1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \ 104a30f8f8cSSatish Balay N = nrow++ - 1; \ 105a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 106a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 107a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 108a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 111a30f8f8cSSatish Balay rp[_i] = bcol; \ 112a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 113a30f8f8cSSatish Balay a_noinsert:; \ 114a30f8f8cSSatish Balay ailen[brow] = nrow; \ 115a30f8f8cSSatish Balay } 116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 117a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 118a30f8f8cSSatish Balay { \ 119a30f8f8cSSatish Balay brow = row/bs; \ 120a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 121a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 122a30f8f8cSSatish Balay bcol = col/bs; \ 123a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 124a30f8f8cSSatish Balay low = 0; high = nrow; \ 125a30f8f8cSSatish Balay while (high-low > 3) { \ 126a30f8f8cSSatish Balay t = (low+high)/2; \ 127a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 128a30f8f8cSSatish Balay else low = t; \ 129a30f8f8cSSatish Balay } \ 130a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 131a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 132a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 133a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 134a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 135a30f8f8cSSatish Balay else *bap = value; \ 136a30f8f8cSSatish Balay goto b_noinsert; \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay } \ 139a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 140085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 141ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay b_noinsert:; \ 152a30f8f8cSSatish Balay bilen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #endif 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 160a30f8f8cSSatish Balay { 161a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 162dfbe8321SBarry Smith PetscErrorCode ierr; 1631302d50aSBarry Smith PetscInt i,N = m*n; 164a30f8f8cSSatish Balay MatScalar *vsingle; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (N > b->setvalueslen) { 168a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 16982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 170a30f8f8cSSatish Balay b->setvalueslen = N; 171a30f8f8cSSatish Balay } 172a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 173a30f8f8cSSatish Balay 174a30f8f8cSSatish Balay for (i=0; i<N; i++) { 175a30f8f8cSSatish Balay vsingle[i] = v[i]; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 178a30f8f8cSSatish Balay PetscFunctionReturn(0); 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 1814a2ae208SSatish Balay #undef __FUNCT__ 1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 184a30f8f8cSSatish Balay { 185a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 186dfbe8321SBarry Smith PetscErrorCode ierr; 1871302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 188a30f8f8cSSatish Balay MatScalar *vsingle; 189a30f8f8cSSatish Balay 190a30f8f8cSSatish Balay PetscFunctionBegin; 191a30f8f8cSSatish Balay if (N > b->setvalueslen) { 192a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 19382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 194a30f8f8cSSatish Balay b->setvalueslen = N; 195a30f8f8cSSatish Balay } 196a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 197a30f8f8cSSatish Balay for (i=0; i<N; i++) { 198a30f8f8cSSatish Balay vsingle[i] = v[i]; 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 201a30f8f8cSSatish Balay PetscFunctionReturn(0); 202a30f8f8cSSatish Balay } 203a30f8f8cSSatish Balay #endif 204a30f8f8cSSatish Balay 205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 206a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 207a30f8f8cSSatish Balay */ 2084a2ae208SSatish Balay #undef __FUNCT__ 209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 211a30f8f8cSSatish Balay { 212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 213a30f8f8cSSatish Balay MatScalar value; 214b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 215dfbe8321SBarry Smith PetscErrorCode ierr; 2161302d50aSBarry Smith PetscInt i,j,row,col; 2171302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2181302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 219521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay /* Some Variables required in the macro */ 222a30f8f8cSSatish Balay Mat A = baij->A; 223a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2241302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 225a30f8f8cSSatish Balay MatScalar *aa=a->a; 226a30f8f8cSSatish Balay 227a30f8f8cSSatish Balay Mat B = baij->B; 228a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2291302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 230a30f8f8cSSatish Balay MatScalar *ba=b->a; 231a30f8f8cSSatish Balay 2321302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2331302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 234a30f8f8cSSatish Balay MatScalar *ap,*bap; 235a30f8f8cSSatish Balay 236a30f8f8cSSatish Balay /* for stash */ 2371302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 238f65c83cfSHong Zhang MatScalar *v_loc=0; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay if(!baij->donotstash){ 2431302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 24482502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay for (i=0; i<m; i++) { 248a30f8f8cSSatish Balay if (im[i] < 0) continue; 2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 25077431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 251a30f8f8cSSatish Balay #endif 252a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 253a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 254a30f8f8cSSatish Balay for (j=0; j<n; j++) { 255f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 256a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 257a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 258a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 259a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 260a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 261a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 262a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 263a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 26577431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 266a30f8f8cSSatish Balay #endif 267a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 268a30f8f8cSSatish Balay if (mat->was_assembled) { 269a30f8f8cSSatish Balay if (!baij->colmap) { 270653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 271a30f8f8cSSatish Balay } 272a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 273a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 27471730473SSatish Balay col = col - 1; 275a30f8f8cSSatish Balay #else 27671730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 277a30f8f8cSSatish Balay #endif 278a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 279a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 280a30f8f8cSSatish Balay col = in[j]; 281a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 282a30f8f8cSSatish Balay B = baij->B; 283a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 284a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 285a30f8f8cSSatish Balay ba=b->a; 28671730473SSatish Balay } else col += in[j]%bs; 287a30f8f8cSSatish Balay } else col = in[j]; 288a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 289a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 290a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay } 293a30f8f8cSSatish Balay } else { /* off processor entry */ 294a30f8f8cSSatish Balay if (!baij->donotstash) { 295a30f8f8cSSatish Balay n_loc = 0; 296a30f8f8cSSatish Balay for (j=0; j<n; j++){ 297f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 298a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 299a30f8f8cSSatish Balay if (roworiented) { 300a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 301a30f8f8cSSatish Balay } else { 302a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay n_loc++; 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 307a30f8f8cSSatish Balay } 308a30f8f8cSSatish Balay } 309a30f8f8cSSatish Balay } 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay if(!baij->donotstash){ 312a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 313a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay PetscFunctionReturn(0); 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay 3184a2ae208SSatish Balay #undef __FUNCT__ 319e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3201302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 321a30f8f8cSSatish Balay { 3220880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 323f15d580aSBarry Smith const MatScalar *value; 324f15d580aSBarry Smith MatScalar *barray=baij->barray; 3250880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 326dfbe8321SBarry Smith PetscErrorCode ierr; 3271302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 3281302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 329521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 3300880e062SHong Zhang 331a30f8f8cSSatish Balay PetscFunctionBegin; 3320880e062SHong Zhang if(!barray) { 3330880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3340880e062SHong Zhang baij->barray = barray; 3350880e062SHong Zhang } 3360880e062SHong Zhang 3370880e062SHong Zhang if (roworiented) { 3380880e062SHong Zhang stepval = (n-1)*bs; 3390880e062SHong Zhang } else { 3400880e062SHong Zhang stepval = (m-1)*bs; 3410880e062SHong Zhang } 3420880e062SHong Zhang for (i=0; i<m; i++) { 3430880e062SHong Zhang if (im[i] < 0) continue; 3442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 34577431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3460880e062SHong Zhang #endif 3470880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3480880e062SHong Zhang row = im[i] - rstart; 3490880e062SHong Zhang for (j=0; j<n; j++) { 3500880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3510880e062SHong Zhang if ((roworiented) && (n == 1)) { 352f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3530880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 354f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3550880e062SHong Zhang } else { /* Here a copy is required */ 3560880e062SHong Zhang if (roworiented) { 3570880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3580880e062SHong Zhang } else { 3590880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3600880e062SHong Zhang } 3610880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3620880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3630880e062SHong Zhang *barray++ = *value++; 3640880e062SHong Zhang } 3650880e062SHong Zhang } 3660880e062SHong Zhang barray -=bs2; 3670880e062SHong Zhang } 3680880e062SHong Zhang 3690880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3700880e062SHong Zhang col = in[j] - cstart; 3710880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3720880e062SHong Zhang } 3730880e062SHong Zhang else if (in[j] < 0) continue; 3742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 37577431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3760880e062SHong Zhang #endif 3770880e062SHong Zhang else { 3780880e062SHong Zhang if (mat->was_assembled) { 3790880e062SHong Zhang if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3810880e062SHong Zhang } 3820880e062SHong Zhang 3832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3840880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3851302d50aSBarry Smith { PetscInt data; 3860880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3870880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3880880e062SHong Zhang } 3890880e062SHong Zhang #else 3900880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3910880e062SHong Zhang #endif 3920880e062SHong Zhang #endif 3930880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3940880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3950880e062SHong Zhang col = (col - 1)/bs; 3960880e062SHong Zhang #else 3970880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3980880e062SHong Zhang #endif 3990880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4000880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4010880e062SHong Zhang col = in[j]; 4020880e062SHong Zhang } 4030880e062SHong Zhang } 4040880e062SHong Zhang else col = in[j]; 405e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4060880e062SHong Zhang } 4070880e062SHong Zhang } 4080880e062SHong Zhang } else { 4090880e062SHong Zhang if (!baij->donotstash) { 4100880e062SHong Zhang if (roworiented) { 4110880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4120880e062SHong Zhang } else { 4130880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4140880e062SHong Zhang } 4150880e062SHong Zhang } 4160880e062SHong Zhang } 4170880e062SHong Zhang } 4180880e062SHong Zhang PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 4224a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 424a30f8f8cSSatish Balay { 425f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4266849ba73SBarry Smith PetscErrorCode ierr; 427521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 4281302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 429a30f8f8cSSatish Balay 430a30f8f8cSSatish Balay PetscFunctionBegin; 431a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43277431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 43377431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 434a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 435a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 436a30f8f8cSSatish Balay for (j=0; j<n; j++) { 43777431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 43877431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 439a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 440a30f8f8cSSatish Balay col = idxn[j] - bscstart; 441c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 442a30f8f8cSSatish Balay } else { 443a30f8f8cSSatish Balay if (!baij->colmap) { 444653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 445a30f8f8cSSatish Balay } 446a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 447a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 448a30f8f8cSSatish Balay data --; 449a30f8f8cSSatish Balay #else 450a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 451a30f8f8cSSatish Balay #endif 452a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 453a30f8f8cSSatish Balay else { 454a30f8f8cSSatish Balay col = data + idxn[j]%bs; 455e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 456a30f8f8cSSatish Balay } 457a30f8f8cSSatish Balay } 458a30f8f8cSSatish Balay } 459a30f8f8cSSatish Balay } else { 46029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 461a30f8f8cSSatish Balay } 462a30f8f8cSSatish Balay } 463a30f8f8cSSatish Balay PetscFunctionReturn(0); 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay 4664a2ae208SSatish Balay #undef __FUNCT__ 4674a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 468dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 469a30f8f8cSSatish Balay { 470a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 471dfbe8321SBarry Smith PetscErrorCode ierr; 472a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 473a30f8f8cSSatish Balay 474a30f8f8cSSatish Balay PetscFunctionBegin; 475a30f8f8cSSatish Balay if (baij->size == 1) { 476a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 479f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 480a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 481a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 482a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 483a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 484d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 485a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 486a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4870b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4880b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4890b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4900b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 4910b8dc8d2SHong Zhang PetscInt *jj,*garray=baij->garray,rstart=baij->rstart,nz; 4920b8dc8d2SHong Zhang PetscInt brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs; 4930b8dc8d2SHong Zhang MatScalar *v; 4940b8dc8d2SHong Zhang 4950b8dc8d2SHong Zhang ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 4960b8dc8d2SHong Zhang rsum2 = rsum + mat->N; 4970b8dc8d2SHong Zhang ierr = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 4980b8dc8d2SHong Zhang /* Amat */ 4990b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5000b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5010b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5020b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5030b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5040b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5050b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5060b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5070b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5080b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5090b8dc8d2SHong Zhang /* non-diagonal block */ 5100b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5110b8dc8d2SHong Zhang } 5120b8dc8d2SHong Zhang } 5130b8dc8d2SHong Zhang } 5140b8dc8d2SHong Zhang } 5150b8dc8d2SHong Zhang /* Bmat */ 5160b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5170b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5180b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5190b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5200b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5210b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5220b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5230b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5240b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5250b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5260b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5270b8dc8d2SHong Zhang } 5280b8dc8d2SHong Zhang } 5290b8dc8d2SHong Zhang } 5300b8dc8d2SHong Zhang } 5310b8dc8d2SHong Zhang ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5320b8dc8d2SHong Zhang *norm = 0.0; 5330b8dc8d2SHong Zhang for (col=0; col<mat->N; col++) { 5340b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 537a30f8f8cSSatish Balay } else { 53829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay PetscFunctionReturn(0); 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay 5444a2ae208SSatish Balay #undef __FUNCT__ 5454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 546dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 547a30f8f8cSSatish Balay { 548a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 549dfbe8321SBarry Smith PetscErrorCode ierr; 5501302d50aSBarry Smith PetscInt nstash,reallocs; 551a30f8f8cSSatish Balay InsertMode addv; 552a30f8f8cSSatish Balay 553a30f8f8cSSatish Balay PetscFunctionBegin; 554a30f8f8cSSatish Balay if (baij->donotstash) { 555a30f8f8cSSatish Balay PetscFunctionReturn(0); 556a30f8f8cSSatish Balay } 557a30f8f8cSSatish Balay 558a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 559a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 560a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 562a30f8f8cSSatish Balay } 563a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 566a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 567a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 56863ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 569a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 57063ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 571a30f8f8cSSatish Balay PetscFunctionReturn(0); 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 5744a2ae208SSatish Balay #undef __FUNCT__ 5754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 576dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 577a30f8f8cSSatish Balay { 578a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 579a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 580a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 5816849ba73SBarry Smith PetscErrorCode ierr; 58213f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5831302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 58413f74950SBarry Smith PetscMPIInt n; 585a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 586a30f8f8cSSatish Balay MatScalar *val; 587a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay PetscFunctionBegin; 590a30f8f8cSSatish Balay 591a30f8f8cSSatish Balay if (!baij->donotstash) { 592a30f8f8cSSatish Balay while (1) { 593a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 594a30f8f8cSSatish Balay if (!flg) break; 595a30f8f8cSSatish Balay 596a30f8f8cSSatish Balay for (i=0; i<n;) { 597a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 598a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 599a30f8f8cSSatish Balay if (j < n) ncols = j-i; 600a30f8f8cSSatish Balay else ncols = n-i; 601a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 602a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 603a30f8f8cSSatish Balay i = j; 604a30f8f8cSSatish Balay } 605a30f8f8cSSatish Balay } 606a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 607a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 608a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 609a30f8f8cSSatish Balay restore the original flags */ 610a30f8f8cSSatish Balay r1 = baij->roworiented; 611a30f8f8cSSatish Balay r2 = a->roworiented; 612a30f8f8cSSatish Balay r3 = b->roworiented; 613a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 614a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 615a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 616a30f8f8cSSatish Balay while (1) { 617a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 618a30f8f8cSSatish Balay if (!flg) break; 619a30f8f8cSSatish Balay 620a30f8f8cSSatish Balay for (i=0; i<n;) { 621a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 622a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 623a30f8f8cSSatish Balay if (j < n) ncols = j-i; 624a30f8f8cSSatish Balay else ncols = n-i; 625a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 626a30f8f8cSSatish Balay i = j; 627a30f8f8cSSatish Balay } 628a30f8f8cSSatish Balay } 629a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 630a30f8f8cSSatish Balay baij->roworiented = r1; 631a30f8f8cSSatish Balay a->roworiented = r2; 632a30f8f8cSSatish Balay b->roworiented = r3; 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 636a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 637a30f8f8cSSatish Balay 638a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 639a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 640a30f8f8cSSatish Balay /* 641a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 642a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 643a30f8f8cSSatish Balay */ 644a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 645a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 646a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 647c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 653a30f8f8cSSatish Balay } 6544eb6d288SHong Zhang b->compressedrow.use = PETSC_TRUE; 655a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 656a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (baij->rowvalues) { 659a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 660a30f8f8cSSatish Balay baij->rowvalues = 0; 661a30f8f8cSSatish Balay } 6625222a1afSHong Zhang 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 6664a2ae208SSatish Balay #undef __FUNCT__ 6674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6686849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 669a30f8f8cSSatish Balay { 670a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 671dfbe8321SBarry Smith PetscErrorCode ierr; 672521d7252SBarry Smith PetscInt bs = mat->bs; 6731302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 67432077d6dSBarry Smith PetscTruth iascii,isdraw; 675b0a32e0cSBarry Smith PetscViewer sviewer; 676f3ef73ceSBarry Smith PetscViewerFormat format; 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay PetscFunctionBegin; 67932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 680fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68132077d6dSBarry Smith if (iascii) { 682b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 683456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 684a30f8f8cSSatish Balay MatInfo info; 685a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 686a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 68777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 68877431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 689521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 690a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 694b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 695a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 696a30f8f8cSSatish Balay PetscFunctionReturn(0); 697fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 69877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 699a30f8f8cSSatish Balay PetscFunctionReturn(0); 700c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 701c1490034SHong Zhang PetscFunctionReturn(0); 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay 705a30f8f8cSSatish Balay if (isdraw) { 706b0a32e0cSBarry Smith PetscDraw draw; 707a30f8f8cSSatish Balay PetscTruth isnull; 708b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 709b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay 712a30f8f8cSSatish Balay if (size == 1) { 713e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay } else { 716a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 717a30f8f8cSSatish Balay Mat A; 71865d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 71965d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7201302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 721a30f8f8cSSatish Balay MatScalar *a; 722a30f8f8cSSatish Balay 723f204ca49SKris Buschelman /* Should this be the same type as mat? */ 724f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 725a30f8f8cSSatish Balay if (!rank) { 726f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 727a30f8f8cSSatish Balay } else { 728f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 729a30f8f8cSSatish Balay } 730f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 731521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay /* copy over the A part */ 73565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 736a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7371302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 738a30f8f8cSSatish Balay 739a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 740a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 741a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 742a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 743a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 744a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 745a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 746a30f8f8cSSatish Balay col++; a += bs; 747a30f8f8cSSatish Balay } 748a30f8f8cSSatish Balay } 749a30f8f8cSSatish Balay } 750a30f8f8cSSatish Balay /* copy over the B part */ 75165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 753a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 754a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 755a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 756a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 757a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 758a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 759a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 760a30f8f8cSSatish Balay col++; a += bs; 761a30f8f8cSSatish Balay } 762a30f8f8cSSatish Balay } 763a30f8f8cSSatish Balay } 764a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 765a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 766a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 767a30f8f8cSSatish Balay /* 768a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 769b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 770a30f8f8cSSatish Balay */ 771b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77265d70643SHong Zhang if (!rank) { 773e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 775a30f8f8cSSatish Balay } 776b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 777a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay PetscFunctionReturn(0); 780a30f8f8cSSatish Balay } 781a30f8f8cSSatish Balay 7824a2ae208SSatish Balay #undef __FUNCT__ 7834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 784dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 785a30f8f8cSSatish Balay { 786dfbe8321SBarry Smith PetscErrorCode ierr; 78732077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 788a30f8f8cSSatish Balay 789a30f8f8cSSatish Balay PetscFunctionBegin; 79032077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 791fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 792b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 793fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 79432077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 795a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 796a30f8f8cSSatish Balay } else { 7971302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay PetscFunctionReturn(0); 800a30f8f8cSSatish Balay } 801a30f8f8cSSatish Balay 8024a2ae208SSatish Balay #undef __FUNCT__ 8034a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 804dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 805a30f8f8cSSatish Balay { 806a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 807dfbe8321SBarry Smith PetscErrorCode ierr; 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay PetscFunctionBegin; 810a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 81177431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 812a30f8f8cSSatish Balay #endif 813a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 815a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 816a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 817a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 818a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 819a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 820a30f8f8cSSatish Balay #else 821a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 822a30f8f8cSSatish Balay #endif 823a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 824a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 825a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 82640781036SHong Zhang if (baij->slvec0) { 82740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 82840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 82940781036SHong Zhang } 83040781036SHong Zhang if (baij->slvec1) { 83140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 83440781036SHong Zhang } 83540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 836a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 837a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 838a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 839a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 840a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 841a30f8f8cSSatish Balay #endif 842a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 843901853e0SKris Buschelman 844901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 845901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 846901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 847901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 848a30f8f8cSSatish Balay PetscFunctionReturn(0); 849a30f8f8cSSatish Balay } 850a30f8f8cSSatish Balay 8514a2ae208SSatish Balay #undef __FUNCT__ 852a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 853dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 854a9d4b620SHong Zhang { 855a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 856dfbe8321SBarry Smith PetscErrorCode ierr; 857521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 858a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 859a9d4b620SHong Zhang 860a9d4b620SHong Zhang PetscFunctionBegin; 861a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 862a9d4b620SHong Zhang if (nt != A->n) { 863a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 864a9d4b620SHong Zhang } 865a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 866a9d4b620SHong Zhang if (nt != A->m) { 867a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 868a9d4b620SHong Zhang } 869a9d4b620SHong Zhang 870a9d4b620SHong Zhang /* diagonal part */ 871a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8722dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 873a9d4b620SHong Zhang 874a9d4b620SHong Zhang /* subdiagonal part */ 875a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 876a9d4b620SHong Zhang 877a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8781ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8791ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 880a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8811ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 882a9d4b620SHong Zhang 883a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 8841ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 885a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 886a9d4b620SHong Zhang 887a9d4b620SHong Zhang /* supperdiagonal part */ 888a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 889a9d4b620SHong Zhang 890a9d4b620SHong Zhang PetscFunctionReturn(0); 891a9d4b620SHong Zhang } 892a9d4b620SHong Zhang 893a9d4b620SHong Zhang #undef __FUNCT__ 89440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 895dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 896a30f8f8cSSatish Balay { 897a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 898dfbe8321SBarry Smith PetscErrorCode ierr; 8991302d50aSBarry Smith PetscInt nt; 900a30f8f8cSSatish Balay 901a30f8f8cSSatish Balay PetscFunctionBegin; 902a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 903b5df2d14SHong Zhang if (nt != A->n) { 90429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 905a30f8f8cSSatish Balay } 906a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 907b5df2d14SHong Zhang if (nt != A->m) { 90829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 909a30f8f8cSSatish Balay } 91065d70643SHong Zhang 911b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 912b941877fSHong Zhang /* do diagonal part */ 913b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 914b941877fSHong Zhang /* do supperdiagonal part */ 915b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 916b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 917b941877fSHong Zhang /* do subdiagonal part */ 918b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 919b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 920b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 92165d70643SHong Zhang 922a30f8f8cSSatish Balay PetscFunctionReturn(0); 923a30f8f8cSSatish Balay } 924a30f8f8cSSatish Balay 9254a2ae208SSatish Balay #undef __FUNCT__ 9264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 927dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 928a30f8f8cSSatish Balay { 929de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 930dfbe8321SBarry Smith PetscErrorCode ierr; 931521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 932a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang PetscFunctionBegin; 935a9d4b620SHong Zhang /* 93656faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 93756faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 938a9d4b620SHong Zhang */ 939a9d4b620SHong Zhang /* diagonal part */ 940a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9412dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 942a9d4b620SHong Zhang 943a9d4b620SHong Zhang /* subdiagonal part */ 944a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 945a9d4b620SHong Zhang 946a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9471ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9481ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 949a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9501ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 951a9d4b620SHong Zhang 952a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9531ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 954a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 955a9d4b620SHong Zhang 956a9d4b620SHong Zhang /* supperdiagonal part */ 957a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 958a9d4b620SHong Zhang 959a9d4b620SHong Zhang PetscFunctionReturn(0); 960a9d4b620SHong Zhang } 961a9d4b620SHong Zhang 962a9d4b620SHong Zhang #undef __FUNCT__ 963a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 964dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 965a9d4b620SHong Zhang { 966a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 967dfbe8321SBarry Smith PetscErrorCode ierr; 968a30f8f8cSSatish Balay 969a30f8f8cSSatish Balay PetscFunctionBegin; 970b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 971b941877fSHong Zhang /* do diagonal part */ 972b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 973b941877fSHong Zhang /* do supperdiagonal part */ 974b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 975de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 976de8b6608SHong Zhang 977b941877fSHong Zhang /* do subdiagonal part */ 978a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 979a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 980a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 981aa482183SHong Zhang 982a30f8f8cSSatish Balay PetscFunctionReturn(0); 983a30f8f8cSSatish Balay } 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay /* 986a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 987a30f8f8cSSatish Balay diagonal block 988a30f8f8cSSatish Balay */ 9894a2ae208SSatish Balay #undef __FUNCT__ 9904a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 991dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 992a30f8f8cSSatish Balay { 993a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 994dfbe8321SBarry Smith PetscErrorCode ierr; 995a30f8f8cSSatish Balay 996a30f8f8cSSatish Balay PetscFunctionBegin; 99729bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 998a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 999a30f8f8cSSatish Balay PetscFunctionReturn(0); 1000a30f8f8cSSatish Balay } 1001a30f8f8cSSatish Balay 10024a2ae208SSatish Balay #undef __FUNCT__ 10034a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1004f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1005a30f8f8cSSatish Balay { 1006a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1007dfbe8321SBarry Smith PetscErrorCode ierr; 1008a30f8f8cSSatish Balay 1009a30f8f8cSSatish Balay PetscFunctionBegin; 1010f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1011f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1012a30f8f8cSSatish Balay PetscFunctionReturn(0); 1013a30f8f8cSSatish Balay } 1014a30f8f8cSSatish Balay 10154a2ae208SSatish Balay #undef __FUNCT__ 10164a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10171302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1018a30f8f8cSSatish Balay { 1019*d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1020*d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1021*d0d4cfc2SHong Zhang PetscErrorCode ierr; 1022*d0d4cfc2SHong Zhang PetscInt bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1023*d0d4cfc2SHong Zhang PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1024*d0d4cfc2SHong Zhang PetscInt *cmap,*idx_p,cstart = mat->cstart; 1025*d0d4cfc2SHong Zhang 1026a30f8f8cSSatish Balay PetscFunctionBegin; 1027*d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1028*d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1029*d0d4cfc2SHong Zhang 1030*d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1031*d0d4cfc2SHong Zhang /* 1032*d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1033*d0d4cfc2SHong Zhang */ 1034*d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1035*d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1036*d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1037*d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1038*d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1039*d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1040*d0d4cfc2SHong Zhang } 1041*d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1042*d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1043*d0d4cfc2SHong Zhang } 1044*d0d4cfc2SHong Zhang 1045*d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1046*d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1047*d0d4cfc2SHong Zhang 1048*d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1049*d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1050*d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1051*d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1052*d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1053*d0d4cfc2SHong Zhang nztot = nzA + nzB; 1054*d0d4cfc2SHong Zhang 1055*d0d4cfc2SHong Zhang cmap = mat->garray; 1056*d0d4cfc2SHong Zhang if (v || idx) { 1057*d0d4cfc2SHong Zhang if (nztot) { 1058*d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1059*d0d4cfc2SHong Zhang PetscInt imark = -1; 1060*d0d4cfc2SHong Zhang if (v) { 1061*d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1062*d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1063*d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1064*d0d4cfc2SHong Zhang else break; 1065*d0d4cfc2SHong Zhang } 1066*d0d4cfc2SHong Zhang imark = i; 1067*d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1068*d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1069*d0d4cfc2SHong Zhang } 1070*d0d4cfc2SHong Zhang if (idx) { 1071*d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1072*d0d4cfc2SHong Zhang if (imark > -1) { 1073*d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1074*d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1075*d0d4cfc2SHong Zhang } 1076*d0d4cfc2SHong Zhang } else { 1077*d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1078*d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1079*d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1080*d0d4cfc2SHong Zhang else break; 1081*d0d4cfc2SHong Zhang } 1082*d0d4cfc2SHong Zhang imark = i; 1083*d0d4cfc2SHong Zhang } 1084*d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1085*d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1086*d0d4cfc2SHong Zhang } 1087*d0d4cfc2SHong Zhang } else { 1088*d0d4cfc2SHong Zhang if (idx) *idx = 0; 1089*d0d4cfc2SHong Zhang if (v) *v = 0; 1090*d0d4cfc2SHong Zhang } 1091*d0d4cfc2SHong Zhang } 1092*d0d4cfc2SHong Zhang *nz = nztot; 1093*d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1094*d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1095a30f8f8cSSatish Balay PetscFunctionReturn(0); 1096a30f8f8cSSatish Balay } 1097a30f8f8cSSatish Balay 10984a2ae208SSatish Balay #undef __FUNCT__ 10994a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11001302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1101a30f8f8cSSatish Balay { 1102a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1103a30f8f8cSSatish Balay 1104a30f8f8cSSatish Balay PetscFunctionBegin; 1105abc0a331SBarry Smith if (!baij->getrowactive) { 1106abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1107a30f8f8cSSatish Balay } 1108a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1109a30f8f8cSSatish Balay PetscFunctionReturn(0); 1110a30f8f8cSSatish Balay } 1111a30f8f8cSSatish Balay 11124a2ae208SSatish Balay #undef __FUNCT__ 1113*d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1114*d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1115*d0d4cfc2SHong Zhang { 1116*d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1117*d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1118*d0d4cfc2SHong Zhang 1119*d0d4cfc2SHong Zhang PetscFunctionBegin; 1120*d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1121*d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1122*d0d4cfc2SHong Zhang } 1123*d0d4cfc2SHong Zhang #undef __FUNCT__ 1124*d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1125*d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1126*d0d4cfc2SHong Zhang { 1127*d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128*d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1129*d0d4cfc2SHong Zhang 1130*d0d4cfc2SHong Zhang PetscFunctionBegin; 1131*d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1132*d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1133*d0d4cfc2SHong Zhang } 1134*d0d4cfc2SHong Zhang 1135*d0d4cfc2SHong Zhang #undef __FUNCT__ 113699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 113799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 113899cafbc1SBarry Smith { 113999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 114099cafbc1SBarry Smith PetscErrorCode ierr; 114199cafbc1SBarry Smith 114299cafbc1SBarry Smith PetscFunctionBegin; 114399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 114499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 114599cafbc1SBarry Smith PetscFunctionReturn(0); 114699cafbc1SBarry Smith } 114799cafbc1SBarry Smith 114899cafbc1SBarry Smith #undef __FUNCT__ 114999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 115099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 115199cafbc1SBarry Smith { 115299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115399cafbc1SBarry Smith PetscErrorCode ierr; 115499cafbc1SBarry Smith 115599cafbc1SBarry Smith PetscFunctionBegin; 115699cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 115799cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 115899cafbc1SBarry Smith PetscFunctionReturn(0); 115999cafbc1SBarry Smith } 116099cafbc1SBarry Smith 116199cafbc1SBarry Smith #undef __FUNCT__ 11624a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1163dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1164a30f8f8cSSatish Balay { 1165a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1166dfbe8321SBarry Smith PetscErrorCode ierr; 1167a30f8f8cSSatish Balay 1168a30f8f8cSSatish Balay PetscFunctionBegin; 1169a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1170a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1171a30f8f8cSSatish Balay PetscFunctionReturn(0); 1172a30f8f8cSSatish Balay } 1173a30f8f8cSSatish Balay 11744a2ae208SSatish Balay #undef __FUNCT__ 11754a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1176dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1177a30f8f8cSSatish Balay { 1178a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1179a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1180dfbe8321SBarry Smith PetscErrorCode ierr; 1181a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1182a30f8f8cSSatish Balay 1183a30f8f8cSSatish Balay PetscFunctionBegin; 1184521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1185a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1186a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1187a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1188a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1189a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1190a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1191a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1192a30f8f8cSSatish Balay info->nz_used = isend[0]; 1193a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1194a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1195a30f8f8cSSatish Balay info->memory = isend[3]; 1196a30f8f8cSSatish Balay info->mallocs = isend[4]; 1197a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1198d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1199a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1200a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1201a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1202a30f8f8cSSatish Balay info->memory = irecv[3]; 1203a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1204a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1205d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1206a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1207a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1208a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1209a30f8f8cSSatish Balay info->memory = irecv[3]; 1210a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1211a30f8f8cSSatish Balay } else { 121277431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1213a30f8f8cSSatish Balay } 1214f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1215f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1216f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1217f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1218a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1219a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1220a30f8f8cSSatish Balay info->factor_mallocs = 0; 1221a30f8f8cSSatish Balay PetscFunctionReturn(0); 1222a30f8f8cSSatish Balay } 1223a30f8f8cSSatish Balay 12244a2ae208SSatish Balay #undef __FUNCT__ 12254a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1226dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1227a30f8f8cSSatish Balay { 1228a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1229*d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1230dfbe8321SBarry Smith PetscErrorCode ierr; 1231a30f8f8cSSatish Balay 1232a30f8f8cSSatish Balay PetscFunctionBegin; 1233e98b92d7SKris Buschelman switch (op) { 1234e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1235e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1236e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1237e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1238e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1239e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1240e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1241a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1242a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1243e98b92d7SKris Buschelman break; 1244e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1245a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1246a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1247a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1248e98b92d7SKris Buschelman break; 1249e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1250e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1251e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 125263ba0a88SBarry Smith ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr); 1253e98b92d7SKris Buschelman break; 1254e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1255a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1256a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1257a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1258e98b92d7SKris Buschelman break; 1259e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1260a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1261e98b92d7SKris Buschelman break; 1262e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 126329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1264e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1265a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1266e98b92d7SKris Buschelman break; 12679a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12689a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12699a4540c5SBarry Smith case MAT_HERMITIAN: 12709a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 127177e54ba9SKris Buschelman case MAT_SYMMETRIC: 127277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12739a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12749a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12759a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 127677e54ba9SKris Buschelman break; 1277*d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1278*d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_TRUE; 1279*d0d4cfc2SHong Zhang break; 1280*d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1281*d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_FALSE; 1282*d0d4cfc2SHong Zhang break; 1283*d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1284*d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1285*d0d4cfc2SHong Zhang break; 1286e98b92d7SKris Buschelman default: 128729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1288a30f8f8cSSatish Balay } 1289a30f8f8cSSatish Balay PetscFunctionReturn(0); 1290a30f8f8cSSatish Balay } 1291a30f8f8cSSatish Balay 12924a2ae208SSatish Balay #undef __FUNCT__ 12938115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1294dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1295a30f8f8cSSatish Balay { 1296dfbe8321SBarry Smith PetscErrorCode ierr; 1297a30f8f8cSSatish Balay PetscFunctionBegin; 1298999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12998115998fSBarry Smith PetscFunctionReturn(0); 1300a30f8f8cSSatish Balay } 1301a30f8f8cSSatish Balay 13024a2ae208SSatish Balay #undef __FUNCT__ 13034a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1304dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1305a30f8f8cSSatish Balay { 1306a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1307a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1308dfbe8321SBarry Smith PetscErrorCode ierr; 13095e90f9d9SHong Zhang PetscInt nv,m,n; 1310b3bf805bSHong Zhang PetscTruth flg; 1311a30f8f8cSSatish Balay 1312a30f8f8cSSatish Balay PetscFunctionBegin; 1313a30f8f8cSSatish Balay if (ll != rr){ 1314b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1315b3bf805bSHong Zhang if (!flg) 131629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1317a30f8f8cSSatish Balay } 1318b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1319b3bf805bSHong Zhang 13205e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13215e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1322b3bf805bSHong Zhang 13235e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13245e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13255e90f9d9SHong Zhang 1326a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 13275e90f9d9SHong Zhang 13285e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1329a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13305e90f9d9SHong Zhang 13315e90f9d9SHong Zhang /* scale the diagonal part */ 1332a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay 13345e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1335a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1336a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1337a30f8f8cSSatish Balay PetscFunctionReturn(0); 1338a30f8f8cSSatish Balay } 1339a30f8f8cSSatish Balay 13404a2ae208SSatish Balay #undef __FUNCT__ 13414a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1342dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1343a30f8f8cSSatish Balay { 1344a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1345a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 13461302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1347dfbe8321SBarry Smith PetscErrorCode ierr; 1348a30f8f8cSSatish Balay 1349a30f8f8cSSatish Balay PetscFunctionBegin; 1350a30f8f8cSSatish Balay if (!a->rank) { 1351a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1352a30f8f8cSSatish Balay } 13531302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1354a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1355a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1356a30f8f8cSSatish Balay PetscFunctionReturn(0); 1357a30f8f8cSSatish Balay } 1358a30f8f8cSSatish Balay 13594a2ae208SSatish Balay #undef __FUNCT__ 13604a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1361dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1362a30f8f8cSSatish Balay { 1363f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1364dfbe8321SBarry Smith PetscErrorCode ierr; 1365a30f8f8cSSatish Balay 1366a30f8f8cSSatish Balay PetscFunctionBegin; 1367a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1368a30f8f8cSSatish Balay PetscFunctionReturn(0); 1369a30f8f8cSSatish Balay } 1370a30f8f8cSSatish Balay 13716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1372a30f8f8cSSatish Balay 13734a2ae208SSatish Balay #undef __FUNCT__ 13744a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1375dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1376a30f8f8cSSatish Balay { 1377a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1378a30f8f8cSSatish Balay Mat a,b,c,d; 1379a30f8f8cSSatish Balay PetscTruth flg; 1380dfbe8321SBarry Smith PetscErrorCode ierr; 1381a30f8f8cSSatish Balay 1382a30f8f8cSSatish Balay PetscFunctionBegin; 1383a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1384a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1385a30f8f8cSSatish Balay 1386a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1387abc0a331SBarry Smith if (flg) { 1388a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1389a30f8f8cSSatish Balay } 1390a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1391a30f8f8cSSatish Balay PetscFunctionReturn(0); 1392a30f8f8cSSatish Balay } 1393a30f8f8cSSatish Balay 13944a2ae208SSatish Balay #undef __FUNCT__ 13953c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13963c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13973c896bc6SHong Zhang { 13983c896bc6SHong Zhang PetscErrorCode ierr; 13993c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 14003c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 14013c896bc6SHong Zhang 14023c896bc6SHong Zhang PetscFunctionBegin; 14033c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14043c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1405*d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14063c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1407*d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14083c896bc6SHong Zhang } else { 14093c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14103c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14113c896bc6SHong Zhang } 14123c896bc6SHong Zhang PetscFunctionReturn(0); 14133c896bc6SHong Zhang } 14143c896bc6SHong Zhang 14153c896bc6SHong Zhang #undef __FUNCT__ 14164a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1417dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1418273d9f13SBarry Smith { 1419dfbe8321SBarry Smith PetscErrorCode ierr; 1420273d9f13SBarry Smith 1421273d9f13SBarry Smith PetscFunctionBegin; 1422273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1423273d9f13SBarry Smith PetscFunctionReturn(0); 1424273d9f13SBarry Smith } 1425a5e6ed63SBarry Smith 14264fe895cdSHong Zhang #include "petscblaslapack.h" 14274fe895cdSHong Zhang #undef __FUNCT__ 14284fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14294fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14304fe895cdSHong Zhang { 14314fe895cdSHong Zhang PetscErrorCode ierr; 14324fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14334fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14344fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14354fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14364fe895cdSHong Zhang 14374fe895cdSHong Zhang PetscFunctionBegin; 14384fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14394fe895cdSHong Zhang PetscScalar alpha = a; 14404fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14414fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14424fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14434fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14444fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14454fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14464fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14474fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14484fe895cdSHong Zhang } else { 1449*d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14504fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1451*d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14524fe895cdSHong Zhang } 14534fe895cdSHong Zhang PetscFunctionReturn(0); 14544fe895cdSHong Zhang } 14554fe895cdSHong Zhang 1456a5e6ed63SBarry Smith #undef __FUNCT__ 1457a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14581302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1459a5e6ed63SBarry Smith { 14606849ba73SBarry Smith PetscErrorCode ierr; 14611302d50aSBarry Smith PetscInt i; 1462a5e6ed63SBarry Smith PetscTruth flg; 1463a5e6ed63SBarry Smith 14646849ba73SBarry Smith PetscFunctionBegin; 1465a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1466a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1467a5e6ed63SBarry Smith if (!flg) { 14681302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1469a5e6ed63SBarry Smith } 1470a5e6ed63SBarry Smith } 1471a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1472a5e6ed63SBarry Smith PetscFunctionReturn(0); 1473a5e6ed63SBarry Smith } 1474a5e6ed63SBarry Smith 1475a5e6ed63SBarry Smith 1476a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1477a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1478a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1479a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1480a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1481a9d4b620SHong Zhang MatMult_MPISBAIJ, 148297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1483431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1484431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay 0, 148897304618SKris Buschelman /*10*/ 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 14912798e883SHong Zhang MatRelax_MPISBAIJ, 1492a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 149397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1494a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1495a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1496a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1497a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 149897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1499a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1502a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1503dcf5cc72SBarry Smith /*25*/ 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 150897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1509b5df2d14SHong Zhang 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 151397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 15184fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1519a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1520d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1521a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15223c896bc6SHong Zhang MatCopy_MPISBAIJ, 152397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1524a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 1528521d7252SBarry Smith /*50*/ 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 153397304618SKris Buschelman /*55*/ 0, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 153897304618SKris Buschelman /*60*/ 0, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay 0, 15418a124369SBarry Smith MatGetPetscMaps_Petsc, 154224d5174aSHong Zhang 0, 154397304618SKris Buschelman /*65*/ 0, 154424d5174aSHong Zhang 0, 154524d5174aSHong Zhang 0, 154624d5174aSHong Zhang 0, 154724d5174aSHong Zhang 0, 154897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 154924d5174aSHong Zhang 0, 155097304618SKris Buschelman 0, 155197304618SKris Buschelman 0, 155297304618SKris Buschelman 0, 155397304618SKris Buschelman /*75*/ 0, 155497304618SKris Buschelman 0, 155597304618SKris Buschelman 0, 155697304618SKris Buschelman 0, 155797304618SKris Buschelman 0, 155897304618SKris Buschelman /*80*/ 0, 155997304618SKris Buschelman 0, 156097304618SKris Buschelman 0, 156197304618SKris Buschelman 0, 1562865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1563865e5f61SKris Buschelman /*85*/ 0, 1564865e5f61SKris Buschelman 0, 1565865e5f61SKris Buschelman 0, 1566865e5f61SKris Buschelman 0, 1567865e5f61SKris Buschelman 0, 1568865e5f61SKris Buschelman /*90*/ 0, 1569865e5f61SKris Buschelman 0, 1570865e5f61SKris Buschelman 0, 1571865e5f61SKris Buschelman 0, 1572865e5f61SKris Buschelman 0, 1573865e5f61SKris Buschelman /*95*/ 0, 1574865e5f61SKris Buschelman 0, 1575865e5f61SKris Buschelman 0, 157699cafbc1SBarry Smith 0, 157799cafbc1SBarry Smith 0, 157899cafbc1SBarry Smith /*100*/0, 157999cafbc1SBarry Smith 0, 158099cafbc1SBarry Smith 0, 158199cafbc1SBarry Smith 0, 158299cafbc1SBarry Smith 0, 158399cafbc1SBarry Smith /*105*/0, 158499cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1585*d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1586*d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1587*d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 158899cafbc1SBarry Smith }; 1589a30f8f8cSSatish Balay 1590a30f8f8cSSatish Balay 1591a30f8f8cSSatish Balay EXTERN_C_BEGIN 15924a2ae208SSatish Balay #undef __FUNCT__ 15934a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1594be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1595a30f8f8cSSatish Balay { 1596a30f8f8cSSatish Balay PetscFunctionBegin; 1597a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1598a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1599a30f8f8cSSatish Balay PetscFunctionReturn(0); 1600a30f8f8cSSatish Balay } 1601a30f8f8cSSatish Balay EXTERN_C_END 1602a30f8f8cSSatish Balay 1603273d9f13SBarry Smith EXTERN_C_BEGIN 16044a2ae208SSatish Balay #undef __FUNCT__ 1605a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1606be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1607a23d5eceSKris Buschelman { 1608a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1609dfbe8321SBarry Smith PetscErrorCode ierr; 16101302d50aSBarry Smith PetscInt i,mbs,Mbs; 1611a23d5eceSKris Buschelman 1612a23d5eceSKris Buschelman PetscFunctionBegin; 1613a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1614a23d5eceSKris Buschelman 1615a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1616a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1617a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 161877431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 161977431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1620a23d5eceSKris Buschelman if (d_nnz) { 1621a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 162277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1623a23d5eceSKris Buschelman } 1624a23d5eceSKris Buschelman } 1625a23d5eceSKris Buschelman if (o_nnz) { 1626a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 162777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1628a23d5eceSKris Buschelman } 1629a23d5eceSKris Buschelman } 1630a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1631a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1632a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1633a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1634a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1635a23d5eceSKris Buschelman 1636a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1637a23d5eceSKris Buschelman mbs = B->m/bs; 1638a23d5eceSKris Buschelman Mbs = B->M/bs; 1639a23d5eceSKris Buschelman if (mbs*bs != B->m) { 164077431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1641a23d5eceSKris Buschelman } 1642a23d5eceSKris Buschelman 1643521d7252SBarry Smith B->bs = bs; 1644a23d5eceSKris Buschelman b->bs2 = bs*bs; 1645a23d5eceSKris Buschelman b->mbs = mbs; 1646a23d5eceSKris Buschelman b->nbs = mbs; 1647a23d5eceSKris Buschelman b->Mbs = Mbs; 1648a23d5eceSKris Buschelman b->Nbs = Mbs; 1649a23d5eceSKris Buschelman 1650a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1651a23d5eceSKris Buschelman b->rowners[0] = 0; 1652a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1653a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1654a23d5eceSKris Buschelman } 1655a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1656a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1657a23d5eceSKris Buschelman b->cstart = b->rstart; 1658a23d5eceSKris Buschelman b->cend = b->rend; 1659a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1660a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1661a23d5eceSKris Buschelman } 1662a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1663a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1664a23d5eceSKris Buschelman 1665a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1666a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1667a23d5eceSKris Buschelman 1668f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1669f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->A,B->m,B->m,B->m,B->m);CHKERRQ(ierr); 16709c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1671c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 167252e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16739c097c71SKris Buschelman 1674f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1675f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->B,B->m,B->M,B->m,B->M);CHKERRQ(ierr); 16764aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1677589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 167852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1679a23d5eceSKris Buschelman 1680a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1681a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1682a23d5eceSKris Buschelman 1683a23d5eceSKris Buschelman PetscFunctionReturn(0); 1684a23d5eceSKris Buschelman } 1685a23d5eceSKris Buschelman EXTERN_C_END 1686a23d5eceSKris Buschelman 16870bad9183SKris Buschelman /*MC 1688fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16890bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16900bad9183SKris Buschelman 16910bad9183SKris Buschelman Options Database Keys: 16920bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16930bad9183SKris Buschelman 16940bad9183SKris Buschelman Level: beginner 16950bad9183SKris Buschelman 16960bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16970bad9183SKris Buschelman M*/ 16980bad9183SKris Buschelman 1699a23d5eceSKris Buschelman EXTERN_C_BEGIN 1700a23d5eceSKris Buschelman #undef __FUNCT__ 17014a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1702be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1703b5df2d14SHong Zhang { 1704b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1705dfbe8321SBarry Smith PetscErrorCode ierr; 1706b5df2d14SHong Zhang PetscTruth flg; 1707b5df2d14SHong Zhang 1708b5df2d14SHong Zhang PetscFunctionBegin; 1709b5df2d14SHong Zhang 1710b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1711b0a32e0cSBarry Smith B->data = (void*)b; 1712b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1713b5df2d14SHong Zhang 1714b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1715b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1716b5df2d14SHong Zhang B->mapping = 0; 1717b5df2d14SHong Zhang B->factor = 0; 1718b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1719b5df2d14SHong Zhang 1720b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1721b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1722b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1723b5df2d14SHong Zhang 1724b5df2d14SHong Zhang /* build local table of row and column ownerships */ 17251302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1726273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1727273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 172852e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang /* build cache for off array entries formed */ 1731b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1732b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1733b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1734b5df2d14SHong Zhang b->garray = PETSC_NULL; 1735b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1736b5df2d14SHong Zhang 1737f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1738b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 173964a35ccbSBarry Smith b->setvalueslen = 0; 1740b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1741b5df2d14SHong Zhang #endif 1742b5df2d14SHong Zhang 1743b5df2d14SHong Zhang /* stuff used in block assembly */ 1744b5df2d14SHong Zhang b->barray = 0; 1745b5df2d14SHong Zhang 1746b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1747b5df2d14SHong Zhang b->lvec = 0; 1748b5df2d14SHong Zhang b->Mvctx = 0; 174940781036SHong Zhang b->slvec0 = 0; 175040781036SHong Zhang b->slvec0b = 0; 175140781036SHong Zhang b->slvec1 = 0; 175240781036SHong Zhang b->slvec1a = 0; 175340781036SHong Zhang b->slvec1b = 0; 175440781036SHong Zhang b->sMvctx = 0; 1755b5df2d14SHong Zhang 1756b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1757b5df2d14SHong Zhang b->rowindices = 0; 1758b5df2d14SHong Zhang b->rowvalues = 0; 1759b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1760b5df2d14SHong Zhang 1761b5df2d14SHong Zhang /* hash table stuff */ 1762b5df2d14SHong Zhang b->ht = 0; 1763b5df2d14SHong Zhang b->hd = 0; 1764b5df2d14SHong Zhang b->ht_size = 0; 1765b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1766b5df2d14SHong Zhang b->ht_fact = 0; 1767b5df2d14SHong Zhang b->ht_total_ct = 0; 1768b5df2d14SHong Zhang b->ht_insert_ct = 0; 1769b5df2d14SHong Zhang 1770e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1771b5df2d14SHong Zhang if (flg) { 1772f6275e2eSBarry Smith PetscReal fact = 1.39; 1773b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1774e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1775b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1776b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 177763ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr); 1778b5df2d14SHong Zhang } 1779b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1780b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1781b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1782b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1783b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1784b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1785b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1786b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1787b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1788a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1789a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1790a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 179123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 179223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 179323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 179423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1795b5df2d14SHong Zhang PetscFunctionReturn(0); 1796b5df2d14SHong Zhang } 1797273d9f13SBarry Smith EXTERN_C_END 1798b5df2d14SHong Zhang 1799209238afSKris Buschelman /*MC 1800002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1801209238afSKris Buschelman 1802209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1803209238afSKris Buschelman and MATMPISBAIJ otherwise. 1804209238afSKris Buschelman 1805209238afSKris Buschelman Options Database Keys: 1806209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1807209238afSKris Buschelman 1808209238afSKris Buschelman Level: beginner 1809209238afSKris Buschelman 1810209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1811209238afSKris Buschelman M*/ 1812209238afSKris Buschelman 1813209238afSKris Buschelman EXTERN_C_BEGIN 1814209238afSKris Buschelman #undef __FUNCT__ 1815209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1816be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1817dfbe8321SBarry Smith { 18186849ba73SBarry Smith PetscErrorCode ierr; 18191302d50aSBarry Smith PetscMPIInt size; 1820209238afSKris Buschelman 1821209238afSKris Buschelman PetscFunctionBegin; 1822209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1823209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1824209238afSKris Buschelman if (size == 1) { 1825209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1826209238afSKris Buschelman } else { 1827209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1828209238afSKris Buschelman } 1829209238afSKris Buschelman PetscFunctionReturn(0); 1830209238afSKris Buschelman } 1831209238afSKris Buschelman EXTERN_C_END 1832209238afSKris Buschelman 18334a2ae208SSatish Balay #undef __FUNCT__ 18344a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1835b5df2d14SHong Zhang /*@C 1836b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1837b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1838b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1839b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1840b5df2d14SHong Zhang 1841b5df2d14SHong Zhang Collective on Mat 1842b5df2d14SHong Zhang 1843b5df2d14SHong Zhang Input Parameters: 1844b5df2d14SHong Zhang + A - the matrix 1845b5df2d14SHong Zhang . bs - size of blockk 1846b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1847b5df2d14SHong Zhang submatrix (same for all local rows) 1848b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18496d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18506d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18516d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1852b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1853b5df2d14SHong Zhang submatrix (same for all local rows). 1854b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1855b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1856b5df2d14SHong Zhang each block row) or PETSC_NULL. 1857b5df2d14SHong Zhang 1858b5df2d14SHong Zhang 1859b5df2d14SHong Zhang Options Database Keys: 1860b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1861b5df2d14SHong Zhang block calculations (much slower) 1862b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang Notes: 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1867b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1868b5df2d14SHong Zhang 186949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187049a6f317SBarry Smith 1871b5df2d14SHong Zhang Storage Information: 1872b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1873b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1874b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1875b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1876b5df2d14SHong Zhang 1877b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1878b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1879b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1880b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1881b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1882b5df2d14SHong Zhang 1883b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1884b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1885b5df2d14SHong Zhang 1886b5df2d14SHong Zhang .vb 1887b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1888b5df2d14SHong Zhang ------------------- 1889b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1890b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1891b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1892b5df2d14SHong Zhang ------------------- 1893b5df2d14SHong Zhang .ve 1894b5df2d14SHong Zhang 1895b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1896b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18976d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18986d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1899b5df2d14SHong Zhang 19006d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19016d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1902b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1903b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1904b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1905b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1906b5df2d14SHong Zhang matrices. 1907b5df2d14SHong Zhang 1908b5df2d14SHong Zhang Level: intermediate 1909b5df2d14SHong Zhang 1910b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1911b5df2d14SHong Zhang 1912b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1913b5df2d14SHong Zhang @*/ 1914be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1915b5df2d14SHong Zhang { 19161302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1917b5df2d14SHong Zhang 1918b5df2d14SHong Zhang PetscFunctionBegin; 1919a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1920a23d5eceSKris Buschelman if (f) { 1921a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1922b5df2d14SHong Zhang } 1923b5df2d14SHong Zhang PetscFunctionReturn(0); 1924b5df2d14SHong Zhang } 1925b5df2d14SHong Zhang 19264a2ae208SSatish Balay #undef __FUNCT__ 19274a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1928a30f8f8cSSatish Balay /*@C 1929a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1930a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1931a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1932a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1933a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1934a30f8f8cSSatish Balay 1935a30f8f8cSSatish Balay Collective on MPI_Comm 1936a30f8f8cSSatish Balay 1937a30f8f8cSSatish Balay Input Parameters: 1938a30f8f8cSSatish Balay + comm - MPI communicator 1939a30f8f8cSSatish Balay . bs - size of blockk 1940a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1941a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1942a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1943a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1944a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1945a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1946a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1947a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1948a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1949a30f8f8cSSatish Balay submatrix (same for all local rows) 1950a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19516d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19526d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19536d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1954a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1955a30f8f8cSSatish Balay submatrix (same for all local rows). 1956a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1957a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1958a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay Output Parameter: 1961a30f8f8cSSatish Balay . A - the matrix 1962a30f8f8cSSatish Balay 1963a30f8f8cSSatish Balay Options Database Keys: 1964a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1965a30f8f8cSSatish Balay block calculations (much slower) 1966a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1967a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1968a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1969a30f8f8cSSatish Balay 1970a30f8f8cSSatish Balay Notes: 1971d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1972d1be2dadSMatthew Knepley 1973a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1974a30f8f8cSSatish Balay (possibly both). 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1977a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1978a30f8f8cSSatish Balay 197949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 198049a6f317SBarry Smith 1981a30f8f8cSSatish Balay Storage Information: 1982a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1983a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1984a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1985a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1988a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1989a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1990a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1991a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1992a30f8f8cSSatish Balay 1993a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1994a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1995a30f8f8cSSatish Balay 1996a30f8f8cSSatish Balay .vb 1997a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1998a30f8f8cSSatish Balay ------------------- 1999a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2000a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2001a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2002a30f8f8cSSatish Balay ------------------- 2003a30f8f8cSSatish Balay .ve 2004a30f8f8cSSatish Balay 2005a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2006a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20076d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20086d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2009a30f8f8cSSatish Balay 20106d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20116d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2012a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2013a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2014a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2015a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2016a30f8f8cSSatish Balay matrices. 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay Level: intermediate 2019a30f8f8cSSatish Balay 2020a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2021a30f8f8cSSatish Balay 2022a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2023a30f8f8cSSatish Balay @*/ 2024a30f8f8cSSatish Balay 2025be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2026a30f8f8cSSatish Balay { 20276849ba73SBarry Smith PetscErrorCode ierr; 20281302d50aSBarry Smith PetscMPIInt size; 2029a30f8f8cSSatish Balay 2030a30f8f8cSSatish Balay PetscFunctionBegin; 2031f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2032f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2033273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2034273d9f13SBarry Smith if (size > 1) { 2035b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2036b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2037273d9f13SBarry Smith } else { 2038273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2039273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2040273d9f13SBarry Smith } 2041a30f8f8cSSatish Balay PetscFunctionReturn(0); 2042a30f8f8cSSatish Balay } 2043a30f8f8cSSatish Balay 2044a30f8f8cSSatish Balay 20454a2ae208SSatish Balay #undef __FUNCT__ 20464a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20476849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2048a30f8f8cSSatish Balay { 2049a30f8f8cSSatish Balay Mat mat; 2050a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2051dfbe8321SBarry Smith PetscErrorCode ierr; 2052521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 2053387bc808SHong Zhang PetscScalar *array; 2054a30f8f8cSSatish Balay 2055a30f8f8cSSatish Balay PetscFunctionBegin; 2056a30f8f8cSSatish Balay *newmat = 0; 2057f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2058f69a0ea3SMatthew Knepley ierr = MatSetSizes(mat,matin->m,matin->n,matin->M,matin->N);CHKERRQ(ierr); 2059be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20601d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2061e1b6402fSHong Zhang 206282327fa8SHong Zhang mat->factor = matin->factor; 2063273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206482327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20657fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20667fff6886SHong Zhang 2067b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2068521d7252SBarry Smith mat->bs = matin->bs; 2069a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2070a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2071a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2072a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2073a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2074a30f8f8cSSatish Balay 2075a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2076a30f8f8cSSatish Balay a->rend = oldmat->rend; 2077a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2078a30f8f8cSSatish Balay a->cend = oldmat->cend; 2079a30f8f8cSSatish Balay a->size = oldmat->size; 2080a30f8f8cSSatish Balay a->rank = oldmat->rank; 2081a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2082a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2083a30f8f8cSSatish Balay a->rowindices = 0; 2084a30f8f8cSSatish Balay a->rowvalues = 0; 2085a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2086a30f8f8cSSatish Balay a->barray = 0; 2087a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2088a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2089a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2090a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2091a30f8f8cSSatish Balay 2092a30f8f8cSSatish Balay /* hash table stuff */ 2093a30f8f8cSSatish Balay a->ht = 0; 2094a30f8f8cSSatish Balay a->hd = 0; 2095a30f8f8cSSatish Balay a->ht_size = 0; 2096a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2097a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2098a30f8f8cSSatish Balay a->ht_total_ct = 0; 2099a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2100a30f8f8cSSatish Balay 21011302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2102a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2103521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 2104a30f8f8cSSatish Balay if (oldmat->colmap) { 2105a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2106a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2107a30f8f8cSSatish Balay #else 21081302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21101302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2111a30f8f8cSSatish Balay #endif 2112a30f8f8cSSatish Balay } else a->colmap = 0; 2113387bc808SHong Zhang 2114a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21151302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 211652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21171302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2118a30f8f8cSSatish Balay } else a->garray = 0; 2119a30f8f8cSSatish Balay 2120a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 212152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2122a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 212352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 212482327fa8SHong Zhang 212582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 212652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2129387bc808SHong Zhang 2130387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21311ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2132387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2133387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21341ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21351ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2136387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21371ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 214052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 214152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 214252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2143387bc808SHong Zhang 2144387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2145387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2146387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214882327fa8SHong Zhang 2149a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 215052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 215252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2153b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay *newmat = mat; 2155a30f8f8cSSatish Balay PetscFunctionReturn(0); 2156a30f8f8cSSatish Balay } 2157a30f8f8cSSatish Balay 2158a30f8f8cSSatish Balay #include "petscsys.h" 2159a30f8f8cSSatish Balay 21604a2ae208SSatish Balay #undef __FUNCT__ 21614a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2162f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2163a30f8f8cSSatish Balay { 2164a30f8f8cSSatish Balay Mat A; 21656849ba73SBarry Smith PetscErrorCode ierr; 216613f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 216787828ca2SBarry Smith PetscScalar *vals,*buf; 2168a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2169a30f8f8cSSatish Balay MPI_Status status; 21702fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 217113f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21722fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21731302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21741302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21751302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 217613f74950SBarry Smith int fd; 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay PetscFunctionBegin; 2179b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay 2181a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2183a30f8f8cSSatish Balay if (!rank) { 2184b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2186552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2187a30f8f8cSSatish Balay if (header[3] < 0) { 218829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay } 2191a30f8f8cSSatish Balay 2192a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2194a30f8f8cSSatish Balay 219529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2196a30f8f8cSSatish Balay 2197a30f8f8cSSatish Balay /* 2198a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2199a30f8f8cSSatish Balay divisible by the blocksize 2200a30f8f8cSSatish Balay */ 2201a30f8f8cSSatish Balay Mbs = M/bs; 2202a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2203a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2204a30f8f8cSSatish Balay else Mbs++; 2205a30f8f8cSSatish Balay if (extra_rows &&!rank) { 220663ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr); 2207a30f8f8cSSatish Balay } 2208a30f8f8cSSatish Balay 2209a30f8f8cSSatish Balay /* determine ownership of all rows */ 2210a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2211a30f8f8cSSatish Balay m = mbs*bs; 2212a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay browners = rowners + size + 1; 2214a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay rowners[0] = 0; 2216a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2217a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2218a30f8f8cSSatish Balay rstart = rowners[rank]; 2219a30f8f8cSSatish Balay rend = rowners[rank+1]; 2220a30f8f8cSSatish Balay 2221a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22222fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay if (!rank) { 22241302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2227a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2229a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay } else { 2232a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay } 2234a30f8f8cSSatish Balay 22350222edb1SHong Zhang if (!rank) { /* procs[0] */ 2236a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22371302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22381302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2239a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2240a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2241a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2242a30f8f8cSSatish Balay } 2243a30f8f8cSSatish Balay } 2244a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2245a30f8f8cSSatish Balay 2246a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2247a30f8f8cSSatish Balay maxnz = 0; 2248a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2249a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2250a30f8f8cSSatish Balay } 22511302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay 2253a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2254a30f8f8cSSatish Balay nz = procsnz[0]; 22551302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay mycols = ibuf; 2257a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2258a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2259a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2260a30f8f8cSSatish Balay 2261a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2262a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2263a30f8f8cSSatish Balay nz = procsnz[i]; 2264a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2265a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay } 2267a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2268a30f8f8cSSatish Balay if (size != 1) { 2269a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2270a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2271a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2272a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2273a30f8f8cSSatish Balay } 2274a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22750222edb1SHong Zhang } else { /* procs[i], i>0 */ 2276a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2277a30f8f8cSSatish Balay nz = 0; 2278a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2279a30f8f8cSSatish Balay nz += locrowlens[i]; 2280a30f8f8cSSatish Balay } 22811302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2282a30f8f8cSSatish Balay mycols = ibuf; 2283a30f8f8cSSatish Balay /* receive message of column indices*/ 2284a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2285a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 228629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2287a30f8f8cSSatish Balay } 2288a30f8f8cSSatish Balay 2289a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22901302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2291a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22921302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22931302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2294a30f8f8cSSatish Balay masked1 = mask + Mbs; 2295a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2296a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2297a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2298a30f8f8cSSatish Balay dcount = 0; 2299a30f8f8cSSatish Balay odcount = 0; 2300a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2301a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2302a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23030222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2304a30f8f8cSSatish Balay if (!mask[tmp]) { 2305a30f8f8cSSatish Balay mask[tmp] = 1; 23060222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23070222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay } 2310a30f8f8cSSatish Balay rowcount++; 2311a30f8f8cSSatish Balay } 2312a30f8f8cSSatish Balay 23130222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23140222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2315a30f8f8cSSatish Balay 2316a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2317a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2318a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2319a30f8f8cSSatish Balay } 2320a30f8f8cSSatish Balay 2321a30f8f8cSSatish Balay /* create our matrix */ 2322f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2323f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 232422191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232522191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2326273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2327a30f8f8cSSatish Balay 2328a30f8f8cSSatish Balay if (!rank) { 232987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2330a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2331a30f8f8cSSatish Balay nz = procsnz[0]; 2332a30f8f8cSSatish Balay vals = buf; 2333a30f8f8cSSatish Balay mycols = ibuf; 2334a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2335a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2336a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2337a30f8f8cSSatish Balay 2338a30f8f8cSSatish Balay /* insert into matrix */ 2339a30f8f8cSSatish Balay jj = rstart*bs; 2340a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23417e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2342a30f8f8cSSatish Balay mycols += locrowlens[i]; 2343a30f8f8cSSatish Balay vals += locrowlens[i]; 2344a30f8f8cSSatish Balay jj++; 2345a30f8f8cSSatish Balay } 23467e06b45fSHong Zhang 2347a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2348a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2349a30f8f8cSSatish Balay nz = procsnz[i]; 2350a30f8f8cSSatish Balay vals = buf; 2351a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2352a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2353a30f8f8cSSatish Balay } 2354a30f8f8cSSatish Balay /* the last proc */ 2355a30f8f8cSSatish Balay if (size != 1){ 2356a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2357a30f8f8cSSatish Balay vals = buf; 2358a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2360a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2361a30f8f8cSSatish Balay } 2362a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23637e06b45fSHong Zhang 2364a30f8f8cSSatish Balay } else { 2365a30f8f8cSSatish Balay /* receive numeric values */ 236687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2367a30f8f8cSSatish Balay 2368a30f8f8cSSatish Balay /* receive message of values*/ 2369a30f8f8cSSatish Balay vals = buf; 2370a30f8f8cSSatish Balay mycols = ibuf; 2371a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2372a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 237329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2374a30f8f8cSSatish Balay 2375a30f8f8cSSatish Balay /* insert into matrix */ 2376a30f8f8cSSatish Balay jj = rstart*bs; 2377a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2378a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2379a30f8f8cSSatish Balay mycols += locrowlens[i]; 2380a30f8f8cSSatish Balay vals += locrowlens[i]; 2381a30f8f8cSSatish Balay jj++; 2382a30f8f8cSSatish Balay } 2383a30f8f8cSSatish Balay } 23847e06b45fSHong Zhang 2385a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2386a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2387a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2388a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2389a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2390a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2391a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2392a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239322191285SKris Buschelman *newmat = A; 2394a30f8f8cSSatish Balay PetscFunctionReturn(0); 2395a30f8f8cSSatish Balay } 2396a30f8f8cSSatish Balay 23974a2ae208SSatish Balay #undef __FUNCT__ 23984a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2399dcf5cc72SBarry Smith /*XXXXX@ 2400a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2401a30f8f8cSSatish Balay 2402a30f8f8cSSatish Balay Input Parameters: 2403a30f8f8cSSatish Balay . mat - the matrix 2404a30f8f8cSSatish Balay . fact - factor 2405a30f8f8cSSatish Balay 2406a30f8f8cSSatish Balay Collective on Mat 2407a30f8f8cSSatish Balay 2408a30f8f8cSSatish Balay Level: advanced 2409a30f8f8cSSatish Balay 2410a30f8f8cSSatish Balay Notes: 2411a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2412a30f8f8cSSatish Balay 2413a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2414a30f8f8cSSatish Balay 2415a30f8f8cSSatish Balay .seealso: MatSetOption() 2416dcf5cc72SBarry Smith @XXXXX*/ 2417dcf5cc72SBarry Smith 241824d5174aSHong Zhang 24194a2ae208SSatish Balay #undef __FUNCT__ 24204a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2421dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 242224d5174aSHong Zhang { 242324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2424f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2425ca54ac64SHong Zhang PetscReal atmp; 242687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2427dfbe8321SBarry Smith PetscErrorCode ierr; 24281302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24291302d50aSBarry Smith PetscMPIInt rank,size; 24301302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 243187828ca2SBarry Smith PetscScalar *va; 24328a1c53f2SBarry Smith MatScalar *ba; 2433f4c0e9e4SHong Zhang MPI_Status stat; 243424d5174aSHong Zhang 243524d5174aSHong Zhang PetscFunctionBegin; 2436d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24371ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2438f4c0e9e4SHong Zhang 243956faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 244056faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2441f4c0e9e4SHong Zhang 2442521d7252SBarry Smith bs = A->bs; 2443f4c0e9e4SHong Zhang mbs = a->mbs; 2444f4c0e9e4SHong Zhang Mbs = a->Mbs; 2445f4c0e9e4SHong Zhang ba = b->a; 2446f4c0e9e4SHong Zhang bi = b->i; 2447f4c0e9e4SHong Zhang bj = b->j; 2448f4c0e9e4SHong Zhang 2449f4c0e9e4SHong Zhang /* find ownerships */ 2450f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2451f4c0e9e4SHong Zhang 2452f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2454ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2455f4c0e9e4SHong Zhang 2456f4c0e9e4SHong Zhang /* row_max for B */ 2457b8475685SHong Zhang if (rank != size-1){ 2458f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2459f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2460f4c0e9e4SHong Zhang brow = bs*i; 2461f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2462f4c0e9e4SHong Zhang bcol = bs*(*bj); 2463f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2464ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2466f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2467f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2468ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2469ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2470f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2471f4c0e9e4SHong Zhang } 2472f4c0e9e4SHong Zhang } 2473f4c0e9e4SHong Zhang bj++; 2474f4c0e9e4SHong Zhang } 2475f4c0e9e4SHong Zhang } 2476f4c0e9e4SHong Zhang 2477f4c0e9e4SHong Zhang /* send values to its owners */ 2478f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2479f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2480ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 248156faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2482ca54ac64SHong Zhang } 2483f4c0e9e4SHong Zhang } 2484f4c0e9e4SHong Zhang 2485f4c0e9e4SHong Zhang /* receive values */ 2486ca54ac64SHong Zhang if (rank){ 2487f4c0e9e4SHong Zhang rvalues = work; 2488ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2489f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 249056faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2491f4c0e9e4SHong Zhang /* process values */ 2492f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2493ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2494f4c0e9e4SHong Zhang } 2495f4c0e9e4SHong Zhang } 2496ca54ac64SHong Zhang } 2497f4c0e9e4SHong Zhang 24981ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2499ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 250024d5174aSHong Zhang PetscFunctionReturn(0); 250124d5174aSHong Zhang } 25022798e883SHong Zhang 25032798e883SHong Zhang #undef __FUNCT__ 25042798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 25051302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25062798e883SHong Zhang { 25072798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2508dfbe8321SBarry Smith PetscErrorCode ierr; 2509521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2510efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2511ffe4fb16SHong Zhang Vec bb1; 2512ffe4fb16SHong Zhang 2513ffe4fb16SHong Zhang PetscFunctionBegin; 251477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2515ffe4fb16SHong Zhang if (bs > 1) 2516ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2517ffe4fb16SHong Zhang 2518ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2519ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2520ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2521ffe4fb16SHong Zhang its--; 2522ffe4fb16SHong Zhang } 2523ffe4fb16SHong Zhang 2524ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2525ffe4fb16SHong Zhang while (its--){ 2526ffe4fb16SHong Zhang 2527ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2528ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2529ffe4fb16SHong Zhang 2530ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25311ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25321ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2533ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25341ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang 2536efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang 2538ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25391ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25401ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2541ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang 2544ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25452dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2546ffe4fb16SHong Zhang 2547ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25481ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25491ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2551ffe4fb16SHong Zhang 2552ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2553ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2554ffe4fb16SHong Zhang 2555ffe4fb16SHong Zhang /* local diagonal sweep */ 2556ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2557ffe4fb16SHong Zhang } 2558ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2559ffe4fb16SHong Zhang } else { 2560ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2561ffe4fb16SHong Zhang } 2562ffe4fb16SHong Zhang PetscFunctionReturn(0); 2563ffe4fb16SHong Zhang } 2564ffe4fb16SHong Zhang 2565ffe4fb16SHong Zhang #undef __FUNCT__ 2566ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25671302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2568ffe4fb16SHong Zhang { 2569ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2570dfbe8321SBarry Smith PetscErrorCode ierr; 25712798e883SHong Zhang Vec lvec1,bb1; 25722798e883SHong Zhang 25732798e883SHong Zhang PetscFunctionBegin; 257477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2575521d7252SBarry Smith if (matin->bs > 1) 25762798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25772798e883SHong Zhang 2578c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25792798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2580bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25812798e883SHong Zhang its--; 25822798e883SHong Zhang } 25832798e883SHong Zhang 25842798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25852798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25862798e883SHong Zhang while (its--){ 25872798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25882798e883SHong Zhang 25892798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25902798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2591efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25922798e883SHong Zhang 25932798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25942798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25952798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25962798e883SHong Zhang 25972798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2598efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25992798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26002798e883SHong Zhang 26012798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26022798e883SHong Zhang 2603c14dc6b6SHong Zhang /* diagonal sweep */ 2604bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26052798e883SHong Zhang } 26062798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26072798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2608c14dc6b6SHong Zhang } else { 2609c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2610c14dc6b6SHong Zhang } 26112798e883SHong Zhang PetscFunctionReturn(0); 26122798e883SHong Zhang } 26132798e883SHong Zhang 2614