f9cfa9eSBarry Smith 
8424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8434f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
844e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
8451c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat)));
846e56f5c9eSBarry Smith   }
847a30f8f8cSSatish Balay   PetscFunctionReturn(0);
848a30f8f8cSSatish Balay }
849a30f8f8cSSatish Balay 
850dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8519804daf3SBarry Smith #include <petscdraw.h>
8526849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
853a30f8f8cSSatish Balay {
854a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
855d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8567da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
857ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
858b0a32e0cSBarry Smith   PetscViewer       sviewer;
859f3ef73ceSBarry Smith   PetscViewerFormat format;
860a30f8f8cSSatish Balay 
861a30f8f8cSSatish Balay   PetscFunctionBegin;
8629566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
8639566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
86432077d6dSBarry Smith   if (iascii) {
8659566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer,&format));
866456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
867a30f8f8cSSatish Balay       MatInfo info;
8689566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank));
8699566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat,MAT_LOCAL,&info));
8709566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
8719566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory));
8729566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info));
8739566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
8749566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info));
8759566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
8769566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
8779566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
8789566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n"));
8799566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx,viewer));
880a30f8f8cSSatish Balay       PetscFunctionReturn(0);
881fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
8829566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"  block size is %" PetscInt_FMT "\n",bs));
883a30f8f8cSSatish Balay       PetscFunctionReturn(0);
884c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
885c1490034SHong Zhang       PetscFunctionReturn(0);
886a30f8f8cSSatish Balay     }
887a30f8f8cSSatish Balay   }
888a30f8f8cSSatish Balay 
889a30f8f8cSSatish Balay   if (isdraw) {
890b0a32e0cSBarry Smith     PetscDraw draw;
891ace3abfcSBarry Smith     PetscBool isnull;
8929566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw));
8939566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw,&isnull));
89445f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
895a30f8f8cSSatish Balay   }
896a30f8f8cSSatish Balay 
8977da1fb6eSBarry Smith   {
898a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
899a30f8f8cSSatish Balay     Mat          A;
90065d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
90165d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
902d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
903a30f8f8cSSatish Balay     MatScalar    *a;
9043e219373SBarry Smith     const char   *matname;
905a30f8f8cSSatish Balay 
906f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9079566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A));
908dd400576SPatrick Sanan     if (rank == 0) {
9099566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,M,N,M,N));
910a30f8f8cSSatish Balay     } else {
9119566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,0,0,M,N));
912a30f8f8cSSatish Balay     }
9139566063dSJacob Faibussowitsch     PetscCall(MatSetType(A,MATMPISBAIJ));
9149566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL));
9159566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE));
9169566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A));
917a30f8f8cSSatish Balay 
918a30f8f8cSSatish Balay     /* copy over the A part */
91965d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
920a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
9219566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs,&rvals));
922a30f8f8cSSatish Balay 
923a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
924e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
92526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
926a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
927e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
928a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
9299566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES));
93026fbe8dcSKarl Rupp           col++;
93126fbe8dcSKarl Rupp           a += bs;
932a30f8f8cSSatish Balay         }
933a30f8f8cSSatish Balay       }
934a30f8f8cSSatish Balay     }
935a30f8f8cSSatish Balay     /* copy over the B part */
93665d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
93765d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
938a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
939e9f7bc9eSHong Zhang 
940e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
94126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
942a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
943a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
944a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
9459566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES));
94626fbe8dcSKarl Rupp           col++;
94726fbe8dcSKarl Rupp           a += bs;
948a30f8f8cSSatish Balay         }
949a30f8f8cSSatish Balay       }
950a30f8f8cSSatish Balay     }
9519566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9529566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
9539566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
954a30f8f8cSSatish Balay     /*
955a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
956b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
957a30f8f8cSSatish Balay     */
9589566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
9599566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)mat,&matname));
960dd400576SPatrick Sanan     if (rank == 0) {
9619566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname));
9629566063dSJacob Faibussowitsch       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer));
963a30f8f8cSSatish Balay     }
9649566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
9659566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
9669566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
967a30f8f8cSSatish Balay   }
968a30f8f8cSSatish Balay   PetscFunctionReturn(0);
969a30f8f8cSSatish Balay }
970a30f8f8cSSatish Balay 
971618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
972618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
973d1654148SHong Zhang 
974dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
975a30f8f8cSSatish Balay {
976ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
977a30f8f8cSSatish Balay 
978a30f8f8cSSatish Balay   PetscFunctionBegin;
9799566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
9809566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
9819566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket));
9829566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
983d1654148SHong Zhang   if (iascii || isdraw || issocket) {
9849566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer));
985d1654148SHong Zhang   } else if (isbinary) {
9869566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_Binary(mat,viewer));
987a30f8f8cSSatish Balay   }
988a30f8f8cSSatish Balay   PetscFunctionReturn(0);
989a30f8f8cSSatish Balay }
990a30f8f8cSSatish Balay 
991dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
992a30f8f8cSSatish Balay {
993a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
994a30f8f8cSSatish Balay 
995a30f8f8cSSatish Balay   PetscFunctionBegin;
996a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
997c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N);
998a30f8f8cSSatish Balay #endif
9999566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
10009566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->bstash));
10019566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->A));
10029566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->B));
1003a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
10049566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&baij->colmap));
1005a30f8f8cSSatish Balay #else
10069566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->colmap));
1007a30f8f8cSSatish Balay #endif
10089566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->garray));
10099566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->lvec));
10109566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->Mvctx));
10119566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec0));
10129566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec0b));
10139566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1));
10149566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1a));
10159566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->slvec1b));
10169566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->sMvctx));
10179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues,baij->rowindices));
10189566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->barray));
10199566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->hd));
10209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->diag));
10219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->bb1));
10229566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->xx1));
1023ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
10249566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->setvaluescopy));
1025a30f8f8cSSatish Balay #endif
10269566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->in_loc));
10279566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->v_loc));
10289566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->rangebs));
10299566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1030901853e0SKris Buschelman 
10319566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL));
10329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL));
10339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL));
10349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL));
10359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL));
10366214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
10379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL));
10386214f412SHong Zhang #endif
1039d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
10409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL));
1041d24d4204SJose E. Roman #endif
10429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL));
10439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL));
1044a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1045a30f8f8cSSatish Balay }
1046a30f8f8cSSatish Balay 
1047547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1048547795f9SHong Zhang {
1049547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1050eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
10516de40e93SBarry Smith   PetscScalar       *from;
10526de40e93SBarry Smith   const PetscScalar *x;
1053547795f9SHong Zhang 
1054547795f9SHong Zhang   PetscFunctionBegin;
1055547795f9SHong Zhang   /* diagonal part */
10569566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A,xx,a->slvec1a));
10579566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b,0.0));
1058547795f9SHong Zhang 
1059547795f9SHong Zhang   /* subdiagonal part */
10605f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name);
10619566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b));
1062547795f9SHong Zhang 
1063547795f9SHong Zhang   /* copy x into the vec slvec0 */
10649566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&from));
10659566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
1066547795f9SHong Zhang 
10679566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from,x,bs*mbs));
10689566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&from));
10699566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
1070547795f9SHong Zhang 
10719566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
10729566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
1073547795f9SHong Zhang   /* supperdiagonal part */
10749566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy));
1075547795f9SHong Zhang   PetscFunctionReturn(0);
1076547795f9SHong Zhang }
1077547795f9SHong Zhang 
1078dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1079a9d4b620SHong Zhang {
1080a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1081eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1082d9ca1df4SBarry Smith   PetscScalar       *from;
1083d9ca1df4SBarry Smith   const PetscScalar *x;
1084a9d4b620SHong Zhang 
1085a9d4b620SHong Zhang   PetscFunctionBegin;
1086a9d4b620SHong Zhang   /* diagonal part */
10879566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A,xx,a->slvec1a));
10889566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b,0.0));
1089a9d4b620SHong Zhang 
1090a9d4b620SHong Zhang   /* subdiagonal part */
10919566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->slvec0b));
1092fc165ae2SBarry Smith 
1093a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&from));
10959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
1096a9d4b620SHong Zhang 
10979566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from,x,bs*mbs));
10989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&from));
10999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
1100fc165ae2SBarry Smith 
11019566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
11029566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
1103a9d4b620SHong Zhang   /* supperdiagonal part */
11049566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy));
1105a9d4b620SHong Zhang   PetscFunctionReturn(0);
1106a9d4b620SHong Zhang }
1107a9d4b620SHong Zhang 
1108eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz)
1109eb1ec7c1SStefano Zampini {
1110eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1111eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1112eb1ec7c1SStefano Zampini   PetscScalar       *from,zero=0.0;
1113eb1ec7c1SStefano Zampini   const PetscScalar *x;
1114eb1ec7c1SStefano Zampini 
1115eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1116eb1ec7c1SStefano Zampini   /* diagonal part */
11179566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a));
11189566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b,zero));
1119eb1ec7c1SStefano Zampini 
1120eb1ec7c1SStefano Zampini   /* subdiagonal part */
11215f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name);
11229566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b));
1123eb1ec7c1SStefano Zampini 
1124eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11259566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&from));
11269566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
11279566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from,x,bs*mbs));
11289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&from));
1129eb1ec7c1SStefano Zampini 
11309566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
11319566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
11329566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
1133eb1ec7c1SStefano Zampini 
1134eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11359566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz));
1136eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1137eb1ec7c1SStefano Zampini }
1138eb1ec7c1SStefano Zampini 
1139dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1140a30f8f8cSSatish Balay {
1141de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1142d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1143d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1144d9ca1df4SBarry Smith   const PetscScalar *x;
1145a9d4b620SHong Zhang 
1146a9d4b620SHong Zhang   PetscFunctionBegin;
1147a9d4b620SHong Zhang   /* diagonal part */
11489566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a));
11499566063dSJacob Faibussowitsch   PetscCall(VecSet(a->slvec1b,zero));
1150a9d4b620SHong Zhang 
1151a9d4b620SHong Zhang   /* subdiagonal part */
11529566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->slvec0b));
1153a9d4b620SHong Zhang 
1154a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11559566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&from));
11569566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
11579566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from,x,bs*mbs));
11589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&from));
1159a9d4b620SHong Zhang 
11609566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
11619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
11629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD));
1163a9d4b620SHong Zhang 
1164a9d4b620SHong Zhang   /* supperdiagonal part */
11659566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz));
1166a9d4b620SHong Zhang   PetscFunctionReturn(0);
1167a9d4b620SHong Zhang }
1168a9d4b620SHong Zhang 
1169a30f8f8cSSatish Balay /*
1170a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1171a30f8f8cSSatish Balay    diagonal block
1172a30f8f8cSSatish Balay */
1173dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1174a30f8f8cSSatish Balay {
1175a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1176a30f8f8cSSatish Balay 
1177a30f8f8cSSatish Balay   PetscFunctionBegin;
117808401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11799566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A,v));
1180a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1181a30f8f8cSSatish Balay }
1182a30f8f8cSSatish Balay 
1183f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1184a30f8f8cSSatish Balay {
1185a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1186a30f8f8cSSatish Balay 
1187a30f8f8cSSatish Balay   PetscFunctionBegin;
11889566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A,aa));
11899566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B,aa));
1190a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1191a30f8f8cSSatish Balay }
1192a30f8f8cSSatish Balay 
11931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1194a30f8f8cSSatish Balay {
1195d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data;
1196d0d4cfc2SHong Zhang   PetscScalar  *vworkA,*vworkB,**pvA,**pvB,*v_p;
1197d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1198d0f46423SBarry Smith   PetscInt     nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1199899cda47SBarry Smith   PetscInt    *cmap,*idx_p,cstart = mat->rstartbs;
1200d0d4cfc2SHong Zhang 
1201a30f8f8cSSatish Balay   PetscFunctionBegin;
12025f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1203d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1204d0d4cfc2SHong Zhang 
1205d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1206d0d4cfc2SHong Zhang     /*
1207d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1208d0d4cfc2SHong Zhang     */
1209d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1210d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1211d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1212d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1213d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
121426fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1215d0d4cfc2SHong Zhang     }
12169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices));
1217d0d4cfc2SHong Zhang   }
1218d0d4cfc2SHong Zhang 
12195f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1220d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1221d0d4cfc2SHong Zhang 
1222d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1223f4259b30SLisandro Dalcin   if (!v)   {pvA = NULL; pvB = NULL;}
1224f4259b30SLisandro Dalcin   if (!idx) {pcA = NULL; if (!v) pcB = NULL;}
12259566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA));
12269566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB));
1227d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1228d0d4cfc2SHong Zhang 
1229d0d4cfc2SHong Zhang   cmap = mat->garray;
1230d0d4cfc2SHong Zhang   if (v  || idx) {
1231d0d4cfc2SHong Zhang     if (nztot) {
1232d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1233d0d4cfc2SHong Zhang       PetscInt imark = -1;
1234d0d4cfc2SHong Zhang       if (v) {
1235d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1236d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1237d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1238d0d4cfc2SHong Zhang           else break;
1239d0d4cfc2SHong Zhang         }
1240d0d4cfc2SHong Zhang         imark = i;
1241d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1242d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1243d0d4cfc2SHong Zhang       }
1244d0d4cfc2SHong Zhang       if (idx) {
1245d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1246d0d4cfc2SHong Zhang         if (imark > -1) {
1247d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1248d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1249d0d4cfc2SHong Zhang           }
1250d0d4cfc2SHong Zhang         } else {
1251d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
125226fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1253d0d4cfc2SHong Zhang             else break;
1254d0d4cfc2SHong Zhang           }
1255d0d4cfc2SHong Zhang           imark = i;
1256d0d4cfc2SHong Zhang         }
1257d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1258d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1259d0d4cfc2SHong Zhang       }
1260d0d4cfc2SHong Zhang     } else {
1261f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1262f4259b30SLisandro Dalcin       if (v)   *v   = NULL;
1263d0d4cfc2SHong Zhang     }
1264d0d4cfc2SHong Zhang   }
1265d0d4cfc2SHong Zhang   *nz  = nztot;
12669566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA));
12679566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB));
1268a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1269a30f8f8cSSatish Balay }
1270a30f8f8cSSatish Balay 
12711302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1272a30f8f8cSSatish Balay {
1273a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1274a30f8f8cSSatish Balay 
1275a30f8f8cSSatish Balay   PetscFunctionBegin;
12765f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1277a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1278a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1279a30f8f8cSSatish Balay }
1280a30f8f8cSSatish Balay 
1281d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1282d0d4cfc2SHong Zhang {
1283d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1284d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1285d0d4cfc2SHong Zhang 
1286d0d4cfc2SHong Zhang   PetscFunctionBegin;
1287d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1288d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1289d0d4cfc2SHong Zhang }
1290d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1291d0d4cfc2SHong Zhang {
1292d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1293d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1294d0d4cfc2SHong Zhang 
1295d0d4cfc2SHong Zhang   PetscFunctionBegin;
1296d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1297d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1298d0d4cfc2SHong Zhang }
1299d0d4cfc2SHong Zhang 
13002726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
13012726fb6dSPierre Jolivet {
13025f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
13035f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
13042726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data;
13052726fb6dSPierre Jolivet 
13069566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
13079566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
13085f80ce2aSJacob Faibussowitsch   }
13092726fb6dSPierre Jolivet   PetscFunctionReturn(0);
13102726fb6dSPierre Jolivet }
13112726fb6dSPierre Jolivet 
131299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
131399cafbc1SBarry Smith {
131499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
131599cafbc1SBarry Smith 
131699cafbc1SBarry Smith   PetscFunctionBegin;
13179566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13189566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
131999cafbc1SBarry Smith   PetscFunctionReturn(0);
132099cafbc1SBarry Smith }
132199cafbc1SBarry Smith 
132299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
132399cafbc1SBarry Smith {
132499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
132599cafbc1SBarry Smith 
132699cafbc1SBarry Smith   PetscFunctionBegin;
13279566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13289566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
132999cafbc1SBarry Smith   PetscFunctionReturn(0);
133099cafbc1SBarry Smith }
133199cafbc1SBarry Smith 
13327dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
133336032a97SHong Zhang    Input: isrow       - distributed(parallel),
133436032a97SHong Zhang           iscol_local - locally owned (seq)
133536032a97SHong Zhang */
133636032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13378f46ffcaSHong Zhang {
13388f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13398f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
134036032a97SHong Zhang 
134136032a97SHong Zhang   PetscFunctionBegin;
13429566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow,&sz1));
13439566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local,&sz2));
13441098a8e8SHong Zhang   if (sz1 > sz2) {
13451098a8e8SHong Zhang     *flg = PETSC_FALSE;
13461098a8e8SHong Zhang     PetscFunctionReturn(0);
13471098a8e8SHong Zhang   }
13488f46ffcaSHong Zhang 
13499566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow,&ptr1));
13509566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local,&ptr2));
13518f46ffcaSHong Zhang 
13529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1,&a1));
13539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2,&a2));
13549566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1,ptr1,sz1));
13559566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2,ptr2,sz2));
13569566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1,a1));
13579566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2,a2));
13588f46ffcaSHong Zhang 
13598f46ffcaSHong Zhang   nmatch=0;
13608f46ffcaSHong Zhang   k     = 0;
13618f46ffcaSHong Zhang   for (i=0; i<sz1; i++) {
13628f46ffcaSHong Zhang     for (j=k; j<sz2; j++) {
13638f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13648f46ffcaSHong Zhang         k = j; nmatch++;
13658f46ffcaSHong Zhang         break;
13668f46ffcaSHong Zhang       }
13678f46ffcaSHong Zhang     }
13688f46ffcaSHong Zhang   }
13699566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow,&ptr1));
13709566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local,&ptr2));
13719566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13729566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13731098a8e8SHong Zhang   if (nmatch < sz1) {
13741098a8e8SHong Zhang     *flg = PETSC_FALSE;
13751098a8e8SHong Zhang   } else {
13761098a8e8SHong Zhang     *flg = PETSC_TRUE;
13771098a8e8SHong Zhang   }
137836032a97SHong Zhang   PetscFunctionReturn(0);
13798f46ffcaSHong Zhang }
138036032a97SHong Zhang 
13817dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
138236032a97SHong Zhang {
138336032a97SHong Zhang   IS             iscol_local;
138436032a97SHong Zhang   PetscInt       csize;
138536032a97SHong Zhang   PetscBool      isequal;
138636032a97SHong Zhang 
138736032a97SHong Zhang   PetscFunctionBegin;
13889566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol,&csize));
138936032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13909566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local));
13915f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
139236032a97SHong Zhang   } else {
1393068661f9SToby Isaac     PetscBool issorted;
1394068661f9SToby Isaac 
13959566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol,&iscol_local));
13969566063dSJacob Faibussowitsch     PetscCall(ISEqual_private(isrow,iscol_local,&isequal));
13979566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
13985f80ce2aSJacob Faibussowitsch     PetscCheck(isequal && issorted,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow and be sorted");
13998f46ffcaSHong Zhang   }
14008f46ffcaSHong Zhang 
14017dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
14029566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat));
14038f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
14049566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local));
14059566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14068f46ffcaSHong Zhang   }
14078f46ffcaSHong Zhang   PetscFunctionReturn(0);
14088f46ffcaSHong Zhang }
14098f46ffcaSHong Zhang 
1410dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1411a30f8f8cSSatish Balay {
1412a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1413a30f8f8cSSatish Balay 
1414a30f8f8cSSatish Balay   PetscFunctionBegin;
14159566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14169566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
1417a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1418a30f8f8cSSatish Balay }
1419a30f8f8cSSatish Balay 
1420dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1421a30f8f8cSSatish Balay {
1422a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1423a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
14243966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
1425a30f8f8cSSatish Balay 
1426a30f8f8cSSatish Balay   PetscFunctionBegin;
1427d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142826fbe8dcSKarl Rupp 
14299566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A,MAT_LOCAL,info));
143026fbe8dcSKarl Rupp 
1431a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1432a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
143326fbe8dcSKarl Rupp 
14349566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B,MAT_LOCAL,info));
143526fbe8dcSKarl Rupp 
1436a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1437a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1438a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1439a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1440a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1441a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1442a30f8f8cSSatish Balay     info->memory       = isend[3];
1443a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1444a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14451c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin)));
144626fbe8dcSKarl Rupp 
1447a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1448a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1449a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1450a30f8f8cSSatish Balay     info->memory       = irecv[3];
1451a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1452a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14531c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin)));
145426fbe8dcSKarl Rupp 
1455a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1456a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1457a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1458a30f8f8cSSatish Balay     info->memory       = irecv[3];
1459a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
146098921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1461a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1462a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1463a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1464a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1465a30f8f8cSSatish Balay }
1466a30f8f8cSSatish Balay 
1467ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1468a30f8f8cSSatish Balay {
1469a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1470d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1471a30f8f8cSSatish Balay 
1472a30f8f8cSSatish Balay   PetscFunctionBegin;
1473e98b92d7SKris Buschelman   switch (op) {
1474512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1475e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1477a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1478c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1479e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
148043674050SBarry Smith     MatCheckPreallocated(A,1);
14819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
14829566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
1483e98b92d7SKris Buschelman     break;
1484e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
148543674050SBarry Smith     MatCheckPreallocated(A,1);
14864e0d8c25SBarry Smith     a->roworiented = flg;
148726fbe8dcSKarl Rupp 
14889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
14899566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
1490e98b92d7SKris Buschelman     break;
14918c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1492071fcb05SBarry Smith   case MAT_SORTED_FULL:
14939566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
1494e98b92d7SKris Buschelman     break;
1495e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14964e0d8c25SBarry Smith     a->donotstash = flg;
1497e98b92d7SKris Buschelman     break;
1498e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
14994e0d8c25SBarry Smith     a->ht_flag = flg;
1500e98b92d7SKris Buschelman     break;
15019a4540c5SBarry Smith   case MAT_HERMITIAN:
150243674050SBarry Smith     MatCheckPreallocated(A,1);
15039566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
15040f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1505eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1506547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1507eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1508eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1509eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1510eb1ec7c1SStefano Zampini       A->symmetric = PETSC_FALSE;
1511eb1ec7c1SStefano Zampini     }
15120f2140c7SStefano Zampini #endif
1513eeffb40dSHong Zhang     break;
1514ffa07934SHong Zhang   case MAT_SPD:
151577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
151643674050SBarry Smith     MatCheckPreallocated(A,1);
15179566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
1518eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1519eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1520eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1521eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1522eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1523eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1524eb1ec7c1SStefano Zampini     }
1525eb1ec7c1SStefano Zampini #endif
1526eeffb40dSHong Zhang     break;
152777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
152843674050SBarry Smith     MatCheckPreallocated(A,1);
15299566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
1530eeffb40dSHong Zhang     break;
15319a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
15325f80ce2aSJacob Faibussowitsch     PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
15339566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
153477e54ba9SKris Buschelman     break;
1535d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15364e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1537d0d4cfc2SHong Zhang     break;
1538d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15394e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1540d0d4cfc2SHong Zhang     break;
1541d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15424e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1543d0d4cfc2SHong Zhang     break;
1544e98b92d7SKris Buschelman   default:
154598921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1546a30f8f8cSSatish Balay   }
1547a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1548a30f8f8cSSatish Balay }
1549a30f8f8cSSatish Balay 
1550fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1551a30f8f8cSSatish Balay {
1552a30f8f8cSSatish Balay   PetscFunctionBegin;
1553cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15549566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A,MAT_COPY_VALUES,B));
1555cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
15569566063dSJacob Faibussowitsch     PetscCall(MatCopy(A,*B,SAME_NONZERO_PATTERN));
1557fc4dec0aSBarry Smith   }
15588115998fSBarry Smith   PetscFunctionReturn(0);
1559a30f8f8cSSatish Balay }
1560a30f8f8cSSatish Balay 
1561dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1562a30f8f8cSSatish Balay {
1563a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1564a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
15655e90f9d9SHong Zhang   PetscInt       nv,m,n;
1566ace3abfcSBarry Smith   PetscBool      flg;
1567a30f8f8cSSatish Balay 
1568a30f8f8cSSatish Balay   PetscFunctionBegin;
1569a30f8f8cSSatish Balay   if (ll != rr) {
15709566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll,rr,&flg));
15715f80ce2aSJacob Faibussowitsch     PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same");
1572a30f8f8cSSatish Balay   }
1573b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1574b3bf805bSHong Zhang 
15759566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&m,&n));
15765f80ce2aSJacob Faibussowitsch   PetscCheck(m == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same",m,n);
1577b3bf805bSHong Zhang 
15789566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr,&nv));
15795f80ce2aSJacob Faibussowitsch   PetscCheck(nv==n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15805e90f9d9SHong Zhang 
15819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD));
15825e90f9d9SHong Zhang 
15835e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
15849566063dSJacob Faibussowitsch   PetscCall((*b->ops->diagonalscale)(b,ll,NULL));
15855e90f9d9SHong Zhang 
15865e90f9d9SHong Zhang   /* scale the diagonal part */
15879566063dSJacob Faibussowitsch   PetscCall((*a->ops->diagonalscale)(a,ll,rr));
1588a30f8f8cSSatish Balay 
15895e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
15909566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD));
15919566063dSJacob Faibussowitsch   PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec));
1592a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1593a30f8f8cSSatish Balay }
1594a30f8f8cSSatish Balay 
1595dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1596a30f8f8cSSatish Balay {
1597f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1598a30f8f8cSSatish Balay 
1599a30f8f8cSSatish Balay   PetscFunctionBegin;
16009566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
1601a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1602a30f8f8cSSatish Balay }
1603a30f8f8cSSatish Balay 
16046849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1605a30f8f8cSSatish Balay 
1606ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1607a30f8f8cSSatish Balay {
1608a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1609a30f8f8cSSatish Balay   Mat            a,b,c,d;
1610ace3abfcSBarry Smith   PetscBool      flg;
1611a30f8f8cSSatish Balay 
1612a30f8f8cSSatish Balay   PetscFunctionBegin;
1613a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1614a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1615a30f8f8cSSatish Balay 
16169566063dSJacob Faibussowitsch   PetscCall(MatEqual(a,c,&flg));
1617abc0a331SBarry Smith   if (flg) {
16189566063dSJacob Faibussowitsch     PetscCall(MatEqual(b,d,&flg));
1619a30f8f8cSSatish Balay   }
16201c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A)));
1621a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1622a30f8f8cSSatish Balay }
1623a30f8f8cSSatish Balay 
16243c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16253c896bc6SHong Zhang {
16264c7a3774SStefano Zampini   PetscBool      isbaij;
16273c896bc6SHong Zhang 
16283c896bc6SHong Zhang   PetscFunctionBegin;
16299566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,""));
16305f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
16313c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16323c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16339566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16349566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A,B,str));
16359566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16363c896bc6SHong Zhang   } else {
16374c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
16384c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
16394c7a3774SStefano Zampini 
16409566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A,b->A,str));
16419566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B,b->B,str));
16423c896bc6SHong Zhang   }
16439566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16443c896bc6SHong Zhang   PetscFunctionReturn(0);
16453c896bc6SHong Zhang }
16463c896bc6SHong Zhang 
16474994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1648273d9f13SBarry Smith {
1649273d9f13SBarry Smith   PetscFunctionBegin;
16509566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL));
1651273d9f13SBarry Smith   PetscFunctionReturn(0);
1652273d9f13SBarry Smith }
1653a5e6ed63SBarry Smith 
16544fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16554fe895cdSHong Zhang {
16564fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16574fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16584fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16594fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16604fe895cdSHong Zhang 
16614fe895cdSHong Zhang   PetscFunctionBegin;
16624fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16634fe895cdSHong Zhang     PetscScalar alpha = a;
16644fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16654fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
16669566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz,&bnz));
16678b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16684fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16694fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
16709566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz,&bnz));
16718b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
16729566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1673ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE));
16759566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y,a,X,str));
16769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE));
16774fe895cdSHong Zhang   } else {
16784de5dceeSHong Zhang     Mat      B;
16794de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
16805f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
16819566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16829566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d));
16849566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o));
16859566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B));
16869566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name));
16879566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B,Y,Y));
16899566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATMPISBAIJ));
16909566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d));
16919566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o));
16929566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o));
16939566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str));
16949566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y,&B));
16959566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
16969566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
16979566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
16989566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
16994fe895cdSHong Zhang   }
17004fe895cdSHong Zhang   PetscFunctionReturn(0);
17014fe895cdSHong Zhang }
17024fe895cdSHong Zhang 
17037dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1704a5e6ed63SBarry Smith {
17051302d50aSBarry Smith   PetscInt       i;
1706afebec48SHong Zhang   PetscBool      flg;
1707a5e6ed63SBarry Smith 
17086849ba73SBarry Smith   PetscFunctionBegin;
17099566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B)); /* B[] are sbaij matrices */
1710a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
17119566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i],icol[i],&flg));
1712afebec48SHong Zhang     if (!flg) {
17139566063dSJacob Faibussowitsch       PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
1714a5e6ed63SBarry Smith     }
17154dcd73b1SHong Zhang   }
1716a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1717a5e6ed63SBarry Smith }
1718a5e6ed63SBarry Smith 
17197d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17207d68702bSBarry Smith {
17217d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17226f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17237d68702bSBarry Smith 
17247d68702bSBarry Smith   PetscFunctionBegin;
17256f33a894SBarry Smith   if (!Y->preallocated) {
17269566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL));
17276f33a894SBarry Smith   } else if (!aij->nz) {
1728b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17299566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL));
1730b83222d8SBarry Smith     aij->nonew = nonew;
17317d68702bSBarry Smith   }
17329566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y,a));
17337d68702bSBarry Smith   PetscFunctionReturn(0);
17347d68702bSBarry Smith }
17357d68702bSBarry Smith 
17363b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
17373b49f96aSBarry Smith {
17383b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
17393b49f96aSBarry Smith 
17403b49f96aSBarry Smith   PetscFunctionBegin;
17415f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
17429566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A,missing,d));
17433b49f96aSBarry Smith   if (d) {
17443b49f96aSBarry Smith     PetscInt rstart;
17459566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A,&rstart,NULL));
17463b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
17473b49f96aSBarry Smith 
17483b49f96aSBarry Smith   }
17493b49f96aSBarry Smith   PetscFunctionReturn(0);
17503b49f96aSBarry Smith }
17513b49f96aSBarry Smith 
1752a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1753a5b7ff6bSBarry Smith {
1754a5b7ff6bSBarry Smith   PetscFunctionBegin;
1755a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1756a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1757a5b7ff6bSBarry Smith }
17583b49f96aSBarry Smith 
1759a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17603964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1761a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1762a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1763a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
176497304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1765431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1766431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1767f4259b30SLisandro Dalcin                                        NULL,
1768f4259b30SLisandro Dalcin                                        NULL,
1769f4259b30SLisandro Dalcin                                        NULL,
1770f4259b30SLisandro Dalcin                                /* 10*/ NULL,
1771f4259b30SLisandro Dalcin                                        NULL,
1772f4259b30SLisandro Dalcin                                        NULL,
177341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1774a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
177597304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1776a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1777a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1778a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1779a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
178097304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1781a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1782a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1783a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1784f4259b30SLisandro Dalcin                                /* 24*/ NULL,
1785f4259b30SLisandro Dalcin                                        NULL,
1786f4259b30SLisandro Dalcin                                        NULL,
1787f4259b30SLisandro Dalcin                                        NULL,
1788f4259b30SLisandro Dalcin                                        NULL,
17894994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1790f4259b30SLisandro Dalcin                                        NULL,
1791f4259b30SLisandro Dalcin                                        NULL,
1792a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1793f4259b30SLisandro Dalcin                                        NULL,
1794d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1795f4259b30SLisandro Dalcin                                        NULL,
1796f4259b30SLisandro Dalcin                                        NULL,
1797f4259b30SLisandro Dalcin                                        NULL,
1798f4259b30SLisandro Dalcin                                        NULL,
1799d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
18007dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1801d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1802a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18033c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1804f4259b30SLisandro Dalcin                                /* 44*/ NULL,
1805a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18067d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1807f4259b30SLisandro Dalcin                                        NULL,
1808f4259b30SLisandro Dalcin                                        NULL,
1809f4259b30SLisandro Dalcin                                /* 49*/ NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
1814f4259b30SLisandro Dalcin                                /* 54*/ NULL,
1815f4259b30SLisandro Dalcin                                        NULL,
1816a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1817f4259b30SLisandro Dalcin                                        NULL,
1818a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18197dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1820f4259b30SLisandro Dalcin                                        NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                        NULL,
1823f4259b30SLisandro Dalcin                                        NULL,
1824f4259b30SLisandro Dalcin                                /* 64*/ NULL,
1825f4259b30SLisandro Dalcin                                        NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1830f4259b30SLisandro Dalcin                                        NULL,
183128d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                /* 74*/ NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
1839f4259b30SLisandro Dalcin                                /* 79*/ NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
18435bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1844f4259b30SLisandro Dalcin                                /* 84*/ NULL,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        NULL,
1847f4259b30SLisandro Dalcin                                        NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
1849f4259b30SLisandro Dalcin                                /* 89*/ NULL,
1850f4259b30SLisandro Dalcin                                        NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                /* 94*/ NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                        NULL,
1859f4259b30SLisandro Dalcin                                /* 99*/ NULL,
1860f4259b30SLisandro Dalcin                                        NULL,
1861f4259b30SLisandro Dalcin                                        NULL,
18622726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1863f4259b30SLisandro Dalcin                                        NULL,
1864f4259b30SLisandro Dalcin                                /*104*/ NULL,
186599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1866d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1867d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
186895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1869f4259b30SLisandro Dalcin                                /*109*/ NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
18733b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1874f4259b30SLisandro Dalcin                                /*114*/ NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                /*119*/ NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                /*124*/ NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                        NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                /*129*/ NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                /*134*/ NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        NULL,
189946533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904d70f29a3SPierre Jolivet                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1905d70f29a3SPierre Jolivet                                        NULL,
1906d70f29a3SPierre Jolivet                                        NULL,
1907d70f29a3SPierre Jolivet                                        NULL
190899cafbc1SBarry Smith };
1909a30f8f8cSSatish Balay 
1910b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1911a23d5eceSKris Buschelman {
1912476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
1913535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
19145d2a9ed1SStefano Zampini   PetscMPIInt    size;
1915a23d5eceSKris Buschelman 
1916a23d5eceSKris Buschelman   PetscFunctionBegin;
19179566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B,PetscAbs(bs)));
19189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19199566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19209566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
19215f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->N,B->cmap->N);
19225f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->n,B->cmap->n);
1923899cda47SBarry Smith 
1924d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1925d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
19265f80ce2aSJacob Faibussowitsch   PetscCheck(mbs*bs == B->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT,B->rmap->N,bs);
1927a23d5eceSKris Buschelman 
1928d0f46423SBarry Smith   B->rmap->bs = bs;
1929a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1930a23d5eceSKris Buschelman   b->mbs      = mbs;
1931a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1932de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1933de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1934a23d5eceSKris Buschelman 
1935a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1936d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1937a23d5eceSKris Buschelman   }
1938d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1939d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1940a23d5eceSKris Buschelman 
1941d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1942d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1943a23d5eceSKris Buschelman 
1944cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
19459566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&b->colmap));
1946cb7b82ddSBarry Smith #else
19479566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1948cb7b82ddSBarry Smith #endif
19499566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
19509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
19519566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
19529566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
19539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
19549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
19559566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
19569566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
19579566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1958cb7b82ddSBarry Smith 
1959cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
19609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size));
19619566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19629566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&b->B));
19639566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0));
19649566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B,MATSEQBAIJ));
19659566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B));
1966cb7b82ddSBarry Smith 
1967526dfc15SBarry Smith   if (!B->preallocated) {
19689566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF,&b->A));
19699566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n));
19709566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A,MATSEQSBAIJ));
19719566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A));
19729566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash));
1973526dfc15SBarry Smith   }
1974a23d5eceSKris Buschelman 
19759566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz));
19769566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz));
197726fbe8dcSKarl Rupp 
1978526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
1979cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
1980cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
1981a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1982a23d5eceSKris Buschelman }
1983a23d5eceSKris Buschelman 
1984dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1985dfb205c3SBarry Smith {
198602106b30SBarry Smith   PetscInt       m,rstart,cend;
1987f4259b30SLisandro Dalcin   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL;
1988f4259b30SLisandro Dalcin   const PetscInt *JJ    =NULL;
1989f4259b30SLisandro Dalcin   PetscScalar    *values=NULL;
1990bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
19913bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
1992dfb205c3SBarry Smith 
1993dfb205c3SBarry Smith   PetscFunctionBegin;
19945f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1,PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %" PetscInt_FMT,bs);
19959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap,bs));
19969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap,bs));
19979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
2000dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2001dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2002dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2003dfb205c3SBarry Smith 
20045f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]);
20059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz));
2006dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2007dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
20085f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz);
20090cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2010dfb205c3SBarry Smith     JJ     = jj + ii[i];
20110cd7f59aSBarry Smith     bd     = 0;
2012dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
20130cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2014dfb205c3SBarry Smith       JJ++;
20150cd7f59aSBarry Smith       bd++;
2016dfb205c3SBarry Smith     }
2017dfb205c3SBarry Smith     d  = 0;
2018dfb205c3SBarry Smith     for (; j<nz; j++) {
2019dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2020dfb205c3SBarry Smith       d++;
2021dfb205c3SBarry Smith     }
2022dfb205c3SBarry Smith     d_nnz[i] = d;
20230cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20240cd7f59aSBarry Smith     nz       = nz - bd;
20250cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2026dfb205c3SBarry Smith   }
20279566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz));
20289566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE));
20299566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz,o_nnz));
2030dfb205c3SBarry Smith 
2031dfb205c3SBarry Smith   values = (PetscScalar*)V;
2032dfb205c3SBarry Smith   if (!values) {
20339566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(bs*bs*nz_max,&values));
2034dfb205c3SBarry Smith   }
2035dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2036dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2037dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2038dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2039bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2040dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
20419566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES));
2042bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2043bb80cfbbSStefano Zampini       PetscInt j;
20440cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
20450cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
20469566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES));
20470cd7f59aSBarry Smith       }
20480cd7f59aSBarry Smith     }
2049dfb205c3SBarry Smith   }
2050dfb205c3SBarry Smith 
20519566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
20523bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20533bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
20549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
20559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
20563bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20573bd0feecSPierre Jolivet 
20589566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
2059dfb205c3SBarry Smith   PetscFunctionReturn(0);
2060dfb205c3SBarry Smith }
2061dfb205c3SBarry Smith 
20620bad9183SKris Buschelman /*MC
2063fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2064828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2065828413b8SBarry Smith    the matrix is stored.
2066828413b8SBarry Smith 
2067828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2068828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
20690bad9183SKris Buschelman 
20700bad9183SKris Buschelman    Options Database Keys:
20710bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20720bad9183SKris Buschelman 
2073476417e5SBarry Smith    Notes:
2074476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2075476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2076476417e5SBarry Smith 
20770bad9183SKris Buschelman    Level: beginner
20780bad9183SKris Buschelman 
2079fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType
20800bad9183SKris Buschelman M*/
20810bad9183SKris Buschelman 
20828cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2083b5df2d14SHong Zhang {
2084b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
208594ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2086b5df2d14SHong Zhang 
2087b5df2d14SHong Zhang   PetscFunctionBegin;
20889566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B,&b));
2089b0a32e0cSBarry Smith   B->data = (void*)b;
20909566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps)));
2091b5df2d14SHong Zhang 
2092b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2093b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2094b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2095b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
209626fbe8dcSKarl Rupp 
20979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank));
20989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size));
2099b5df2d14SHong Zhang 
2100b5df2d14SHong Zhang   /* build local table of row and column ownerships */
21019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size+2,&b->rangebs));
2102b5df2d14SHong Zhang 
2103b5df2d14SHong Zhang   /* build cache for off array entries formed */
21049566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash));
210526fbe8dcSKarl Rupp 
2106b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21070298fd71SBarry Smith   b->colmap      = NULL;
21080298fd71SBarry Smith   b->garray      = NULL;
2109b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2110b5df2d14SHong Zhang 
2111b5df2d14SHong Zhang   /* stuff used in block assembly */
2112f4259b30SLisandro Dalcin   b->barray = NULL;
2113b5df2d14SHong Zhang 
2114b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2115f4259b30SLisandro Dalcin   b->lvec    = NULL;
2116f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2117f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2118f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2119f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2120f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2121f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2122f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2123b5df2d14SHong Zhang 
2124b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2125f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2126f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2127b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2128b5df2d14SHong Zhang 
2129b5df2d14SHong Zhang   /* hash table stuff */
2130f4259b30SLisandro Dalcin   b->ht           = NULL;
2131f4259b30SLisandro Dalcin   b->hd           = NULL;
2132b5df2d14SHong Zhang   b->ht_size      = 0;
2133b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2134b5df2d14SHong Zhang   b->ht_fact      = 0;
2135b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2136b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2137b5df2d14SHong Zhang 
21387dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21397a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21407a868f3eSHong Zhang 
2141f4259b30SLisandro Dalcin   b->in_loc = NULL;
2142f4259b30SLisandro Dalcin   b->v_loc  = NULL;
214359ffdab8SBarry Smith   b->n_loc  = 0;
214494ae4db5SBarry Smith 
21459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ));
21469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ));
21479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ));
21489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21496214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental));
21516214f412SHong Zhang #endif
2152d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
21539566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK));
2154d24d4204SJose E. Roman #endif
21559566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic));
21569566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic));
2157aa5a9175SDahai Guo 
215823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
215923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
216023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
216123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
21629899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
2163eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
216413647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
216513647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
2166eb1ec7c1SStefano Zampini #else
2167eb1ec7c1SStefano Zampini   B->hermitian                  = PETSC_TRUE;
2168eb1ec7c1SStefano Zampini   B->hermitian_set              = PETSC_TRUE;
2169eb1ec7c1SStefano Zampini #endif
217013647f61SHong Zhang 
21719566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ));
2172*d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");
21739566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL));
217494ae4db5SBarry Smith   if (flg) {
217594ae4db5SBarry Smith     PetscReal fact = 1.39;
21769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE));
21779566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL));
217894ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
21799566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B,fact));
21809566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact));
218194ae4db5SBarry Smith   }
2182*d0609cedSBarry Smith   PetscOptionsEnd();
2183b5df2d14SHong Zhang   PetscFunctionReturn(0);
2184b5df2d14SHong Zhang }
2185b5df2d14SHong Zhang 
2186209238afSKris Buschelman /*MC
2187002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2188209238afSKris Buschelman 
2189209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2190209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2191209238afSKris Buschelman 
2192209238afSKris Buschelman    Options Database Keys:
2193209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2194209238afSKris Buschelman 
2195209238afSKris Buschelman   Level: beginner
2196209238afSKris Buschelman 
219706946f3aSJose E. Roman .seealso: MatCreateSBAIJ, MATSEQSBAIJ, MATMPISBAIJ
2198209238afSKris Buschelman M*/
2199209238afSKris Buschelman 
2200b5df2d14SHong Zhang /*@C
2201b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2202b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2203b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2204b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2205b5df2d14SHong Zhang 
2206b5df2d14SHong Zhang    Collective on Mat
2207b5df2d14SHong Zhang 
2208b5df2d14SHong Zhang    Input Parameters:
22091c4f3114SJed Brown +  B - the matrix
2210bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2211bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2212b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2213b5df2d14SHong Zhang            submatrix  (same for all local rows)
2214b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
22156d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22160298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
221795742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2218b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2219b5df2d14SHong Zhang            submatrix (same for all local rows).
2220b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2221c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22220298fd71SBarry Smith            (possibly different for each block row) or NULL.
2223b5df2d14SHong Zhang 
2224b5df2d14SHong Zhang    Options Database Keys:
2225a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2226b5df2d14SHong Zhang                      block calculations (much slower)
2227a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2228b5df2d14SHong Zhang 
2229b5df2d14SHong Zhang    Notes:
2230b5df2d14SHong Zhang 
2231b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2232b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2233b5df2d14SHong Zhang 
223449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
223549a6f317SBarry Smith 
2236b5df2d14SHong Zhang    Storage Information:
2237b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2238b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2239b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2240b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2241b5df2d14SHong Zhang 
2242b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2243b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
22440298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2245b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2246b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2247b5df2d14SHong Zhang 
2248aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2249aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2250aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2251aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2252aa95bbe8SBarry Smith 
2253b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2254b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2255b5df2d14SHong Zhang 
2256b5df2d14SHong Zhang .vb
2257b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2258a4b1a0f6SJed Brown           --------------------------
2259c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2260c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2261c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2262a4b1a0f6SJed Brown           --------------------------
2263b5df2d14SHong Zhang .ve
2264b5df2d14SHong Zhang 
2265b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2266b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22676d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22686d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2269b5df2d14SHong Zhang 
22706d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22716d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2272c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2273c2fc9fa9SBarry Smith 
2274b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2275b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2276b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2277b5df2d14SHong Zhang    matrices.
2278b5df2d14SHong Zhang 
2279b5df2d14SHong Zhang    Level: intermediate
2280b5df2d14SHong Zhang 
2281ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2282b5df2d14SHong Zhang @*/
22837087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2284b5df2d14SHong Zhang {
2285b5df2d14SHong Zhang   PetscFunctionBegin;
22866ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22876ba663aaSJed Brown   PetscValidType(B,1);
22886ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
2289cac4c232SBarry Smith   PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));
2290b5df2d14SHong Zhang   PetscFunctionReturn(0);
2291b5df2d14SHong Zhang }
2292b5df2d14SHong Zhang 
2293a30f8f8cSSatish Balay /*@C
229469b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2295a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2296a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2297a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2298a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2299a30f8f8cSSatish Balay 
2300d083f849SBarry Smith    Collective
2301a30f8f8cSSatish Balay 
2302a30f8f8cSSatish Balay    Input Parameters:
2303a30f8f8cSSatish Balay +  comm - MPI communicator
2304bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2305bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2306a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2307a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2308a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2309a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2310a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2311a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2312a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2313a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2314a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2315a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2316a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
23176d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23180298fd71SBarry Smith            (possibly different for each block block row) or NULL.
231995742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
232095742e49SBarry Smith            set its value even if it is zero.
2321a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2322a30f8f8cSSatish Balay            submatrix (same for all local rows).
2323a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2324a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23250298fd71SBarry Smith            each block row) or NULL.
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay    Output Parameter:
2328a30f8f8cSSatish Balay .  A - the matrix
2329a30f8f8cSSatish Balay 
2330a30f8f8cSSatish Balay    Options Database Keys:
2331a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2332a30f8f8cSSatish Balay                      block calculations (much slower)
2333a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2334a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2335a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2336a30f8f8cSSatish Balay 
2337175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2338f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2339175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2340175b88e8SBarry Smith 
2341a30f8f8cSSatish Balay    Notes:
2342d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23436d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2344d1be2dadSMatthew Knepley 
2345a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2346a30f8f8cSSatish Balay    (possibly both).
2347a30f8f8cSSatish Balay 
2348a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2349a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2350a30f8f8cSSatish Balay 
235149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
235249a6f317SBarry Smith 
2353a30f8f8cSSatish Balay    Storage Information:
2354a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2355a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2356a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2357a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2358a30f8f8cSSatish Balay 
2359a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2360a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
23610298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2362a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2363a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2364a30f8f8cSSatish Balay 
2365a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2366a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2367a30f8f8cSSatish Balay 
2368a30f8f8cSSatish Balay .vb
2369a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2370a4b1a0f6SJed Brown           --------------------------
2371c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2372c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2373c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2374a4b1a0f6SJed Brown           --------------------------
2375a30f8f8cSSatish Balay .ve
2376a30f8f8cSSatish Balay 
2377a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2378a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23796d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23806d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2381a30f8f8cSSatish Balay 
23826d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23836d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2384a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2385a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2386a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2387a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2388a30f8f8cSSatish Balay    matrices.
2389a30f8f8cSSatish Balay 
2390a30f8f8cSSatish Balay    Level: intermediate
2391a30f8f8cSSatish Balay 
239269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2393a30f8f8cSSatish Balay @*/
2394a30f8f8cSSatish Balay 
239569b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2396a30f8f8cSSatish Balay {
23971302d50aSBarry Smith   PetscMPIInt    size;
2398a30f8f8cSSatish Balay 
2399a30f8f8cSSatish Balay   PetscFunctionBegin;
24009566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,A));
24019566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A,m,n,M,N));
24029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
2403273d9f13SBarry Smith   if (size > 1) {
24049566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATMPISBAIJ));
24059566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz));
2406273d9f13SBarry Smith   } else {
24079566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATSEQSBAIJ));
24089566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz));
2409273d9f13SBarry Smith   }
2410a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2411a30f8f8cSSatish Balay }
2412a30f8f8cSSatish Balay 
24136849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2414a30f8f8cSSatish Balay {
2415a30f8f8cSSatish Balay   Mat            mat;
2416a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2417d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2418387bc808SHong Zhang   PetscScalar    *array;
2419a30f8f8cSSatish Balay 
2420a30f8f8cSSatish Balay   PetscFunctionBegin;
2421f4259b30SLisandro Dalcin   *newmat = NULL;
242226fbe8dcSKarl Rupp 
24239566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat));
24249566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N));
24259566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat,((PetscObject)matin)->type_name));
24269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap));
24279566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap));
2428e1b6402fSHong Zhang 
2429d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2430273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
243182327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24327fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24337fff6886SHong Zhang 
2434b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2435a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2436a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2437a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2438a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2439a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2440a30f8f8cSSatish Balay 
2441a30f8f8cSSatish Balay   a->size         = oldmat->size;
2442a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2443a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2444a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2445f4259b30SLisandro Dalcin   a->rowindices   = NULL;
2446f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
2447a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2448f4259b30SLisandro Dalcin   a->barray       = NULL;
2449899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2450899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2451899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2452899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2453a30f8f8cSSatish Balay 
2454a30f8f8cSSatish Balay   /* hash table stuff */
2455f4259b30SLisandro Dalcin   a->ht           = NULL;
2456f4259b30SLisandro Dalcin   a->hd           = NULL;
2457a30f8f8cSSatish Balay   a->ht_size      = 0;
2458a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2459a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2460a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2461a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2462a30f8f8cSSatish Balay 
24639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2));
2464a30f8f8cSSatish Balay   if (oldmat->colmap) {
2465a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
24669566063dSJacob Faibussowitsch     PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap));
2467a30f8f8cSSatish Balay #else
24689566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs,&a->colmap));
24699566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt)));
24709566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs));
2471a30f8f8cSSatish Balay #endif
2472f4259b30SLisandro Dalcin   } else a->colmap = NULL;
2473387bc808SHong Zhang 
2474a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
24759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len,&a->garray));
24769566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt)));
24779566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray,oldmat->garray,len));
2478f4259b30SLisandro Dalcin   } else a->garray = NULL;
2479a30f8f8cSSatish Balay 
24809566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash));
24819566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec,&a->lvec));
24829566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec));
24839566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx));
24849566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx));
248582327fa8SHong Zhang 
24869566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec0,&a->slvec0));
24879566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0));
24889566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec1,&a->slvec1));
24899566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1));
2490387bc808SHong Zhang 
24919566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(a->slvec1,&nt));
24929566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec1,&array));
24939566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a));
24949566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b));
24959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec1,&array));
24969566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0,&array));
24979566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b));
24989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0,&array));
24999566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0));
25009566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1));
25019566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b));
25029566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a));
25039566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b));
2504387bc808SHong Zhang 
2505387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
25069566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2507387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
25089566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx));
250982327fa8SHong Zhang 
25109566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A));
25119566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A));
25129566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B));
25139566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B));
25149566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist));
2515a30f8f8cSSatish Balay   *newmat = mat;
2516a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2517a30f8f8cSSatish Balay }
2518a30f8f8cSSatish Balay 
2519618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2520618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2521618cc2edSLisandro Dalcin 
2522618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer)
252395936485SShri Abhyankar {
25247f489da9SVaclav Hapla   PetscBool      isbinary;
252595936485SShri Abhyankar 
252695936485SShri Abhyankar   PetscFunctionBegin;
25279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
25285f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
25299566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat,viewer));
253095936485SShri Abhyankar   PetscFunctionReturn(0);
253195936485SShri Abhyankar }
253295936485SShri Abhyankar 
2533dcf5cc72SBarry Smith /*XXXXX@
2534a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2535a30f8f8cSSatish Balay 
2536a30f8f8cSSatish Balay    Input Parameters:
2537a30f8f8cSSatish Balay .  mat  - the matrix
2538a30f8f8cSSatish Balay .  fact - factor
2539a30f8f8cSSatish Balay 
2540c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2541a30f8f8cSSatish Balay 
2542a30f8f8cSSatish Balay    Level: advanced
2543a30f8f8cSSatish Balay 
2544a30f8f8cSSatish Balay   Notes:
2545a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2546a30f8f8cSSatish Balay 
2547a30f8f8cSSatish Balay .seealso: MatSetOption()
2548dcf5cc72SBarry Smith @XXXXX*/
2549dcf5cc72SBarry Smith 
2550985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
255124d5174aSHong Zhang {
255224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2553f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2554ca54ac64SHong Zhang   PetscReal      atmp;
255587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
25561302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25571302d50aSBarry Smith   PetscMPIInt    rank,size;
25581302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
255987828ca2SBarry Smith   PetscScalar    *va;
25608a1c53f2SBarry Smith   MatScalar      *ba;
2561f4c0e9e4SHong Zhang   MPI_Status     stat;
256224d5174aSHong Zhang 
256324d5174aSHong Zhang   PetscFunctionBegin;
25645f80ce2aSJacob Faibussowitsch   PetscCheck(!idx,PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
25659566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A,v,NULL));
25669566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v,&va));
2567f4c0e9e4SHong Zhang 
25689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size));
25699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank));
2570f4c0e9e4SHong Zhang 
2571d0f46423SBarry Smith   bs  = A->rmap->bs;
2572f4c0e9e4SHong Zhang   mbs = a->mbs;
2573f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2574f4c0e9e4SHong Zhang   ba  = b->a;
2575f4c0e9e4SHong Zhang   bi  = b->i;
2576f4c0e9e4SHong Zhang   bj  = b->j;
2577f4c0e9e4SHong Zhang 
2578f4c0e9e4SHong Zhang   /* find ownerships */
2579d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2580f4c0e9e4SHong Zhang 
2581f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs*Mbs,&work));
2583f4c0e9e4SHong Zhang 
2584f4c0e9e4SHong Zhang   /* row_max for B */
2585b8475685SHong Zhang   if (rank != size-1) {
2586f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2587f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2588f4c0e9e4SHong Zhang       brow  = bs*i;
2589f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2590f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2591f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2592ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
259304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2594f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2595f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2596ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2597ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2598f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2599f4c0e9e4SHong Zhang           }
2600f4c0e9e4SHong Zhang         }
2601f4c0e9e4SHong Zhang         bj++;
2602f4c0e9e4SHong Zhang       }
2603f4c0e9e4SHong Zhang     }
2604f4c0e9e4SHong Zhang 
2605f4c0e9e4SHong Zhang     /* send values to its owners */
2606f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2607f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2608ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
26099566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A)));
2610ca54ac64SHong Zhang     }
2611f4c0e9e4SHong Zhang   }
2612f4c0e9e4SHong Zhang 
2613f4c0e9e4SHong Zhang   /* receive values */
2614ca54ac64SHong Zhang   if (rank) {
2615f4c0e9e4SHong Zhang     rvalues = work;
2616ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2617f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
26189566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat));
2619f4c0e9e4SHong Zhang       /* process values */
2620f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2621ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2622f4c0e9e4SHong Zhang       }
2623f4c0e9e4SHong Zhang     }
2624ca54ac64SHong Zhang   }
2625f4c0e9e4SHong Zhang 
26269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v,&va));
26279566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
262824d5174aSHong Zhang   PetscFunctionReturn(0);
262924d5174aSHong Zhang }
26302798e883SHong Zhang 
263141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26322798e883SHong Zhang {
26332798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2634d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26353649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2636ffe4fb16SHong Zhang   Vec               bb1;
26373649974fSBarry Smith   const PetscScalar *b;
2638ffe4fb16SHong Zhang 
2639ffe4fb16SHong Zhang   PetscFunctionBegin;
26405f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits);
26415f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2642ffe4fb16SHong Zhang 
2643a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26449566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2645a2b30743SBarry Smith     PetscFunctionReturn(0);
2646a2b30743SBarry Smith   }
2647a2b30743SBarry Smith 
2648ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2649ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26509566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx));
2651ffe4fb16SHong Zhang       its--;
2652ffe4fb16SHong Zhang     }
2653ffe4fb16SHong Zhang 
26549566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb,&bb1));
2655ffe4fb16SHong Zhang     while (its--) {
2656ffe4fb16SHong Zhang 
2657ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26589566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b));
2659ffe4fb16SHong Zhang 
2660ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26619566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0,&ptr));
26629566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx,&x));
26639566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr,x,bs*mbs));
26649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0,&ptr));
2665ffe4fb16SHong Zhang 
26669566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0,-1.0));
2667ffe4fb16SHong Zhang 
2668ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26699566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1,&ptr));
26709566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb,&b));
26719566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr,b,bs*mbs));
26729566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1,&ptr));
2673ffe4fb16SHong Zhang 
2674ffe4fb16SHong Zhang       /* set slvec1b = 0 */
26759566063dSJacob Faibussowitsch       PetscCall(VecSet(mat->slvec1b,0.0));
2676ffe4fb16SHong Zhang 
26779566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD));
26789566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx,&x));
26799566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb,&b));
26809566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD));
2681ffe4fb16SHong Zhang 
2682ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26839566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1));
2684ffe4fb16SHong Zhang 
2685ffe4fb16SHong Zhang       /* local diagonal sweep */
26869566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx));
2687ffe4fb16SHong Zhang     }
26889566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2689fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26909566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2691fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26929566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2693fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2694fa22f6d0SBarry Smith     Vec               xx1;
2695ace3abfcSBarry Smith     PetscBool         hasop;
269620f1ed55SBarry Smith     const PetscScalar *diag;
2697887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
269820f1ed55SBarry Smith     PetscInt          i,n;
2699fa22f6d0SBarry Smith 
2700fa22f6d0SBarry Smith     if (!mat->xx1) {
27019566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb,&mat->xx1));
27029566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb,&mat->bb1));
2703fa22f6d0SBarry Smith     }
2704fa22f6d0SBarry Smith     xx1 = mat->xx1;
2705fa22f6d0SBarry Smith     bb1 = mat->bb1;
2706fa22f6d0SBarry Smith 
27079566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx));
2708fa22f6d0SBarry Smith 
2709fa22f6d0SBarry Smith     if (!mat->diag) {
2710effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27119566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin,&mat->diag,NULL));
27129566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin,mat->diag));
2713fa22f6d0SBarry Smith     }
27149566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop));
2715fa22f6d0SBarry Smith 
2716fa22f6d0SBarry Smith     if (hasop) {
27179566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin,xx,bb1));
27189566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
271920f1ed55SBarry Smith     } else {
272020f1ed55SBarry Smith       /*
272120f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
27229566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
27239566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
272420f1ed55SBarry Smith       */
27259566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a,&sl));
27269566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag,&diag));
27279566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb,&b));
27289566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx,&x));
27299566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx,&n));
2730887ee2caSBarry Smith       if (omega == 1.0) {
273126fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
27329566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0*n));
2733887ee2caSBarry Smith       } else {
273426fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
27359566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0*n));
2736887ee2caSBarry Smith       }
27379566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a,&sl));
27389566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag,&diag));
27399566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb,&b));
27409566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx,&x));
274120f1ed55SBarry Smith     }
2742fa22f6d0SBarry Smith 
2743fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
27449566063dSJacob Faibussowitsch     PetscCall(VecSet(mat->slvec1b,0.0));
27459566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b));
27469566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0,&from));
27479566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx,&x));
27489566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from,x,bs*mbs));
27499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0,&from));
27509566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx,&x));
27519566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD));
27529566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD));
27539566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a));
2754fa22f6d0SBarry Smith 
2755fa22f6d0SBarry Smith     /* local sweep */
27569566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1));
27579566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx,1.0,xx1));
2758f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2759ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2760ffe4fb16SHong Zhang }
2761ffe4fb16SHong Zhang 
2762dfb205c3SBarry Smith /*@
2763dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2764dfb205c3SBarry Smith          CSR format the local rows.
2765dfb205c3SBarry Smith 
2766d083f849SBarry Smith    Collective
2767dfb205c3SBarry Smith 
2768dfb205c3SBarry Smith    Input Parameters:
2769dfb205c3SBarry Smith +  comm - MPI communicator
2770dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2771dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2772dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2773dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2774dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2775dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2776dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2777483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2778dfb205c3SBarry Smith .   j - column indices
2779dfb205c3SBarry Smith -   a - matrix values
2780dfb205c3SBarry Smith 
2781dfb205c3SBarry Smith    Output Parameter:
2782dfb205c3SBarry Smith .   mat - the matrix
2783dfb205c3SBarry Smith 
2784dfb205c3SBarry Smith    Level: intermediate
2785dfb205c3SBarry Smith 
2786dfb205c3SBarry Smith    Notes:
2787dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2788dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2789dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2790dfb205c3SBarry Smith 
2791dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2792dfb205c3SBarry Smith 
2793dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
279469b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2795dfb205c3SBarry Smith @*/
27967087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2797dfb205c3SBarry Smith {
2798dfb205c3SBarry Smith   PetscFunctionBegin;
27995f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
28005f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
28019566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,mat));
28029566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat,m,n,M,N));
28039566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat,MATMPISBAIJ));
28049566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a));
2805dfb205c3SBarry Smith   PetscFunctionReturn(0);
2806dfb205c3SBarry Smith }
2807dfb205c3SBarry Smith 
2808dfb205c3SBarry Smith /*@C
2809664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
2810dfb205c3SBarry Smith 
2811d083f849SBarry Smith    Collective
2812dfb205c3SBarry Smith 
2813dfb205c3SBarry Smith    Input Parameters:
28141c4f3114SJed Brown +  B - the matrix
2815dfb205c3SBarry Smith .  bs - the block size
2816dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2817dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2818dfb205c3SBarry Smith -  v - optional values in the matrix
2819dfb205c3SBarry Smith 
2820664954b6SBarry Smith    Level: advanced
2821664954b6SBarry Smith 
2822664954b6SBarry Smith    Notes:
28230cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28240cd7f59aSBarry Smith    and usually the numerical values as well
28250cd7f59aSBarry Smith 
282650c5228eSBarry Smith    Any entries below the diagonal are ignored
2827dfb205c3SBarry Smith 
282869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2829dfb205c3SBarry Smith @*/
28307087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2831dfb205c3SBarry Smith {
2832dfb205c3SBarry Smith   PetscFunctionBegin;
2833cac4c232SBarry Smith   PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));
2834dfb205c3SBarry Smith   PetscFunctionReturn(0);
2835dfb205c3SBarry Smith }
2836dfb205c3SBarry Smith 
283710c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28384dcd73b1SHong Zhang {
283910c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
284010c56fdeSHong Zhang   PetscInt       *indx;
284110c56fdeSHong Zhang   PetscScalar    *values;
2842dfb205c3SBarry Smith 
28434dcd73b1SHong Zhang   PetscFunctionBegin;
28449566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat,&m,&N));
284510c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
284610c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
2847de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
284810c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
2849de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
28504dcd73b1SHong Zhang 
28519566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat,&bs,&cbs));
285210c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
285310c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
28549566063dSJacob Faibussowitsch       PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N));
285510c56fdeSHong Zhang     }
2856da91a574SPierre Jolivet     nbs = n/cbs;
28574dcd73b1SHong Zhang 
28589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax,&bindx));
2859*d0609cedSBarry Smith     MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */
2860de25e9cbSPierre Jolivet 
28619566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm,&rank));
28629566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm,&size));
2863de25e9cbSPierre Jolivet     if (rank == size-1) {
2864de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28655f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs);
2866de25e9cbSPierre Jolivet     }
2867de25e9cbSPierre Jolivet 
2868*d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE));
287010c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
28719566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */
28724dcd73b1SHong Zhang       nnz  = nnz/bs;
28734dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
28749566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz));
28759566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL));
28764dcd73b1SHong Zhang     }
28779566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE));
28789566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28794dcd73b1SHong Zhang 
28809566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm,outmat));
28819566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE));
28829566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat,bs,cbs));
28839566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat,MATSBAIJ));
28849566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz));
28859566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz));
2886*d0609cedSBarry Smith     MatPreallocateEnd(dnz,onz);
28874dcd73b1SHong Zhang   }
28884dcd73b1SHong Zhang 
288910c56fdeSHong Zhang   /* numeric phase */
28909566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat,&bs,&cbs));
28919566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL));
28924dcd73b1SHong Zhang 
28939566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE));
28944dcd73b1SHong Zhang   for (i=0; i<m; i++) {
28959566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values));
28964dcd73b1SHong Zhang     Ii   = i + rstart;
28979566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES));
28989566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values));
28994dcd73b1SHong Zhang   }
29009566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE));
29019566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY));
29029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY));
29034dcd73b1SHong Zhang   PetscFunctionReturn(0);
29044dcd73b1SHong Zhang }
2905