1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \ 104a30f8f8cSSatish Balay N = nrow++ - 1; \ 105a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 106a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 107a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 108a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 111a30f8f8cSSatish Balay rp[_i] = bcol; \ 112a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 113a30f8f8cSSatish Balay a_noinsert:; \ 114a30f8f8cSSatish Balay ailen[brow] = nrow; \ 115a30f8f8cSSatish Balay } 116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 117a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 118a30f8f8cSSatish Balay { \ 119a30f8f8cSSatish Balay brow = row/bs; \ 120a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 121a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 122a30f8f8cSSatish Balay bcol = col/bs; \ 123a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 124a30f8f8cSSatish Balay low = 0; high = nrow; \ 125a30f8f8cSSatish Balay while (high-low > 3) { \ 126a30f8f8cSSatish Balay t = (low+high)/2; \ 127a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 128a30f8f8cSSatish Balay else low = t; \ 129a30f8f8cSSatish Balay } \ 130a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 131a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 132a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 133a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 134a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 135a30f8f8cSSatish Balay else *bap = value; \ 136a30f8f8cSSatish Balay goto b_noinsert; \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay } \ 139a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 140085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 141ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay b_noinsert:; \ 152a30f8f8cSSatish Balay bilen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #endif 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 160a30f8f8cSSatish Balay { 161a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 162dfbe8321SBarry Smith PetscErrorCode ierr; 1631302d50aSBarry Smith PetscInt i,N = m*n; 164a30f8f8cSSatish Balay MatScalar *vsingle; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (N > b->setvalueslen) { 168a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 16982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 170a30f8f8cSSatish Balay b->setvalueslen = N; 171a30f8f8cSSatish Balay } 172a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 173a30f8f8cSSatish Balay 174a30f8f8cSSatish Balay for (i=0; i<N; i++) { 175a30f8f8cSSatish Balay vsingle[i] = v[i]; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 178a30f8f8cSSatish Balay PetscFunctionReturn(0); 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 1814a2ae208SSatish Balay #undef __FUNCT__ 1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 184a30f8f8cSSatish Balay { 185a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 186dfbe8321SBarry Smith PetscErrorCode ierr; 1871302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 188a30f8f8cSSatish Balay MatScalar *vsingle; 189a30f8f8cSSatish Balay 190a30f8f8cSSatish Balay PetscFunctionBegin; 191a30f8f8cSSatish Balay if (N > b->setvalueslen) { 192a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 19382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 194a30f8f8cSSatish Balay b->setvalueslen = N; 195a30f8f8cSSatish Balay } 196a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 197a30f8f8cSSatish Balay for (i=0; i<N; i++) { 198a30f8f8cSSatish Balay vsingle[i] = v[i]; 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 201a30f8f8cSSatish Balay PetscFunctionReturn(0); 202a30f8f8cSSatish Balay } 203a30f8f8cSSatish Balay #endif 204a30f8f8cSSatish Balay 205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 206a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 207a30f8f8cSSatish Balay */ 2084a2ae208SSatish Balay #undef __FUNCT__ 209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 211a30f8f8cSSatish Balay { 212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 213a30f8f8cSSatish Balay MatScalar value; 214b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 215dfbe8321SBarry Smith PetscErrorCode ierr; 2161302d50aSBarry Smith PetscInt i,j,row,col; 2171302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2181302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 219521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay /* Some Variables required in the macro */ 222a30f8f8cSSatish Balay Mat A = baij->A; 223a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2241302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 225a30f8f8cSSatish Balay MatScalar *aa=a->a; 226a30f8f8cSSatish Balay 227a30f8f8cSSatish Balay Mat B = baij->B; 228a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2291302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 230a30f8f8cSSatish Balay MatScalar *ba=b->a; 231a30f8f8cSSatish Balay 2321302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2331302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 234a30f8f8cSSatish Balay MatScalar *ap,*bap; 235a30f8f8cSSatish Balay 236a30f8f8cSSatish Balay /* for stash */ 2371302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 238f65c83cfSHong Zhang MatScalar *v_loc=0; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay if(!baij->donotstash){ 2431302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 24482502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay for (i=0; i<m; i++) { 248a30f8f8cSSatish Balay if (im[i] < 0) continue; 2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 25077431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 251a30f8f8cSSatish Balay #endif 252a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 253a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 254a30f8f8cSSatish Balay for (j=0; j<n; j++) { 255f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 256a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 257a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 258a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 259a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 260a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 261a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 262a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 263a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 26577431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 266a30f8f8cSSatish Balay #endif 267a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 268a30f8f8cSSatish Balay if (mat->was_assembled) { 269a30f8f8cSSatish Balay if (!baij->colmap) { 270653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 271a30f8f8cSSatish Balay } 272a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 273a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 27471730473SSatish Balay col = col - 1; 275a30f8f8cSSatish Balay #else 27671730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 277a30f8f8cSSatish Balay #endif 278a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 279a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 280a30f8f8cSSatish Balay col = in[j]; 281a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 282a30f8f8cSSatish Balay B = baij->B; 283a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 284a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 285a30f8f8cSSatish Balay ba=b->a; 28671730473SSatish Balay } else col += in[j]%bs; 287a30f8f8cSSatish Balay } else col = in[j]; 288a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 289a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 290a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay } 293a30f8f8cSSatish Balay } else { /* off processor entry */ 294a30f8f8cSSatish Balay if (!baij->donotstash) { 295a30f8f8cSSatish Balay n_loc = 0; 296a30f8f8cSSatish Balay for (j=0; j<n; j++){ 297f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 298a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 299a30f8f8cSSatish Balay if (roworiented) { 300a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 301a30f8f8cSSatish Balay } else { 302a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay n_loc++; 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 307a30f8f8cSSatish Balay } 308a30f8f8cSSatish Balay } 309a30f8f8cSSatish Balay } 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay if(!baij->donotstash){ 312a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 313a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay PetscFunctionReturn(0); 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay 3184a2ae208SSatish Balay #undef __FUNCT__ 319e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3201302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 321a30f8f8cSSatish Balay { 3220880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 323f15d580aSBarry Smith const MatScalar *value; 324f15d580aSBarry Smith MatScalar *barray=baij->barray; 3250880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 326dfbe8321SBarry Smith PetscErrorCode ierr; 3271302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 3281302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 329521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 3300880e062SHong Zhang 331a30f8f8cSSatish Balay PetscFunctionBegin; 3320880e062SHong Zhang if(!barray) { 3330880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3340880e062SHong Zhang baij->barray = barray; 3350880e062SHong Zhang } 3360880e062SHong Zhang 3370880e062SHong Zhang if (roworiented) { 3380880e062SHong Zhang stepval = (n-1)*bs; 3390880e062SHong Zhang } else { 3400880e062SHong Zhang stepval = (m-1)*bs; 3410880e062SHong Zhang } 3420880e062SHong Zhang for (i=0; i<m; i++) { 3430880e062SHong Zhang if (im[i] < 0) continue; 3442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 34577431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3460880e062SHong Zhang #endif 3470880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3480880e062SHong Zhang row = im[i] - rstart; 3490880e062SHong Zhang for (j=0; j<n; j++) { 3500880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3510880e062SHong Zhang if ((roworiented) && (n == 1)) { 352f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3530880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 354f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3550880e062SHong Zhang } else { /* Here a copy is required */ 3560880e062SHong Zhang if (roworiented) { 3570880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3580880e062SHong Zhang } else { 3590880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3600880e062SHong Zhang } 3610880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3620880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3630880e062SHong Zhang *barray++ = *value++; 3640880e062SHong Zhang } 3650880e062SHong Zhang } 3660880e062SHong Zhang barray -=bs2; 3670880e062SHong Zhang } 3680880e062SHong Zhang 3690880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3700880e062SHong Zhang col = in[j] - cstart; 3710880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3720880e062SHong Zhang } 3730880e062SHong Zhang else if (in[j] < 0) continue; 3742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 37577431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3760880e062SHong Zhang #endif 3770880e062SHong Zhang else { 3780880e062SHong Zhang if (mat->was_assembled) { 3790880e062SHong Zhang if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3810880e062SHong Zhang } 3820880e062SHong Zhang 3832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3840880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3851302d50aSBarry Smith { PetscInt data; 3860880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3870880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3880880e062SHong Zhang } 3890880e062SHong Zhang #else 3900880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3910880e062SHong Zhang #endif 3920880e062SHong Zhang #endif 3930880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3940880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3950880e062SHong Zhang col = (col - 1)/bs; 3960880e062SHong Zhang #else 3970880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3980880e062SHong Zhang #endif 3990880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4000880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4010880e062SHong Zhang col = in[j]; 4020880e062SHong Zhang } 4030880e062SHong Zhang } 4040880e062SHong Zhang else col = in[j]; 405e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4060880e062SHong Zhang } 4070880e062SHong Zhang } 4080880e062SHong Zhang } else { 4090880e062SHong Zhang if (!baij->donotstash) { 4100880e062SHong Zhang if (roworiented) { 4110880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4120880e062SHong Zhang } else { 4130880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4140880e062SHong Zhang } 4150880e062SHong Zhang } 4160880e062SHong Zhang } 4170880e062SHong Zhang } 4180880e062SHong Zhang PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 4224a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 424a30f8f8cSSatish Balay { 425f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4266849ba73SBarry Smith PetscErrorCode ierr; 427521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 4281302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 429a30f8f8cSSatish Balay 430a30f8f8cSSatish Balay PetscFunctionBegin; 431a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43277431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 43377431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 434a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 435a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 436a30f8f8cSSatish Balay for (j=0; j<n; j++) { 43777431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 43877431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 439a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 440a30f8f8cSSatish Balay col = idxn[j] - bscstart; 441c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 442a30f8f8cSSatish Balay } else { 443a30f8f8cSSatish Balay if (!baij->colmap) { 444653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 445a30f8f8cSSatish Balay } 446a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 447a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 448a30f8f8cSSatish Balay data --; 449a30f8f8cSSatish Balay #else 450a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 451a30f8f8cSSatish Balay #endif 452a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 453a30f8f8cSSatish Balay else { 454a30f8f8cSSatish Balay col = data + idxn[j]%bs; 455e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 456a30f8f8cSSatish Balay } 457a30f8f8cSSatish Balay } 458a30f8f8cSSatish Balay } 459a30f8f8cSSatish Balay } else { 46029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 461a30f8f8cSSatish Balay } 462a30f8f8cSSatish Balay } 463a30f8f8cSSatish Balay PetscFunctionReturn(0); 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay 4664a2ae208SSatish Balay #undef __FUNCT__ 4674a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 468dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 469a30f8f8cSSatish Balay { 470a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 471dfbe8321SBarry Smith PetscErrorCode ierr; 472a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 473a30f8f8cSSatish Balay 474a30f8f8cSSatish Balay PetscFunctionBegin; 475a30f8f8cSSatish Balay if (baij->size == 1) { 476a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 479f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 480a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 481a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 482a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 483a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 484d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 485a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 486a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4870b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4880b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4890b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4900b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 4910b8dc8d2SHong Zhang PetscInt *jj,*garray=baij->garray,rstart=baij->rstart,nz; 4920b8dc8d2SHong Zhang PetscInt brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs; 4930b8dc8d2SHong Zhang MatScalar *v; 4940b8dc8d2SHong Zhang 4950b8dc8d2SHong Zhang ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 4960b8dc8d2SHong Zhang rsum2 = rsum + mat->N; 4970b8dc8d2SHong Zhang ierr = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 4980b8dc8d2SHong Zhang /* Amat */ 4990b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5000b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5010b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5020b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5030b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5040b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5050b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5060b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5070b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5080b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5090b8dc8d2SHong Zhang /* non-diagonal block */ 5100b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5110b8dc8d2SHong Zhang } 5120b8dc8d2SHong Zhang } 5130b8dc8d2SHong Zhang } 5140b8dc8d2SHong Zhang } 5150b8dc8d2SHong Zhang /* Bmat */ 5160b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5170b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5180b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5190b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5200b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5210b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5220b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5230b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5240b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5250b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5260b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5270b8dc8d2SHong Zhang } 5280b8dc8d2SHong Zhang } 5290b8dc8d2SHong Zhang } 5300b8dc8d2SHong Zhang } 5310b8dc8d2SHong Zhang ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5320b8dc8d2SHong Zhang *norm = 0.0; 5330b8dc8d2SHong Zhang for (col=0; col<mat->N; col++) { 5340b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 537a30f8f8cSSatish Balay } else { 53829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay PetscFunctionReturn(0); 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay 5444a2ae208SSatish Balay #undef __FUNCT__ 5454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 546dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 547a30f8f8cSSatish Balay { 548a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 549dfbe8321SBarry Smith PetscErrorCode ierr; 5501302d50aSBarry Smith PetscInt nstash,reallocs; 551a30f8f8cSSatish Balay InsertMode addv; 552a30f8f8cSSatish Balay 553a30f8f8cSSatish Balay PetscFunctionBegin; 554a30f8f8cSSatish Balay if (baij->donotstash) { 555a30f8f8cSSatish Balay PetscFunctionReturn(0); 556a30f8f8cSSatish Balay } 557a30f8f8cSSatish Balay 558a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 559a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 560a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 562a30f8f8cSSatish Balay } 563a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 566a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 567a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 56863ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 569a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 57063ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 571a30f8f8cSSatish Balay PetscFunctionReturn(0); 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 5744a2ae208SSatish Balay #undef __FUNCT__ 5754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 576dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 577a30f8f8cSSatish Balay { 578a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 579a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 580a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 5816849ba73SBarry Smith PetscErrorCode ierr; 58213f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5831302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 58413f74950SBarry Smith PetscMPIInt n; 585a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 586a30f8f8cSSatish Balay MatScalar *val; 587a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay PetscFunctionBegin; 590a30f8f8cSSatish Balay 591a30f8f8cSSatish Balay if (!baij->donotstash) { 592a30f8f8cSSatish Balay while (1) { 593a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 594a30f8f8cSSatish Balay if (!flg) break; 595a30f8f8cSSatish Balay 596a30f8f8cSSatish Balay for (i=0; i<n;) { 597a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 598a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 599a30f8f8cSSatish Balay if (j < n) ncols = j-i; 600a30f8f8cSSatish Balay else ncols = n-i; 601a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 602a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 603a30f8f8cSSatish Balay i = j; 604a30f8f8cSSatish Balay } 605a30f8f8cSSatish Balay } 606a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 607a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 608a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 609a30f8f8cSSatish Balay restore the original flags */ 610a30f8f8cSSatish Balay r1 = baij->roworiented; 611a30f8f8cSSatish Balay r2 = a->roworiented; 612a30f8f8cSSatish Balay r3 = b->roworiented; 613a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 614a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 615a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 616a30f8f8cSSatish Balay while (1) { 617a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 618a30f8f8cSSatish Balay if (!flg) break; 619a30f8f8cSSatish Balay 620a30f8f8cSSatish Balay for (i=0; i<n;) { 621a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 622a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 623a30f8f8cSSatish Balay if (j < n) ncols = j-i; 624a30f8f8cSSatish Balay else ncols = n-i; 625a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 626a30f8f8cSSatish Balay i = j; 627a30f8f8cSSatish Balay } 628a30f8f8cSSatish Balay } 629a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 630a30f8f8cSSatish Balay baij->roworiented = r1; 631a30f8f8cSSatish Balay a->roworiented = r2; 632a30f8f8cSSatish Balay b->roworiented = r3; 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 636a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 637a30f8f8cSSatish Balay 638a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 639a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 640a30f8f8cSSatish Balay /* 641a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 642a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 643a30f8f8cSSatish Balay */ 644a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 645a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 646a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 647c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 653a30f8f8cSSatish Balay } 6544eb6d288SHong Zhang b->compressedrow.use = PETSC_TRUE; 655a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 656a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (baij->rowvalues) { 659a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 660a30f8f8cSSatish Balay baij->rowvalues = 0; 661a30f8f8cSSatish Balay } 6625222a1afSHong Zhang 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 6664a2ae208SSatish Balay #undef __FUNCT__ 6674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6686849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 669a30f8f8cSSatish Balay { 670a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 671dfbe8321SBarry Smith PetscErrorCode ierr; 672521d7252SBarry Smith PetscInt bs = mat->bs; 6731302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 67432077d6dSBarry Smith PetscTruth iascii,isdraw; 675b0a32e0cSBarry Smith PetscViewer sviewer; 676f3ef73ceSBarry Smith PetscViewerFormat format; 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay PetscFunctionBegin; 67932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 680fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68132077d6dSBarry Smith if (iascii) { 682b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 683456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 684a30f8f8cSSatish Balay MatInfo info; 685a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 686a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 68777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 68877431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 689521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 690a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 694b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 695a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 696a30f8f8cSSatish Balay PetscFunctionReturn(0); 697fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 69877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 699a30f8f8cSSatish Balay PetscFunctionReturn(0); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay 703a30f8f8cSSatish Balay if (isdraw) { 704b0a32e0cSBarry Smith PetscDraw draw; 705a30f8f8cSSatish Balay PetscTruth isnull; 706b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 707b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay 710a30f8f8cSSatish Balay if (size == 1) { 711e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 713a30f8f8cSSatish Balay } else { 714a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 715a30f8f8cSSatish Balay Mat A; 71665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 71765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7181302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 719a30f8f8cSSatish Balay MatScalar *a; 720a30f8f8cSSatish Balay 721f204ca49SKris Buschelman /* Should this be the same type as mat? */ 722f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 723a30f8f8cSSatish Balay if (!rank) { 724f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 725a30f8f8cSSatish Balay } else { 726f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 727a30f8f8cSSatish Balay } 728f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 729521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 731a30f8f8cSSatish Balay 732a30f8f8cSSatish Balay /* copy over the A part */ 73365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 734a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7351302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 738a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 739a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 740a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 741a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 742a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 743a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 744a30f8f8cSSatish Balay col++; a += bs; 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay } 747a30f8f8cSSatish Balay } 748a30f8f8cSSatish Balay /* copy over the B part */ 74965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 751a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 752a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 753a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 754a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 755a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 756a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 757a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 758a30f8f8cSSatish Balay col++; a += bs; 759a30f8f8cSSatish Balay } 760a30f8f8cSSatish Balay } 761a30f8f8cSSatish Balay } 762a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 763a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 764a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 765a30f8f8cSSatish Balay /* 766a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 767b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 768a30f8f8cSSatish Balay */ 769b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77065d70643SHong Zhang if (!rank) { 771e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 773a30f8f8cSSatish Balay } 774b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 775a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 776a30f8f8cSSatish Balay } 777a30f8f8cSSatish Balay PetscFunctionReturn(0); 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay 7804a2ae208SSatish Balay #undef __FUNCT__ 7814a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 782dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 783a30f8f8cSSatish Balay { 784dfbe8321SBarry Smith PetscErrorCode ierr; 78532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 786a30f8f8cSSatish Balay 787a30f8f8cSSatish Balay PetscFunctionBegin; 78832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 789fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 790b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 791fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 79232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 793a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 794a30f8f8cSSatish Balay } else { 7951302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 796a30f8f8cSSatish Balay } 797a30f8f8cSSatish Balay PetscFunctionReturn(0); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay 8004a2ae208SSatish Balay #undef __FUNCT__ 8014a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 802dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 803a30f8f8cSSatish Balay { 804a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 805dfbe8321SBarry Smith PetscErrorCode ierr; 806a30f8f8cSSatish Balay 807a30f8f8cSSatish Balay PetscFunctionBegin; 808a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 80977431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 810a30f8f8cSSatish Balay #endif 811a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 812a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 813a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 815a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 816a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 817a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 818a30f8f8cSSatish Balay #else 819a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 820a30f8f8cSSatish Balay #endif 821a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 822a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 823a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 82440781036SHong Zhang if (baij->slvec0) { 82540781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 82640781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 82740781036SHong Zhang } 82840781036SHong Zhang if (baij->slvec1) { 82940781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83040781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83140781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 83240781036SHong Zhang } 83340781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 834a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 835a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 836a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 837a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 838a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 839a30f8f8cSSatish Balay #endif 840a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 841901853e0SKris Buschelman 842901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 843901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 844901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 845901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 846a30f8f8cSSatish Balay PetscFunctionReturn(0); 847a30f8f8cSSatish Balay } 848a30f8f8cSSatish Balay 8494a2ae208SSatish Balay #undef __FUNCT__ 850a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 851dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 852a9d4b620SHong Zhang { 853a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 854dfbe8321SBarry Smith PetscErrorCode ierr; 855521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 856a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 857a9d4b620SHong Zhang 858a9d4b620SHong Zhang PetscFunctionBegin; 859a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 860a9d4b620SHong Zhang if (nt != A->n) { 861a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 862a9d4b620SHong Zhang } 863a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 864a9d4b620SHong Zhang if (nt != A->m) { 865a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 866a9d4b620SHong Zhang } 867a9d4b620SHong Zhang 868a9d4b620SHong Zhang /* diagonal part */ 869a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8702dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 871a9d4b620SHong Zhang 872a9d4b620SHong Zhang /* subdiagonal part */ 873a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 874a9d4b620SHong Zhang 875a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8761ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8771ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 878a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8791ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 880a9d4b620SHong Zhang 881a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 8821ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 883a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 884a9d4b620SHong Zhang 885a9d4b620SHong Zhang /* supperdiagonal part */ 886a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 887a9d4b620SHong Zhang 888a9d4b620SHong Zhang PetscFunctionReturn(0); 889a9d4b620SHong Zhang } 890a9d4b620SHong Zhang 891a9d4b620SHong Zhang #undef __FUNCT__ 89240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 893dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 894a30f8f8cSSatish Balay { 895a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 896dfbe8321SBarry Smith PetscErrorCode ierr; 8971302d50aSBarry Smith PetscInt nt; 898a30f8f8cSSatish Balay 899a30f8f8cSSatish Balay PetscFunctionBegin; 900a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 901b5df2d14SHong Zhang if (nt != A->n) { 90229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 903a30f8f8cSSatish Balay } 904a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 905b5df2d14SHong Zhang if (nt != A->m) { 90629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 907a30f8f8cSSatish Balay } 90865d70643SHong Zhang 909b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 910b941877fSHong Zhang /* do diagonal part */ 911b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 912b941877fSHong Zhang /* do supperdiagonal part */ 913b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 914b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 915b941877fSHong Zhang /* do subdiagonal part */ 916b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 917b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 918b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 91965d70643SHong Zhang 920a30f8f8cSSatish Balay PetscFunctionReturn(0); 921a30f8f8cSSatish Balay } 922a30f8f8cSSatish Balay 9234a2ae208SSatish Balay #undef __FUNCT__ 9244a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 925dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 926a30f8f8cSSatish Balay { 927de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 928dfbe8321SBarry Smith PetscErrorCode ierr; 929521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 930a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 931a9d4b620SHong Zhang 932a9d4b620SHong Zhang PetscFunctionBegin; 933a9d4b620SHong Zhang /* 93456faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 93556faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 936a9d4b620SHong Zhang */ 937a9d4b620SHong Zhang /* diagonal part */ 938a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9392dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 940a9d4b620SHong Zhang 941a9d4b620SHong Zhang /* subdiagonal part */ 942a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 943a9d4b620SHong Zhang 944a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9451ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9461ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 947a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9481ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 949a9d4b620SHong Zhang 950a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9511ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 952a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 953a9d4b620SHong Zhang 954a9d4b620SHong Zhang /* supperdiagonal part */ 955a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 956a9d4b620SHong Zhang 957a9d4b620SHong Zhang PetscFunctionReturn(0); 958a9d4b620SHong Zhang } 959a9d4b620SHong Zhang 960a9d4b620SHong Zhang #undef __FUNCT__ 961a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 962dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 963a9d4b620SHong Zhang { 964a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 969b941877fSHong Zhang /* do diagonal part */ 970b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 971b941877fSHong Zhang /* do supperdiagonal part */ 972b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 973de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 974de8b6608SHong Zhang 975b941877fSHong Zhang /* do subdiagonal part */ 976a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 977a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 978a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 979aa482183SHong Zhang 980a30f8f8cSSatish Balay PetscFunctionReturn(0); 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay 9834a2ae208SSatish Balay #undef __FUNCT__ 9844a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 985dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 986a30f8f8cSSatish Balay { 987dfbe8321SBarry Smith PetscErrorCode ierr; 9885a7c0312SHong Zhang 989a30f8f8cSSatish Balay PetscFunctionBegin; 9905a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 9915a7c0312SHong Zhang PetscFunctionReturn(0); 992a30f8f8cSSatish Balay } 993a30f8f8cSSatish Balay 9944a2ae208SSatish Balay #undef __FUNCT__ 9954a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 996dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 997a30f8f8cSSatish Balay { 998dfbe8321SBarry Smith PetscErrorCode ierr; 9995a7c0312SHong Zhang 1000a30f8f8cSSatish Balay PetscFunctionBegin; 10015a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10025a7c0312SHong Zhang PetscFunctionReturn(0); 1003a30f8f8cSSatish Balay } 1004a30f8f8cSSatish Balay 1005a30f8f8cSSatish Balay /* 1006a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1007a30f8f8cSSatish Balay diagonal block 1008a30f8f8cSSatish Balay */ 10094a2ae208SSatish Balay #undef __FUNCT__ 10104a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1011dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1012a30f8f8cSSatish Balay { 1013a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1014dfbe8321SBarry Smith PetscErrorCode ierr; 1015a30f8f8cSSatish Balay 1016a30f8f8cSSatish Balay PetscFunctionBegin; 101729bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1018a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1019a30f8f8cSSatish Balay PetscFunctionReturn(0); 1020a30f8f8cSSatish Balay } 1021a30f8f8cSSatish Balay 10224a2ae208SSatish Balay #undef __FUNCT__ 10234a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1024f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1025a30f8f8cSSatish Balay { 1026a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1027dfbe8321SBarry Smith PetscErrorCode ierr; 1028a30f8f8cSSatish Balay 1029a30f8f8cSSatish Balay PetscFunctionBegin; 1030f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1031f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1032a30f8f8cSSatish Balay PetscFunctionReturn(0); 1033a30f8f8cSSatish Balay } 1034a30f8f8cSSatish Balay 10354a2ae208SSatish Balay #undef __FUNCT__ 10364a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10371302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1038a30f8f8cSSatish Balay { 1039a30f8f8cSSatish Balay PetscFunctionBegin; 1040*d23016edSBarry Smith if (matin) SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format"); 1041a30f8f8cSSatish Balay PetscFunctionReturn(0); 1042a30f8f8cSSatish Balay } 1043a30f8f8cSSatish Balay 10444a2ae208SSatish Balay #undef __FUNCT__ 10454a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10461302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1047a30f8f8cSSatish Balay { 1048a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1049a30f8f8cSSatish Balay 1050a30f8f8cSSatish Balay PetscFunctionBegin; 1051abc0a331SBarry Smith if (!baij->getrowactive) { 1052abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1053a30f8f8cSSatish Balay } 1054a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1055a30f8f8cSSatish Balay PetscFunctionReturn(0); 1056a30f8f8cSSatish Balay } 1057a30f8f8cSSatish Balay 10584a2ae208SSatish Balay #undef __FUNCT__ 10594a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1060dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1061a30f8f8cSSatish Balay { 1062a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1063dfbe8321SBarry Smith PetscErrorCode ierr; 1064a30f8f8cSSatish Balay 1065a30f8f8cSSatish Balay PetscFunctionBegin; 1066a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1067a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1068a30f8f8cSSatish Balay PetscFunctionReturn(0); 1069a30f8f8cSSatish Balay } 1070a30f8f8cSSatish Balay 10714a2ae208SSatish Balay #undef __FUNCT__ 10724a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1073dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1074a30f8f8cSSatish Balay { 1075a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1076a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1077dfbe8321SBarry Smith PetscErrorCode ierr; 1078a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1079a30f8f8cSSatish Balay 1080a30f8f8cSSatish Balay PetscFunctionBegin; 1081521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1082a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1083a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1084a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1085a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1086a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1087a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1088a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1089a30f8f8cSSatish Balay info->nz_used = isend[0]; 1090a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1091a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1092a30f8f8cSSatish Balay info->memory = isend[3]; 1093a30f8f8cSSatish Balay info->mallocs = isend[4]; 1094a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1095d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1096a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1097a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1098a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1099a30f8f8cSSatish Balay info->memory = irecv[3]; 1100a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1101a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1102d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1103a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1104a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1105a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1106a30f8f8cSSatish Balay info->memory = irecv[3]; 1107a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1108a30f8f8cSSatish Balay } else { 110977431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1110a30f8f8cSSatish Balay } 1111f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1112f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1113f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1114f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1115a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1116a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1117a30f8f8cSSatish Balay info->factor_mallocs = 0; 1118a30f8f8cSSatish Balay PetscFunctionReturn(0); 1119a30f8f8cSSatish Balay } 1120a30f8f8cSSatish Balay 11214a2ae208SSatish Balay #undef __FUNCT__ 11224a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1123dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1124a30f8f8cSSatish Balay { 1125a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1126dfbe8321SBarry Smith PetscErrorCode ierr; 1127a30f8f8cSSatish Balay 1128a30f8f8cSSatish Balay PetscFunctionBegin; 1129e98b92d7SKris Buschelman switch (op) { 1130e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1131e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1132e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1133e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1134e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1135e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1136e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1137a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1139e98b92d7SKris Buschelman break; 1140e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1141a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1142a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1143a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1144e98b92d7SKris Buschelman break; 1145e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1146e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1147e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 114863ba0a88SBarry Smith ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr); 1149e98b92d7SKris Buschelman break; 1150e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1151a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1152a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1153a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1154e98b92d7SKris Buschelman break; 1155e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1156a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1157e98b92d7SKris Buschelman break; 1158e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 115929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1160e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1161a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1162e98b92d7SKris Buschelman break; 11639a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 11649a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 11659a4540c5SBarry Smith case MAT_HERMITIAN: 11669a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 116777e54ba9SKris Buschelman case MAT_SYMMETRIC: 116877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 11699a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 11709a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 11719a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 117277e54ba9SKris Buschelman break; 1173e98b92d7SKris Buschelman default: 117429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1175a30f8f8cSSatish Balay } 1176a30f8f8cSSatish Balay PetscFunctionReturn(0); 1177a30f8f8cSSatish Balay } 1178a30f8f8cSSatish Balay 11794a2ae208SSatish Balay #undef __FUNCT__ 11808115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1181dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1182a30f8f8cSSatish Balay { 1183dfbe8321SBarry Smith PetscErrorCode ierr; 1184a30f8f8cSSatish Balay PetscFunctionBegin; 1185999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 11868115998fSBarry Smith PetscFunctionReturn(0); 1187a30f8f8cSSatish Balay } 1188a30f8f8cSSatish Balay 11894a2ae208SSatish Balay #undef __FUNCT__ 11904a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1191dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1192a30f8f8cSSatish Balay { 1193a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1194a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1195dfbe8321SBarry Smith PetscErrorCode ierr; 11965e90f9d9SHong Zhang PetscInt nv,m,n; 1197b3bf805bSHong Zhang PetscTruth flg; 1198a30f8f8cSSatish Balay 1199a30f8f8cSSatish Balay PetscFunctionBegin; 1200a30f8f8cSSatish Balay if (ll != rr){ 1201b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1202b3bf805bSHong Zhang if (!flg) 120329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1204a30f8f8cSSatish Balay } 1205b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1206b3bf805bSHong Zhang 12075e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12085e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1209b3bf805bSHong Zhang 12105e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12115e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12125e90f9d9SHong Zhang 1213a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 12145e90f9d9SHong Zhang 12155e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1216a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12175e90f9d9SHong Zhang 12185e90f9d9SHong Zhang /* scale the diagonal part */ 1219a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1220a30f8f8cSSatish Balay 12215e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1222a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1223a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1224a30f8f8cSSatish Balay PetscFunctionReturn(0); 1225a30f8f8cSSatish Balay } 1226a30f8f8cSSatish Balay 12274a2ae208SSatish Balay #undef __FUNCT__ 12284a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1229dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1230a30f8f8cSSatish Balay { 1231a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1232a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 12331302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1234dfbe8321SBarry Smith PetscErrorCode ierr; 1235a30f8f8cSSatish Balay 1236a30f8f8cSSatish Balay PetscFunctionBegin; 1237a30f8f8cSSatish Balay if (!a->rank) { 1238a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1239a30f8f8cSSatish Balay } 12401302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1241a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1242a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1243a30f8f8cSSatish Balay PetscFunctionReturn(0); 1244a30f8f8cSSatish Balay } 1245a30f8f8cSSatish Balay 12464a2ae208SSatish Balay #undef __FUNCT__ 12474a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1248dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1249a30f8f8cSSatish Balay { 1250f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1251dfbe8321SBarry Smith PetscErrorCode ierr; 1252a30f8f8cSSatish Balay 1253a30f8f8cSSatish Balay PetscFunctionBegin; 1254a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1255a30f8f8cSSatish Balay PetscFunctionReturn(0); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay 12586849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12614a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1262dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1263a30f8f8cSSatish Balay { 1264a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1265a30f8f8cSSatish Balay Mat a,b,c,d; 1266a30f8f8cSSatish Balay PetscTruth flg; 1267dfbe8321SBarry Smith PetscErrorCode ierr; 1268a30f8f8cSSatish Balay 1269a30f8f8cSSatish Balay PetscFunctionBegin; 1270a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1271a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1272a30f8f8cSSatish Balay 1273a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1274abc0a331SBarry Smith if (flg) { 1275a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1276a30f8f8cSSatish Balay } 1277a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1278a30f8f8cSSatish Balay PetscFunctionReturn(0); 1279a30f8f8cSSatish Balay } 1280a30f8f8cSSatish Balay 12814a2ae208SSatish Balay #undef __FUNCT__ 12824a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1283dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1284273d9f13SBarry Smith { 1285dfbe8321SBarry Smith PetscErrorCode ierr; 1286273d9f13SBarry Smith 1287273d9f13SBarry Smith PetscFunctionBegin; 1288273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1289273d9f13SBarry Smith PetscFunctionReturn(0); 1290273d9f13SBarry Smith } 1291a5e6ed63SBarry Smith 1292a5e6ed63SBarry Smith #undef __FUNCT__ 1293a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 12941302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1295a5e6ed63SBarry Smith { 12966849ba73SBarry Smith PetscErrorCode ierr; 12971302d50aSBarry Smith PetscInt i; 1298a5e6ed63SBarry Smith PetscTruth flg; 1299a5e6ed63SBarry Smith 13006849ba73SBarry Smith PetscFunctionBegin; 1301a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1302a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1303a5e6ed63SBarry Smith if (!flg) { 13041302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1305a5e6ed63SBarry Smith } 1306a5e6ed63SBarry Smith } 1307a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1308a5e6ed63SBarry Smith PetscFunctionReturn(0); 1309a5e6ed63SBarry Smith } 1310a5e6ed63SBarry Smith 1311a5e6ed63SBarry Smith 1312a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1313a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1314a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1315a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1316a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1317a9d4b620SHong Zhang MatMult_MPISBAIJ, 131897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1319a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1320a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1321a30f8f8cSSatish Balay 0, 1322a30f8f8cSSatish Balay 0, 1323a30f8f8cSSatish Balay 0, 132497304618SKris Buschelman /*10*/ 0, 1325a30f8f8cSSatish Balay 0, 1326a30f8f8cSSatish Balay 0, 13272798e883SHong Zhang MatRelax_MPISBAIJ, 1328a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 132997304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1330a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1331a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1332a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1333a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 133497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1335a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1336a30f8f8cSSatish Balay 0, 1337a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1338a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1339dcf5cc72SBarry Smith /*25*/ 0, 1340a30f8f8cSSatish Balay 0, 1341a30f8f8cSSatish Balay 0, 1342a30f8f8cSSatish Balay 0, 1343a30f8f8cSSatish Balay 0, 134497304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1345b5df2d14SHong Zhang 0, 1346a30f8f8cSSatish Balay 0, 1347a30f8f8cSSatish Balay 0, 1348a30f8f8cSSatish Balay 0, 134997304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1350a30f8f8cSSatish Balay 0, 1351a30f8f8cSSatish Balay 0, 1352a30f8f8cSSatish Balay 0, 1353a30f8f8cSSatish Balay 0, 135497304618SKris Buschelman /*40*/ 0, 1355a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1356d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1357a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1358a30f8f8cSSatish Balay 0, 135997304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1360a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1361a30f8f8cSSatish Balay 0, 1362a30f8f8cSSatish Balay 0, 1363a30f8f8cSSatish Balay 0, 1364521d7252SBarry Smith /*50*/ 0, 1365a30f8f8cSSatish Balay 0, 1366a30f8f8cSSatish Balay 0, 1367a30f8f8cSSatish Balay 0, 1368a30f8f8cSSatish Balay 0, 136997304618SKris Buschelman /*55*/ 0, 1370a30f8f8cSSatish Balay 0, 1371a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1372a30f8f8cSSatish Balay 0, 1373a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 137497304618SKris Buschelman /*60*/ 0, 1375a30f8f8cSSatish Balay 0, 1376a30f8f8cSSatish Balay 0, 13778a124369SBarry Smith MatGetPetscMaps_Petsc, 137824d5174aSHong Zhang 0, 137997304618SKris Buschelman /*65*/ 0, 138024d5174aSHong Zhang 0, 138124d5174aSHong Zhang 0, 138224d5174aSHong Zhang 0, 138324d5174aSHong Zhang 0, 138497304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 138524d5174aSHong Zhang 0, 138697304618SKris Buschelman 0, 138797304618SKris Buschelman 0, 138897304618SKris Buschelman 0, 138997304618SKris Buschelman /*75*/ 0, 139097304618SKris Buschelman 0, 139197304618SKris Buschelman 0, 139297304618SKris Buschelman 0, 139397304618SKris Buschelman 0, 139497304618SKris Buschelman /*80*/ 0, 139597304618SKris Buschelman 0, 139697304618SKris Buschelman 0, 139797304618SKris Buschelman 0, 1398865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1399865e5f61SKris Buschelman /*85*/ 0, 1400865e5f61SKris Buschelman 0, 1401865e5f61SKris Buschelman 0, 1402865e5f61SKris Buschelman 0, 1403865e5f61SKris Buschelman 0, 1404865e5f61SKris Buschelman /*90*/ 0, 1405865e5f61SKris Buschelman 0, 1406865e5f61SKris Buschelman 0, 1407865e5f61SKris Buschelman 0, 1408865e5f61SKris Buschelman 0, 1409865e5f61SKris Buschelman /*95*/ 0, 1410865e5f61SKris Buschelman 0, 1411865e5f61SKris Buschelman 0, 1412865e5f61SKris Buschelman 0}; 1413a30f8f8cSSatish Balay 1414a30f8f8cSSatish Balay 1415a30f8f8cSSatish Balay EXTERN_C_BEGIN 14164a2ae208SSatish Balay #undef __FUNCT__ 14174a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1418be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1419a30f8f8cSSatish Balay { 1420a30f8f8cSSatish Balay PetscFunctionBegin; 1421a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1422a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1423a30f8f8cSSatish Balay PetscFunctionReturn(0); 1424a30f8f8cSSatish Balay } 1425a30f8f8cSSatish Balay EXTERN_C_END 1426a30f8f8cSSatish Balay 1427273d9f13SBarry Smith EXTERN_C_BEGIN 14284a2ae208SSatish Balay #undef __FUNCT__ 1429a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1430be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1431a23d5eceSKris Buschelman { 1432a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1433dfbe8321SBarry Smith PetscErrorCode ierr; 14341302d50aSBarry Smith PetscInt i,mbs,Mbs; 1435a23d5eceSKris Buschelman 1436a23d5eceSKris Buschelman PetscFunctionBegin; 1437a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1438a23d5eceSKris Buschelman 1439a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1440a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1441a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 144277431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 144377431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1444a23d5eceSKris Buschelman if (d_nnz) { 1445a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 144677431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1447a23d5eceSKris Buschelman } 1448a23d5eceSKris Buschelman } 1449a23d5eceSKris Buschelman if (o_nnz) { 1450a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 145177431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1452a23d5eceSKris Buschelman } 1453a23d5eceSKris Buschelman } 1454a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1455a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1456a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1457a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1458a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1459a23d5eceSKris Buschelman 1460a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1461a23d5eceSKris Buschelman mbs = B->m/bs; 1462a23d5eceSKris Buschelman Mbs = B->M/bs; 1463a23d5eceSKris Buschelman if (mbs*bs != B->m) { 146477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1465a23d5eceSKris Buschelman } 1466a23d5eceSKris Buschelman 1467521d7252SBarry Smith B->bs = bs; 1468a23d5eceSKris Buschelman b->bs2 = bs*bs; 1469a23d5eceSKris Buschelman b->mbs = mbs; 1470a23d5eceSKris Buschelman b->nbs = mbs; 1471a23d5eceSKris Buschelman b->Mbs = Mbs; 1472a23d5eceSKris Buschelman b->Nbs = Mbs; 1473a23d5eceSKris Buschelman 1474a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1475a23d5eceSKris Buschelman b->rowners[0] = 0; 1476a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1477a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1478a23d5eceSKris Buschelman } 1479a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1480a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1481a23d5eceSKris Buschelman b->cstart = b->rstart; 1482a23d5eceSKris Buschelman b->cend = b->rend; 1483a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1484a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1485a23d5eceSKris Buschelman } 1486a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1487a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1488a23d5eceSKris Buschelman 1489a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1490a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1491a23d5eceSKris Buschelman 1492f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1493f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->A,B->m,B->m,B->m,B->m);CHKERRQ(ierr); 14949c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1495c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 149652e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 14979c097c71SKris Buschelman 1498f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1499f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->B,B->m,B->M,B->m,B->M);CHKERRQ(ierr); 15004aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1501589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 150252e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1503a23d5eceSKris Buschelman 1504a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1505a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1506a23d5eceSKris Buschelman 1507a23d5eceSKris Buschelman PetscFunctionReturn(0); 1508a23d5eceSKris Buschelman } 1509a23d5eceSKris Buschelman EXTERN_C_END 1510a23d5eceSKris Buschelman 15110bad9183SKris Buschelman /*MC 1512fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 15130bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 15140bad9183SKris Buschelman 15150bad9183SKris Buschelman Options Database Keys: 15160bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 15170bad9183SKris Buschelman 15180bad9183SKris Buschelman Level: beginner 15190bad9183SKris Buschelman 15200bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 15210bad9183SKris Buschelman M*/ 15220bad9183SKris Buschelman 1523a23d5eceSKris Buschelman EXTERN_C_BEGIN 1524a23d5eceSKris Buschelman #undef __FUNCT__ 15254a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1526be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1527b5df2d14SHong Zhang { 1528b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1529dfbe8321SBarry Smith PetscErrorCode ierr; 1530b5df2d14SHong Zhang PetscTruth flg; 1531b5df2d14SHong Zhang 1532b5df2d14SHong Zhang PetscFunctionBegin; 1533b5df2d14SHong Zhang 1534b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1535b0a32e0cSBarry Smith B->data = (void*)b; 1536b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1537b5df2d14SHong Zhang 1538b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1539b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1540b5df2d14SHong Zhang B->mapping = 0; 1541b5df2d14SHong Zhang B->factor = 0; 1542b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1543b5df2d14SHong Zhang 1544b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1545b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1546b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1547b5df2d14SHong Zhang 1548b5df2d14SHong Zhang /* build local table of row and column ownerships */ 15491302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1550273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1551273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 155252e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1553b5df2d14SHong Zhang 1554b5df2d14SHong Zhang /* build cache for off array entries formed */ 1555b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1556b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1557b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1558b5df2d14SHong Zhang b->garray = PETSC_NULL; 1559b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1560b5df2d14SHong Zhang 1561f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1562b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 156364a35ccbSBarry Smith b->setvalueslen = 0; 1564b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1565b5df2d14SHong Zhang #endif 1566b5df2d14SHong Zhang 1567b5df2d14SHong Zhang /* stuff used in block assembly */ 1568b5df2d14SHong Zhang b->barray = 0; 1569b5df2d14SHong Zhang 1570b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1571b5df2d14SHong Zhang b->lvec = 0; 1572b5df2d14SHong Zhang b->Mvctx = 0; 157340781036SHong Zhang b->slvec0 = 0; 157440781036SHong Zhang b->slvec0b = 0; 157540781036SHong Zhang b->slvec1 = 0; 157640781036SHong Zhang b->slvec1a = 0; 157740781036SHong Zhang b->slvec1b = 0; 157840781036SHong Zhang b->sMvctx = 0; 1579b5df2d14SHong Zhang 1580b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1581b5df2d14SHong Zhang b->rowindices = 0; 1582b5df2d14SHong Zhang b->rowvalues = 0; 1583b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1584b5df2d14SHong Zhang 1585b5df2d14SHong Zhang /* hash table stuff */ 1586b5df2d14SHong Zhang b->ht = 0; 1587b5df2d14SHong Zhang b->hd = 0; 1588b5df2d14SHong Zhang b->ht_size = 0; 1589b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1590b5df2d14SHong Zhang b->ht_fact = 0; 1591b5df2d14SHong Zhang b->ht_total_ct = 0; 1592b5df2d14SHong Zhang b->ht_insert_ct = 0; 1593b5df2d14SHong Zhang 1594e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1595b5df2d14SHong Zhang if (flg) { 1596f6275e2eSBarry Smith PetscReal fact = 1.39; 1597b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1598e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1599b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1600b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 160163ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr); 1602b5df2d14SHong Zhang } 1603b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1604b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1605b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1606b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1607b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1608b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1609b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1610b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1611b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1612a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1613a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1614a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 161523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 161623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 161723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 161823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1619b5df2d14SHong Zhang PetscFunctionReturn(0); 1620b5df2d14SHong Zhang } 1621273d9f13SBarry Smith EXTERN_C_END 1622b5df2d14SHong Zhang 1623209238afSKris Buschelman /*MC 1624002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1625209238afSKris Buschelman 1626209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1627209238afSKris Buschelman and MATMPISBAIJ otherwise. 1628209238afSKris Buschelman 1629209238afSKris Buschelman Options Database Keys: 1630209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1631209238afSKris Buschelman 1632209238afSKris Buschelman Level: beginner 1633209238afSKris Buschelman 1634209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1635209238afSKris Buschelman M*/ 1636209238afSKris Buschelman 1637209238afSKris Buschelman EXTERN_C_BEGIN 1638209238afSKris Buschelman #undef __FUNCT__ 1639209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1640be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1641dfbe8321SBarry Smith { 16426849ba73SBarry Smith PetscErrorCode ierr; 16431302d50aSBarry Smith PetscMPIInt size; 1644209238afSKris Buschelman 1645209238afSKris Buschelman PetscFunctionBegin; 1646209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1647209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1648209238afSKris Buschelman if (size == 1) { 1649209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1650209238afSKris Buschelman } else { 1651209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1652209238afSKris Buschelman } 1653209238afSKris Buschelman PetscFunctionReturn(0); 1654209238afSKris Buschelman } 1655209238afSKris Buschelman EXTERN_C_END 1656209238afSKris Buschelman 16574a2ae208SSatish Balay #undef __FUNCT__ 16584a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1659b5df2d14SHong Zhang /*@C 1660b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1661b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1662b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1663b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1664b5df2d14SHong Zhang 1665b5df2d14SHong Zhang Collective on Mat 1666b5df2d14SHong Zhang 1667b5df2d14SHong Zhang Input Parameters: 1668b5df2d14SHong Zhang + A - the matrix 1669b5df2d14SHong Zhang . bs - size of blockk 1670b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1671b5df2d14SHong Zhang submatrix (same for all local rows) 1672b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 16736d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 16746d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 16756d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1676b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1677b5df2d14SHong Zhang submatrix (same for all local rows). 1678b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1679b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1680b5df2d14SHong Zhang each block row) or PETSC_NULL. 1681b5df2d14SHong Zhang 1682b5df2d14SHong Zhang 1683b5df2d14SHong Zhang Options Database Keys: 1684b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1685b5df2d14SHong Zhang block calculations (much slower) 1686b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1687b5df2d14SHong Zhang 1688b5df2d14SHong Zhang Notes: 1689b5df2d14SHong Zhang 1690b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1691b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1692b5df2d14SHong Zhang 169349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 169449a6f317SBarry Smith 1695b5df2d14SHong Zhang Storage Information: 1696b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1697b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1698b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1699b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1700b5df2d14SHong Zhang 1701b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1702b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1703b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1704b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1705b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1706b5df2d14SHong Zhang 1707b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1708b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang .vb 1711b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1712b5df2d14SHong Zhang ------------------- 1713b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1714b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1715b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1716b5df2d14SHong Zhang ------------------- 1717b5df2d14SHong Zhang .ve 1718b5df2d14SHong Zhang 1719b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1720b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17216d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17226d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1723b5df2d14SHong Zhang 17246d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17256d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1726b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1727b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1728b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1729b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1730b5df2d14SHong Zhang matrices. 1731b5df2d14SHong Zhang 1732b5df2d14SHong Zhang Level: intermediate 1733b5df2d14SHong Zhang 1734b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1735b5df2d14SHong Zhang 1736b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1737b5df2d14SHong Zhang @*/ 1738be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1739b5df2d14SHong Zhang { 17401302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1741b5df2d14SHong Zhang 1742b5df2d14SHong Zhang PetscFunctionBegin; 1743a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1744a23d5eceSKris Buschelman if (f) { 1745a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1746b5df2d14SHong Zhang } 1747b5df2d14SHong Zhang PetscFunctionReturn(0); 1748b5df2d14SHong Zhang } 1749b5df2d14SHong Zhang 17504a2ae208SSatish Balay #undef __FUNCT__ 17514a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1752a30f8f8cSSatish Balay /*@C 1753a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1754a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1755a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1756a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1757a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1758a30f8f8cSSatish Balay 1759a30f8f8cSSatish Balay Collective on MPI_Comm 1760a30f8f8cSSatish Balay 1761a30f8f8cSSatish Balay Input Parameters: 1762a30f8f8cSSatish Balay + comm - MPI communicator 1763a30f8f8cSSatish Balay . bs - size of blockk 1764a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1765a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1766a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1767a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1768a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1769a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1770a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1771a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1772a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1773a30f8f8cSSatish Balay submatrix (same for all local rows) 1774a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 17756d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 17766d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 17776d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1778a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1779a30f8f8cSSatish Balay submatrix (same for all local rows). 1780a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1781a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1782a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1783a30f8f8cSSatish Balay 1784a30f8f8cSSatish Balay Output Parameter: 1785a30f8f8cSSatish Balay . A - the matrix 1786a30f8f8cSSatish Balay 1787a30f8f8cSSatish Balay Options Database Keys: 1788a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1789a30f8f8cSSatish Balay block calculations (much slower) 1790a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1791a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1792a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1793a30f8f8cSSatish Balay 1794a30f8f8cSSatish Balay Notes: 1795d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1796d1be2dadSMatthew Knepley 1797a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1798a30f8f8cSSatish Balay (possibly both). 1799a30f8f8cSSatish Balay 1800a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1801a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1802a30f8f8cSSatish Balay 180349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 180449a6f317SBarry Smith 1805a30f8f8cSSatish Balay Storage Information: 1806a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1807a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1808a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1809a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1810a30f8f8cSSatish Balay 1811a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1812a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1813a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1814a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1815a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1816a30f8f8cSSatish Balay 1817a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1818a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1819a30f8f8cSSatish Balay 1820a30f8f8cSSatish Balay .vb 1821a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1822a30f8f8cSSatish Balay ------------------- 1823a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1824a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1825a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1826a30f8f8cSSatish Balay ------------------- 1827a30f8f8cSSatish Balay .ve 1828a30f8f8cSSatish Balay 1829a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1830a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 18316d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18326d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1833a30f8f8cSSatish Balay 18346d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18356d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1836a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1837a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1838a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1839a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1840a30f8f8cSSatish Balay matrices. 1841a30f8f8cSSatish Balay 1842a30f8f8cSSatish Balay Level: intermediate 1843a30f8f8cSSatish Balay 1844a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1845a30f8f8cSSatish Balay 1846a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1847a30f8f8cSSatish Balay @*/ 1848a30f8f8cSSatish Balay 1849be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1850a30f8f8cSSatish Balay { 18516849ba73SBarry Smith PetscErrorCode ierr; 18521302d50aSBarry Smith PetscMPIInt size; 1853a30f8f8cSSatish Balay 1854a30f8f8cSSatish Balay PetscFunctionBegin; 1855f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1856f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1857273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1858273d9f13SBarry Smith if (size > 1) { 1859b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1860b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1861273d9f13SBarry Smith } else { 1862273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1863273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1864273d9f13SBarry Smith } 1865a30f8f8cSSatish Balay PetscFunctionReturn(0); 1866a30f8f8cSSatish Balay } 1867a30f8f8cSSatish Balay 1868a30f8f8cSSatish Balay 18694a2ae208SSatish Balay #undef __FUNCT__ 18704a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 18716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1872a30f8f8cSSatish Balay { 1873a30f8f8cSSatish Balay Mat mat; 1874a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1875dfbe8321SBarry Smith PetscErrorCode ierr; 1876521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 1877387bc808SHong Zhang PetscScalar *array; 1878a30f8f8cSSatish Balay 1879a30f8f8cSSatish Balay PetscFunctionBegin; 1880a30f8f8cSSatish Balay *newmat = 0; 1881f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 1882f69a0ea3SMatthew Knepley ierr = MatSetSizes(mat,matin->m,matin->n,matin->M,matin->N);CHKERRQ(ierr); 1883be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 18841d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1885e1b6402fSHong Zhang 188682327fa8SHong Zhang mat->factor = matin->factor; 1887273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 188882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 18897fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 18907fff6886SHong Zhang 1891b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1892521d7252SBarry Smith mat->bs = matin->bs; 1893a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1894a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1895a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1896a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1897a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1898a30f8f8cSSatish Balay 1899a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1900a30f8f8cSSatish Balay a->rend = oldmat->rend; 1901a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1902a30f8f8cSSatish Balay a->cend = oldmat->cend; 1903a30f8f8cSSatish Balay a->size = oldmat->size; 1904a30f8f8cSSatish Balay a->rank = oldmat->rank; 1905a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1906a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1907a30f8f8cSSatish Balay a->rowindices = 0; 1908a30f8f8cSSatish Balay a->rowvalues = 0; 1909a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1910a30f8f8cSSatish Balay a->barray = 0; 1911a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1912a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1913a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1914a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1915a30f8f8cSSatish Balay 1916a30f8f8cSSatish Balay /* hash table stuff */ 1917a30f8f8cSSatish Balay a->ht = 0; 1918a30f8f8cSSatish Balay a->hd = 0; 1919a30f8f8cSSatish Balay a->ht_size = 0; 1920a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1921a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1922a30f8f8cSSatish Balay a->ht_total_ct = 0; 1923a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1924a30f8f8cSSatish Balay 19251302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 1926a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1927521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 1928a30f8f8cSSatish Balay if (oldmat->colmap) { 1929a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1930a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1931a30f8f8cSSatish Balay #else 19321302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 193352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 19341302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 1935a30f8f8cSSatish Balay #endif 1936a30f8f8cSSatish Balay } else a->colmap = 0; 1937387bc808SHong Zhang 1938a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 19391302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 194052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 19411302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 1942a30f8f8cSSatish Balay } else a->garray = 0; 1943a30f8f8cSSatish Balay 1944a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 194552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 1946a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 194752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 194882327fa8SHong Zhang 194982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 195052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 195182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 195252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 1953387bc808SHong Zhang 1954387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 19551ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 1956387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 1957387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 19581ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 19591ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 1960387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 19611ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 196252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 196352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 196452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 196552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 196652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 1967387bc808SHong Zhang 1968387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 1969387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 1970387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 197152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 197282327fa8SHong Zhang 1973a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 197452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1975a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 197652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 1977b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1978a30f8f8cSSatish Balay *newmat = mat; 1979a30f8f8cSSatish Balay PetscFunctionReturn(0); 1980a30f8f8cSSatish Balay } 1981a30f8f8cSSatish Balay 1982a30f8f8cSSatish Balay #include "petscsys.h" 1983a30f8f8cSSatish Balay 19844a2ae208SSatish Balay #undef __FUNCT__ 19854a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 1986f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 1987a30f8f8cSSatish Balay { 1988a30f8f8cSSatish Balay Mat A; 19896849ba73SBarry Smith PetscErrorCode ierr; 199013f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 199187828ca2SBarry Smith PetscScalar *vals,*buf; 1992a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1993a30f8f8cSSatish Balay MPI_Status status; 199413f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners; 199513f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 199613f74950SBarry Smith PetscInt *locrowlens,*procsnz = 0,jj,*mycols,*ibuf; 19971302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 19981302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 19991302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 200013f74950SBarry Smith int fd; 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay PetscFunctionBegin; 2003b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2004a30f8f8cSSatish Balay 2005a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2006a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2007a30f8f8cSSatish Balay if (!rank) { 2008b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2009a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2010552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2011a30f8f8cSSatish Balay if (header[3] < 0) { 201229bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2013a30f8f8cSSatish Balay } 2014a30f8f8cSSatish Balay } 2015a30f8f8cSSatish Balay 2016a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2017a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2018a30f8f8cSSatish Balay 201929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay /* 2022a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2023a30f8f8cSSatish Balay divisible by the blocksize 2024a30f8f8cSSatish Balay */ 2025a30f8f8cSSatish Balay Mbs = M/bs; 2026a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2027a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2028a30f8f8cSSatish Balay else Mbs++; 2029a30f8f8cSSatish Balay if (extra_rows &&!rank) { 203063ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr); 2031a30f8f8cSSatish Balay } 2032a30f8f8cSSatish Balay 2033a30f8f8cSSatish Balay /* determine ownership of all rows */ 2034a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2035a30f8f8cSSatish Balay m = mbs*bs; 2036a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2037a30f8f8cSSatish Balay browners = rowners + size + 1; 2038a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2039a30f8f8cSSatish Balay rowners[0] = 0; 2040a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2041a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2042a30f8f8cSSatish Balay rstart = rowners[rank]; 2043a30f8f8cSSatish Balay rend = rowners[rank+1]; 2044a30f8f8cSSatish Balay 2045a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 20461302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2047a30f8f8cSSatish Balay if (!rank) { 20481302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2049a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2050a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2051a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2052a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2053a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2054a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2055a30f8f8cSSatish Balay } else { 2056a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2057a30f8f8cSSatish Balay } 2058a30f8f8cSSatish Balay 20590222edb1SHong Zhang if (!rank) { /* procs[0] */ 2060a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 20611302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 20621302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2063a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2064a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2065a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2066a30f8f8cSSatish Balay } 2067a30f8f8cSSatish Balay } 2068a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2069a30f8f8cSSatish Balay 2070a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2071a30f8f8cSSatish Balay maxnz = 0; 2072a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2073a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2074a30f8f8cSSatish Balay } 20751302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2076a30f8f8cSSatish Balay 2077a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2078a30f8f8cSSatish Balay nz = procsnz[0]; 20791302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2080a30f8f8cSSatish Balay mycols = ibuf; 2081a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2082a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2083a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2084a30f8f8cSSatish Balay 2085a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2086a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2087a30f8f8cSSatish Balay nz = procsnz[i]; 2088a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2089a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2090a30f8f8cSSatish Balay } 2091a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2092a30f8f8cSSatish Balay if (size != 1) { 2093a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2094a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2095a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2096a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2097a30f8f8cSSatish Balay } 2098a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20990222edb1SHong Zhang } else { /* procs[i], i>0 */ 2100a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2101a30f8f8cSSatish Balay nz = 0; 2102a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2103a30f8f8cSSatish Balay nz += locrowlens[i]; 2104a30f8f8cSSatish Balay } 21051302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay mycols = ibuf; 2107a30f8f8cSSatish Balay /* receive message of column indices*/ 2108a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2109a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 211029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2111a30f8f8cSSatish Balay } 2112a30f8f8cSSatish Balay 2113a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 21141302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2115a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 21161302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 21171302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2118a30f8f8cSSatish Balay masked1 = mask + Mbs; 2119a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2120a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2121a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2122a30f8f8cSSatish Balay dcount = 0; 2123a30f8f8cSSatish Balay odcount = 0; 2124a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2125a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2126a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21270222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2128a30f8f8cSSatish Balay if (!mask[tmp]) { 2129a30f8f8cSSatish Balay mask[tmp] = 1; 21300222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21310222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2132a30f8f8cSSatish Balay } 2133a30f8f8cSSatish Balay } 2134a30f8f8cSSatish Balay rowcount++; 2135a30f8f8cSSatish Balay } 2136a30f8f8cSSatish Balay 21370222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21380222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2139a30f8f8cSSatish Balay 2140a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2141a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2142a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2143a30f8f8cSSatish Balay } 2144a30f8f8cSSatish Balay 2145a30f8f8cSSatish Balay /* create our matrix */ 2146f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2147f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 214822191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 214922191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2150273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay 2152a30f8f8cSSatish Balay if (!rank) { 215387828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2155a30f8f8cSSatish Balay nz = procsnz[0]; 2156a30f8f8cSSatish Balay vals = buf; 2157a30f8f8cSSatish Balay mycols = ibuf; 2158a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2159a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2161a30f8f8cSSatish Balay 2162a30f8f8cSSatish Balay /* insert into matrix */ 2163a30f8f8cSSatish Balay jj = rstart*bs; 2164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21657e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay mycols += locrowlens[i]; 2167a30f8f8cSSatish Balay vals += locrowlens[i]; 2168a30f8f8cSSatish Balay jj++; 2169a30f8f8cSSatish Balay } 21707e06b45fSHong Zhang 2171a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2172a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2173a30f8f8cSSatish Balay nz = procsnz[i]; 2174a30f8f8cSSatish Balay vals = buf; 2175a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2176a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay } 2178a30f8f8cSSatish Balay /* the last proc */ 2179a30f8f8cSSatish Balay if (size != 1){ 2180a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2181a30f8f8cSSatish Balay vals = buf; 2182a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2183a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2184a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay } 2186a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21877e06b45fSHong Zhang 2188a30f8f8cSSatish Balay } else { 2189a30f8f8cSSatish Balay /* receive numeric values */ 219087828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2191a30f8f8cSSatish Balay 2192a30f8f8cSSatish Balay /* receive message of values*/ 2193a30f8f8cSSatish Balay vals = buf; 2194a30f8f8cSSatish Balay mycols = ibuf; 2195a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 219729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2198a30f8f8cSSatish Balay 2199a30f8f8cSSatish Balay /* insert into matrix */ 2200a30f8f8cSSatish Balay jj = rstart*bs; 2201a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2202a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2203a30f8f8cSSatish Balay mycols += locrowlens[i]; 2204a30f8f8cSSatish Balay vals += locrowlens[i]; 2205a30f8f8cSSatish Balay jj++; 2206a30f8f8cSSatish Balay } 2207a30f8f8cSSatish Balay } 22087e06b45fSHong Zhang 2209a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2214a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2216a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 221722191285SKris Buschelman *newmat = A; 2218a30f8f8cSSatish Balay PetscFunctionReturn(0); 2219a30f8f8cSSatish Balay } 2220a30f8f8cSSatish Balay 22214a2ae208SSatish Balay #undef __FUNCT__ 22224a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2223dcf5cc72SBarry Smith /*XXXXX@ 2224a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2225a30f8f8cSSatish Balay 2226a30f8f8cSSatish Balay Input Parameters: 2227a30f8f8cSSatish Balay . mat - the matrix 2228a30f8f8cSSatish Balay . fact - factor 2229a30f8f8cSSatish Balay 2230a30f8f8cSSatish Balay Collective on Mat 2231a30f8f8cSSatish Balay 2232a30f8f8cSSatish Balay Level: advanced 2233a30f8f8cSSatish Balay 2234a30f8f8cSSatish Balay Notes: 2235a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2236a30f8f8cSSatish Balay 2237a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2238a30f8f8cSSatish Balay 2239a30f8f8cSSatish Balay .seealso: MatSetOption() 2240dcf5cc72SBarry Smith @XXXXX*/ 2241dcf5cc72SBarry Smith 224224d5174aSHong Zhang 22434a2ae208SSatish Balay #undef __FUNCT__ 22444a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2245dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 224624d5174aSHong Zhang { 224724d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2248f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2249ca54ac64SHong Zhang PetscReal atmp; 225087828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2251dfbe8321SBarry Smith PetscErrorCode ierr; 22521302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 22531302d50aSBarry Smith PetscMPIInt rank,size; 22541302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 225587828ca2SBarry Smith PetscScalar *va; 22568a1c53f2SBarry Smith MatScalar *ba; 2257f4c0e9e4SHong Zhang MPI_Status stat; 225824d5174aSHong Zhang 225924d5174aSHong Zhang PetscFunctionBegin; 2260d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 22611ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2262f4c0e9e4SHong Zhang 226356faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 226456faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2265f4c0e9e4SHong Zhang 2266521d7252SBarry Smith bs = A->bs; 2267f4c0e9e4SHong Zhang mbs = a->mbs; 2268f4c0e9e4SHong Zhang Mbs = a->Mbs; 2269f4c0e9e4SHong Zhang ba = b->a; 2270f4c0e9e4SHong Zhang bi = b->i; 2271f4c0e9e4SHong Zhang bj = b->j; 2272f4c0e9e4SHong Zhang 2273f4c0e9e4SHong Zhang /* find ownerships */ 2274f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2275f4c0e9e4SHong Zhang 2276f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 227782502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2278ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2279f4c0e9e4SHong Zhang 2280f4c0e9e4SHong Zhang /* row_max for B */ 2281b8475685SHong Zhang if (rank != size-1){ 2282f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2283f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2284f4c0e9e4SHong Zhang brow = bs*i; 2285f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2286f4c0e9e4SHong Zhang bcol = bs*(*bj); 2287f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2288ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 228904d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2290f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2291f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2292ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2293ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2294f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2295f4c0e9e4SHong Zhang } 2296f4c0e9e4SHong Zhang } 2297f4c0e9e4SHong Zhang bj++; 2298f4c0e9e4SHong Zhang } 2299f4c0e9e4SHong Zhang } 2300f4c0e9e4SHong Zhang 2301f4c0e9e4SHong Zhang /* send values to its owners */ 2302f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2303f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2304ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 230556faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2306ca54ac64SHong Zhang } 2307f4c0e9e4SHong Zhang } 2308f4c0e9e4SHong Zhang 2309f4c0e9e4SHong Zhang /* receive values */ 2310ca54ac64SHong Zhang if (rank){ 2311f4c0e9e4SHong Zhang rvalues = work; 2312ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2313f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 231456faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2315f4c0e9e4SHong Zhang /* process values */ 2316f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2317ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2318f4c0e9e4SHong Zhang } 2319f4c0e9e4SHong Zhang } 2320ca54ac64SHong Zhang } 2321f4c0e9e4SHong Zhang 23221ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2323ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 232424d5174aSHong Zhang PetscFunctionReturn(0); 232524d5174aSHong Zhang } 23262798e883SHong Zhang 23272798e883SHong Zhang #undef __FUNCT__ 23282798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 23291302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 23302798e883SHong Zhang { 23312798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2332dfbe8321SBarry Smith PetscErrorCode ierr; 2333521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2334ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2335ffe4fb16SHong Zhang Vec bb1; 2336ffe4fb16SHong Zhang 2337ffe4fb16SHong Zhang PetscFunctionBegin; 233877431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2339ffe4fb16SHong Zhang if (bs > 1) 2340ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2341ffe4fb16SHong Zhang 2342ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2343ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2344ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2345ffe4fb16SHong Zhang its--; 2346ffe4fb16SHong Zhang } 2347ffe4fb16SHong Zhang 2348ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2349ffe4fb16SHong Zhang while (its--){ 2350ffe4fb16SHong Zhang 2351ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2352ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2353ffe4fb16SHong Zhang 2354ffe4fb16SHong Zhang /* copy xx into slvec0a */ 23551ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 23561ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2357ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 23581ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2359ffe4fb16SHong Zhang 23602dcb1b2aSMatthew Knepley ierr = VecScale(mat->slvec0,mone);CHKERRQ(ierr); 2361ffe4fb16SHong Zhang 2362ffe4fb16SHong Zhang /* copy bb into slvec1a */ 23631ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 23641ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2365ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 23661ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2367ffe4fb16SHong Zhang 2368ffe4fb16SHong Zhang /* set slvec1b = 0 */ 23692dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2370ffe4fb16SHong Zhang 2371ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 23721ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 23731ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2374ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2375ffe4fb16SHong Zhang 2376ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2377ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2378ffe4fb16SHong Zhang 2379ffe4fb16SHong Zhang /* local diagonal sweep */ 2380ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2381ffe4fb16SHong Zhang } 2382ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2383ffe4fb16SHong Zhang } else { 2384ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2385ffe4fb16SHong Zhang } 2386ffe4fb16SHong Zhang PetscFunctionReturn(0); 2387ffe4fb16SHong Zhang } 2388ffe4fb16SHong Zhang 2389ffe4fb16SHong Zhang #undef __FUNCT__ 2390ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 23911302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2392ffe4fb16SHong Zhang { 2393ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2394dfbe8321SBarry Smith PetscErrorCode ierr; 2395d05c616dSSatish Balay PetscScalar mone=-1.0; 23962798e883SHong Zhang Vec lvec1,bb1; 23972798e883SHong Zhang 23982798e883SHong Zhang PetscFunctionBegin; 239977431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2400521d7252SBarry Smith if (matin->bs > 1) 24012798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24022798e883SHong Zhang 2403c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24042798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2405bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 24062798e883SHong Zhang its--; 24072798e883SHong Zhang } 24082798e883SHong Zhang 24092798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24102798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24112798e883SHong Zhang while (its--){ 24122798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24132798e883SHong Zhang 24142798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 24152798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 24162dcb1b2aSMatthew Knepley ierr = VecScale(lvec1,mone);CHKERRQ(ierr); 24172798e883SHong Zhang 24182798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24192798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 24202798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24212798e883SHong Zhang 24222798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 24232dcb1b2aSMatthew Knepley ierr = VecScale(mat->lvec,mone);CHKERRQ(ierr); 24242798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 24252798e883SHong Zhang 24262798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24272798e883SHong Zhang 2428c14dc6b6SHong Zhang /* diagonal sweep */ 2429bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 24302798e883SHong Zhang } 24312798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 24322798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2433c14dc6b6SHong Zhang } else { 2434c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2435c14dc6b6SHong Zhang } 24362798e883SHong Zhang PetscFunctionReturn(0); 24372798e883SHong Zhang } 24382798e883SHong Zhang 2439