xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision d1a032db6cd7c39db5bfaa476c8e42d0c0ea531b)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay 
666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith 
1026cec326SBarry Smith   PetscFunctionBegin;
1126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith   PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith   PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith   PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith   PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith   PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith   PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith   PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith   PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith 
4426cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
52*d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
5326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith 
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith 
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70*d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini 
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini   Mat       preallocator;
78b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
79b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
80b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   PetscFunctionBegin;
83b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini   }
90b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini     PetscInt           ncols;
102b147fbf3SStefano Zampini     const PetscInt    *row;
103b147fbf3SStefano Zampini     const PetscScalar *vals;
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini     }
111b147fbf3SStefano Zampini   }
1129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini   Mat      B;
122b147fbf3SStefano Zampini   PetscInt r;
123b147fbf3SStefano Zampini 
124b147fbf3SStefano Zampini   PetscFunctionBegin;
125b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini     PetscInt  bs;
128b147fbf3SStefano Zampini 
1299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet     if (!isdense) {
1389566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet     } else {
1429566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet     }
14428d58a37SPierre Jolivet   } else {
14528d58a37SPierre Jolivet     B = *newmat;
1469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet   }
148b147fbf3SStefano Zampini 
1499566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini     PetscInt           ncols;
152b147fbf3SStefano Zampini     const PetscInt    *row;
153b147fbf3SStefano Zampini     const PetscScalar *vals;
154b147fbf3SStefano Zampini 
1559566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini       PetscInt i;
16048a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini     } else {
1629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini     }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini   }
1699566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini 
173b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini   } else {
176b147fbf3SStefano Zampini     *newmat = B;
177b147fbf3SStefano Zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini 
18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay 
185a30f8f8cSSatish Balay   PetscFunctionBegin;
1869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay 
19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay 
195a30f8f8cSSatish Balay   PetscFunctionBegin;
1969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay 
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet   do { \
203a30f8f8cSSatish Balay     brow = row / bs; \
2049371c9d4SSatish Balay     rp   = aj + ai[brow]; \
2059371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay     rmax = aimax[brow]; \
2079371c9d4SSatish Balay     nrow = ailen[brow]; \
208a30f8f8cSSatish Balay     bcol = col / bs; \
2099371c9d4SSatish Balay     ridx = row % bs; \
2109371c9d4SSatish Balay     cidx = col % bs; \
2119371c9d4SSatish Balay     low  = 0; \
2129371c9d4SSatish Balay     high = nrow; \
213a30f8f8cSSatish Balay     while (high - low > 3) { \
214a30f8f8cSSatish Balay       t = (low + high) / 2; \
215a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay       else low = t; \
217a30f8f8cSSatish Balay     } \
218a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay         else *bap = value; \
224a30f8f8cSSatish Balay         goto a_noinsert; \
225a30f8f8cSSatish Balay       } \
226a30f8f8cSSatish Balay     } \
227a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay     N = nrow++ - 1; \
231a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
236a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
237a30f8f8cSSatish Balay   a_noinsert:; \
238a30f8f8cSSatish Balay     ailen[brow] = nrow; \
239a8f51744SPierre Jolivet   } while (0)
240e5e170daSBarry Smith 
241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
242a8f51744SPierre Jolivet   do { \
243a30f8f8cSSatish Balay     brow = row / bs; \
2449371c9d4SSatish Balay     rp   = bj + bi[brow]; \
2459371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
2469371c9d4SSatish Balay     rmax = bimax[brow]; \
2479371c9d4SSatish Balay     nrow = bilen[brow]; \
248a30f8f8cSSatish Balay     bcol = col / bs; \
2499371c9d4SSatish Balay     ridx = row % bs; \
2509371c9d4SSatish Balay     cidx = col % bs; \
2519371c9d4SSatish Balay     low  = 0; \
2529371c9d4SSatish Balay     high = nrow; \
253a30f8f8cSSatish Balay     while (high - low > 3) { \
254a30f8f8cSSatish Balay       t = (low + high) / 2; \
255a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
256a30f8f8cSSatish Balay       else low = t; \
257a30f8f8cSSatish Balay     } \
258a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
259a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
260a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
261a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
262a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
263a30f8f8cSSatish Balay         else *bap = value; \
264a30f8f8cSSatish Balay         goto b_noinsert; \
265a30f8f8cSSatish Balay       } \
266a30f8f8cSSatish Balay     } \
267a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2685f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
269fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
270a30f8f8cSSatish Balay     N = nrow++ - 1; \
271a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2729566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2749566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
275a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
276a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
277a30f8f8cSSatish Balay   b_noinsert:; \
278a30f8f8cSSatish Balay     bilen[brow] = nrow; \
279a8f51744SPierre Jolivet   } while (0)
280a30f8f8cSSatish Balay 
281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
282da81f932SPierre Jolivet    Any a(i,j) with i>j input by user is ignored or generates an error
283a30f8f8cSSatish Balay */
28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
285d71ae5a4SJacob Faibussowitsch {
286a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
287a30f8f8cSSatish Balay   MatScalar     value;
288ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2891302d50aSBarry Smith   PetscInt      i, j, row, col;
290d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
291d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
292d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
293a30f8f8cSSatish Balay 
294a30f8f8cSSatish Balay   /* Some Variables required in the macro */
295a30f8f8cSSatish Balay   Mat           A     = baij->A;
29657508eceSPierre Jolivet   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)A->data;
2971302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
298a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
299a30f8f8cSSatish Balay 
300a30f8f8cSSatish Balay   Mat          B     = baij->B;
30157508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
3021302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
303a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
304a30f8f8cSSatish Balay 
3051302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
3061302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
307a30f8f8cSSatish Balay   MatScalar *ap, *bap;
308a30f8f8cSSatish Balay 
309a30f8f8cSSatish Balay   /* for stash */
3100298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
3110298fd71SBarry Smith   MatScalar *v_loc = NULL;
312a30f8f8cSSatish Balay 
313a30f8f8cSSatish Balay   PetscFunctionBegin;
314a30f8f8cSSatish Balay   if (!baij->donotstash) {
31559ffdab8SBarry Smith     if (n > baij->n_loc) {
3169566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
3179566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
3189566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
3199566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
32026fbe8dcSKarl Rupp 
32159ffdab8SBarry Smith       baij->n_loc = n;
32259ffdab8SBarry Smith     }
32359ffdab8SBarry Smith     in_loc = baij->in_loc;
32459ffdab8SBarry Smith     v_loc  = baij->v_loc;
325a30f8f8cSSatish Balay   }
326a30f8f8cSSatish Balay 
327a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
328a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3295f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
330a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
331a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
332a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
33301b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
334966bd95aSPierre Jolivet           PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33501b2bd88SHong Zhang           continue; /* ignore lower triangular blocks */
33601b2bd88SHong Zhang         }
337a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
338a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
3399371c9d4SSatish Balay           brow = row / bs;
3409371c9d4SSatish Balay           bcol = col / bs;
341a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
342db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
343db4deed7SKarl Rupp           else value = v[i + j * m];
344d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3459566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
346f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
347f7d195e4SLawrence Mitchell           continue;
348f7d195e4SLawrence Mitchell         } else {
349f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
350f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
351a30f8f8cSSatish Balay           if (mat->was_assembled) {
35248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
353a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
354eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35571730473SSatish Balay             col = col - 1;
356a30f8f8cSSatish Balay #else
35771730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
358a30f8f8cSSatish Balay #endif
359f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) {
3609566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
361a30f8f8cSSatish Balay               col = in[j];
362a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
363a30f8f8cSSatish Balay               B     = baij->B;
36457508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
3659371c9d4SSatish Balay               bimax = b->imax;
3669371c9d4SSatish Balay               bi    = b->i;
3679371c9d4SSatish Balay               bilen = b->ilen;
3689371c9d4SSatish Balay               bj    = b->j;
369a30f8f8cSSatish Balay               ba    = b->a;
37071730473SSatish Balay             } else col += in[j] % bs;
371a30f8f8cSSatish Balay           } else col = in[j];
372db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
373db4deed7SKarl Rupp           else value = v[i + j * m];
374d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3759566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
376a30f8f8cSSatish Balay         }
377a30f8f8cSSatish Balay       }
378a30f8f8cSSatish Balay     } else { /* off processor entry */
3795f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
380a30f8f8cSSatish Balay       if (!baij->donotstash) {
3815080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
382a30f8f8cSSatish Balay         n_loc          = 0;
383a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
384f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
385a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
386a30f8f8cSSatish Balay           if (roworiented) {
387a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
388a30f8f8cSSatish Balay           } else {
389a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
390a30f8f8cSSatish Balay           }
391a30f8f8cSSatish Balay           n_loc++;
392a30f8f8cSSatish Balay         }
3939566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     }
396a30f8f8cSSatish Balay   }
3973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
398a30f8f8cSSatish Balay }
399a30f8f8cSSatish Balay 
400d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
401d71ae5a4SJacob Faibussowitsch {
40236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
40336bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40436bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40536bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40636bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
40736bd2089SBarry Smith   const PetscScalar *value       = v;
40836bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
40936bd2089SBarry Smith 
41036bd2089SBarry Smith   PetscFunctionBegin;
41136bd2089SBarry Smith   if (col < row) {
412966bd95aSPierre Jolivet     PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
413966bd95aSPierre Jolivet     PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41436bd2089SBarry Smith   }
41536bd2089SBarry Smith   rp    = aj + ai[row];
41636bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
41736bd2089SBarry Smith   rmax  = imax[row];
41836bd2089SBarry Smith   nrow  = ailen[row];
41936bd2089SBarry Smith   value = v;
42036bd2089SBarry Smith   low   = 0;
42136bd2089SBarry Smith   high  = nrow;
42236bd2089SBarry Smith 
42336bd2089SBarry Smith   while (high - low > 7) {
42436bd2089SBarry Smith     t = (low + high) / 2;
42536bd2089SBarry Smith     if (rp[t] > col) high = t;
42636bd2089SBarry Smith     else low = t;
42736bd2089SBarry Smith   }
42836bd2089SBarry Smith   for (i = low; i < high; i++) {
42936bd2089SBarry Smith     if (rp[i] > col) break;
43036bd2089SBarry Smith     if (rp[i] == col) {
43136bd2089SBarry Smith       bap = ap + bs2 * i;
43236bd2089SBarry Smith       if (roworiented) {
43336bd2089SBarry Smith         if (is == ADD_VALUES) {
43436bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
435ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43636bd2089SBarry Smith           }
43736bd2089SBarry Smith         } else {
43836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
439ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44036bd2089SBarry Smith           }
44136bd2089SBarry Smith         }
44236bd2089SBarry Smith       } else {
44336bd2089SBarry Smith         if (is == ADD_VALUES) {
44436bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
445ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44636bd2089SBarry Smith           }
44736bd2089SBarry Smith         } else {
44836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
449ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45036bd2089SBarry Smith           }
45136bd2089SBarry Smith         }
45236bd2089SBarry Smith       }
45336bd2089SBarry Smith       goto noinsert2;
45436bd2089SBarry Smith     }
45536bd2089SBarry Smith   }
45636bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4575f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
45836bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4599371c9d4SSatish Balay   N = nrow++ - 1;
4609371c9d4SSatish Balay   high++;
46136bd2089SBarry Smith   /* shift up all the later entries in this row */
4629566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4639566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46436bd2089SBarry Smith   rp[i] = col;
46536bd2089SBarry Smith   bap   = ap + bs2 * i;
46636bd2089SBarry Smith   if (roworiented) {
46736bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
468ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
46936bd2089SBarry Smith     }
47036bd2089SBarry Smith   } else {
47136bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
472ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47336bd2089SBarry Smith     }
47436bd2089SBarry Smith   }
47536bd2089SBarry Smith noinsert2:;
47636bd2089SBarry Smith   ailen[row] = nrow;
4773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47836bd2089SBarry Smith }
47936bd2089SBarry Smith 
48036bd2089SBarry Smith /*
48136bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
48236bd2089SBarry Smith */
483d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
484d71ae5a4SJacob Faibussowitsch {
48536bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
48636bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
48736bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
48836bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
48936bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
49036bd2089SBarry Smith   const PetscScalar *value       = v;
49136bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
49236bd2089SBarry Smith 
49336bd2089SBarry Smith   PetscFunctionBegin;
49436bd2089SBarry Smith   rp    = aj + ai[row];
49536bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
49636bd2089SBarry Smith   rmax  = imax[row];
49736bd2089SBarry Smith   nrow  = ailen[row];
49836bd2089SBarry Smith   low   = 0;
49936bd2089SBarry Smith   high  = nrow;
50036bd2089SBarry Smith   value = v;
50136bd2089SBarry Smith   while (high - low > 7) {
50236bd2089SBarry Smith     t = (low + high) / 2;
50336bd2089SBarry Smith     if (rp[t] > col) high = t;
50436bd2089SBarry Smith     else low = t;
50536bd2089SBarry Smith   }
50636bd2089SBarry Smith   for (i = low; i < high; i++) {
50736bd2089SBarry Smith     if (rp[i] > col) break;
50836bd2089SBarry Smith     if (rp[i] == col) {
50936bd2089SBarry Smith       bap = ap + bs2 * i;
51036bd2089SBarry Smith       if (roworiented) {
51136bd2089SBarry Smith         if (is == ADD_VALUES) {
51236bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
513ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51436bd2089SBarry Smith           }
51536bd2089SBarry Smith         } else {
51636bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
517ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
51836bd2089SBarry Smith           }
51936bd2089SBarry Smith         }
52036bd2089SBarry Smith       } else {
52136bd2089SBarry Smith         if (is == ADD_VALUES) {
52236bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
523ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52436bd2089SBarry Smith             bap += bs;
52536bd2089SBarry Smith           }
52636bd2089SBarry Smith         } else {
52736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
528ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
52936bd2089SBarry Smith             bap += bs;
53036bd2089SBarry Smith           }
53136bd2089SBarry Smith         }
53236bd2089SBarry Smith       }
53336bd2089SBarry Smith       goto noinsert2;
53436bd2089SBarry Smith     }
53536bd2089SBarry Smith   }
53636bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
5375f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
53836bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5399371c9d4SSatish Balay   N = nrow++ - 1;
5409371c9d4SSatish Balay   high++;
54136bd2089SBarry Smith   /* shift up all the later entries in this row */
5429566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5439566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54436bd2089SBarry Smith   rp[i] = col;
54536bd2089SBarry Smith   bap   = ap + bs2 * i;
54636bd2089SBarry Smith   if (roworiented) {
54736bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
548ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
54936bd2089SBarry Smith     }
55036bd2089SBarry Smith   } else {
55136bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
552ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55336bd2089SBarry Smith     }
55436bd2089SBarry Smith   }
55536bd2089SBarry Smith noinsert2:;
55636bd2089SBarry Smith   ailen[row] = nrow;
5573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55836bd2089SBarry Smith }
55936bd2089SBarry Smith 
56036bd2089SBarry Smith /*
56136bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
56236bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56336bd2089SBarry Smith */
56466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
565d71ae5a4SJacob Faibussowitsch {
5660880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
567f15d580aSBarry Smith   const MatScalar *value;
568f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
569ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
570899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
571476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
572476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5730880e062SHong Zhang 
574a30f8f8cSSatish Balay   PetscFunctionBegin;
5750880e062SHong Zhang   if (!barray) {
5769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5770880e062SHong Zhang     baij->barray = barray;
5780880e062SHong Zhang   }
5790880e062SHong Zhang 
5800880e062SHong Zhang   if (roworiented) {
5810880e062SHong Zhang     stepval = (n - 1) * bs;
5820880e062SHong Zhang   } else {
5830880e062SHong Zhang     stepval = (m - 1) * bs;
5840880e062SHong Zhang   }
5850880e062SHong Zhang   for (i = 0; i < m; i++) {
5860880e062SHong Zhang     if (im[i] < 0) continue;
5876bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5880880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5890880e062SHong Zhang       row = im[i] - rstart;
5900880e062SHong Zhang       for (j = 0; j < n; j++) {
591f3f98c53SJed Brown         if (im[i] > in[j]) {
592966bd95aSPierre Jolivet           PetscCheck(ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
593966bd95aSPierre Jolivet           continue; /* ignore lower triangular blocks */
594f3f98c53SJed Brown         }
5950880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
596966bd95aSPierre Jolivet         if (roworiented && n == 1) {
597f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
5980880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
599f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
6000880e062SHong Zhang         } else { /* Here a copy is required */
6010880e062SHong Zhang           if (roworiented) {
6020880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
6030880e062SHong Zhang           } else {
6040880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
6050880e062SHong Zhang           }
6060880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
607ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6080880e062SHong Zhang           }
6090880e062SHong Zhang           barray -= bs2;
6100880e062SHong Zhang         }
6110880e062SHong Zhang 
6120880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
6130880e062SHong Zhang           col = in[j] - cstart;
6149566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
615f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
616f7d195e4SLawrence Mitchell           continue;
617f7d195e4SLawrence Mitchell         } else {
618f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6190880e062SHong Zhang           if (mat->was_assembled) {
62048a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6210880e062SHong Zhang 
6220880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
623eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
624b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
6250880e062SHong Zhang #else
626b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
6270880e062SHong Zhang #endif
628f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
6299566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6300880e062SHong Zhang               col = in[j];
6310880e062SHong Zhang             }
63226fbe8dcSKarl Rupp           } else col = in[j];
6339566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6340880e062SHong Zhang         }
6350880e062SHong Zhang       }
6360880e062SHong Zhang     } else {
6375f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6380880e062SHong Zhang       if (!baij->donotstash) {
6390880e062SHong Zhang         if (roworiented) {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410880e062SHong Zhang         } else {
6429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6430880e062SHong Zhang         }
6440880e062SHong Zhang       }
6450880e062SHong Zhang     }
6460880e062SHong Zhang   }
6473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
648a30f8f8cSSatish Balay }
649a30f8f8cSSatish Balay 
65066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
651d71ae5a4SJacob Faibussowitsch {
652f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
653d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
654d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
655a30f8f8cSSatish Balay 
656a30f8f8cSSatish Balay   PetscFunctionBegin;
657a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
65854c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
65954c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
660966bd95aSPierre Jolivet     PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
661a30f8f8cSSatish Balay     row = idxm[i] - bsrstart;
662a30f8f8cSSatish Balay     for (j = 0; j < n; j++) {
66354c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
66454c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
665a30f8f8cSSatish Balay       if (idxn[j] >= bscstart && idxn[j] < bscend) {
666a30f8f8cSSatish Balay         col = idxn[j] - bscstart;
6679566063dSJacob Faibussowitsch         PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
668a30f8f8cSSatish Balay       } else {
66948a46eb9SPierre Jolivet         if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
670a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
671eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
672a30f8f8cSSatish Balay         data--;
673a30f8f8cSSatish Balay #else
674a30f8f8cSSatish Balay         data = baij->colmap[idxn[j] / bs] - 1;
675a30f8f8cSSatish Balay #endif
676966bd95aSPierre Jolivet         if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0;
677a30f8f8cSSatish Balay         else {
678a30f8f8cSSatish Balay           col = data + idxn[j] % bs;
6799566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
680a30f8f8cSSatish Balay         }
681a30f8f8cSSatish Balay       }
682a30f8f8cSSatish Balay     }
683a30f8f8cSSatish Balay   }
6843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
685a30f8f8cSSatish Balay }
686a30f8f8cSSatish Balay 
68766976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
688d71ae5a4SJacob Faibussowitsch {
689a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
690a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
691a30f8f8cSSatish Balay 
692a30f8f8cSSatish Balay   PetscFunctionBegin;
693a30f8f8cSSatish Balay   if (baij->size == 1) {
6949566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
695a30f8f8cSSatish Balay   } else {
696a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
6979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
6989566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
6999371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7009371c9d4SSatish Balay       lnorm2++; /* squar power of norm(A) */
7019566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
7029371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7039371c9d4SSatish Balay       lnorm2--; /* squar power of norm(B) */
704462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7058f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7069566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
7070b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7080b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7090b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
710e91c04dfSPierre Jolivet       PetscReal    *rsum, vabs;
711899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
712d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7130b8dc8d2SHong Zhang       MatScalar    *v;
7140b8dc8d2SHong Zhang 
715e91c04dfSPierre Jolivet       PetscCall(PetscMalloc1(mat->cmap->N, &rsum));
7169566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum, mat->cmap->N));
7170b8dc8d2SHong Zhang       /* Amat */
7189371c9d4SSatish Balay       v  = amat->a;
7199371c9d4SSatish Balay       jj = amat->j;
7200b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7210b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7220b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
7230b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7249371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
7259371c9d4SSatish Balay           jj++;
7260b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7270b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7289371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7299371c9d4SSatish Balay               v++;
7300b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7310b8dc8d2SHong Zhang               /* non-diagonal block */
7320b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7330b8dc8d2SHong Zhang             }
7340b8dc8d2SHong Zhang           }
7350b8dc8d2SHong Zhang         }
7369566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7370b8dc8d2SHong Zhang       }
7380b8dc8d2SHong Zhang       /* Bmat */
7399371c9d4SSatish Balay       v  = bmat->a;
7409371c9d4SSatish Balay       jj = bmat->j;
7410b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7420b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7430b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
7440b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7459371c9d4SSatish Balay           gcol = bs * garray[*jj];
7469371c9d4SSatish Balay           jj++;
7470b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7480b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7499371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7509371c9d4SSatish Balay               v++;
7510b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7520b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
7530b8dc8d2SHong Zhang             }
7540b8dc8d2SHong Zhang           }
7550b8dc8d2SHong Zhang         }
7569566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7570b8dc8d2SHong Zhang       }
758e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7590b8dc8d2SHong Zhang       *norm = 0.0;
760d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
761e91c04dfSPierre Jolivet         if (rsum[col] > *norm) *norm = rsum[col];
7620b8dc8d2SHong Zhang       }
763e91c04dfSPierre Jolivet       PetscCall(PetscFree(rsum));
764f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
765a30f8f8cSSatish Balay   }
7663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
767a30f8f8cSSatish Balay }
768a30f8f8cSSatish Balay 
76966976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
770d71ae5a4SJacob Faibussowitsch {
771a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7721302d50aSBarry Smith   PetscInt      nstash, reallocs;
773a30f8f8cSSatish Balay 
774a30f8f8cSSatish Balay   PetscFunctionBegin;
7753ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
776a30f8f8cSSatish Balay 
7779566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7789566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7799566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7809566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7819566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7829566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
784a30f8f8cSSatish Balay }
785a30f8f8cSSatish Balay 
78666976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
787d71ae5a4SJacob Faibussowitsch {
788a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
789a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
79013f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
791e44c0bd4SBarry Smith   PetscInt     *row, *col;
792c0edf612SJunchao Zhang   PetscBool     all_assembled;
79313f74950SBarry Smith   PetscMPIInt   n;
794ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
795a30f8f8cSSatish Balay   MatScalar    *val;
796a30f8f8cSSatish Balay 
79791c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
798a30f8f8cSSatish Balay   PetscFunctionBegin;
7994cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
800a30f8f8cSSatish Balay     while (1) {
8019566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
802a30f8f8cSSatish Balay       if (!flg) break;
803a30f8f8cSSatish Balay 
804a30f8f8cSSatish Balay       for (i = 0; i < n;) {
805a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
80626fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
80726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
80826fbe8dcSKarl Rupp         }
809a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
810a30f8f8cSSatish Balay         else ncols = n - i;
811a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
8129566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
813a30f8f8cSSatish Balay         i = j;
814a30f8f8cSSatish Balay       }
815a30f8f8cSSatish Balay     }
8169566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
817a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
8185e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
819a30f8f8cSSatish Balay        restore the original flags */
820a30f8f8cSSatish Balay     r1 = baij->roworiented;
821a30f8f8cSSatish Balay     r2 = a->roworiented;
82291c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
82326fbe8dcSKarl Rupp 
824a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
825a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
82626fbe8dcSKarl Rupp 
827b638e6b4SJunchao Zhang     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworiented */
828a30f8f8cSSatish Balay     while (1) {
8299566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
830a30f8f8cSSatish Balay       if (!flg) break;
831a30f8f8cSSatish Balay 
832a30f8f8cSSatish Balay       for (i = 0; i < n;) {
833a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
83426fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
83526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
83626fbe8dcSKarl Rupp         }
837a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
838a30f8f8cSSatish Balay         else ncols = n - i;
8399566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
840a30f8f8cSSatish Balay         i = j;
841a30f8f8cSSatish Balay       }
842a30f8f8cSSatish Balay     }
8439566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
84426fbe8dcSKarl Rupp 
845a30f8f8cSSatish Balay     baij->roworiented = r1;
846a30f8f8cSSatish Balay     a->roworiented    = r2;
84726fbe8dcSKarl Rupp 
848b638e6b4SJunchao Zhang     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */
849a30f8f8cSSatish Balay   }
850a30f8f8cSSatish Balay 
8519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
8529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
853a30f8f8cSSatish Balay 
854b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
8556aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
856a30f8f8cSSatish Balay   /*
857a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
858b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
859a30f8f8cSSatish Balay   */
860a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8615440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
862c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
863a30f8f8cSSatish Balay   }
864a30f8f8cSSatish Balay 
865ac530a7eSPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */
8669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
868a30f8f8cSSatish Balay 
8699566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
87026fbe8dcSKarl Rupp 
871f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8724f9cfa9eSBarry Smith 
8734f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
874f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
875e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
876462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
877e56f5c9eSBarry Smith   }
8783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
879a30f8f8cSSatish Balay }
880a30f8f8cSSatish Balay 
881dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8829804daf3SBarry Smith #include <petscdraw.h>
883d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
884d71ae5a4SJacob Faibussowitsch {
885a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
886d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8877da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
8889f196a02SMartin Diehl   PetscBool         isascii, isdraw;
889b0a32e0cSBarry Smith   PetscViewer       sviewer;
890f3ef73ceSBarry Smith   PetscViewerFormat format;
891a30f8f8cSSatish Balay 
892a30f8f8cSSatish Balay   PetscFunctionBegin;
8939f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
8949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
8959f196a02SMartin Diehl   if (isascii) {
8969566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
897456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
898a30f8f8cSSatish Balay       MatInfo info;
8999566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
9009566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9019566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9029371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
903835f2295SStefano Zampini                                                    mat->rmap->bs, info.memory));
9049566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9059566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9069566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9089566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9109566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9119566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9123ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
913fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9149566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
9153ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
916c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9173ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
918a30f8f8cSSatish Balay     }
919a30f8f8cSSatish Balay   }
920a30f8f8cSSatish Balay 
921a30f8f8cSSatish Balay   if (isdraw) {
922b0a32e0cSBarry Smith     PetscDraw draw;
923ace3abfcSBarry Smith     PetscBool isnull;
9249566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9259566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
9263ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
927a30f8f8cSSatish Balay   }
928a30f8f8cSSatish Balay 
9297da1fb6eSBarry Smith   {
930a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
931a30f8f8cSSatish Balay     Mat           A;
93265d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
93365d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
934d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
935a30f8f8cSSatish Balay     MatScalar    *a;
9363e219373SBarry Smith     const char   *matname;
937a30f8f8cSSatish Balay 
938f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9399566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
940dd400576SPatrick Sanan     if (rank == 0) {
9419566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
942a30f8f8cSSatish Balay     } else {
9439566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
944a30f8f8cSSatish Balay     }
9459566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
9469566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9479566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
948a30f8f8cSSatish Balay 
949a30f8f8cSSatish Balay     /* copy over the A part */
95065d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9519371c9d4SSatish Balay     ai   = Aloc->i;
9529371c9d4SSatish Balay     aj   = Aloc->j;
9539371c9d4SSatish Balay     a    = Aloc->a;
9549566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
955a30f8f8cSSatish Balay 
956a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
957e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
95826fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
959a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
960e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
961a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9629566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
96326fbe8dcSKarl Rupp           col++;
96426fbe8dcSKarl Rupp           a += bs;
965a30f8f8cSSatish Balay         }
966a30f8f8cSSatish Balay       }
967a30f8f8cSSatish Balay     }
968a30f8f8cSSatish Balay     /* copy over the B part */
96965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9709371c9d4SSatish Balay     ai   = Bloc->i;
9719371c9d4SSatish Balay     aj   = Bloc->j;
9729371c9d4SSatish Balay     a    = Bloc->a;
973a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
974e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
97526fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
976a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
977a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
978a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9799566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
98026fbe8dcSKarl Rupp           col++;
98126fbe8dcSKarl Rupp           a += bs;
982a30f8f8cSSatish Balay         }
983a30f8f8cSSatish Balay       }
984a30f8f8cSSatish Balay     }
9859566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9869566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9879566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
988a30f8f8cSSatish Balay     /*
989a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
990b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
991a30f8f8cSSatish Balay     */
9929566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
99323a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
994dd400576SPatrick Sanan     if (rank == 0) {
995f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname));
996f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer));
997a30f8f8cSSatish Balay     }
9989566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
9999566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
1000a30f8f8cSSatish Balay   }
10013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1002a30f8f8cSSatish Balay }
1003a30f8f8cSSatish Balay 
1004618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1005618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1006d1654148SHong Zhang 
100766976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1008d71ae5a4SJacob Faibussowitsch {
10099f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
1010a30f8f8cSSatish Balay 
1011a30f8f8cSSatish Balay   PetscFunctionBegin;
10129f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
10139566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10149566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10159566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1016ac530a7eSPierre Jolivet   if (isascii || isdraw || issocket) PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
1017ac530a7eSPierre Jolivet   else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1019a30f8f8cSSatish Balay }
1020a30f8f8cSSatish Balay 
1021789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX)
1022789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1023d71ae5a4SJacob Faibussowitsch {
1024547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1025eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10266de40e93SBarry Smith   PetscScalar       *from;
10276de40e93SBarry Smith   const PetscScalar *x;
1028547795f9SHong Zhang 
1029547795f9SHong Zhang   PetscFunctionBegin;
1030547795f9SHong Zhang   /* diagonal part */
10319566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1032629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1033629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1034629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1035547795f9SHong Zhang 
1036547795f9SHong Zhang   /* subdiagonal part */
10375f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10389566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1039547795f9SHong Zhang 
1040547795f9SHong Zhang   /* copy x into the vec slvec0 */
10419566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10429566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1043547795f9SHong Zhang 
10449566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1047547795f9SHong Zhang 
10489566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10499566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1050547795f9SHong Zhang   /* supperdiagonal part */
10519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1053547795f9SHong Zhang }
1054789afff4SPierre Jolivet #endif
1055547795f9SHong Zhang 
105666976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1057d71ae5a4SJacob Faibussowitsch {
1058a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1059eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1060d9ca1df4SBarry Smith   PetscScalar       *from;
1061d9ca1df4SBarry Smith   const PetscScalar *x;
1062a9d4b620SHong Zhang 
1063a9d4b620SHong Zhang   PetscFunctionBegin;
1064a9d4b620SHong Zhang   /* diagonal part */
10659566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1066629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1067629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1068629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1069a9d4b620SHong Zhang 
1070a9d4b620SHong Zhang   /* subdiagonal part */
10719566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1072fc165ae2SBarry Smith 
1073a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10759566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1076a9d4b620SHong Zhang 
10779566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10789566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10799566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1080fc165ae2SBarry Smith 
10819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1083a9d4b620SHong Zhang   /* supperdiagonal part */
10849566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1086a9d4b620SHong Zhang }
1087a9d4b620SHong Zhang 
108866976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
108966976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1090d71ae5a4SJacob Faibussowitsch {
1091eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1092eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1093629a200eSBarry Smith   PetscScalar       *from;
1094eb1ec7c1SStefano Zampini   const PetscScalar *x;
1095eb1ec7c1SStefano Zampini 
1096eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1097eb1ec7c1SStefano Zampini   /* diagonal part */
10989566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1099629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1100629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1101eb1ec7c1SStefano Zampini 
1102eb1ec7c1SStefano Zampini   /* subdiagonal part */
11035f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
11049566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1105eb1ec7c1SStefano Zampini 
1106eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11079566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11089566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11099566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11109566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1111eb1ec7c1SStefano Zampini 
11129566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11149566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1115eb1ec7c1SStefano Zampini 
1116eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11179566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1119eb1ec7c1SStefano Zampini }
112066976f2fSJacob Faibussowitsch #endif
1121eb1ec7c1SStefano Zampini 
112266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1123d71ae5a4SJacob Faibussowitsch {
1124de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1125d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1126629a200eSBarry Smith   PetscScalar       *from;
1127d9ca1df4SBarry Smith   const PetscScalar *x;
1128a9d4b620SHong Zhang 
1129a9d4b620SHong Zhang   PetscFunctionBegin;
1130a9d4b620SHong Zhang   /* diagonal part */
11319566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1132629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1133629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1134a9d4b620SHong Zhang 
1135a9d4b620SHong Zhang   /* subdiagonal part */
11369566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1137a9d4b620SHong Zhang 
1138a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11399566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11409566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11419566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1143a9d4b620SHong Zhang 
11449566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11469566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1147a9d4b620SHong Zhang 
1148a9d4b620SHong Zhang   /* supperdiagonal part */
11499566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1151a9d4b620SHong Zhang }
1152a9d4b620SHong Zhang 
1153a30f8f8cSSatish Balay /*
1154a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1155a30f8f8cSSatish Balay    diagonal block
1156a30f8f8cSSatish Balay */
115766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1158d71ae5a4SJacob Faibussowitsch {
1159a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1160a30f8f8cSSatish Balay 
1161a30f8f8cSSatish Balay   PetscFunctionBegin;
116208401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11639566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1165a30f8f8cSSatish Balay }
1166a30f8f8cSSatish Balay 
116766976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1168d71ae5a4SJacob Faibussowitsch {
1169a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1170a30f8f8cSSatish Balay 
1171a30f8f8cSSatish Balay   PetscFunctionBegin;
11729566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11739566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1175a30f8f8cSSatish Balay }
1176a30f8f8cSSatish Balay 
117766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1178d71ae5a4SJacob Faibussowitsch {
1179d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1180d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1181d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1182d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1183899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1184d0d4cfc2SHong Zhang 
1185a30f8f8cSSatish Balay   PetscFunctionBegin;
11865f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1187d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1188d0d4cfc2SHong Zhang 
1189d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1190d0d4cfc2SHong Zhang     /*
1191d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1192d0d4cfc2SHong Zhang     */
1193d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1194d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1195d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1196d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1197d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
119826fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1199d0d4cfc2SHong Zhang     }
12009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1201d0d4cfc2SHong Zhang   }
1202d0d4cfc2SHong Zhang 
12035f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1204d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1205d0d4cfc2SHong Zhang 
12069371c9d4SSatish Balay   pvA = &vworkA;
12079371c9d4SSatish Balay   pcA = &cworkA;
12089371c9d4SSatish Balay   pvB = &vworkB;
12099371c9d4SSatish Balay   pcB = &cworkB;
12109371c9d4SSatish Balay   if (!v) {
12119371c9d4SSatish Balay     pvA = NULL;
12129371c9d4SSatish Balay     pvB = NULL;
12139371c9d4SSatish Balay   }
12149371c9d4SSatish Balay   if (!idx) {
12159371c9d4SSatish Balay     pcA = NULL;
12169371c9d4SSatish Balay     if (!v) pcB = NULL;
12179371c9d4SSatish Balay   }
12189566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12199566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1220d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1221d0d4cfc2SHong Zhang 
1222d0d4cfc2SHong Zhang   cmap = mat->garray;
1223d0d4cfc2SHong Zhang   if (v || idx) {
1224d0d4cfc2SHong Zhang     if (nztot) {
1225d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1226d0d4cfc2SHong Zhang       PetscInt imark = -1;
1227d0d4cfc2SHong Zhang       if (v) {
1228d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1229d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1230d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1231d0d4cfc2SHong Zhang           else break;
1232d0d4cfc2SHong Zhang         }
1233d0d4cfc2SHong Zhang         imark = i;
1234d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1235d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1236d0d4cfc2SHong Zhang       }
1237d0d4cfc2SHong Zhang       if (idx) {
1238d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1239d0d4cfc2SHong Zhang         if (imark > -1) {
1240ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1241d0d4cfc2SHong Zhang         } else {
1242d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
124326fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1244d0d4cfc2SHong Zhang             else break;
1245d0d4cfc2SHong Zhang           }
1246d0d4cfc2SHong Zhang           imark = i;
1247d0d4cfc2SHong Zhang         }
1248d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1249d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1250d0d4cfc2SHong Zhang       }
1251d0d4cfc2SHong Zhang     } else {
1252f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1253f4259b30SLisandro Dalcin       if (v) *v = NULL;
1254d0d4cfc2SHong Zhang     }
1255d0d4cfc2SHong Zhang   }
1256d0d4cfc2SHong Zhang   *nz = nztot;
12579566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12589566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1260a30f8f8cSSatish Balay }
1261a30f8f8cSSatish Balay 
126266976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1263d71ae5a4SJacob Faibussowitsch {
1264a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1265a30f8f8cSSatish Balay 
1266a30f8f8cSSatish Balay   PetscFunctionBegin;
12675f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1268a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
12693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1270a30f8f8cSSatish Balay }
1271a30f8f8cSSatish Balay 
127266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1273d71ae5a4SJacob Faibussowitsch {
1274d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1275d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1276d0d4cfc2SHong Zhang 
1277d0d4cfc2SHong Zhang   PetscFunctionBegin;
1278d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
12793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1280d0d4cfc2SHong Zhang }
128166976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1282d71ae5a4SJacob Faibussowitsch {
1283d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1284d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1285d0d4cfc2SHong Zhang 
1286d0d4cfc2SHong Zhang   PetscFunctionBegin;
1287d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
12883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1289d0d4cfc2SHong Zhang }
1290d0d4cfc2SHong Zhang 
129166976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1292d71ae5a4SJacob Faibussowitsch {
12935f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
12945f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
12952726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
12962726fb6dSPierre Jolivet 
12979566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
12989566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
12995f80ce2aSJacob Faibussowitsch   }
13003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13012726fb6dSPierre Jolivet }
13022726fb6dSPierre Jolivet 
130366976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1304d71ae5a4SJacob Faibussowitsch {
130599cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
130699cafbc1SBarry Smith 
130799cafbc1SBarry Smith   PetscFunctionBegin;
13089566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13099566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
13103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
131199cafbc1SBarry Smith }
131299cafbc1SBarry Smith 
131366976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1314d71ae5a4SJacob Faibussowitsch {
131599cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
131699cafbc1SBarry Smith 
131799cafbc1SBarry Smith   PetscFunctionBegin;
13189566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13199566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
13203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
132199cafbc1SBarry Smith }
132299cafbc1SBarry Smith 
13237dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
132436032a97SHong Zhang    Input: isrow       - distributed(parallel),
132536032a97SHong Zhang           iscol_local - locally owned (seq)
132636032a97SHong Zhang */
132766976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1328d71ae5a4SJacob Faibussowitsch {
13298f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13308f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
133136032a97SHong Zhang 
133236032a97SHong Zhang   PetscFunctionBegin;
133366976f2fSJacob Faibussowitsch   *flg = PETSC_FALSE;
13349566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13359566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
133666976f2fSJacob Faibussowitsch   if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS);
13378f46ffcaSHong Zhang 
13389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13408f46ffcaSHong Zhang 
13419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13449566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13459566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13469566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13478f46ffcaSHong Zhang 
13488f46ffcaSHong Zhang   nmatch = 0;
13498f46ffcaSHong Zhang   k      = 0;
13508f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13518f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13528f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13539371c9d4SSatish Balay         k = j;
13549371c9d4SSatish Balay         nmatch++;
13558f46ffcaSHong Zhang         break;
13568f46ffcaSHong Zhang       }
13578f46ffcaSHong Zhang     }
13588f46ffcaSHong Zhang   }
13599566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13609566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13619566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13629566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13631098a8e8SHong Zhang   if (nmatch < sz1) {
13641098a8e8SHong Zhang     *flg = PETSC_FALSE;
13651098a8e8SHong Zhang   } else {
13661098a8e8SHong Zhang     *flg = PETSC_TRUE;
13671098a8e8SHong Zhang   }
13683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13698f46ffcaSHong Zhang }
137036032a97SHong Zhang 
137166976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1372d71ae5a4SJacob Faibussowitsch {
1373fdfbdca6SPierre Jolivet   Mat       C[2];
1374fdfbdca6SPierre Jolivet   IS        iscol_local, isrow_local;
1375fdfbdca6SPierre Jolivet   PetscInt  csize, csize_local, rsize;
1376fdfbdca6SPierre Jolivet   PetscBool isequal, issorted, isidentity = PETSC_FALSE;
137736032a97SHong Zhang 
137836032a97SHong Zhang   PetscFunctionBegin;
13799566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1380fdfbdca6SPierre Jolivet   PetscCall(ISGetLocalSize(isrow, &rsize));
138136032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13829566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13835f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
138436032a97SHong Zhang   } else {
13859566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
13869566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
1387fdfbdca6SPierre Jolivet     PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted");
13888f46ffcaSHong Zhang   }
1389fdfbdca6SPierre Jolivet   PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
1390fdfbdca6SPierre Jolivet   if (!isequal) {
1391fdfbdca6SPierre Jolivet     PetscCall(ISGetLocalSize(iscol_local, &csize_local));
1392fdfbdca6SPierre Jolivet     isidentity = (PetscBool)(mat->cmap->N == csize_local);
1393fdfbdca6SPierre Jolivet     if (!isidentity) {
1394fdfbdca6SPierre Jolivet       if (call == MAT_REUSE_MATRIX) {
1395fdfbdca6SPierre Jolivet         PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local));
1396fdfbdca6SPierre Jolivet         PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1397fdfbdca6SPierre Jolivet       } else {
1398fdfbdca6SPierre Jolivet         PetscCall(ISAllGather(isrow, &isrow_local));
1399fdfbdca6SPierre Jolivet         PetscCall(ISSorted(isrow_local, &issorted));
1400fdfbdca6SPierre Jolivet         PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted");
1401fdfbdca6SPierre Jolivet       }
1402fdfbdca6SPierre Jolivet     }
1403fdfbdca6SPierre Jolivet   }
14047dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
1405fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity)));
1406fdfbdca6SPierre Jolivet   if (!isequal && !isidentity) {
14078f46ffcaSHong Zhang     if (call == MAT_INITIAL_MATRIX) {
1408fdfbdca6SPierre Jolivet       IS       intersect;
1409fdfbdca6SPierre Jolivet       PetscInt ni;
1410fdfbdca6SPierre Jolivet 
1411fdfbdca6SPierre Jolivet       PetscCall(ISIntersect(isrow_local, iscol_local, &intersect));
1412fdfbdca6SPierre Jolivet       PetscCall(ISGetLocalSize(intersect, &ni));
1413fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&intersect));
1414fdfbdca6SPierre Jolivet       PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni);
1415fdfbdca6SPierre Jolivet     }
1416fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE));
1417fdfbdca6SPierre Jolivet     PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1));
1418fdfbdca6SPierre Jolivet     PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN));
1419fdfbdca6SPierre Jolivet     if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1420fdfbdca6SPierre Jolivet     else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat));
1421fdfbdca6SPierre Jolivet     else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1422fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C));
1423fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C + 1));
1424fdfbdca6SPierre Jolivet   }
1425fdfbdca6SPierre Jolivet   if (call == MAT_INITIAL_MATRIX) {
1426fdfbdca6SPierre Jolivet     if (!isequal && !isidentity) {
1427fdfbdca6SPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local));
1428fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&isrow_local));
1429fdfbdca6SPierre Jolivet     }
14309566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14319566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14328f46ffcaSHong Zhang   }
14333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14348f46ffcaSHong Zhang }
14358f46ffcaSHong Zhang 
143666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1437d71ae5a4SJacob Faibussowitsch {
1438a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1439a30f8f8cSSatish Balay 
1440a30f8f8cSSatish Balay   PetscFunctionBegin;
14419566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14429566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1444a30f8f8cSSatish Balay }
1445a30f8f8cSSatish Balay 
144666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1447d71ae5a4SJacob Faibussowitsch {
1448a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1449a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
14503966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1451a30f8f8cSSatish Balay 
1452a30f8f8cSSatish Balay   PetscFunctionBegin;
1453d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
145426fbe8dcSKarl Rupp 
14559566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
145626fbe8dcSKarl Rupp 
14579371c9d4SSatish Balay   isend[0] = info->nz_used;
14589371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14599371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14609371c9d4SSatish Balay   isend[3] = info->memory;
14619371c9d4SSatish Balay   isend[4] = info->mallocs;
146226fbe8dcSKarl Rupp 
14639566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
146426fbe8dcSKarl Rupp 
14659371c9d4SSatish Balay   isend[0] += info->nz_used;
14669371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14679371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14689371c9d4SSatish Balay   isend[3] += info->memory;
14699371c9d4SSatish Balay   isend[4] += info->mallocs;
1470a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1471a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1472a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1473a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1474a30f8f8cSSatish Balay     info->memory       = isend[3];
1475a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1476a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1477462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
147826fbe8dcSKarl Rupp 
1479a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1480a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1481a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1482a30f8f8cSSatish Balay     info->memory       = irecv[3];
1483a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1484a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1485462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
148626fbe8dcSKarl Rupp 
1487a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1488a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1489a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1490a30f8f8cSSatish Balay     info->memory       = irecv[3];
1491a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
149298921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1493a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1494a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1495a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
14963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1497a30f8f8cSSatish Balay }
1498a30f8f8cSSatish Balay 
149966976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1500d71ae5a4SJacob Faibussowitsch {
1501a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1502d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1503a30f8f8cSSatish Balay 
1504a30f8f8cSSatish Balay   PetscFunctionBegin;
1505e98b92d7SKris Buschelman   switch (op) {
1506512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1507e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
150828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1509a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1510e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
151143674050SBarry Smith     MatCheckPreallocated(A, 1);
15129566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15139566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1514e98b92d7SKris Buschelman     break;
1515e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
151643674050SBarry Smith     MatCheckPreallocated(A, 1);
15174e0d8c25SBarry Smith     a->roworiented = flg;
151826fbe8dcSKarl Rupp 
15199566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15209566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1521e98b92d7SKris Buschelman     break;
1522d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1523d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1524d71ae5a4SJacob Faibussowitsch     break;
1525d71ae5a4SJacob Faibussowitsch   case MAT_USE_HASH_TABLE:
1526d71ae5a4SJacob Faibussowitsch     a->ht_flag = flg;
1527d71ae5a4SJacob Faibussowitsch     break;
1528d71ae5a4SJacob Faibussowitsch   case MAT_HERMITIAN:
15299725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
15300f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1531eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1532547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1533eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1534eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1535eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1536b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1537eb1ec7c1SStefano Zampini     }
15380f2140c7SStefano Zampini #endif
1539eeffb40dSHong Zhang     break;
1540ffa07934SHong Zhang   case MAT_SPD:
1541d71ae5a4SJacob Faibussowitsch   case MAT_SYMMETRIC:
15429725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1543eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1544eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1545eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1546eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1547eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1548eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1549eb1ec7c1SStefano Zampini     }
1550eb1ec7c1SStefano Zampini #endif
1551eeffb40dSHong Zhang     break;
155277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15539725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1554eeffb40dSHong Zhang     break;
1555d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_LOWER_TRIANGULAR:
1556d71ae5a4SJacob Faibussowitsch   case MAT_ERROR_LOWER_TRIANGULAR:
1557d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1558d71ae5a4SJacob Faibussowitsch     break;
1559d71ae5a4SJacob Faibussowitsch   case MAT_GETROW_UPPERTRIANGULAR:
1560d71ae5a4SJacob Faibussowitsch     aA->getrow_utriangular = flg;
1561d71ae5a4SJacob Faibussowitsch     break;
1562d71ae5a4SJacob Faibussowitsch   default:
1563888c827cSStefano Zampini     break;
1564a30f8f8cSSatish Balay   }
15653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1566a30f8f8cSSatish Balay }
1567a30f8f8cSSatish Balay 
156866976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1569d71ae5a4SJacob Faibussowitsch {
1570a30f8f8cSSatish Balay   PetscFunctionBegin;
15717fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1572cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15739566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1574cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
15759566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1576fc4dec0aSBarry Smith   }
15773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1578a30f8f8cSSatish Balay }
1579a30f8f8cSSatish Balay 
158066976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1581d71ae5a4SJacob Faibussowitsch {
1582a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1583a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
15845e90f9d9SHong Zhang   PetscInt      nv, m, n;
1585ace3abfcSBarry Smith   PetscBool     flg;
1586a30f8f8cSSatish Balay 
1587a30f8f8cSSatish Balay   PetscFunctionBegin;
1588a30f8f8cSSatish Balay   if (ll != rr) {
15899566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
15905f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1591a30f8f8cSSatish Balay   }
15923ba16761SJacob Faibussowitsch   if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1593b3bf805bSHong Zhang 
15949566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
15955f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1596b3bf805bSHong Zhang 
15979566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
15985f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
15995e90f9d9SHong Zhang 
16009566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
16015e90f9d9SHong Zhang 
16025e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1603dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16045e90f9d9SHong Zhang 
16055e90f9d9SHong Zhang   /* scale the diagonal part */
1606dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1607a30f8f8cSSatish Balay 
16085e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
16099566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1610dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
16113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1612a30f8f8cSSatish Balay }
1613a30f8f8cSSatish Balay 
161466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1615d71ae5a4SJacob Faibussowitsch {
1616f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1617a30f8f8cSSatish Balay 
1618a30f8f8cSSatish Balay   PetscFunctionBegin;
16199566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
16203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1621a30f8f8cSSatish Balay }
1622a30f8f8cSSatish Balay 
16236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1624a30f8f8cSSatish Balay 
162566976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1626d71ae5a4SJacob Faibussowitsch {
1627a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1628a30f8f8cSSatish Balay   Mat           a, b, c, d;
1629ace3abfcSBarry Smith   PetscBool     flg;
1630a30f8f8cSSatish Balay 
1631a30f8f8cSSatish Balay   PetscFunctionBegin;
16329371c9d4SSatish Balay   a = matA->A;
16339371c9d4SSatish Balay   b = matA->B;
16349371c9d4SSatish Balay   c = matB->A;
16359371c9d4SSatish Balay   d = matB->B;
1636a30f8f8cSSatish Balay 
16379566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
163848a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
16395440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1641a30f8f8cSSatish Balay }
1642a30f8f8cSSatish Balay 
164366976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1644d71ae5a4SJacob Faibussowitsch {
16454c7a3774SStefano Zampini   PetscBool isbaij;
16463c896bc6SHong Zhang 
16473c896bc6SHong Zhang   PetscFunctionBegin;
16489566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16495f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16503c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16513c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16529566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16539566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
16549566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16553c896bc6SHong Zhang   } else {
16564c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16574c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16584c7a3774SStefano Zampini 
16599566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
16609566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
16613c896bc6SHong Zhang   }
16629566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16643c896bc6SHong Zhang }
16653c896bc6SHong Zhang 
166666976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1667d71ae5a4SJacob Faibussowitsch {
16684fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16694fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
16704fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
16714fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
16724fe895cdSHong Zhang 
16734fe895cdSHong Zhang   PetscFunctionBegin;
16744fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16754fe895cdSHong Zhang     PetscScalar alpha = a;
16764fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
16774fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
16789566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1679792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
16804fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
16814fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
16829566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1683792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
16849566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1685ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16869566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
16879566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
16894fe895cdSHong Zhang   } else {
16904de5dceeSHong Zhang     Mat       B;
16914de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
16925f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
16939566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16949566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16959566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
16969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
16979566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
16989566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
16999566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
17009566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
17019566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
17029566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
17039566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
17049566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
17059566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
17069566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
17079566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
17089566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
17099566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
17109566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
17114fe895cdSHong Zhang   }
17123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17134fe895cdSHong Zhang }
17144fe895cdSHong Zhang 
171566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1716d71ae5a4SJacob Faibussowitsch {
17171302d50aSBarry Smith   PetscInt  i;
1718afebec48SHong Zhang   PetscBool flg;
1719a5e6ed63SBarry Smith 
17206849ba73SBarry Smith   PetscFunctionBegin;
17219566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1722a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
17239566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
172448a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17254dcd73b1SHong Zhang   }
17263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1727a5e6ed63SBarry Smith }
1728a5e6ed63SBarry Smith 
172966976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1730d71ae5a4SJacob Faibussowitsch {
17317d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17326f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
17337d68702bSBarry Smith 
17347d68702bSBarry Smith   PetscFunctionBegin;
17356f33a894SBarry Smith   if (!Y->preallocated) {
17369566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17376f33a894SBarry Smith   } else if (!aij->nz) {
1738b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17399566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1740b83222d8SBarry Smith     aij->nonew = nonew;
17417d68702bSBarry Smith   }
17429566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17447d68702bSBarry Smith }
17457d68702bSBarry Smith 
174666976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d)
1747d71ae5a4SJacob Faibussowitsch {
17483b49f96aSBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
17493b49f96aSBarry Smith 
17503b49f96aSBarry Smith   PetscFunctionBegin;
17515f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
17529566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
17533b49f96aSBarry Smith   if (d) {
17543b49f96aSBarry Smith     PetscInt rstart;
17559566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
17563b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
17573b49f96aSBarry Smith   }
17583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17593b49f96aSBarry Smith }
17603b49f96aSBarry Smith 
176166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1762d71ae5a4SJacob Faibussowitsch {
1763a5b7ff6bSBarry Smith   PetscFunctionBegin;
1764a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
17653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1766a5b7ff6bSBarry Smith }
17673b49f96aSBarry Smith 
176817ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
176917ea310bSPierre Jolivet {
177017ea310bSPierre Jolivet   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
177117ea310bSPierre Jolivet 
177217ea310bSPierre Jolivet   PetscFunctionBegin;
177317ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep));       // possibly keep zero diagonal coefficients
177417ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
177517ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
177617ea310bSPierre Jolivet }
177717ea310bSPierre Jolivet 
17786cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer);
1779789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]);
1780789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
17816cff0a6bSPierre Jolivet 
17823964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1783a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1784a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1785a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
178697304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1787431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1788431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1789f4259b30SLisandro Dalcin                                        NULL,
1790f4259b30SLisandro Dalcin                                        NULL,
1791f4259b30SLisandro Dalcin                                        NULL,
1792f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1793f4259b30SLisandro Dalcin                                        NULL,
1794f4259b30SLisandro Dalcin                                        NULL,
179541f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1796a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
179797304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1798a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1799a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1800a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1801a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
180297304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1803a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1804a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1805a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1806f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1807f4259b30SLisandro Dalcin                                        NULL,
1808f4259b30SLisandro Dalcin                                        NULL,
1809f4259b30SLisandro Dalcin                                        NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
181126cec326SBarry Smith                                        /* 29*/ MatSetUp_MPI_Hash,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
1814a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1815f4259b30SLisandro Dalcin                                        NULL,
1816d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        NULL,
1819f4259b30SLisandro Dalcin                                        NULL,
1820f4259b30SLisandro Dalcin                                        NULL,
1821d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
18227dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1823d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1824a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18253c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1826f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1827a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18287d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        NULL,
1831f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                        NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1839f4259b30SLisandro Dalcin                                        NULL,
1840a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18417dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1842f4259b30SLisandro Dalcin                                        NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
1844f4259b30SLisandro Dalcin                                        NULL,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1847f4259b30SLisandro Dalcin                                        NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
1849f4259b30SLisandro Dalcin                                        NULL,
18508bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPISBAIJ,
18518bb0f5c6SPierre Jolivet                                        /* 69*/ NULL,
185228d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                        NULL,
1859f4259b30SLisandro Dalcin                                        NULL,
18605bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
18618bb0f5c6SPierre Jolivet                                        /* 79*/ NULL,
18628bb0f5c6SPierre Jolivet                                        NULL,
18638bb0f5c6SPierre Jolivet                                        NULL,
18648bb0f5c6SPierre Jolivet                                        NULL,
18658bb0f5c6SPierre Jolivet                                        NULL,
1866f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
1868f4259b30SLisandro Dalcin                                        NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        NULL,
18758bb0f5c6SPierre Jolivet                                        MatConjugate_MPISBAIJ,
1876f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
187899cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1879d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1880d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
18818bb0f5c6SPierre Jolivet                                        /* 99*/ MatRestoreRowUpperTriangular_MPISBAIJ,
18828bb0f5c6SPierre Jolivet                                        NULL,
18838bb0f5c6SPierre Jolivet                                        NULL,
18848bb0f5c6SPierre Jolivet                                        NULL,
18858bb0f5c6SPierre Jolivet                                        NULL,
18868bb0f5c6SPierre Jolivet                                        /*104*/ MatMissingDiagonal_MPISBAIJ,
18878bb0f5c6SPierre Jolivet                                        NULL,
18888bb0f5c6SPierre Jolivet                                        NULL,
18898bb0f5c6SPierre Jolivet                                        NULL,
18908bb0f5c6SPierre Jolivet                                        NULL,
1891f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
18958bb0f5c6SPierre Jolivet                                        NULL,
1896f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904f4259b30SLisandro Dalcin                                        NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
1906f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        NULL,
19098bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_Default,
1910f4259b30SLisandro Dalcin                                        NULL,
1911f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1912f4259b30SLisandro Dalcin                                        NULL,
19138bb0f5c6SPierre Jolivet                                        MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1914f4259b30SLisandro Dalcin                                        NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1917f4259b30SLisandro Dalcin                                        NULL,
1918f4259b30SLisandro Dalcin                                        NULL,
1919eede4a3fSMark Adams                                        MatEliminateZeros_MPISBAIJ,
19204cc2b5b5SPierre Jolivet                                        NULL,
19218bb0f5c6SPierre Jolivet                                        /*139*/ NULL,
192242ce410bSJunchao Zhang                                        NULL,
192342ce410bSJunchao Zhang                                        NULL,
192403db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
1925c2be7ffeSStefano Zampini                                        NULL,
192603db1824SAlex Lindsay                                        NULL};
1927a30f8f8cSSatish Balay 
192866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1929d71ae5a4SJacob Faibussowitsch {
1930476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1931535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
19325d2a9ed1SStefano Zampini   PetscMPIInt   size;
1933a23d5eceSKris Buschelman 
1934a23d5eceSKris Buschelman   PetscFunctionBegin;
1935ad79cf63SBarry Smith   if (B->hash_active) {
1936aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
1937ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
1938ad79cf63SBarry Smith   }
1939ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
194058b7e2c1SStefano Zampini   PetscCall(MatSetBlockSize(B, bs));
19419566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19445f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19455f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1946899cda47SBarry Smith 
1947d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1948d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
19495f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1950a23d5eceSKris Buschelman 
1951d0f46423SBarry Smith   B->rmap->bs = bs;
1952a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1953a23d5eceSKris Buschelman   b->mbs      = mbs;
1954a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1955de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1956de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1957a23d5eceSKris Buschelman 
1958ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1959d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1960d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1961a23d5eceSKris Buschelman 
1962d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1963d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1964a23d5eceSKris Buschelman 
1965cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1966eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
1967cb7b82ddSBarry Smith #else
19689566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1969cb7b82ddSBarry Smith #endif
19709566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
19719566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
19729566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
19739566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
19749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
19759566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
19769566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
19779566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
19789566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1979cb7b82ddSBarry Smith 
19809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
1981c508b908SBarry Smith 
1982c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
19839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19849566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
19859566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
19869566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
1987c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
1988cb7b82ddSBarry Smith 
1989c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
1990ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
19919566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
19929566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
19939566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQSBAIJ));
1994c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
1995a23d5eceSKris Buschelman 
19969566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
19979566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
199826fbe8dcSKarl Rupp 
1999526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2000cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2001cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
20023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2003a23d5eceSKris Buschelman }
2004a23d5eceSKris Buschelman 
200566976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2006d71ae5a4SJacob Faibussowitsch {
200702106b30SBarry Smith   PetscInt        m, rstart, cend;
2008f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2009f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2010f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2011bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
20123bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2013dfb205c3SBarry Smith 
2014dfb205c3SBarry Smith   PetscFunctionBegin;
20155f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
20169566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
20179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
20189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
20199566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
20209566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2021dfb205c3SBarry Smith   m      = B->rmap->n / bs;
2022dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
2023dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
2024dfb205c3SBarry Smith 
20255f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
20269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2027dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2028dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
20295f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20304cf0e950SBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */
2031dfb205c3SBarry Smith     JJ = jj + ii[i];
20320cd7f59aSBarry Smith     bd = 0;
2033dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
20340cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2035dfb205c3SBarry Smith       JJ++;
20360cd7f59aSBarry Smith       bd++;
2037dfb205c3SBarry Smith     }
2038dfb205c3SBarry Smith     d = 0;
2039dfb205c3SBarry Smith     for (; j < nz; j++) {
2040dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2041dfb205c3SBarry Smith       d++;
2042dfb205c3SBarry Smith     }
2043dfb205c3SBarry Smith     d_nnz[i] = d;
20440cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20450cd7f59aSBarry Smith     nz       = nz - bd;
20460cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
2047dfb205c3SBarry Smith   }
20489566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20499566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20509566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2051dfb205c3SBarry Smith 
2052dfb205c3SBarry Smith   values = (PetscScalar *)V;
205348a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2054dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2055dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
2056dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2057dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
2058bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2059dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
20609566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2061bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
2062bb80cfbbSStefano Zampini       PetscInt j;
20630cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
20640cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
20659566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
20660cd7f59aSBarry Smith       }
20670cd7f59aSBarry Smith     }
2068dfb205c3SBarry Smith   }
2069dfb205c3SBarry Smith 
20709566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
20713bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20723bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
20739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
20749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
20753bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20763bd0feecSPierre Jolivet 
20779566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
20783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2079dfb205c3SBarry Smith }
2080dfb205c3SBarry Smith 
20810bad9183SKris Buschelman /*MC
2082fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2083828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2084828413b8SBarry Smith    the matrix is stored.
2085828413b8SBarry Smith 
2086828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
208711a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
20880bad9183SKris Buschelman 
20892ef1f0ffSBarry Smith    Options Database Key:
209011a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
20910bad9183SKris Buschelman 
20922ef1f0ffSBarry Smith    Level: beginner
20932ef1f0ffSBarry Smith 
209411a5261eSBarry Smith    Note:
2095476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2096476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2097476417e5SBarry Smith 
20981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
20990bad9183SKris Buschelman M*/
21000bad9183SKris Buschelman 
2101d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2102d71ae5a4SJacob Faibussowitsch {
2103b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
210494ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2105b5df2d14SHong Zhang 
2106b5df2d14SHong Zhang   PetscFunctionBegin;
21074dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2108b0a32e0cSBarry Smith   B->data   = (void *)b;
2109aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2110b5df2d14SHong Zhang 
2111b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2112b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2113b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2114b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
211526fbe8dcSKarl Rupp 
21169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
21179566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2118b5df2d14SHong Zhang 
2119b5df2d14SHong Zhang   /* build local table of row and column ownerships */
21209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2121b5df2d14SHong Zhang 
2122b5df2d14SHong Zhang   /* build cache for off array entries formed */
21239566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
212426fbe8dcSKarl Rupp 
2125b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21260298fd71SBarry Smith   b->colmap      = NULL;
21270298fd71SBarry Smith   b->garray      = NULL;
2128b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2129b5df2d14SHong Zhang 
2130b5df2d14SHong Zhang   /* stuff used in block assembly */
2131f4259b30SLisandro Dalcin   b->barray = NULL;
2132b5df2d14SHong Zhang 
2133b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2134f4259b30SLisandro Dalcin   b->lvec    = NULL;
2135f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2136f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2137f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2138f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2139f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2140f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2141f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2142b5df2d14SHong Zhang 
2143b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2144f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2145f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2146b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2147b5df2d14SHong Zhang 
2148b5df2d14SHong Zhang   /* hash table stuff */
2149f4259b30SLisandro Dalcin   b->ht           = NULL;
2150f4259b30SLisandro Dalcin   b->hd           = NULL;
2151b5df2d14SHong Zhang   b->ht_size      = 0;
2152b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2153b5df2d14SHong Zhang   b->ht_fact      = 0;
2154b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2155b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2156b5df2d14SHong Zhang 
21577dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21587a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21597a868f3eSHong Zhang 
2160f4259b30SLisandro Dalcin   b->in_loc = NULL;
2161f4259b30SLisandro Dalcin   b->v_loc  = NULL;
216259ffdab8SBarry Smith   b->n_loc  = 0;
216394ae4db5SBarry Smith 
21649566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
21659566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
21669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
21679566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21686214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21699566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
21706214f412SHong Zhang #endif
2171*d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
21729566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2173d24d4204SJose E. Roman #endif
21749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
21759566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2176aa5a9175SDahai Guo 
2177b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2178b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2179b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2180b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2181eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2182b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2183eb1ec7c1SStefano Zampini #else
2184b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2185eb1ec7c1SStefano Zampini #endif
218613647f61SHong Zhang 
21879566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2188d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
21899566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
219094ae4db5SBarry Smith   if (flg) {
219194ae4db5SBarry Smith     PetscReal fact = 1.39;
21929566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
21939566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
219494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
21959566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
21969566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
219794ae4db5SBarry Smith   }
2198d0609cedSBarry Smith   PetscOptionsEnd();
21993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2200b5df2d14SHong Zhang }
2201b5df2d14SHong Zhang 
22022920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2203209238afSKris Buschelman /*MC
2204002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2205209238afSKris Buschelman 
220611a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
220711a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2208209238afSKris Buschelman 
220911a5261eSBarry Smith    Options Database Key:
2210c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2211209238afSKris Buschelman 
2212209238afSKris Buschelman   Level: beginner
2213209238afSKris Buschelman 
22141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2215209238afSKris Buschelman M*/
2216209238afSKris Buschelman 
22175d83a8b1SBarry Smith /*@
2218b5df2d14SHong Zhang   MatMPISBAIJSetPreallocation - For good matrix assembly performance
2219b5df2d14SHong Zhang   the user should preallocate the matrix storage by setting the parameters
2220b5df2d14SHong Zhang   d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2221b5df2d14SHong Zhang   performance can be increased by more than a factor of 50.
2222b5df2d14SHong Zhang 
2223c3339decSBarry Smith   Collective
2224b5df2d14SHong Zhang 
2225b5df2d14SHong Zhang   Input Parameters:
22261c4f3114SJed Brown + B     - the matrix
2227bb7ae925SBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2228bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2229b5df2d14SHong Zhang . d_nz  - number of block nonzeros per block row in diagonal portion of local
2230b5df2d14SHong Zhang           submatrix  (same for all local rows)
2231b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22326d10fdaeSSatish Balay           in the upper triangular and diagonal part of the in diagonal portion of the local
22332ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.  If you plan to factor the matrix you must leave room
223495742e49SBarry Smith           for the diagonal entry and set a value even if it is zero.
2235b5df2d14SHong Zhang . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2236b5df2d14SHong Zhang           submatrix (same for all local rows).
2237b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2238c2fc9fa9SBarry Smith           off-diagonal portion of the local submatrix that is right of the diagonal
22392ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.
2240b5df2d14SHong Zhang 
2241b5df2d14SHong Zhang   Options Database Keys:
2242a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2243b5df2d14SHong Zhang                     block calculations (much slower)
2244a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2245b5df2d14SHong Zhang 
22462ef1f0ffSBarry Smith   Level: intermediate
22472ef1f0ffSBarry Smith 
2248b5df2d14SHong Zhang   Notes:
2249b5df2d14SHong Zhang 
225011a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2251b5df2d14SHong Zhang   than it must be used on all processors that share the object for that argument.
2252b5df2d14SHong Zhang 
225349a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
225449a6f317SBarry Smith 
2255b5df2d14SHong Zhang   Storage Information:
2256b5df2d14SHong Zhang   For a square global matrix we define each processor's diagonal portion
2257b5df2d14SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
2258b5df2d14SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
2259b5df2d14SHong Zhang   local matrix (a rectangular submatrix).
2260b5df2d14SHong Zhang 
2261b5df2d14SHong Zhang   The user can specify preallocated storage for the diagonal part of
22622ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
22632ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2264b5df2d14SHong Zhang   memory allocation.  Likewise, specify preallocated storage for the
22652ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2266b5df2d14SHong Zhang 
226711a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
2268aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
22692ef1f0ffSBarry Smith   You can also run with the option `-info` and look for messages with the string
2270aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
2271aa95bbe8SBarry Smith 
2272b5df2d14SHong Zhang   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2273b5df2d14SHong Zhang   the figure below we depict these three local rows and all columns (0-11).
2274b5df2d14SHong Zhang 
2275b5df2d14SHong Zhang .vb
2276b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2277a4b1a0f6SJed Brown           --------------------------
2278c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2279c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2280c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2281a4b1a0f6SJed Brown           --------------------------
2282b5df2d14SHong Zhang .ve
2283b5df2d14SHong Zhang 
2284b5df2d14SHong Zhang   Thus, any entries in the d locations are stored in the d (diagonal)
2285b5df2d14SHong Zhang   submatrix, and any entries in the o locations are stored in the
22866d10fdaeSSatish Balay   o (off-diagonal) submatrix.  Note that the d matrix is stored in
228711a5261eSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2288b5df2d14SHong Zhang 
22892ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
22906d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
22912ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2292c2fc9fa9SBarry Smith 
2293b5df2d14SHong Zhang   In general, for PDE problems in which most nonzeros are near the diagonal,
22942ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2295b5df2d14SHong Zhang 
22961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2297b5df2d14SHong Zhang @*/
2298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2299d71ae5a4SJacob Faibussowitsch {
2300b5df2d14SHong Zhang   PetscFunctionBegin;
23016ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
23026ba663aaSJed Brown   PetscValidType(B, 1);
23036ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2304cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
23053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2306b5df2d14SHong Zhang }
2307b5df2d14SHong Zhang 
23082920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
23095d83a8b1SBarry Smith /*@
231011a5261eSBarry Smith   MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2311a30f8f8cSSatish Balay   (block compressed row).  For good matrix assembly performance
2312a30f8f8cSSatish Balay   the user should preallocate the matrix storage by setting the parameters
231320f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2314a30f8f8cSSatish Balay 
2315d083f849SBarry Smith   Collective
2316a30f8f8cSSatish Balay 
2317a30f8f8cSSatish Balay   Input Parameters:
2318a30f8f8cSSatish Balay + comm  - MPI communicator
231911a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
232020f4b53cSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
232120f4b53cSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2322a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2323a30f8f8cSSatish Balay           y vector for the matrix-vector product y = Ax.
232420f4b53cSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2325a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2326a30f8f8cSSatish Balay           x vector for the matrix-vector product y = Ax.
232720f4b53cSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
232820f4b53cSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2329a30f8f8cSSatish Balay . d_nz  - number of block nonzeros per block row in diagonal portion of local
2330a30f8f8cSSatish Balay           submatrix (same for all local rows)
2331a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23326d10fdaeSSatish Balay           in the upper triangular portion of the in diagonal portion of the local
23332ef1f0ffSBarry Smith           (possibly different for each block block row) or `NULL`.
233495742e49SBarry Smith           If you plan to factor the matrix you must leave room for the diagonal entry and
233595742e49SBarry Smith           set its value even if it is zero.
2336a30f8f8cSSatish Balay . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2337a30f8f8cSSatish Balay           submatrix (same for all local rows).
2338a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2339a30f8f8cSSatish Balay           off-diagonal portion of the local submatrix (possibly different for
23402ef1f0ffSBarry Smith           each block row) or `NULL`.
2341a30f8f8cSSatish Balay 
2342a30f8f8cSSatish Balay   Output Parameter:
2343a30f8f8cSSatish Balay . A - the matrix
2344a30f8f8cSSatish Balay 
2345a30f8f8cSSatish Balay   Options Database Keys:
2346a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2347a30f8f8cSSatish Balay                     block calculations (much slower)
2348a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2349a2b725a8SWilliam Gropp - -mat_mpi        - use the parallel matrix data structures even on one processor
2350a30f8f8cSSatish Balay                     (defaults to using SeqBAIJ format on one processor)
2351a30f8f8cSSatish Balay 
23522ef1f0ffSBarry Smith   Level: intermediate
23532ef1f0ffSBarry Smith 
23542ef1f0ffSBarry Smith   Notes:
235577433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2356f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
235711a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2358175b88e8SBarry Smith 
2359d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
23606d6d819aSHong Zhang   This matrix type does not support complex Hermitian operation.
2361d1be2dadSMatthew Knepley 
2362a30f8f8cSSatish Balay   The user MUST specify either the local or global matrix dimensions
2363a30f8f8cSSatish Balay   (possibly both).
2364a30f8f8cSSatish Balay 
236511a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2366a30f8f8cSSatish Balay   than it must be used on all processors that share the object for that argument.
2367a30f8f8cSSatish Balay 
2368727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by
2369727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
2370727bdf9bSBarry Smith 
237149a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
237249a6f317SBarry Smith 
2373a30f8f8cSSatish Balay   Storage Information:
2374a30f8f8cSSatish Balay   For a square global matrix we define each processor's diagonal portion
2375a30f8f8cSSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
2376a30f8f8cSSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
2377a30f8f8cSSatish Balay   local matrix (a rectangular submatrix).
2378a30f8f8cSSatish Balay 
2379a30f8f8cSSatish Balay   The user can specify preallocated storage for the diagonal part of
23802ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both). Set
23812ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2382a30f8f8cSSatish Balay   memory allocation. Likewise, specify preallocated storage for the
23832ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2384a30f8f8cSSatish Balay 
2385a30f8f8cSSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2386a30f8f8cSSatish Balay   the figure below we depict these three local rows and all columns (0-11).
2387a30f8f8cSSatish Balay 
2388a30f8f8cSSatish Balay .vb
2389a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2390a4b1a0f6SJed Brown           --------------------------
2391c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2392c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2393c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2394a4b1a0f6SJed Brown           --------------------------
2395a30f8f8cSSatish Balay .ve
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
2398a30f8f8cSSatish Balay   submatrix, and any entries in the o locations are stored in the
23996d10fdaeSSatish Balay   o (off-diagonal) submatrix. Note that the d matrix is stored in
24002ef1f0ffSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2401a30f8f8cSSatish Balay 
24022ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
24036d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
24042ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2405a30f8f8cSSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
24062ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2407a30f8f8cSSatish Balay 
2408727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`,
2409727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
2410a30f8f8cSSatish Balay @*/
2411d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2412d71ae5a4SJacob Faibussowitsch {
24131302d50aSBarry Smith   PetscMPIInt size;
2414a30f8f8cSSatish Balay 
2415a30f8f8cSSatish Balay   PetscFunctionBegin;
24169566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
24179566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
24189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2419273d9f13SBarry Smith   if (size > 1) {
24209566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
24219566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2422273d9f13SBarry Smith   } else {
24239566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
24249566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2425273d9f13SBarry Smith   }
24263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2427a30f8f8cSSatish Balay }
2428a30f8f8cSSatish Balay 
2429d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2430d71ae5a4SJacob Faibussowitsch {
2431a30f8f8cSSatish Balay   Mat           mat;
2432a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2433d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2434387bc808SHong Zhang   PetscScalar  *array;
2435a30f8f8cSSatish Balay 
2436a30f8f8cSSatish Balay   PetscFunctionBegin;
2437f4259b30SLisandro Dalcin   *newmat = NULL;
243826fbe8dcSKarl Rupp 
24399566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24409566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24419566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2444e1b6402fSHong Zhang 
2445420957c1SBarry Smith   if (matin->hash_active) {
2446420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2447420957c1SBarry Smith   } else {
2448d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
2449273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
245082327fa8SHong Zhang     mat->assembled    = PETSC_TRUE;
24517fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
24527fff6886SHong Zhang 
2453b5df2d14SHong Zhang     a      = (Mat_MPISBAIJ *)mat->data;
2454a30f8f8cSSatish Balay     a->bs2 = oldmat->bs2;
2455a30f8f8cSSatish Balay     a->mbs = oldmat->mbs;
2456a30f8f8cSSatish Balay     a->nbs = oldmat->nbs;
2457a30f8f8cSSatish Balay     a->Mbs = oldmat->Mbs;
2458a30f8f8cSSatish Balay     a->Nbs = oldmat->Nbs;
2459a30f8f8cSSatish Balay 
2460a30f8f8cSSatish Balay     a->size         = oldmat->size;
2461a30f8f8cSSatish Balay     a->rank         = oldmat->rank;
2462a30f8f8cSSatish Balay     a->donotstash   = oldmat->donotstash;
2463a30f8f8cSSatish Balay     a->roworiented  = oldmat->roworiented;
2464f4259b30SLisandro Dalcin     a->rowindices   = NULL;
2465f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
2466a30f8f8cSSatish Balay     a->getrowactive = PETSC_FALSE;
2467f4259b30SLisandro Dalcin     a->barray       = NULL;
2468899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
2469899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
2470899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
2471899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
2472a30f8f8cSSatish Balay 
2473a30f8f8cSSatish Balay     /* hash table stuff */
2474f4259b30SLisandro Dalcin     a->ht           = NULL;
2475f4259b30SLisandro Dalcin     a->hd           = NULL;
2476a30f8f8cSSatish Balay     a->ht_size      = 0;
2477a30f8f8cSSatish Balay     a->ht_flag      = oldmat->ht_flag;
2478a30f8f8cSSatish Balay     a->ht_fact      = oldmat->ht_fact;
2479a30f8f8cSSatish Balay     a->ht_total_ct  = 0;
2480a30f8f8cSSatish Balay     a->ht_insert_ct = 0;
2481a30f8f8cSSatish Balay 
24829566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2483a30f8f8cSSatish Balay     if (oldmat->colmap) {
2484a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2485eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2486a30f8f8cSSatish Balay #else
24879566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
24889566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2489a30f8f8cSSatish Balay #endif
2490f4259b30SLisandro Dalcin     } else a->colmap = NULL;
2491387bc808SHong Zhang 
2492f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
24939566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
24949566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2495f4259b30SLisandro Dalcin     } else a->garray = NULL;
2496a30f8f8cSSatish Balay 
24979566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
24989566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
24999566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
250082327fa8SHong Zhang 
25019566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
25029566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2503387bc808SHong Zhang 
25049566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(a->slvec1, &nt));
25059566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec1, &array));
25069566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
25079566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
25089566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec1, &array));
25099566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec0, &array));
25109566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
25119566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec0, &array));
2512387bc808SHong Zhang 
2513387bc808SHong Zhang     /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
25149566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2515387bc808SHong Zhang     a->sMvctx = oldmat->sMvctx;
251682327fa8SHong Zhang 
25179566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
25189566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
2519420957c1SBarry Smith   }
25209566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2521a30f8f8cSSatish Balay   *newmat = mat;
25223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2523a30f8f8cSSatish Balay }
2524a30f8f8cSSatish Balay 
2525618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2526618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2527618cc2edSLisandro Dalcin 
25286cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2529d71ae5a4SJacob Faibussowitsch {
25307f489da9SVaclav Hapla   PetscBool isbinary;
253195936485SShri Abhyankar 
253295936485SShri Abhyankar   PetscFunctionBegin;
25339566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25345f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25359566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
253795936485SShri Abhyankar }
253895936485SShri Abhyankar 
2539789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2540d71ae5a4SJacob Faibussowitsch {
254124d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2542f4f49eeaSPierre Jolivet   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)a->B->data;
2543ca54ac64SHong Zhang   PetscReal     atmp;
254487828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
25451302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25461302d50aSBarry Smith   PetscMPIInt   rank, size;
25476497c311SBarry Smith   PetscInt     *rowners_bs, count, source;
254887828ca2SBarry Smith   PetscScalar  *va;
25498a1c53f2SBarry Smith   MatScalar    *ba;
2550f4c0e9e4SHong Zhang   MPI_Status    stat;
255124d5174aSHong Zhang 
255224d5174aSHong Zhang   PetscFunctionBegin;
25535f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25549566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25559566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2556f4c0e9e4SHong Zhang 
25579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2559f4c0e9e4SHong Zhang 
2560d0f46423SBarry Smith   bs  = A->rmap->bs;
2561f4c0e9e4SHong Zhang   mbs = a->mbs;
2562f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2563f4c0e9e4SHong Zhang   ba  = b->a;
2564f4c0e9e4SHong Zhang   bi  = b->i;
2565f4c0e9e4SHong Zhang   bj  = b->j;
2566f4c0e9e4SHong Zhang 
2567f4c0e9e4SHong Zhang   /* find ownerships */
2568d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2569f4c0e9e4SHong Zhang 
2570f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25719566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2572f4c0e9e4SHong Zhang 
2573f4c0e9e4SHong Zhang   /* row_max for B */
2574b8475685SHong Zhang   if (rank != size - 1) {
2575f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
25769371c9d4SSatish Balay       ncols = bi[1] - bi[0];
25779371c9d4SSatish Balay       bi++;
2578f4c0e9e4SHong Zhang       brow = bs * i;
2579f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2580f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2581f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2582ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
258304d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2584f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
25859371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
25869371c9d4SSatish Balay             ba++;
2587ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2588ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2589f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2590f4c0e9e4SHong Zhang           }
2591f4c0e9e4SHong Zhang         }
2592f4c0e9e4SHong Zhang         bj++;
2593f4c0e9e4SHong Zhang       }
2594f4c0e9e4SHong Zhang     }
2595f4c0e9e4SHong Zhang 
2596f4c0e9e4SHong Zhang     /* send values to its owners */
25976497c311SBarry Smith     for (PetscMPIInt dest = rank + 1; dest < size; dest++) {
2598f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2599ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
26006497c311SBarry Smith       PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2601ca54ac64SHong Zhang     }
2602f4c0e9e4SHong Zhang   }
2603f4c0e9e4SHong Zhang 
2604f4c0e9e4SHong Zhang   /* receive values */
2605ca54ac64SHong Zhang   if (rank) {
2606f4c0e9e4SHong Zhang     rvalues = work;
2607ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2608f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
26096497c311SBarry Smith       PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2610f4c0e9e4SHong Zhang       /* process values */
2611f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2612ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2613f4c0e9e4SHong Zhang       }
2614f4c0e9e4SHong Zhang     }
2615ca54ac64SHong Zhang   }
2616f4c0e9e4SHong Zhang 
26179566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
26189566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
26193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
262024d5174aSHong Zhang }
26212798e883SHong Zhang 
2622789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2623d71ae5a4SJacob Faibussowitsch {
26242798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2625d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
26263649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2627ffe4fb16SHong Zhang   Vec                bb1;
26283649974fSBarry Smith   const PetscScalar *b;
2629ffe4fb16SHong Zhang 
2630ffe4fb16SHong Zhang   PetscFunctionBegin;
26315f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26325f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2633ffe4fb16SHong Zhang 
2634a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26359566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26363ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2637a2b30743SBarry Smith   }
2638a2b30743SBarry Smith 
2639ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2640ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26419566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2642ffe4fb16SHong Zhang       its--;
2643ffe4fb16SHong Zhang     }
2644ffe4fb16SHong Zhang 
26459566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2646ffe4fb16SHong Zhang     while (its--) {
2647ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26489566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2649ffe4fb16SHong Zhang 
2650ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26519566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
26529566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26539566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26549566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2655ffe4fb16SHong Zhang 
26569566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2657ffe4fb16SHong Zhang 
2658ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26599566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
26609566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26619566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26629566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2663ffe4fb16SHong Zhang 
2664ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2665629a200eSBarry Smith       PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2666629a200eSBarry Smith       PetscCall(VecZeroEntries(mat->slvec1b));
2667ffe4fb16SHong Zhang 
26689566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26699566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
26709566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26719566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2672ffe4fb16SHong Zhang 
2673ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26749566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2675ffe4fb16SHong Zhang 
2676ffe4fb16SHong Zhang       /* local diagonal sweep */
26779566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2678ffe4fb16SHong Zhang     }
26799566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2680fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26819566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2682fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26839566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2684fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2685fa22f6d0SBarry Smith     Vec                xx1;
2686ace3abfcSBarry Smith     PetscBool          hasop;
268720f1ed55SBarry Smith     const PetscScalar *diag;
2688887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
268920f1ed55SBarry Smith     PetscInt           i, n;
2690fa22f6d0SBarry Smith 
2691fa22f6d0SBarry Smith     if (!mat->xx1) {
26929566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
26939566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2694fa22f6d0SBarry Smith     }
2695fa22f6d0SBarry Smith     xx1 = mat->xx1;
2696fa22f6d0SBarry Smith     bb1 = mat->bb1;
2697fa22f6d0SBarry Smith 
26989566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2699fa22f6d0SBarry Smith 
2700fa22f6d0SBarry Smith     if (!mat->diag) {
2701effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27029566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
27039566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2704fa22f6d0SBarry Smith     }
27059566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2706fa22f6d0SBarry Smith 
2707fa22f6d0SBarry Smith     if (hasop) {
27089566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
27099566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
271020f1ed55SBarry Smith     } else {
271120f1ed55SBarry Smith       /*
271220f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
27139566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
27149566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
271520f1ed55SBarry Smith       */
27169566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
27179566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
27189566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
27199566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
27209566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2721887ee2caSBarry Smith       if (omega == 1.0) {
272226fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
27239566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2724887ee2caSBarry Smith       } else {
272526fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
27269566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2727887ee2caSBarry Smith       }
27289566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
27299566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
27309566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27319566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
273220f1ed55SBarry Smith     }
2733fa22f6d0SBarry Smith 
2734fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2735629a200eSBarry Smith     PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2736629a200eSBarry Smith     PetscCall(VecZeroEntries(mat->slvec1b));
27379566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27389566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
27399566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
27409566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
27419566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
27429566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
27439566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27449566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27459566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2746fa22f6d0SBarry Smith 
2747fa22f6d0SBarry Smith     /* local sweep */
27489566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27499566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2750f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2752ffe4fb16SHong Zhang }
2753ffe4fb16SHong Zhang 
2754dfb205c3SBarry Smith /*@
2755d8a51d2aSBarry Smith   MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows.
2756dfb205c3SBarry Smith 
2757d083f849SBarry Smith   Collective
2758dfb205c3SBarry Smith 
2759dfb205c3SBarry Smith   Input Parameters:
2760dfb205c3SBarry Smith + comm - MPI communicator
2761dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
276211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
2763dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
2764d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
27652ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
27662ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
27672ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2768483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2769dfb205c3SBarry Smith . j    - column indices
2770dfb205c3SBarry Smith - a    - matrix values
2771dfb205c3SBarry Smith 
2772dfb205c3SBarry Smith   Output Parameter:
2773dfb205c3SBarry Smith . mat - the matrix
2774dfb205c3SBarry Smith 
2775dfb205c3SBarry Smith   Level: intermediate
2776dfb205c3SBarry Smith 
2777dfb205c3SBarry Smith   Notes:
27782ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
27792ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `a` after you have
27802ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2781dfb205c3SBarry Smith 
27822ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2783dfb205c3SBarry Smith 
27841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2785d8a51d2aSBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()`
2786dfb205c3SBarry Smith @*/
2787d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2788d71ae5a4SJacob Faibussowitsch {
2789dfb205c3SBarry Smith   PetscFunctionBegin;
27905f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
27915f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
27929566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
27939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
27949566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
27959566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
27963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2797dfb205c3SBarry Smith }
2798dfb205c3SBarry Smith 
27995d83a8b1SBarry Smith /*@
280011a5261eSBarry Smith   MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2801dfb205c3SBarry Smith 
2802d083f849SBarry Smith   Collective
2803dfb205c3SBarry Smith 
2804dfb205c3SBarry Smith   Input Parameters:
28051c4f3114SJed Brown + B  - the matrix
2806dfb205c3SBarry Smith . bs - the block size
2807d8a51d2aSBarry Smith . i  - the indices into `j` for the start of each local row (indices start with zero)
2808d8a51d2aSBarry Smith . j  - the column indices for each local row (indices start with zero) these must be sorted for each row
2809d8a51d2aSBarry Smith - v  - optional values in the matrix, pass `NULL` if not provided
2810dfb205c3SBarry Smith 
2811664954b6SBarry Smith   Level: advanced
2812664954b6SBarry Smith 
2813664954b6SBarry Smith   Notes:
2814d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2815d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2816d8a51d2aSBarry Smith   called this routine.
2817d8a51d2aSBarry Smith 
28180cd7f59aSBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28190cd7f59aSBarry Smith   and usually the numerical values as well
28200cd7f59aSBarry Smith 
2821d8a51d2aSBarry Smith   Any entries passed in that are below the diagonal are ignored
2822dfb205c3SBarry Smith 
2823d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`,
2824d8a51d2aSBarry Smith           `MatCreateMPISBAIJWithArrays()`
2825dfb205c3SBarry Smith @*/
2826d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2827d71ae5a4SJacob Faibussowitsch {
2828dfb205c3SBarry Smith   PetscFunctionBegin;
2829cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
28303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2831dfb205c3SBarry Smith }
2832dfb205c3SBarry Smith 
2833d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2834d71ae5a4SJacob Faibussowitsch {
283510c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
283610c56fdeSHong Zhang   PetscInt    *indx;
283710c56fdeSHong Zhang   PetscScalar *values;
2838dfb205c3SBarry Smith 
28394dcd73b1SHong Zhang   PetscFunctionBegin;
28409566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
284110c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
284210c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2843de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
284410c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2845de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
28464dcd73b1SHong Zhang 
28479566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28489371c9d4SSatish Balay     mbs = m / bs;
28499371c9d4SSatish Balay     Nbs = N / cbs;
285048a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2851da91a574SPierre Jolivet     nbs = n / cbs;
28524dcd73b1SHong Zhang 
28539566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2854d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2855de25e9cbSPierre Jolivet 
28569566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
28579566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2858de25e9cbSPierre Jolivet     if (rank == size - 1) {
2859de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28605f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2861de25e9cbSPierre Jolivet     }
2862de25e9cbSPierre Jolivet 
2863d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28649566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
286510c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
28669566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
28674dcd73b1SHong Zhang       nnz = nnz / bs;
28684dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
28699566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
28709566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
28714dcd73b1SHong Zhang     }
28729566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28739566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28744dcd73b1SHong Zhang 
28759566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
28769566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
28779566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
28789566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
28799566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
28809566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2881d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
28824dcd73b1SHong Zhang   }
28834dcd73b1SHong Zhang 
288410c56fdeSHong Zhang   /* numeric phase */
28859566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28869566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
28874dcd73b1SHong Zhang 
28889566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
28894dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
28909566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28914dcd73b1SHong Zhang     Ii = i + rstart;
28929566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
28939566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28944dcd73b1SHong Zhang   }
28959566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
28979566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
28983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28994dcd73b1SHong Zhang }
2900