xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision d24d420451aab1d024a728b511d7b61b40627436)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10*d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
11*d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*);
12*d24d4204SJose E. Roman #endif
13b147fbf3SStefano Zampini 
14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
16b147fbf3SStefano Zampini {
17b147fbf3SStefano Zampini   Mat            preallocator;
18b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
19b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
20b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
21b147fbf3SStefano Zampini   PetscErrorCode ierr;
22b147fbf3SStefano Zampini 
23b147fbf3SStefano Zampini   PetscFunctionBegin;
24b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
25b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
26b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
27b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
28b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
29b147fbf3SStefano Zampini     if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
30b147fbf3SStefano Zampini   }
31b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
32b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
39b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
40b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
41b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
42b147fbf3SStefano Zampini     PetscInt          ncols;
43b147fbf3SStefano Zampini     const PetscInt    *row;
44b147fbf3SStefano Zampini     const PetscScalar *vals;
45b147fbf3SStefano Zampini 
46b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
47b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
49b147fbf3SStefano Zampini       if (symm && symm[i]) {
50b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
51b147fbf3SStefano Zampini       }
52b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
53b147fbf3SStefano Zampini     }
54b147fbf3SStefano Zampini   }
55b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
57b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
58b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
59b147fbf3SStefano Zampini   PetscFunctionReturn(0);
60b147fbf3SStefano Zampini }
61b147fbf3SStefano Zampini 
6228d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
63b147fbf3SStefano Zampini {
64b147fbf3SStefano Zampini   Mat            B;
65b147fbf3SStefano Zampini   PetscErrorCode ierr;
66b147fbf3SStefano Zampini   PetscInt       r;
67b147fbf3SStefano Zampini 
68b147fbf3SStefano Zampini   PetscFunctionBegin;
69b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
7028d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE,isdense;
71b147fbf3SStefano Zampini     PetscInt  bs;
72b147fbf3SStefano Zampini 
73b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
77b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
78b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
79b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
8028d58a37SPierre Jolivet     ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
8128d58a37SPierre Jolivet     if (!isdense) {
82b147fbf3SStefano Zampini       ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
83b147fbf3SStefano Zampini       ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
84b147fbf3SStefano Zampini       ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
8528d58a37SPierre Jolivet     } else {
8628d58a37SPierre Jolivet       ierr = MatSetUp(B);CHKERRQ(ierr);
8728d58a37SPierre Jolivet     }
8828d58a37SPierre Jolivet   } else {
8928d58a37SPierre Jolivet     B    = *newmat;
9028d58a37SPierre Jolivet     ierr = MatZeroEntries(B);CHKERRQ(ierr);
9128d58a37SPierre Jolivet   }
92b147fbf3SStefano Zampini 
93b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
94b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
95b147fbf3SStefano Zampini     PetscInt          ncols;
96b147fbf3SStefano Zampini     const PetscInt    *row;
97b147fbf3SStefano Zampini     const PetscScalar *vals;
98b147fbf3SStefano Zampini 
99b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
100b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
101eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
102eb1ec7c1SStefano Zampini     if (A->hermitian) {
103eb1ec7c1SStefano Zampini       PetscInt i;
104eb1ec7c1SStefano Zampini       for (i = 0; i < ncols; i++) {
105eb1ec7c1SStefano Zampini         ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr);
106eb1ec7c1SStefano Zampini       }
107eb1ec7c1SStefano Zampini     } else {
108b147fbf3SStefano Zampini       ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
109eb1ec7c1SStefano Zampini     }
110eb1ec7c1SStefano Zampini #else
111eb1ec7c1SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
112eb1ec7c1SStefano Zampini #endif
113b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
114b147fbf3SStefano Zampini   }
115b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
116b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
117b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
118b147fbf3SStefano Zampini 
119b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
120b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
121b147fbf3SStefano Zampini   } else {
122b147fbf3SStefano Zampini     *newmat = B;
123b147fbf3SStefano Zampini   }
124b147fbf3SStefano Zampini   PetscFunctionReturn(0);
125b147fbf3SStefano Zampini }
126b147fbf3SStefano Zampini 
1277087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
128a30f8f8cSSatish Balay {
129f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
130dfbe8321SBarry Smith   PetscErrorCode ierr;
131a30f8f8cSSatish Balay 
132a30f8f8cSSatish Balay   PetscFunctionBegin;
133a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
134a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
135a30f8f8cSSatish Balay   PetscFunctionReturn(0);
136a30f8f8cSSatish Balay }
137a30f8f8cSSatish Balay 
1387087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
139a30f8f8cSSatish Balay {
140f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
142a30f8f8cSSatish Balay 
143a30f8f8cSSatish Balay   PetscFunctionBegin;
144a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
145a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
146a30f8f8cSSatish Balay   PetscFunctionReturn(0);
147a30f8f8cSSatish Balay }
148a30f8f8cSSatish Balay 
149d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
150a30f8f8cSSatish Balay   { \
151a30f8f8cSSatish Balay     brow = row/bs;  \
152a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
153a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
154a30f8f8cSSatish Balay     bcol = col/bs; \
155a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
156a30f8f8cSSatish Balay     low  = 0; high = nrow; \
157a30f8f8cSSatish Balay     while (high-low > 3) { \
158a30f8f8cSSatish Balay       t = (low+high)/2; \
159a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
160a30f8f8cSSatish Balay       else              low  = t; \
161a30f8f8cSSatish Balay     } \
162a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
163a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
164a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
165a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
166a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
167a30f8f8cSSatish Balay         else                    *bap  = value;  \
168a30f8f8cSSatish Balay         goto a_noinsert; \
169a30f8f8cSSatish Balay       } \
170a30f8f8cSSatish Balay     } \
171a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
172d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
173fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
174a30f8f8cSSatish Balay     N = nrow++ - 1;  \
175a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
176580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
177580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
178580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
179a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
180a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
181e56f5c9eSBarry Smith     A->nonzerostate++;\
182a30f8f8cSSatish Balay a_noinsert:; \
183a30f8f8cSSatish Balay     ailen[brow] = nrow; \
184a30f8f8cSSatish Balay   }
185e5e170daSBarry Smith 
186d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
187a30f8f8cSSatish Balay   { \
188a30f8f8cSSatish Balay     brow = row/bs;  \
189a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
190a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
191a30f8f8cSSatish Balay     bcol = col/bs; \
192a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
193a30f8f8cSSatish Balay     low  = 0; high = nrow; \
194a30f8f8cSSatish Balay     while (high-low > 3) { \
195a30f8f8cSSatish Balay       t = (low+high)/2; \
196a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
197a30f8f8cSSatish Balay       else              low  = t; \
198a30f8f8cSSatish Balay     } \
199a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
200a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
201a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
202a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
203a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
204a30f8f8cSSatish Balay         else                    *bap  = value;  \
205a30f8f8cSSatish Balay         goto b_noinsert; \
206a30f8f8cSSatish Balay       } \
207a30f8f8cSSatish Balay     } \
208a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
209d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
210fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
211a30f8f8cSSatish Balay     N = nrow++ - 1;  \
212a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
213580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
214580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
215580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \
216a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
217a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
218e56f5c9eSBarry Smith     B->nonzerostate++;\
219a30f8f8cSSatish Balay b_noinsert:; \
220a30f8f8cSSatish Balay     bilen[brow] = nrow; \
221a30f8f8cSSatish Balay   }
222a30f8f8cSSatish Balay 
223a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
224476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
225a30f8f8cSSatish Balay */
226dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
227a30f8f8cSSatish Balay {
228a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
229a30f8f8cSSatish Balay   MatScalar      value;
230ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
231dfbe8321SBarry Smith   PetscErrorCode ierr;
2321302d50aSBarry Smith   PetscInt       i,j,row,col;
233d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
234d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
235d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
236a30f8f8cSSatish Balay 
237a30f8f8cSSatish Balay   /* Some Variables required in the macro */
238a30f8f8cSSatish Balay   Mat          A     = baij->A;
239a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2401302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
241a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
242a30f8f8cSSatish Balay 
243a30f8f8cSSatish Balay   Mat         B     = baij->B;
244a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2451302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
246a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
247a30f8f8cSSatish Balay 
2481302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2491302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
250a30f8f8cSSatish Balay   MatScalar *ap,*bap;
251a30f8f8cSSatish Balay 
252a30f8f8cSSatish Balay   /* for stash */
2530298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2540298fd71SBarry Smith   MatScalar *v_loc = NULL;
255a30f8f8cSSatish Balay 
256a30f8f8cSSatish Balay   PetscFunctionBegin;
257a30f8f8cSSatish Balay   if (!baij->donotstash) {
25859ffdab8SBarry Smith     if (n > baij->n_loc) {
25959ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
26059ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
261785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
262785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
26326fbe8dcSKarl Rupp 
26459ffdab8SBarry Smith       baij->n_loc = n;
26559ffdab8SBarry Smith     }
26659ffdab8SBarry Smith     in_loc = baij->in_loc;
26759ffdab8SBarry Smith     v_loc  = baij->v_loc;
268a30f8f8cSSatish Balay   }
269a30f8f8cSSatish Balay 
270a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
271a30f8f8cSSatish Balay     if (im[i] < 0) continue;
272cf9c20a2SJed Brown     if (PetscUnlikelyDebug(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
273a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
274a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
275a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
27601b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
27701b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27801b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
27926fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
28001b2bd88SHong Zhang         }
281a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
282a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
283a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
284a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
285db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
286db4deed7SKarl Rupp           else             value = v[i+j*m];
287d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
288a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
289a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
290cf9c20a2SJed Brown         else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
291a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
292a30f8f8cSSatish Balay           if (mat->was_assembled) {
293a30f8f8cSSatish Balay             if (!baij->colmap) {
294ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
295a30f8f8cSSatish Balay             }
296a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
297a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
29871730473SSatish Balay             col  = col - 1;
299a30f8f8cSSatish Balay #else
30071730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
301a30f8f8cSSatish Balay #endif
302a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
303ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
304a30f8f8cSSatish Balay               col  =  in[j];
305a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
306a30f8f8cSSatish Balay               B    = baij->B;
307a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
308a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
309a30f8f8cSSatish Balay               ba   = b->a;
31071730473SSatish Balay             } else col += in[j]%bs;
311a30f8f8cSSatish Balay           } else col = in[j];
312db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
313db4deed7SKarl Rupp           else             value = v[i+j*m];
314d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
315a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
316a30f8f8cSSatish Balay         }
317a30f8f8cSSatish Balay       }
318a30f8f8cSSatish Balay     } else {  /* off processor entry */
3194cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
320a30f8f8cSSatish Balay       if (!baij->donotstash) {
3215080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
322a30f8f8cSSatish Balay         n_loc          = 0;
323a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
324f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
325a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
326a30f8f8cSSatish Balay           if (roworiented) {
327a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
328a30f8f8cSSatish Balay           } else {
329a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
330a30f8f8cSSatish Balay           }
331a30f8f8cSSatish Balay           n_loc++;
332a30f8f8cSSatish Balay         }
333b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
334a30f8f8cSSatish Balay       }
335a30f8f8cSSatish Balay     }
336a30f8f8cSSatish Balay   }
337a30f8f8cSSatish Balay   PetscFunctionReturn(0);
338a30f8f8cSSatish Balay }
339a30f8f8cSSatish Balay 
34036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34136bd2089SBarry Smith {
34236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
34336bd2089SBarry Smith   PetscErrorCode    ierr;
34436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
34636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
34836bd2089SBarry Smith   const PetscScalar *value     = v;
34936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35036bd2089SBarry Smith 
35136bd2089SBarry Smith   PetscFunctionBegin;
35236bd2089SBarry Smith   if (col < row) {
35336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
35436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
35536bd2089SBarry Smith   }
35636bd2089SBarry Smith   rp   = aj + ai[row];
35736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35836bd2089SBarry Smith   rmax = imax[row];
35936bd2089SBarry Smith   nrow = ailen[row];
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   low   = 0;
36236bd2089SBarry Smith   high  = nrow;
36336bd2089SBarry Smith 
36436bd2089SBarry Smith   while (high-low > 7) {
36536bd2089SBarry Smith     t = (low+high)/2;
36636bd2089SBarry Smith     if (rp[t] > col) high = t;
36736bd2089SBarry Smith     else             low  = t;
36836bd2089SBarry Smith   }
36936bd2089SBarry Smith   for (i=low; i<high; i++) {
37036bd2089SBarry Smith     if (rp[i] > col) break;
37136bd2089SBarry Smith     if (rp[i] == col) {
37236bd2089SBarry Smith       bap = ap +  bs2*i;
37336bd2089SBarry Smith       if (roworiented) {
37436bd2089SBarry Smith         if (is == ADD_VALUES) {
37536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37736bd2089SBarry Smith               bap[jj] += *value++;
37836bd2089SBarry Smith             }
37936bd2089SBarry Smith           }
38036bd2089SBarry Smith         } else {
38136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38336bd2089SBarry Smith               bap[jj] = *value++;
38436bd2089SBarry Smith             }
38536bd2089SBarry Smith           }
38636bd2089SBarry Smith         }
38736bd2089SBarry Smith       } else {
38836bd2089SBarry Smith         if (is == ADD_VALUES) {
38936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39136bd2089SBarry Smith               *bap++ += *value++;
39236bd2089SBarry Smith             }
39336bd2089SBarry Smith           }
39436bd2089SBarry Smith         } else {
39536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39736bd2089SBarry Smith               *bap++  = *value++;
39836bd2089SBarry Smith             }
39936bd2089SBarry Smith           }
40036bd2089SBarry Smith         }
40136bd2089SBarry Smith       }
40236bd2089SBarry Smith       goto noinsert2;
40336bd2089SBarry Smith     }
40436bd2089SBarry Smith   }
40536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
40736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40836bd2089SBarry Smith   N = nrow++ - 1; high++;
40936bd2089SBarry Smith   /* shift up all the later entries in this row */
410580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
411580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
41236bd2089SBarry Smith   rp[i] = col;
41336bd2089SBarry Smith   bap   = ap +  bs2*i;
41436bd2089SBarry Smith   if (roworiented) {
41536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41636bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
41736bd2089SBarry Smith         bap[jj] = *value++;
41836bd2089SBarry Smith       }
41936bd2089SBarry Smith     }
42036bd2089SBarry Smith   } else {
42136bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42236bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42336bd2089SBarry Smith         *bap++ = *value++;
42436bd2089SBarry Smith       }
42536bd2089SBarry Smith     }
42636bd2089SBarry Smith   }
42736bd2089SBarry Smith   noinsert2:;
42836bd2089SBarry Smith   ailen[row] = nrow;
42936bd2089SBarry Smith   PetscFunctionReturn(0);
43036bd2089SBarry Smith }
43136bd2089SBarry Smith 
43236bd2089SBarry Smith /*
43336bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
43436bd2089SBarry Smith */
43536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
43636bd2089SBarry Smith {
43736bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
43836bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
43936bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
44036bd2089SBarry Smith   PetscErrorCode    ierr;
44136bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
44236bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
44336bd2089SBarry Smith   const PetscScalar *value     = v;
44436bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
44536bd2089SBarry Smith 
44636bd2089SBarry Smith   PetscFunctionBegin;
44736bd2089SBarry Smith   rp   = aj + ai[row];
44836bd2089SBarry Smith   ap   = aa + bs2*ai[row];
44936bd2089SBarry Smith   rmax = imax[row];
45036bd2089SBarry Smith   nrow = ailen[row];
45136bd2089SBarry Smith   low  = 0;
45236bd2089SBarry Smith   high = nrow;
45336bd2089SBarry Smith   value = v;
45436bd2089SBarry Smith   while (high-low > 7) {
45536bd2089SBarry Smith     t = (low+high)/2;
45636bd2089SBarry Smith     if (rp[t] > col) high = t;
45736bd2089SBarry Smith     else             low  = t;
45836bd2089SBarry Smith   }
45936bd2089SBarry Smith   for (i=low; i<high; i++) {
46036bd2089SBarry Smith     if (rp[i] > col) break;
46136bd2089SBarry Smith     if (rp[i] == col) {
46236bd2089SBarry Smith       bap = ap +  bs2*i;
46336bd2089SBarry Smith       if (roworiented) {
46436bd2089SBarry Smith         if (is == ADD_VALUES) {
46536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46736bd2089SBarry Smith               bap[jj] += *value++;
46836bd2089SBarry Smith             }
46936bd2089SBarry Smith           }
47036bd2089SBarry Smith         } else {
47136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
47236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
47336bd2089SBarry Smith               bap[jj] = *value++;
47436bd2089SBarry Smith             }
47536bd2089SBarry Smith           }
47636bd2089SBarry Smith         }
47736bd2089SBarry Smith       } else {
47836bd2089SBarry Smith         if (is == ADD_VALUES) {
47936bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48136bd2089SBarry Smith               bap[jj] += value[jj];
48236bd2089SBarry Smith             }
48336bd2089SBarry Smith             bap += bs;
48436bd2089SBarry Smith           }
48536bd2089SBarry Smith         } else {
48636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48836bd2089SBarry Smith               bap[jj]  = value[jj];
48936bd2089SBarry Smith             }
49036bd2089SBarry Smith             bap += bs;
49136bd2089SBarry Smith           }
49236bd2089SBarry Smith         }
49336bd2089SBarry Smith       }
49436bd2089SBarry Smith       goto noinsert2;
49536bd2089SBarry Smith     }
49636bd2089SBarry Smith   }
49736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
49836bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
49936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
50036bd2089SBarry Smith   N = nrow++ - 1; high++;
50136bd2089SBarry Smith   /* shift up all the later entries in this row */
502580bdb30SBarry Smith   ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
503580bdb30SBarry Smith   ierr  = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
50436bd2089SBarry Smith   rp[i] = col;
50536bd2089SBarry Smith   bap   = ap +  bs2*i;
50636bd2089SBarry Smith   if (roworiented) {
50736bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50836bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
50936bd2089SBarry Smith         bap[jj] = *value++;
51036bd2089SBarry Smith       }
51136bd2089SBarry Smith     }
51236bd2089SBarry Smith   } else {
51336bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
51436bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
51536bd2089SBarry Smith         *bap++ = *value++;
51636bd2089SBarry Smith       }
51736bd2089SBarry Smith     }
51836bd2089SBarry Smith   }
51936bd2089SBarry Smith   noinsert2:;
52036bd2089SBarry Smith   ailen[row] = nrow;
52136bd2089SBarry Smith   PetscFunctionReturn(0);
52236bd2089SBarry Smith }
52336bd2089SBarry Smith 
52436bd2089SBarry Smith /*
52536bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
52636bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
52736bd2089SBarry Smith */
528dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
529a30f8f8cSSatish Balay {
5300880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
531f15d580aSBarry Smith   const MatScalar *value;
532f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
533ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
534dfbe8321SBarry Smith   PetscErrorCode  ierr;
535899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
536476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
537476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5380880e062SHong Zhang 
539a30f8f8cSSatish Balay   PetscFunctionBegin;
5400880e062SHong Zhang   if (!barray) {
541785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5420880e062SHong Zhang     baij->barray = barray;
5430880e062SHong Zhang   }
5440880e062SHong Zhang 
5450880e062SHong Zhang   if (roworiented) {
5460880e062SHong Zhang     stepval = (n-1)*bs;
5470880e062SHong Zhang   } else {
5480880e062SHong Zhang     stepval = (m-1)*bs;
5490880e062SHong Zhang   }
5500880e062SHong Zhang   for (i=0; i<m; i++) {
5510880e062SHong Zhang     if (im[i] < 0) continue;
552cf9c20a2SJed Brown     if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
5530880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5540880e062SHong Zhang       row = im[i] - rstart;
5550880e062SHong Zhang       for (j=0; j<n; j++) {
556f3f98c53SJed Brown         if (im[i] > in[j]) {
557f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
558e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
559f3f98c53SJed Brown         }
5600880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5610880e062SHong Zhang         if ((roworiented) && (n == 1)) {
562f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5630880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
564f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5650880e062SHong Zhang         } else { /* Here a copy is required */
5660880e062SHong Zhang           if (roworiented) {
5670880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5680880e062SHong Zhang           } else {
5690880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5700880e062SHong Zhang           }
5710880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5720880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5730880e062SHong Zhang               *barray++ = *value++;
5740880e062SHong Zhang             }
5750880e062SHong Zhang           }
5760880e062SHong Zhang           barray -=bs2;
5770880e062SHong Zhang         }
5780880e062SHong Zhang 
5790880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5800880e062SHong Zhang           col  = in[j] - cstart;
58136bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
58226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
583cf9c20a2SJed Brown         else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5840880e062SHong Zhang         else {
5850880e062SHong Zhang           if (mat->was_assembled) {
5860880e062SHong Zhang             if (!baij->colmap) {
587ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5880880e062SHong Zhang             }
5890880e062SHong Zhang 
5902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5910880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5921302d50aSBarry Smith             { PetscInt data;
5930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
594e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5950880e062SHong Zhang             }
5960880e062SHong Zhang #else
597e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5980880e062SHong Zhang #endif
5990880e062SHong Zhang #endif
6000880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
6010880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
6020880e062SHong Zhang             col  = (col - 1)/bs;
6030880e062SHong Zhang #else
6040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
6050880e062SHong Zhang #endif
6060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
607ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
6080880e062SHong Zhang               col  = in[j];
6090880e062SHong Zhang             }
61026fbe8dcSKarl Rupp           } else col = in[j];
61136bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
6120880e062SHong Zhang         }
6130880e062SHong Zhang       }
6140880e062SHong Zhang     } else {
615bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6160880e062SHong Zhang       if (!baij->donotstash) {
6170880e062SHong Zhang         if (roworiented) {
6180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6190880e062SHong Zhang         } else {
6200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6210880e062SHong Zhang         }
6220880e062SHong Zhang       }
6230880e062SHong Zhang     }
6240880e062SHong Zhang   }
6250880e062SHong Zhang   PetscFunctionReturn(0);
626a30f8f8cSSatish Balay }
627a30f8f8cSSatish Balay 
6281302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
629a30f8f8cSSatish Balay {
630f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6316849ba73SBarry Smith   PetscErrorCode ierr;
632d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
633d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay   PetscFunctionBegin;
636a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
637e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
638e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
639a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
640a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
641a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
642e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
643e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
644a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
645a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
646c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647a30f8f8cSSatish Balay         } else {
648a30f8f8cSSatish Balay           if (!baij->colmap) {
649ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
650a30f8f8cSSatish Balay           }
651a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
652a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
653a30f8f8cSSatish Balay           data--;
654a30f8f8cSSatish Balay #else
655a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
656a30f8f8cSSatish Balay #endif
657a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
658a30f8f8cSSatish Balay           else {
659a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
660e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
661a30f8f8cSSatish Balay           }
662a30f8f8cSSatish Balay         }
663a30f8f8cSSatish Balay       }
664f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
665a30f8f8cSSatish Balay   }
666a30f8f8cSSatish Balay   PetscFunctionReturn(0);
667a30f8f8cSSatish Balay }
668a30f8f8cSSatish Balay 
669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
670a30f8f8cSSatish Balay {
671a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
672dfbe8321SBarry Smith   PetscErrorCode ierr;
673a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay   PetscFunctionBegin;
676a30f8f8cSSatish Balay   if (baij->size == 1) {
677a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
678a30f8f8cSSatish Balay   } else {
679a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
680785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
681a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
682a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
683a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
684a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
685b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6868f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
687a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6880b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6890b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6900b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6910b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
692899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
693d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6940b8dc8d2SHong Zhang       MatScalar    *v;
6950b8dc8d2SHong Zhang 
696dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
697580bdb30SBarry Smith       ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr);
6980b8dc8d2SHong Zhang       /* Amat */
6990b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
7000b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7010b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7020b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
7030b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7040b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
7050b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7060b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7070b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7080b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7090b8dc8d2SHong Zhang               /* non-diagonal block */
7100b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7110b8dc8d2SHong Zhang             }
7120b8dc8d2SHong Zhang           }
7130b8dc8d2SHong Zhang         }
71451f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7150b8dc8d2SHong Zhang       }
7160b8dc8d2SHong Zhang       /* Bmat */
7170b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7180b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7190b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7200b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7210b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7220b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7230b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7240b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7250b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7260b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7270b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7280b8dc8d2SHong Zhang             }
7290b8dc8d2SHong Zhang           }
7300b8dc8d2SHong Zhang         }
73151f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7320b8dc8d2SHong Zhang       }
733b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7340b8dc8d2SHong Zhang       *norm = 0.0;
735d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7360b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7370b8dc8d2SHong Zhang       }
73874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
739f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
740a30f8f8cSSatish Balay   }
741a30f8f8cSSatish Balay   PetscFunctionReturn(0);
742a30f8f8cSSatish Balay }
743a30f8f8cSSatish Balay 
744dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
745a30f8f8cSSatish Balay {
746a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
747dfbe8321SBarry Smith   PetscErrorCode ierr;
7481302d50aSBarry Smith   PetscInt       nstash,reallocs;
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   PetscFunctionBegin;
75126fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
752a30f8f8cSSatish Balay 
753d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7541e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7561e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7581e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
759a30f8f8cSSatish Balay   PetscFunctionReturn(0);
760a30f8f8cSSatish Balay }
761a30f8f8cSSatish Balay 
762dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
763a30f8f8cSSatish Balay {
764a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
765a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7666849ba73SBarry Smith   PetscErrorCode ierr;
76713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
768e44c0bd4SBarry Smith   PetscInt       *row,*col;
769ace3abfcSBarry Smith   PetscBool      other_disassembled;
77013f74950SBarry Smith   PetscMPIInt    n;
771ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
772a30f8f8cSSatish Balay   MatScalar      *val;
773a30f8f8cSSatish Balay 
77491c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
775a30f8f8cSSatish Balay   PetscFunctionBegin;
7764cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
777a30f8f8cSSatish Balay     while (1) {
778a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
779a30f8f8cSSatish Balay       if (!flg) break;
780a30f8f8cSSatish Balay 
781a30f8f8cSSatish Balay       for (i=0; i<n;) {
782a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
78326fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
78426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
78526fbe8dcSKarl Rupp         }
786a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
787a30f8f8cSSatish Balay         else       ncols = n-i;
788a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7894b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
790a30f8f8cSSatish Balay         i    = j;
791a30f8f8cSSatish Balay       }
792a30f8f8cSSatish Balay     }
793a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
794a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
795a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
796a30f8f8cSSatish Balay        restore the original flags */
797a30f8f8cSSatish Balay     r1 = baij->roworiented;
798a30f8f8cSSatish Balay     r2 = a->roworiented;
79991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
80026fbe8dcSKarl Rupp 
801a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
802a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
80326fbe8dcSKarl Rupp 
80491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
805a30f8f8cSSatish Balay     while (1) {
806a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
807a30f8f8cSSatish Balay       if (!flg) break;
808a30f8f8cSSatish Balay 
809a30f8f8cSSatish Balay       for (i=0; i<n;) {
810a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
81126fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
81226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
81326fbe8dcSKarl Rupp         }
814a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
815a30f8f8cSSatish Balay         else       ncols = n-i;
8164b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
817a30f8f8cSSatish Balay         i    = j;
818a30f8f8cSSatish Balay       }
819a30f8f8cSSatish Balay     }
820a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
82126fbe8dcSKarl Rupp 
822a30f8f8cSSatish Balay     baij->roworiented = r1;
823a30f8f8cSSatish Balay     a->roworiented    = r2;
82426fbe8dcSKarl Rupp 
82591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
826a30f8f8cSSatish Balay   }
827a30f8f8cSSatish Balay 
828a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
829a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
832a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
833a30f8f8cSSatish Balay   /*
834a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
835a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
836a30f8f8cSSatish Balay   */
837a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
838b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
839a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
840ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
841a30f8f8cSSatish Balay     }
842a30f8f8cSSatish Balay   }
843a30f8f8cSSatish Balay 
844a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
84540781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
846a30f8f8cSSatish Balay   }
847a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
848a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
849a30f8f8cSSatish Balay 
85074ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
85126fbe8dcSKarl Rupp 
852a30f8f8cSSatish Balay   baij->rowvalues = 0;
8534f9cfa9eSBarry Smith 
8544f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8554f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
856e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
857b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
858e56f5c9eSBarry Smith   }
859a30f8f8cSSatish Balay   PetscFunctionReturn(0);
860a30f8f8cSSatish Balay }
861a30f8f8cSSatish Balay 
862dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8639804daf3SBarry Smith #include <petscdraw.h>
8646849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
865a30f8f8cSSatish Balay {
866a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
867dfbe8321SBarry Smith   PetscErrorCode    ierr;
868d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8697da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
870ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
871b0a32e0cSBarry Smith   PetscViewer       sviewer;
872f3ef73ceSBarry Smith   PetscViewerFormat format;
873a30f8f8cSSatish Balay 
874a30f8f8cSSatish Balay   PetscFunctionBegin;
875251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
876251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
87732077d6dSBarry Smith   if (iascii) {
878b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
879456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
880a30f8f8cSSatish Balay       MatInfo info;
881ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
882a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8831575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
884b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
885a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
886e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
887a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
888e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
889b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8901575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
89107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
892a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
893a30f8f8cSSatish Balay       PetscFunctionReturn(0);
894fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
89577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
896a30f8f8cSSatish Balay       PetscFunctionReturn(0);
897c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
898c1490034SHong Zhang       PetscFunctionReturn(0);
899a30f8f8cSSatish Balay     }
900a30f8f8cSSatish Balay   }
901a30f8f8cSSatish Balay 
902a30f8f8cSSatish Balay   if (isdraw) {
903b0a32e0cSBarry Smith     PetscDraw draw;
904ace3abfcSBarry Smith     PetscBool isnull;
905b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
90645f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
90745f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
908a30f8f8cSSatish Balay   }
909a30f8f8cSSatish Balay 
9107da1fb6eSBarry Smith   {
911a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
912a30f8f8cSSatish Balay     Mat          A;
91365d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
91465d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
915d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
916a30f8f8cSSatish Balay     MatScalar    *a;
9173e219373SBarry Smith     const char   *matname;
918a30f8f8cSSatish Balay 
919f204ca49SKris Buschelman     /* Should this be the same type as mat? */
920ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
921a30f8f8cSSatish Balay     if (!rank) {
922f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
923a30f8f8cSSatish Balay     } else {
924f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
925a30f8f8cSSatish Balay     }
926f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9270298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9282b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9293bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
930a30f8f8cSSatish Balay 
931a30f8f8cSSatish Balay     /* copy over the A part */
93265d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
933a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
934785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
937e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
93826fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
939a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
940e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
941a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
942dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
94326fbe8dcSKarl Rupp           col++;
94426fbe8dcSKarl Rupp           a += bs;
945a30f8f8cSSatish Balay         }
946a30f8f8cSSatish Balay       }
947a30f8f8cSSatish Balay     }
948a30f8f8cSSatish Balay     /* copy over the B part */
94965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
95065d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
951a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
952e9f7bc9eSHong Zhang 
953e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
95426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
955a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
956a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
957a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
958799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
95926fbe8dcSKarl Rupp           col++;
96026fbe8dcSKarl Rupp           a += bs;
961a30f8f8cSSatish Balay         }
962a30f8f8cSSatish Balay       }
963a30f8f8cSSatish Balay     }
964a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
965a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
966a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
967a30f8f8cSSatish Balay     /*
968a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
969b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
970a30f8f8cSSatish Balay     */
9713f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
972ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9733e219373SBarry Smith     if (!rank) {
974ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
975383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
976a30f8f8cSSatish Balay     }
9773f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9781575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9796bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
980a30f8f8cSSatish Balay   }
981a30f8f8cSSatish Balay   PetscFunctionReturn(0);
982a30f8f8cSSatish Balay }
983a30f8f8cSSatish Balay 
984618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
985618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
986d1654148SHong Zhang 
987dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
988a30f8f8cSSatish Balay {
989dfbe8321SBarry Smith   PetscErrorCode ierr;
990ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
991a30f8f8cSSatish Balay 
992a30f8f8cSSatish Balay   PetscFunctionBegin;
993251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
994251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
995251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
996251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
997d1654148SHong Zhang   if (iascii || isdraw || issocket) {
998a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
999d1654148SHong Zhang   } else if (isbinary) {
1000d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1001a30f8f8cSSatish Balay   }
1002a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1003a30f8f8cSSatish Balay }
1004a30f8f8cSSatish Balay 
1005dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1006a30f8f8cSSatish Balay {
1007a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1008dfbe8321SBarry Smith   PetscErrorCode ierr;
1009a30f8f8cSSatish Balay 
1010a30f8f8cSSatish Balay   PetscFunctionBegin;
1011a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1012d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1013a30f8f8cSSatish Balay #endif
1014a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1015a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
10166bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
10176bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1018a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
10196bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1020a30f8f8cSSatish Balay #else
102105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1022a30f8f8cSSatish Balay #endif
102305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
10246bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
10256bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
10266bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
10276bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
10286bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
10296bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
10306bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
10316bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
10325755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
103305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
103405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
10356bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
10366bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
10376bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1038ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
103905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1040a30f8f8cSSatish Balay #endif
104159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
104259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1043899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1044bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1045901853e0SKris Buschelman 
1046dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1047bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1048bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1049bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1050d2c30c80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
10516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
10526214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
10536214f412SHong Zhang #endif
1054*d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
1055*d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL);CHKERRQ(ierr);
1056*d24d4204SJose E. Roman #endif
1057b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1058b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1059a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1060a30f8f8cSSatish Balay }
1061a30f8f8cSSatish Balay 
1062547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1063547795f9SHong Zhang {
1064547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1065547795f9SHong Zhang   PetscErrorCode    ierr;
1066eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
10676de40e93SBarry Smith   PetscScalar       *from;
10686de40e93SBarry Smith   const PetscScalar *x;
1069547795f9SHong Zhang 
1070547795f9SHong Zhang   PetscFunctionBegin;
1071547795f9SHong Zhang   /* diagonal part */
1072547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1073547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1074547795f9SHong Zhang 
1075547795f9SHong Zhang   /* subdiagonal part */
1076547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1077547795f9SHong Zhang 
1078547795f9SHong Zhang   /* copy x into the vec slvec0 */
1079547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10806de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1081547795f9SHong Zhang 
1082580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1083547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
10846de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1085547795f9SHong Zhang 
1086547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1087547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1088547795f9SHong Zhang   /* supperdiagonal part */
1089547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1090547795f9SHong Zhang   PetscFunctionReturn(0);
1091547795f9SHong Zhang }
1092547795f9SHong Zhang 
1093dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1094a9d4b620SHong Zhang {
1095a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1096dfbe8321SBarry Smith   PetscErrorCode    ierr;
1097eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1098d9ca1df4SBarry Smith   PetscScalar       *from;
1099d9ca1df4SBarry Smith   const PetscScalar *x;
1100a9d4b620SHong Zhang 
1101a9d4b620SHong Zhang   PetscFunctionBegin;
1102a9d4b620SHong Zhang   /* diagonal part */
1103a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1104fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1105a9d4b620SHong Zhang 
1106a9d4b620SHong Zhang   /* subdiagonal part */
1107a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1108fc165ae2SBarry Smith 
1109a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11101ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1111d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1112a9d4b620SHong Zhang 
1113580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1114fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1115d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1116fc165ae2SBarry Smith 
1117fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1118ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1119a9d4b620SHong Zhang   /* supperdiagonal part */
1120a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1121a9d4b620SHong Zhang   PetscFunctionReturn(0);
1122a9d4b620SHong Zhang }
1123a9d4b620SHong Zhang 
1124dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1125a30f8f8cSSatish Balay {
1126a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1127dfbe8321SBarry Smith   PetscErrorCode ierr;
11281302d50aSBarry Smith   PetscInt       nt;
1129a30f8f8cSSatish Balay 
1130a30f8f8cSSatish Balay   PetscFunctionBegin;
1131a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1132e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1133e7e72b3dSBarry Smith 
1134a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1135e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
113665d70643SHong Zhang 
1137ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1138b941877fSHong Zhang   /* do diagonal part */
1139b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1140b941877fSHong Zhang   /* do supperdiagonal part */
1141ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1142b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1143b941877fSHong Zhang   /* do subdiagonal part */
1144b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1145ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1146ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1147a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1148a30f8f8cSSatish Balay }
1149a30f8f8cSSatish Balay 
1150eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz)
1151eb1ec7c1SStefano Zampini {
1152eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1153eb1ec7c1SStefano Zampini   PetscErrorCode    ierr;
1154eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1155eb1ec7c1SStefano Zampini   PetscScalar       *from,zero=0.0;
1156eb1ec7c1SStefano Zampini   const PetscScalar *x;
1157eb1ec7c1SStefano Zampini 
1158eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1159eb1ec7c1SStefano Zampini   /* diagonal part */
1160eb1ec7c1SStefano Zampini   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1161eb1ec7c1SStefano Zampini   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1162eb1ec7c1SStefano Zampini 
1163eb1ec7c1SStefano Zampini   /* subdiagonal part */
1164eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1165eb1ec7c1SStefano Zampini 
1166eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
1167eb1ec7c1SStefano Zampini   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1168eb1ec7c1SStefano Zampini   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1169eb1ec7c1SStefano Zampini   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1170eb1ec7c1SStefano Zampini   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1171eb1ec7c1SStefano Zampini 
1172eb1ec7c1SStefano Zampini   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1173eb1ec7c1SStefano Zampini   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1174eb1ec7c1SStefano Zampini   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1175eb1ec7c1SStefano Zampini 
1176eb1ec7c1SStefano Zampini   /* supperdiagonal part */
1177eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1178eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1179eb1ec7c1SStefano Zampini }
1180eb1ec7c1SStefano Zampini 
1181dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1182a30f8f8cSSatish Balay {
1183de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1184dfbe8321SBarry Smith   PetscErrorCode    ierr;
1185d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1186d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1187d9ca1df4SBarry Smith   const PetscScalar *x;
1188a9d4b620SHong Zhang 
1189a9d4b620SHong Zhang   PetscFunctionBegin;
1190a9d4b620SHong Zhang   /* diagonal part */
1191a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11922dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1193a9d4b620SHong Zhang 
1194a9d4b620SHong Zhang   /* subdiagonal part */
1195a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1196a9d4b620SHong Zhang 
1197a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11981ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1199d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1200580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
12011ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1202a9d4b620SHong Zhang 
1203ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1204d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1205ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1206a9d4b620SHong Zhang 
1207a9d4b620SHong Zhang   /* supperdiagonal part */
1208a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1209a9d4b620SHong Zhang   PetscFunctionReturn(0);
1210a9d4b620SHong Zhang }
1211a9d4b620SHong Zhang 
1212dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1213a9d4b620SHong Zhang {
1214a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1215dfbe8321SBarry Smith   PetscErrorCode ierr;
1216a30f8f8cSSatish Balay 
1217a30f8f8cSSatish Balay   PetscFunctionBegin;
1218ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1219b941877fSHong Zhang   /* do diagonal part */
1220b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1221b941877fSHong Zhang   /* do supperdiagonal part */
1222ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1223de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1224de8b6608SHong Zhang 
1225b941877fSHong Zhang   /* do subdiagonal part */
1226a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1227ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1228ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1229a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1230a30f8f8cSSatish Balay }
1231a30f8f8cSSatish Balay 
1232a30f8f8cSSatish Balay /*
1233a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1234a30f8f8cSSatish Balay    diagonal block
1235a30f8f8cSSatish Balay */
1236dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1237a30f8f8cSSatish Balay {
1238a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1239dfbe8321SBarry Smith   PetscErrorCode ierr;
1240a30f8f8cSSatish Balay 
1241a30f8f8cSSatish Balay   PetscFunctionBegin;
1242e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1243a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1244a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1245a30f8f8cSSatish Balay }
1246a30f8f8cSSatish Balay 
1247f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1248a30f8f8cSSatish Balay {
1249a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1250dfbe8321SBarry Smith   PetscErrorCode ierr;
1251a30f8f8cSSatish Balay 
1252a30f8f8cSSatish Balay   PetscFunctionBegin;
1253f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1254f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1255a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1256a30f8f8cSSatish Balay }
1257a30f8f8cSSatish Balay 
12581302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1259a30f8f8cSSatish Balay {
1260d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1261d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1262d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1263d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1264d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1265899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1266d0d4cfc2SHong Zhang 
1267a30f8f8cSSatish Balay   PetscFunctionBegin;
1268e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1269d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1270d0d4cfc2SHong Zhang 
1271d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1272d0d4cfc2SHong Zhang     /*
1273d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1274d0d4cfc2SHong Zhang     */
1275d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1276d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1277d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1278d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1279d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
128026fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1281d0d4cfc2SHong Zhang     }
1282dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1283d0d4cfc2SHong Zhang   }
1284d0d4cfc2SHong Zhang 
1285e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1286d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1287d0d4cfc2SHong Zhang 
1288d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1289d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1290d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1291d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1292d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1293d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1294d0d4cfc2SHong Zhang 
1295d0d4cfc2SHong Zhang   cmap = mat->garray;
1296d0d4cfc2SHong Zhang   if (v  || idx) {
1297d0d4cfc2SHong Zhang     if (nztot) {
1298d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1299d0d4cfc2SHong Zhang       PetscInt imark = -1;
1300d0d4cfc2SHong Zhang       if (v) {
1301d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1302d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1303d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1304d0d4cfc2SHong Zhang           else break;
1305d0d4cfc2SHong Zhang         }
1306d0d4cfc2SHong Zhang         imark = i;
1307d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1308d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1309d0d4cfc2SHong Zhang       }
1310d0d4cfc2SHong Zhang       if (idx) {
1311d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1312d0d4cfc2SHong Zhang         if (imark > -1) {
1313d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1314d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1315d0d4cfc2SHong Zhang           }
1316d0d4cfc2SHong Zhang         } else {
1317d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
131826fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1319d0d4cfc2SHong Zhang             else break;
1320d0d4cfc2SHong Zhang           }
1321d0d4cfc2SHong Zhang           imark = i;
1322d0d4cfc2SHong Zhang         }
1323d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1324d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1325d0d4cfc2SHong Zhang       }
1326d0d4cfc2SHong Zhang     } else {
1327d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1328d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1329d0d4cfc2SHong Zhang     }
1330d0d4cfc2SHong Zhang   }
1331d0d4cfc2SHong Zhang   *nz  = nztot;
1332d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1333d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1334a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1335a30f8f8cSSatish Balay }
1336a30f8f8cSSatish Balay 
13371302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1338a30f8f8cSSatish Balay {
1339a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1340a30f8f8cSSatish Balay 
1341a30f8f8cSSatish Balay   PetscFunctionBegin;
1342e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1343a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1344a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1345a30f8f8cSSatish Balay }
1346a30f8f8cSSatish Balay 
1347d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1348d0d4cfc2SHong Zhang {
1349d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1350d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1351d0d4cfc2SHong Zhang 
1352d0d4cfc2SHong Zhang   PetscFunctionBegin;
1353d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1354d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1355d0d4cfc2SHong Zhang }
1356d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1357d0d4cfc2SHong Zhang {
1358d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1359d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1360d0d4cfc2SHong Zhang 
1361d0d4cfc2SHong Zhang   PetscFunctionBegin;
1362d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1363d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1364d0d4cfc2SHong Zhang }
1365d0d4cfc2SHong Zhang 
136699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
136799cafbc1SBarry Smith {
136899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
136999cafbc1SBarry Smith   PetscErrorCode ierr;
137099cafbc1SBarry Smith 
137199cafbc1SBarry Smith   PetscFunctionBegin;
137299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
137399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
137499cafbc1SBarry Smith   PetscFunctionReturn(0);
137599cafbc1SBarry Smith }
137699cafbc1SBarry Smith 
137799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
137899cafbc1SBarry Smith {
137999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
138099cafbc1SBarry Smith   PetscErrorCode ierr;
138199cafbc1SBarry Smith 
138299cafbc1SBarry Smith   PetscFunctionBegin;
138399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
138499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
138599cafbc1SBarry Smith   PetscFunctionReturn(0);
138699cafbc1SBarry Smith }
138799cafbc1SBarry Smith 
13887dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
138936032a97SHong Zhang    Input: isrow       - distributed(parallel),
139036032a97SHong Zhang           iscol_local - locally owned (seq)
139136032a97SHong Zhang */
139236032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13938f46ffcaSHong Zhang {
13948f46ffcaSHong Zhang   PetscErrorCode ierr;
13958f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13968f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
139736032a97SHong Zhang 
139836032a97SHong Zhang   PetscFunctionBegin;
13998f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
14008f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
14011098a8e8SHong Zhang   if (sz1 > sz2) {
14021098a8e8SHong Zhang     *flg = PETSC_FALSE;
14031098a8e8SHong Zhang     PetscFunctionReturn(0);
14041098a8e8SHong Zhang   }
14058f46ffcaSHong Zhang 
14068f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
14078f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
14088f46ffcaSHong Zhang 
14098f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
14108f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1411580bdb30SBarry Smith   ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr);
1412580bdb30SBarry Smith   ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr);
14138f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
14148f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
14158f46ffcaSHong Zhang 
14168f46ffcaSHong Zhang   nmatch=0;
14178f46ffcaSHong Zhang   k     = 0;
14188f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
14198f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
14208f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
14218f46ffcaSHong Zhang         k = j; nmatch++;
14228f46ffcaSHong Zhang         break;
14238f46ffcaSHong Zhang       }
14248f46ffcaSHong Zhang     }
14258f46ffcaSHong Zhang   }
14268f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
14278f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
14288f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
14298f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
14301098a8e8SHong Zhang   if (nmatch < sz1) {
14311098a8e8SHong Zhang     *flg = PETSC_FALSE;
14321098a8e8SHong Zhang   } else {
14331098a8e8SHong Zhang     *flg = PETSC_TRUE;
14341098a8e8SHong Zhang   }
143536032a97SHong Zhang   PetscFunctionReturn(0);
14368f46ffcaSHong Zhang }
143736032a97SHong Zhang 
14387dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
143936032a97SHong Zhang {
144036032a97SHong Zhang   PetscErrorCode ierr;
144136032a97SHong Zhang   IS             iscol_local;
144236032a97SHong Zhang   PetscInt       csize;
144336032a97SHong Zhang   PetscBool      isequal;
144436032a97SHong Zhang 
144536032a97SHong Zhang   PetscFunctionBegin;
144636032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
144736032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
144836032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
144936032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
145036032a97SHong Zhang   } else {
145136032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
145236032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
145336032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
14548f46ffcaSHong Zhang   }
14558f46ffcaSHong Zhang 
14567dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
14577dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
14588f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
14598f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
14608f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
14618f46ffcaSHong Zhang   }
14628f46ffcaSHong Zhang   PetscFunctionReturn(0);
14638f46ffcaSHong Zhang }
14648f46ffcaSHong Zhang 
1465dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1466a30f8f8cSSatish Balay {
1467a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1468dfbe8321SBarry Smith   PetscErrorCode ierr;
1469a30f8f8cSSatish Balay 
1470a30f8f8cSSatish Balay   PetscFunctionBegin;
1471a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1472a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1473a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1474a30f8f8cSSatish Balay }
1475a30f8f8cSSatish Balay 
1476dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1477a30f8f8cSSatish Balay {
1478a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1479a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1480dfbe8321SBarry Smith   PetscErrorCode ierr;
14813966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
1482a30f8f8cSSatish Balay 
1483a30f8f8cSSatish Balay   PetscFunctionBegin;
1484d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
148526fbe8dcSKarl Rupp 
1486a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
148726fbe8dcSKarl Rupp 
1488a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1489a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
149026fbe8dcSKarl Rupp 
1491a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
149226fbe8dcSKarl Rupp 
1493a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1494a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1495a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1496a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1497a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1498a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1499a30f8f8cSSatish Balay     info->memory       = isend[3];
1500a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1501a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
15023966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
150326fbe8dcSKarl Rupp 
1504a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1505a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1506a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1507a30f8f8cSSatish Balay     info->memory       = irecv[3];
1508a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1509a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
15103966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
151126fbe8dcSKarl Rupp 
1512a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1513a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1514a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1515a30f8f8cSSatish Balay     info->memory       = irecv[3];
1516a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1517f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1518a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1519a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1520a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1521a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1522a30f8f8cSSatish Balay }
1523a30f8f8cSSatish Balay 
1524ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1525a30f8f8cSSatish Balay {
1526a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1527d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1528dfbe8321SBarry Smith   PetscErrorCode ierr;
1529a30f8f8cSSatish Balay 
1530a30f8f8cSSatish Balay   PetscFunctionBegin;
1531e98b92d7SKris Buschelman   switch (op) {
1532512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1533e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
153428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1535a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1536c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1537e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
153843674050SBarry Smith     MatCheckPreallocated(A,1);
15394e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15404e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1541e98b92d7SKris Buschelman     break;
1542e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
154343674050SBarry Smith     MatCheckPreallocated(A,1);
15444e0d8c25SBarry Smith     a->roworiented = flg;
154526fbe8dcSKarl Rupp 
15464e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15474e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1548e98b92d7SKris Buschelman     break;
15494e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1550071fcb05SBarry Smith   case MAT_SORTED_FULL:
1551290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1552e98b92d7SKris Buschelman     break;
1553e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15544e0d8c25SBarry Smith     a->donotstash = flg;
1555e98b92d7SKris Buschelman     break;
1556e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
15574e0d8c25SBarry Smith     a->ht_flag = flg;
1558e98b92d7SKris Buschelman     break;
15599a4540c5SBarry Smith   case MAT_HERMITIAN:
156043674050SBarry Smith     MatCheckPreallocated(A,1);
1561eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15620f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1563eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1564547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1565eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1566eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1567eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1568eb1ec7c1SStefano Zampini       A->symmetric = PETSC_FALSE;
1569eb1ec7c1SStefano Zampini     }
15700f2140c7SStefano Zampini #endif
1571eeffb40dSHong Zhang     break;
1572ffa07934SHong Zhang   case MAT_SPD:
157377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
157443674050SBarry Smith     MatCheckPreallocated(A,1);
1575eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1576eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1577eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1578eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1579eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1580eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1581eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1582eb1ec7c1SStefano Zampini     }
1583eb1ec7c1SStefano Zampini #endif
1584eeffb40dSHong Zhang     break;
158577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
158643674050SBarry Smith     MatCheckPreallocated(A,1);
1587eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1588eeffb40dSHong Zhang     break;
15899a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1590e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1591290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
159277e54ba9SKris Buschelman     break;
1593d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15944e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1595d0d4cfc2SHong Zhang     break;
1596d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15974e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1598d0d4cfc2SHong Zhang     break;
1599d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
16004e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1601d0d4cfc2SHong Zhang     break;
1602e98b92d7SKris Buschelman   default:
1603e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1604a30f8f8cSSatish Balay   }
1605a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1606a30f8f8cSSatish Balay }
1607a30f8f8cSSatish Balay 
1608fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1609a30f8f8cSSatish Balay {
1610dfbe8321SBarry Smith   PetscErrorCode ierr;
16116e111a19SKarl Rupp 
1612a30f8f8cSSatish Balay   PetscFunctionBegin;
1613cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1614999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1615cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1616cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1617fc4dec0aSBarry Smith   }
16188115998fSBarry Smith   PetscFunctionReturn(0);
1619a30f8f8cSSatish Balay }
1620a30f8f8cSSatish Balay 
1621dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1622a30f8f8cSSatish Balay {
1623a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1624a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1625dfbe8321SBarry Smith   PetscErrorCode ierr;
16265e90f9d9SHong Zhang   PetscInt       nv,m,n;
1627ace3abfcSBarry Smith   PetscBool      flg;
1628a30f8f8cSSatish Balay 
1629a30f8f8cSSatish Balay   PetscFunctionBegin;
1630a30f8f8cSSatish Balay   if (ll != rr) {
1631b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1632e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1633a30f8f8cSSatish Balay   }
1634b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1635b3bf805bSHong Zhang 
16365e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1637e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1638b3bf805bSHong Zhang 
16395e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1640e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
16415e90f9d9SHong Zhang 
1642ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16435e90f9d9SHong Zhang 
16445e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
16450298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
16465e90f9d9SHong Zhang 
16475e90f9d9SHong Zhang   /* scale the diagonal part */
1648a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1649a30f8f8cSSatish Balay 
16505e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1651ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16520298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1653a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1654a30f8f8cSSatish Balay }
1655a30f8f8cSSatish Balay 
1656dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1657a30f8f8cSSatish Balay {
1658f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1659dfbe8321SBarry Smith   PetscErrorCode ierr;
1660a30f8f8cSSatish Balay 
1661a30f8f8cSSatish Balay   PetscFunctionBegin;
1662a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1663a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1664a30f8f8cSSatish Balay }
1665a30f8f8cSSatish Balay 
16666849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1667a30f8f8cSSatish Balay 
1668ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1669a30f8f8cSSatish Balay {
1670a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1671a30f8f8cSSatish Balay   Mat            a,b,c,d;
1672ace3abfcSBarry Smith   PetscBool      flg;
1673dfbe8321SBarry Smith   PetscErrorCode ierr;
1674a30f8f8cSSatish Balay 
1675a30f8f8cSSatish Balay   PetscFunctionBegin;
1676a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1677a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1678a30f8f8cSSatish Balay 
1679a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1680abc0a331SBarry Smith   if (flg) {
1681a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1682a30f8f8cSSatish Balay   }
1683b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1684a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1685a30f8f8cSSatish Balay }
1686a30f8f8cSSatish Balay 
16873c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16883c896bc6SHong Zhang {
16893c896bc6SHong Zhang   PetscErrorCode ierr;
16904c7a3774SStefano Zampini   PetscBool      isbaij;
16913c896bc6SHong Zhang 
16923c896bc6SHong Zhang   PetscFunctionBegin;
16934c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
16944c7a3774SStefano Zampini   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
16953c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16963c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1697d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16983c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1699d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
17003c896bc6SHong Zhang   } else {
17014c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
17024c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
17034c7a3774SStefano Zampini 
17043c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17053c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17063c896bc6SHong Zhang   }
1707cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
17083c896bc6SHong Zhang   PetscFunctionReturn(0);
17093c896bc6SHong Zhang }
17103c896bc6SHong Zhang 
17114994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1712273d9f13SBarry Smith {
1713dfbe8321SBarry Smith   PetscErrorCode ierr;
1714273d9f13SBarry Smith 
1715273d9f13SBarry Smith   PetscFunctionBegin;
1716535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1717273d9f13SBarry Smith   PetscFunctionReturn(0);
1718273d9f13SBarry Smith }
1719a5e6ed63SBarry Smith 
17204fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17214fe895cdSHong Zhang {
17224fe895cdSHong Zhang   PetscErrorCode ierr;
17234fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
17244fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17254fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
17264fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
17274fe895cdSHong Zhang 
17284fe895cdSHong Zhang   PetscFunctionBegin;
17294fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17304fe895cdSHong Zhang     PetscScalar alpha = a;
17314fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
17324fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1733c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
17348b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
17354fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
17364fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1737c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
17388b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1739a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1740ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1741ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1742ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1743ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
17444fe895cdSHong Zhang   } else {
17454de5dceeSHong Zhang     Mat      B;
17464de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
17474de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1748d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
17494de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
17504de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
17514de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
17524de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
17534de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
17544de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
17554de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
17564de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
17574de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
17584de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
17594de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
17604de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
176128be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
17624de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
17634de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1764d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17654de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17664fe895cdSHong Zhang   }
17674fe895cdSHong Zhang   PetscFunctionReturn(0);
17684fe895cdSHong Zhang }
17694fe895cdSHong Zhang 
17707dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1771a5e6ed63SBarry Smith {
17726849ba73SBarry Smith   PetscErrorCode ierr;
17731302d50aSBarry Smith   PetscInt       i;
1774afebec48SHong Zhang   PetscBool      flg;
1775a5e6ed63SBarry Smith 
17766849ba73SBarry Smith   PetscFunctionBegin;
17777dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1778a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1779a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1780afebec48SHong Zhang     if (!flg) {
1781b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1782a5e6ed63SBarry Smith     }
17834dcd73b1SHong Zhang   }
1784a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1785a5e6ed63SBarry Smith }
1786a5e6ed63SBarry Smith 
17877d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17887d68702bSBarry Smith {
17897d68702bSBarry Smith   PetscErrorCode ierr;
17907d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17916f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17927d68702bSBarry Smith 
17937d68702bSBarry Smith   PetscFunctionBegin;
17946f33a894SBarry Smith   if (!Y->preallocated) {
17957d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17966f33a894SBarry Smith   } else if (!aij->nz) {
1797b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17986f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1799b83222d8SBarry Smith     aij->nonew = nonew;
18007d68702bSBarry Smith   }
18017d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
18027d68702bSBarry Smith   PetscFunctionReturn(0);
18037d68702bSBarry Smith }
18047d68702bSBarry Smith 
18053b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
18063b49f96aSBarry Smith {
18073b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
18083b49f96aSBarry Smith   PetscErrorCode ierr;
18093b49f96aSBarry Smith 
18103b49f96aSBarry Smith   PetscFunctionBegin;
18113b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
18123b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
18133b49f96aSBarry Smith   if (d) {
18143b49f96aSBarry Smith     PetscInt rstart;
18153b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
18163b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
18173b49f96aSBarry Smith 
18183b49f96aSBarry Smith   }
18193b49f96aSBarry Smith   PetscFunctionReturn(0);
18203b49f96aSBarry Smith }
18213b49f96aSBarry Smith 
1822a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1823a5b7ff6bSBarry Smith {
1824a5b7ff6bSBarry Smith   PetscFunctionBegin;
1825a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1826a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1827a5b7ff6bSBarry Smith }
18283b49f96aSBarry Smith 
1829a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
18303964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1831a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1832a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1833a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
183497304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1835431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1836431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1837a30f8f8cSSatish Balay                                        0,
1838a30f8f8cSSatish Balay                                        0,
1839a30f8f8cSSatish Balay                                        0,
184097304618SKris Buschelman                                /* 10*/ 0,
1841a30f8f8cSSatish Balay                                        0,
1842a30f8f8cSSatish Balay                                        0,
184341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1844a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
184597304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1846a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1847a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1848a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1849a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
185097304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1851a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1852a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1853a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1854d519adbfSMatthew Knepley                                /* 24*/ 0,
1855a30f8f8cSSatish Balay                                        0,
1856a30f8f8cSSatish Balay                                        0,
1857a30f8f8cSSatish Balay                                        0,
1858a30f8f8cSSatish Balay                                        0,
18594994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1860b5df2d14SHong Zhang                                        0,
1861a30f8f8cSSatish Balay                                        0,
1862a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1863a30f8f8cSSatish Balay                                        0,
1864d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1865a30f8f8cSSatish Balay                                        0,
1866a30f8f8cSSatish Balay                                        0,
1867a30f8f8cSSatish Balay                                        0,
1868a30f8f8cSSatish Balay                                        0,
1869d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
18707dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1871d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1872a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18733c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1874d519adbfSMatthew Knepley                                /* 44*/ 0,
1875a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18767d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1877a30f8f8cSSatish Balay                                        0,
1878a30f8f8cSSatish Balay                                        0,
1879f73d5cc4SBarry Smith                                /* 49*/ 0,
1880a30f8f8cSSatish Balay                                        0,
1881a30f8f8cSSatish Balay                                        0,
1882a30f8f8cSSatish Balay                                        0,
1883a30f8f8cSSatish Balay                                        0,
1884d519adbfSMatthew Knepley                                /* 54*/ 0,
1885a30f8f8cSSatish Balay                                        0,
1886a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1887a30f8f8cSSatish Balay                                        0,
1888a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18897dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1890a30f8f8cSSatish Balay                                        0,
1891a30f8f8cSSatish Balay                                        0,
1892357abbc8SBarry Smith                                        0,
189324d5174aSHong Zhang                                        0,
1894d519adbfSMatthew Knepley                                /* 64*/ 0,
189524d5174aSHong Zhang                                        0,
189624d5174aSHong Zhang                                        0,
189724d5174aSHong Zhang                                        0,
189824d5174aSHong Zhang                                        0,
1899d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
190024d5174aSHong Zhang                                        0,
190128d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
190297304618SKris Buschelman                                        0,
190397304618SKris Buschelman                                        0,
1904d519adbfSMatthew Knepley                                /* 74*/ 0,
190597304618SKris Buschelman                                        0,
190697304618SKris Buschelman                                        0,
190797304618SKris Buschelman                                        0,
190897304618SKris Buschelman                                        0,
1909d519adbfSMatthew Knepley                                /* 79*/ 0,
191097304618SKris Buschelman                                        0,
191197304618SKris Buschelman                                        0,
191297304618SKris Buschelman                                        0,
19135bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1914d519adbfSMatthew Knepley                                /* 84*/ 0,
1915865e5f61SKris Buschelman                                        0,
1916865e5f61SKris Buschelman                                        0,
1917865e5f61SKris Buschelman                                        0,
1918865e5f61SKris Buschelman                                        0,
1919d519adbfSMatthew Knepley                                /* 89*/ 0,
1920865e5f61SKris Buschelman                                        0,
1921865e5f61SKris Buschelman                                        0,
1922865e5f61SKris Buschelman                                        0,
1923865e5f61SKris Buschelman                                        0,
1924d519adbfSMatthew Knepley                                /* 94*/ 0,
1925865e5f61SKris Buschelman                                        0,
1926865e5f61SKris Buschelman                                        0,
192799cafbc1SBarry Smith                                        0,
192899cafbc1SBarry Smith                                        0,
1929d519adbfSMatthew Knepley                                /* 99*/ 0,
193099cafbc1SBarry Smith                                        0,
193199cafbc1SBarry Smith                                        0,
193299cafbc1SBarry Smith                                        0,
193399cafbc1SBarry Smith                                        0,
1934d519adbfSMatthew Knepley                                /*104*/ 0,
193599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1936d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1937d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
193895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
193995936485SShri Abhyankar                                /*109*/ 0,
194095936485SShri Abhyankar                                        0,
194195936485SShri Abhyankar                                        0,
194295936485SShri Abhyankar                                        0,
19433b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
194495936485SShri Abhyankar                                /*114*/ 0,
194595936485SShri Abhyankar                                        0,
194695936485SShri Abhyankar                                        0,
194795936485SShri Abhyankar                                        0,
194895936485SShri Abhyankar                                        0,
194995936485SShri Abhyankar                                /*119*/ 0,
195095936485SShri Abhyankar                                        0,
195195936485SShri Abhyankar                                        0,
19523964eb88SJed Brown                                        0,
19533964eb88SJed Brown                                        0,
19543964eb88SJed Brown                                /*124*/ 0,
19553964eb88SJed Brown                                        0,
19563964eb88SJed Brown                                        0,
19573964eb88SJed Brown                                        0,
19583964eb88SJed Brown                                        0,
19593964eb88SJed Brown                                /*129*/ 0,
19603964eb88SJed Brown                                        0,
19613964eb88SJed Brown                                        0,
19623964eb88SJed Brown                                        0,
19633964eb88SJed Brown                                        0,
19643964eb88SJed Brown                                /*134*/ 0,
19653964eb88SJed Brown                                        0,
19663964eb88SJed Brown                                        0,
19673964eb88SJed Brown                                        0,
19683964eb88SJed Brown                                        0,
196946533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
1970f9426fe0SMark Adams                                        0,
197159f5e6ceSHong Zhang                                        0,
197259f5e6ceSHong Zhang                                        0,
197359f5e6ceSHong Zhang                                        0,
197459f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
197599cafbc1SBarry Smith };
1976a30f8f8cSSatish Balay 
1977b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1978a23d5eceSKris Buschelman {
1979476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
1980dfbe8321SBarry Smith   PetscErrorCode ierr;
1981535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
19825d2a9ed1SStefano Zampini   PetscMPIInt    size;
1983a23d5eceSKris Buschelman 
1984a23d5eceSKris Buschelman   PetscFunctionBegin;
198533d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
198626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
198726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1988e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1989476417e5SBarry Smith   if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N);
1990476417e5SBarry Smith   if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n);
1991899cda47SBarry Smith 
1992d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1993d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1994c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1995a23d5eceSKris Buschelman 
1996d0f46423SBarry Smith   B->rmap->bs = bs;
1997a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1998a23d5eceSKris Buschelman   b->mbs      = mbs;
1999a23d5eceSKris Buschelman   b->Mbs      = Mbs;
2000de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
2001de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
2002a23d5eceSKris Buschelman 
2003a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2004d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2005a23d5eceSKris Buschelman   }
2006d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2007d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2008a23d5eceSKris Buschelman 
2009d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2010d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2011a23d5eceSKris Buschelman 
2012cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2013cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2014cb7b82ddSBarry Smith #else
2015cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2016cb7b82ddSBarry Smith #endif
2017cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2018cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2019cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2020cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
2021cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
2022cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2023cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2024cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2025cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2026cb7b82ddSBarry Smith 
2027cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
20285d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2029cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2030cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
20315d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2032cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2033cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2034cb7b82ddSBarry Smith 
2035526dfc15SBarry Smith   if (!B->preallocated) {
2036f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2037d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
20389c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
20393bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2040ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2041526dfc15SBarry Smith   }
2042a23d5eceSKris Buschelman 
2043526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2044526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
204526fbe8dcSKarl Rupp 
2046526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2047cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2048cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2049a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2050a23d5eceSKris Buschelman }
2051a23d5eceSKris Buschelman 
2052dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2053dfb205c3SBarry Smith {
205402106b30SBarry Smith   PetscInt       m,rstart,cend;
20550cd7f59aSBarry Smith   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0;
2056dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2057dfb205c3SBarry Smith   PetscScalar    *values=0;
2058bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
2059dfb205c3SBarry Smith   PetscErrorCode ierr;
20603bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2061dfb205c3SBarry Smith 
2062dfb205c3SBarry Smith   PetscFunctionBegin;
2063ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2064dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2065dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2066dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2067dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2068e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2069dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2070dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2071dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2072dfb205c3SBarry Smith 
2073dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2074dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2075dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2076dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2077dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
20780cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2079dfb205c3SBarry Smith     JJ     = jj + ii[i];
20800cd7f59aSBarry Smith     bd     = 0;
2081dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
20820cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2083dfb205c3SBarry Smith       JJ++;
20840cd7f59aSBarry Smith       bd++;
2085dfb205c3SBarry Smith     }
2086dfb205c3SBarry Smith     d  = 0;
2087dfb205c3SBarry Smith     for (; j<nz; j++) {
2088dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2089dfb205c3SBarry Smith       d++;
2090dfb205c3SBarry Smith     }
2091dfb205c3SBarry Smith     d_nnz[i] = d;
20920cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20930cd7f59aSBarry Smith     nz       = nz - bd;
20940cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2095dfb205c3SBarry Smith   }
2096dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2097bb80cfbbSStefano Zampini   ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
2098dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2099dfb205c3SBarry Smith 
2100dfb205c3SBarry Smith   values = (PetscScalar*)V;
2101dfb205c3SBarry Smith   if (!values) {
2102580bdb30SBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2103dfb205c3SBarry Smith   }
2104dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2105dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2106dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2107dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2108bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2109dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2110dfb205c3SBarry Smith       ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2111bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2112bb80cfbbSStefano Zampini       PetscInt j;
21130cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
21140cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
21150cd7f59aSBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
21160cd7f59aSBarry Smith       }
21170cd7f59aSBarry Smith     }
2118dfb205c3SBarry Smith   }
2119dfb205c3SBarry Smith 
2120dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
21213bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
21223bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2123dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2124dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
21253bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
21263bd0feecSPierre Jolivet 
21277827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2128dfb205c3SBarry Smith   PetscFunctionReturn(0);
2129dfb205c3SBarry Smith }
2130dfb205c3SBarry Smith 
21310bad9183SKris Buschelman /*MC
2132fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2133828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2134828413b8SBarry Smith    the matrix is stored.
2135828413b8SBarry Smith 
2136828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2137828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
21380bad9183SKris Buschelman 
21390bad9183SKris Buschelman    Options Database Keys:
21400bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
21410bad9183SKris Buschelman 
2142476417e5SBarry Smith    Notes:
2143476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2144476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2145476417e5SBarry Smith 
21460bad9183SKris Buschelman    Level: beginner
21470bad9183SKris Buschelman 
2148fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType
21490bad9183SKris Buschelman M*/
21500bad9183SKris Buschelman 
21518cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2152b5df2d14SHong Zhang {
2153b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2154dfbe8321SBarry Smith   PetscErrorCode ierr;
215594ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2156b5df2d14SHong Zhang 
2157b5df2d14SHong Zhang   PetscFunctionBegin;
2158b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2159b0a32e0cSBarry Smith   B->data = (void*)b;
2160b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2161b5df2d14SHong Zhang 
2162b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2163b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2164b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2165b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
216626fbe8dcSKarl Rupp 
2167ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2168ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2169b5df2d14SHong Zhang 
2170b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2171854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2172b5df2d14SHong Zhang 
2173b5df2d14SHong Zhang   /* build cache for off array entries formed */
2174ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
217526fbe8dcSKarl Rupp 
2176b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21770298fd71SBarry Smith   b->colmap      = NULL;
21780298fd71SBarry Smith   b->garray      = NULL;
2179b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2180b5df2d14SHong Zhang 
2181b5df2d14SHong Zhang   /* stuff used in block assembly */
2182b5df2d14SHong Zhang   b->barray = 0;
2183b5df2d14SHong Zhang 
2184b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2185b5df2d14SHong Zhang   b->lvec    = 0;
2186b5df2d14SHong Zhang   b->Mvctx   = 0;
218740781036SHong Zhang   b->slvec0  = 0;
218840781036SHong Zhang   b->slvec0b = 0;
218940781036SHong Zhang   b->slvec1  = 0;
219040781036SHong Zhang   b->slvec1a = 0;
219140781036SHong Zhang   b->slvec1b = 0;
219240781036SHong Zhang   b->sMvctx  = 0;
2193b5df2d14SHong Zhang 
2194b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2195b5df2d14SHong Zhang   b->rowindices   = 0;
2196b5df2d14SHong Zhang   b->rowvalues    = 0;
2197b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2198b5df2d14SHong Zhang 
2199b5df2d14SHong Zhang   /* hash table stuff */
2200b5df2d14SHong Zhang   b->ht           = 0;
2201b5df2d14SHong Zhang   b->hd           = 0;
2202b5df2d14SHong Zhang   b->ht_size      = 0;
2203b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2204b5df2d14SHong Zhang   b->ht_fact      = 0;
2205b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2206b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2207b5df2d14SHong Zhang 
22087dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
22097a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
22107a868f3eSHong Zhang 
221159ffdab8SBarry Smith   b->in_loc = 0;
221259ffdab8SBarry Smith   b->v_loc  = 0;
221359ffdab8SBarry Smith   b->n_loc  = 0;
221494ae4db5SBarry Smith 
2215bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2216bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2217bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2218bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
22196214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
22206214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
22216214f412SHong Zhang #endif
2222*d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2223*d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);CHKERRQ(ierr);
2224*d24d4204SJose E. Roman #endif
222528d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
222628d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
2227aa5a9175SDahai Guo 
222823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
222923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
223023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
223123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
22329899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
2233eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
223413647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
223513647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
2236eb1ec7c1SStefano Zampini #else
2237eb1ec7c1SStefano Zampini   B->hermitian                  = PETSC_TRUE;
2238eb1ec7c1SStefano Zampini   B->hermitian_set              = PETSC_TRUE;
2239eb1ec7c1SStefano Zampini #endif
224013647f61SHong Zhang 
224117667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
224294ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
224394ae4db5SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
224494ae4db5SBarry Smith   if (flg) {
224594ae4db5SBarry Smith     PetscReal fact = 1.39;
224694ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
224794ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
224894ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
224994ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
225094ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
225194ae4db5SBarry Smith   }
225294ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2253b5df2d14SHong Zhang   PetscFunctionReturn(0);
2254b5df2d14SHong Zhang }
2255b5df2d14SHong Zhang 
2256209238afSKris Buschelman /*MC
2257002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2258209238afSKris Buschelman 
2259209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2260209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2261209238afSKris Buschelman 
2262209238afSKris Buschelman    Options Database Keys:
2263209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2264209238afSKris Buschelman 
2265209238afSKris Buschelman   Level: beginner
2266209238afSKris Buschelman 
2267209238afSKris Buschelman .seealso: MatCreateMPISBAIJ, MATSEQSBAIJ, MATMPISBAIJ
2268209238afSKris Buschelman M*/
2269209238afSKris Buschelman 
2270b5df2d14SHong Zhang /*@C
2271b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2272b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2273b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2274b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2275b5df2d14SHong Zhang 
2276b5df2d14SHong Zhang    Collective on Mat
2277b5df2d14SHong Zhang 
2278b5df2d14SHong Zhang    Input Parameters:
22791c4f3114SJed Brown +  B - the matrix
2280bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2281bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2282b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2283b5df2d14SHong Zhang            submatrix  (same for all local rows)
2284b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
22856d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22860298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
228795742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2288b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2289b5df2d14SHong Zhang            submatrix (same for all local rows).
2290b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2291c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22920298fd71SBarry Smith            (possibly different for each block row) or NULL.
2293b5df2d14SHong Zhang 
2294b5df2d14SHong Zhang 
2295b5df2d14SHong Zhang    Options Database Keys:
2296a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2297b5df2d14SHong Zhang                      block calculations (much slower)
2298a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2299b5df2d14SHong Zhang 
2300b5df2d14SHong Zhang    Notes:
2301b5df2d14SHong Zhang 
2302b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2303b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2304b5df2d14SHong Zhang 
230549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
230649a6f317SBarry Smith 
2307b5df2d14SHong Zhang    Storage Information:
2308b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2309b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2310b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2311b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2312b5df2d14SHong Zhang 
2313b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2314b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
23150298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2316b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2317b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2318b5df2d14SHong Zhang 
2319aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2320aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2321aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2322aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2323aa95bbe8SBarry Smith 
2324b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2325b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2326b5df2d14SHong Zhang 
2327b5df2d14SHong Zhang .vb
2328b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2329a4b1a0f6SJed Brown           --------------------------
2330c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2331c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2332c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2333a4b1a0f6SJed Brown           --------------------------
2334b5df2d14SHong Zhang .ve
2335b5df2d14SHong Zhang 
2336b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2337b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
23386d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23396d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2340b5df2d14SHong Zhang 
23416d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23426d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2343c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2344c2fc9fa9SBarry Smith 
2345b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2346b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2347b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2348b5df2d14SHong Zhang    matrices.
2349b5df2d14SHong Zhang 
2350b5df2d14SHong Zhang    Level: intermediate
2351b5df2d14SHong Zhang 
2352ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2353b5df2d14SHong Zhang @*/
23547087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2355b5df2d14SHong Zhang {
23564ac538c5SBarry Smith   PetscErrorCode ierr;
2357b5df2d14SHong Zhang 
2358b5df2d14SHong Zhang   PetscFunctionBegin;
23596ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
23606ba663aaSJed Brown   PetscValidType(B,1);
23616ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
23624ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2363b5df2d14SHong Zhang   PetscFunctionReturn(0);
2364b5df2d14SHong Zhang }
2365b5df2d14SHong Zhang 
2366a30f8f8cSSatish Balay /*@C
236769b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2368a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2369a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2370a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2371a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2372a30f8f8cSSatish Balay 
2373d083f849SBarry Smith    Collective
2374a30f8f8cSSatish Balay 
2375a30f8f8cSSatish Balay    Input Parameters:
2376a30f8f8cSSatish Balay +  comm - MPI communicator
2377bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2378bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2379a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2380a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2381a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2382a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2383a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2384a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2385a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2386a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2387a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2388a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2389a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
23906d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23910298fd71SBarry Smith            (possibly different for each block block row) or NULL.
239295742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
239395742e49SBarry Smith            set its value even if it is zero.
2394a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2395a30f8f8cSSatish Balay            submatrix (same for all local rows).
2396a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2397a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23980298fd71SBarry Smith            each block row) or NULL.
2399a30f8f8cSSatish Balay 
2400a30f8f8cSSatish Balay    Output Parameter:
2401a30f8f8cSSatish Balay .  A - the matrix
2402a30f8f8cSSatish Balay 
2403a30f8f8cSSatish Balay    Options Database Keys:
2404a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2405a30f8f8cSSatish Balay                      block calculations (much slower)
2406a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2407a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2408a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2409a30f8f8cSSatish Balay 
2410175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2411f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2412175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2413175b88e8SBarry Smith 
2414a30f8f8cSSatish Balay    Notes:
2415d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
24166d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2417d1be2dadSMatthew Knepley 
2418a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2419a30f8f8cSSatish Balay    (possibly both).
2420a30f8f8cSSatish Balay 
2421a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2422a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2423a30f8f8cSSatish Balay 
242449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
242549a6f317SBarry Smith 
2426a30f8f8cSSatish Balay    Storage Information:
2427a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2428a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2429a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2430a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2431a30f8f8cSSatish Balay 
2432a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2433a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
24340298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2435a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2436a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2437a30f8f8cSSatish Balay 
2438a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2439a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2440a30f8f8cSSatish Balay 
2441a30f8f8cSSatish Balay .vb
2442a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2443a4b1a0f6SJed Brown           --------------------------
2444c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2445c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2446c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2447a4b1a0f6SJed Brown           --------------------------
2448a30f8f8cSSatish Balay .ve
2449a30f8f8cSSatish Balay 
2450a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2451a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
24526d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24536d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2454a30f8f8cSSatish Balay 
24556d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24566d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2457a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2458a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2459a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2460a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2461a30f8f8cSSatish Balay    matrices.
2462a30f8f8cSSatish Balay 
2463a30f8f8cSSatish Balay    Level: intermediate
2464a30f8f8cSSatish Balay 
246569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2466a30f8f8cSSatish Balay @*/
2467a30f8f8cSSatish Balay 
246869b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2469a30f8f8cSSatish Balay {
24706849ba73SBarry Smith   PetscErrorCode ierr;
24711302d50aSBarry Smith   PetscMPIInt    size;
2472a30f8f8cSSatish Balay 
2473a30f8f8cSSatish Balay   PetscFunctionBegin;
2474f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2475f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2476273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2477273d9f13SBarry Smith   if (size > 1) {
2478b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2479b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2480273d9f13SBarry Smith   } else {
2481273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2482273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2483273d9f13SBarry Smith   }
2484a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2485a30f8f8cSSatish Balay }
2486a30f8f8cSSatish Balay 
2487a30f8f8cSSatish Balay 
24886849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2489a30f8f8cSSatish Balay {
2490a30f8f8cSSatish Balay   Mat            mat;
2491a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2492dfbe8321SBarry Smith   PetscErrorCode ierr;
2493d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2494387bc808SHong Zhang   PetscScalar    *array;
2495a30f8f8cSSatish Balay 
2496a30f8f8cSSatish Balay   PetscFunctionBegin;
2497a30f8f8cSSatish Balay   *newmat = 0;
249826fbe8dcSKarl Rupp 
2499ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2500d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
25017adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
25021e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
25031e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2504e1b6402fSHong Zhang 
2505d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2506273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
250782327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
25087fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
25097fff6886SHong Zhang 
2510b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2511a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2512a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2513a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2514a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2515a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2516a30f8f8cSSatish Balay 
2517a30f8f8cSSatish Balay   a->size         = oldmat->size;
2518a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2519a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2520a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2521a30f8f8cSSatish Balay   a->rowindices   = 0;
2522a30f8f8cSSatish Balay   a->rowvalues    = 0;
2523a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2524a30f8f8cSSatish Balay   a->barray       = 0;
2525899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2526899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2527899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2528899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2529a30f8f8cSSatish Balay 
2530a30f8f8cSSatish Balay   /* hash table stuff */
2531a30f8f8cSSatish Balay   a->ht           = 0;
2532a30f8f8cSSatish Balay   a->hd           = 0;
2533a30f8f8cSSatish Balay   a->ht_size      = 0;
2534a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2535a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2536a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2537a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2538a30f8f8cSSatish Balay 
2539580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr);
2540a30f8f8cSSatish Balay   if (oldmat->colmap) {
2541a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2542a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2543a30f8f8cSSatish Balay #else
2544854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
25453bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2546580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
2547a30f8f8cSSatish Balay #endif
2548a30f8f8cSSatish Balay   } else a->colmap = 0;
2549387bc808SHong Zhang 
2550a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2551785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
25523bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2553580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
2554a30f8f8cSSatish Balay   } else a->garray = 0;
2555a30f8f8cSSatish Balay 
2556ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2557a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
25583bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2559a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
25603bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
256182327fa8SHong Zhang 
256282327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
25633bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
256482327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
25653bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2566387bc808SHong Zhang 
2567387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
25681ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2569778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2570778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
25711ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
25721ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2573778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
25741ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
25753bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
25763bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
25773bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
25783bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
25793bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2580387bc808SHong Zhang 
2581387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2582387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2583387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
25843bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
258582327fa8SHong Zhang 
2586a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
25873bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2588a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
25893bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2590140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2591a30f8f8cSSatish Balay   *newmat = mat;
2592a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2593a30f8f8cSSatish Balay }
2594a30f8f8cSSatish Balay 
2595618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2596618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2597618cc2edSLisandro Dalcin 
2598618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer)
259995936485SShri Abhyankar {
260095936485SShri Abhyankar   PetscErrorCode ierr;
26017f489da9SVaclav Hapla   PetscBool      isbinary;
260295936485SShri Abhyankar 
260395936485SShri Abhyankar   PetscFunctionBegin;
26047f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
2605618cc2edSLisandro Dalcin   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
2606618cc2edSLisandro Dalcin   ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
260795936485SShri Abhyankar   PetscFunctionReturn(0);
260895936485SShri Abhyankar }
260995936485SShri Abhyankar 
2610dcf5cc72SBarry Smith /*XXXXX@
2611a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2612a30f8f8cSSatish Balay 
2613a30f8f8cSSatish Balay    Input Parameters:
2614a30f8f8cSSatish Balay .  mat  - the matrix
2615a30f8f8cSSatish Balay .  fact - factor
2616a30f8f8cSSatish Balay 
2617c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2618a30f8f8cSSatish Balay 
2619a30f8f8cSSatish Balay    Level: advanced
2620a30f8f8cSSatish Balay 
2621a30f8f8cSSatish Balay   Notes:
2622a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2623a30f8f8cSSatish Balay 
2624a30f8f8cSSatish Balay .seealso: MatSetOption()
2625dcf5cc72SBarry Smith @XXXXX*/
2626dcf5cc72SBarry Smith 
262724d5174aSHong Zhang 
2628985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
262924d5174aSHong Zhang {
263024d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2631f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2632ca54ac64SHong Zhang   PetscReal      atmp;
263387828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2634dfbe8321SBarry Smith   PetscErrorCode ierr;
26351302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
26361302d50aSBarry Smith   PetscMPIInt    rank,size;
26371302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
263887828ca2SBarry Smith   PetscScalar    *va;
26398a1c53f2SBarry Smith   MatScalar      *ba;
2640f4c0e9e4SHong Zhang   MPI_Status     stat;
264124d5174aSHong Zhang 
264224d5174aSHong Zhang   PetscFunctionBegin;
2643e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
26440298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
26451ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2646f4c0e9e4SHong Zhang 
2647ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2648ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2649f4c0e9e4SHong Zhang 
2650d0f46423SBarry Smith   bs  = A->rmap->bs;
2651f4c0e9e4SHong Zhang   mbs = a->mbs;
2652f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2653f4c0e9e4SHong Zhang   ba  = b->a;
2654f4c0e9e4SHong Zhang   bi  = b->i;
2655f4c0e9e4SHong Zhang   bj  = b->j;
2656f4c0e9e4SHong Zhang 
2657f4c0e9e4SHong Zhang   /* find ownerships */
2658d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2659f4c0e9e4SHong Zhang 
2660f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2661580bdb30SBarry Smith   ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2662f4c0e9e4SHong Zhang 
2663f4c0e9e4SHong Zhang   /* row_max for B */
2664b8475685SHong Zhang   if (rank != size-1) {
2665f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2666f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2667f4c0e9e4SHong Zhang       brow  = bs*i;
2668f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2669f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2670f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2671ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
267204d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2673f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2674f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2675ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2676ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2677f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2678f4c0e9e4SHong Zhang           }
2679f4c0e9e4SHong Zhang         }
2680f4c0e9e4SHong Zhang         bj++;
2681f4c0e9e4SHong Zhang       }
2682f4c0e9e4SHong Zhang     }
2683f4c0e9e4SHong Zhang 
2684f4c0e9e4SHong Zhang     /* send values to its owners */
2685f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2686f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2687ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2688ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2689ca54ac64SHong Zhang     }
2690f4c0e9e4SHong Zhang   }
2691f4c0e9e4SHong Zhang 
2692f4c0e9e4SHong Zhang   /* receive values */
2693ca54ac64SHong Zhang   if (rank) {
2694f4c0e9e4SHong Zhang     rvalues = work;
2695ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2696f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2697ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2698f4c0e9e4SHong Zhang       /* process values */
2699f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2700ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2701f4c0e9e4SHong Zhang       }
2702f4c0e9e4SHong Zhang     }
2703ca54ac64SHong Zhang   }
2704f4c0e9e4SHong Zhang 
27051ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2706ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
270724d5174aSHong Zhang   PetscFunctionReturn(0);
270824d5174aSHong Zhang }
27092798e883SHong Zhang 
271041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
27112798e883SHong Zhang {
27122798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2713dfbe8321SBarry Smith   PetscErrorCode    ierr;
2714d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
27153649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2716ffe4fb16SHong Zhang   Vec               bb1;
27173649974fSBarry Smith   const PetscScalar *b;
2718ffe4fb16SHong Zhang 
2719ffe4fb16SHong Zhang   PetscFunctionBegin;
2720e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2721e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2722ffe4fb16SHong Zhang 
2723a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
272441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2725a2b30743SBarry Smith     PetscFunctionReturn(0);
2726a2b30743SBarry Smith   }
2727a2b30743SBarry Smith 
2728ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2729ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
273041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2731ffe4fb16SHong Zhang       its--;
2732ffe4fb16SHong Zhang     }
2733ffe4fb16SHong Zhang 
2734ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2735ffe4fb16SHong Zhang     while (its--) {
2736ffe4fb16SHong Zhang 
2737ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2738ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2739ffe4fb16SHong Zhang 
2740ffe4fb16SHong Zhang       /* copy xx into slvec0a */
27411ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
27421ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2743580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr);
27441ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2745ffe4fb16SHong Zhang 
2746efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2747ffe4fb16SHong Zhang 
2748ffe4fb16SHong Zhang       /* copy bb into slvec1a */
27491ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
27503649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2751580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr);
27521ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2753ffe4fb16SHong Zhang 
2754ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2755fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2756ffe4fb16SHong Zhang 
2757ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27581ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2759a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2760ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2761ffe4fb16SHong Zhang 
2762ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2763ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2764ffe4fb16SHong Zhang 
2765ffe4fb16SHong Zhang       /* local diagonal sweep */
276641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2767ffe4fb16SHong Zhang     }
27686bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2769fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
277041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2771fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
277241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2773fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2774fa22f6d0SBarry Smith     Vec               xx1;
2775ace3abfcSBarry Smith     PetscBool         hasop;
277620f1ed55SBarry Smith     const PetscScalar *diag;
2777887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
277820f1ed55SBarry Smith     PetscInt          i,n;
2779fa22f6d0SBarry Smith 
2780fa22f6d0SBarry Smith     if (!mat->xx1) {
2781fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2782fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2783fa22f6d0SBarry Smith     }
2784fa22f6d0SBarry Smith     xx1 = mat->xx1;
2785fa22f6d0SBarry Smith     bb1 = mat->bb1;
2786fa22f6d0SBarry Smith 
278741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2788fa22f6d0SBarry Smith 
2789fa22f6d0SBarry Smith     if (!mat->diag) {
2790effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27912a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2792fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2793fa22f6d0SBarry Smith     }
2794fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2795fa22f6d0SBarry Smith 
2796fa22f6d0SBarry Smith     if (hasop) {
2797fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2798887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
279920f1ed55SBarry Smith     } else {
280020f1ed55SBarry Smith       /*
280120f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
280220f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2803887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
280420f1ed55SBarry Smith       */
280520f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
28063649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
28073649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
280820f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
280920f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2810887ee2caSBarry Smith       if (omega == 1.0) {
281126fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
281220f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2813887ee2caSBarry Smith       } else {
281426fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2815887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2816887ee2caSBarry Smith       }
281720f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
28183649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
28193649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
282020f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
282120f1ed55SBarry Smith     }
2822fa22f6d0SBarry Smith 
2823fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2824fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2825fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2826fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2827fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2828580bdb30SBarry Smith     ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
2829fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2830fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2831fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2832fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2833effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2834fa22f6d0SBarry Smith 
2835fa22f6d0SBarry Smith     /* local sweep */
283641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2837fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2838f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2839ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2840ffe4fb16SHong Zhang }
2841ffe4fb16SHong Zhang 
284241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2843ffe4fb16SHong Zhang {
2844ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2845dfbe8321SBarry Smith   PetscErrorCode ierr;
28462798e883SHong Zhang   Vec            lvec1,bb1;
28472798e883SHong Zhang 
28482798e883SHong Zhang   PetscFunctionBegin;
2849e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2850e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
28512798e883SHong Zhang 
2852c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
28532798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
285441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
28552798e883SHong Zhang       its--;
28562798e883SHong Zhang     }
28572798e883SHong Zhang 
28582798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
28592798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
28602798e883SHong Zhang     while (its--) {
2861ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
28622798e883SHong Zhang 
28632798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
28642798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2865efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
28662798e883SHong Zhang 
2867ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
28682798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2869ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
28702798e883SHong Zhang 
28712798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2872efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
28732798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
28742798e883SHong Zhang 
2875ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
28762798e883SHong Zhang 
2877c14dc6b6SHong Zhang       /* diagonal sweep */
287841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
28792798e883SHong Zhang     }
28806bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
28816bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
28826bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
28832798e883SHong Zhang   PetscFunctionReturn(0);
28842798e883SHong Zhang }
28852798e883SHong Zhang 
2886dfb205c3SBarry Smith /*@
2887dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2888dfb205c3SBarry Smith          CSR format the local rows.
2889dfb205c3SBarry Smith 
2890d083f849SBarry Smith    Collective
2891dfb205c3SBarry Smith 
2892dfb205c3SBarry Smith    Input Parameters:
2893dfb205c3SBarry Smith +  comm - MPI communicator
2894dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2895dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2896dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2897dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2898dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2899dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2900dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2901483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2902dfb205c3SBarry Smith .   j - column indices
2903dfb205c3SBarry Smith -   a - matrix values
2904dfb205c3SBarry Smith 
2905dfb205c3SBarry Smith    Output Parameter:
2906dfb205c3SBarry Smith .   mat - the matrix
2907dfb205c3SBarry Smith 
2908dfb205c3SBarry Smith    Level: intermediate
2909dfb205c3SBarry Smith 
2910dfb205c3SBarry Smith    Notes:
2911dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2912dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2913dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2914dfb205c3SBarry Smith 
2915dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2916dfb205c3SBarry Smith 
2917dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
291869b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2919dfb205c3SBarry Smith @*/
29207087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2921dfb205c3SBarry Smith {
2922dfb205c3SBarry Smith   PetscErrorCode ierr;
2923dfb205c3SBarry Smith 
2924dfb205c3SBarry Smith 
2925dfb205c3SBarry Smith   PetscFunctionBegin;
2926f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2927dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2928dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2929dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2930dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2931dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2932dfb205c3SBarry Smith   PetscFunctionReturn(0);
2933dfb205c3SBarry Smith }
2934dfb205c3SBarry Smith 
2935dfb205c3SBarry Smith 
2936dfb205c3SBarry Smith /*@C
2937664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
2938dfb205c3SBarry Smith 
2939d083f849SBarry Smith    Collective
2940dfb205c3SBarry Smith 
2941dfb205c3SBarry Smith    Input Parameters:
29421c4f3114SJed Brown +  B - the matrix
2943dfb205c3SBarry Smith .  bs - the block size
2944dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2945dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2946dfb205c3SBarry Smith -  v - optional values in the matrix
2947dfb205c3SBarry Smith 
2948664954b6SBarry Smith    Level: advanced
2949664954b6SBarry Smith 
2950664954b6SBarry Smith    Notes:
29510cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
29520cd7f59aSBarry Smith    and usually the numerical values as well
29530cd7f59aSBarry Smith 
295450c5228eSBarry Smith    Any entries below the diagonal are ignored
2955dfb205c3SBarry Smith 
295669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2957dfb205c3SBarry Smith @*/
29587087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2959dfb205c3SBarry Smith {
29604ac538c5SBarry Smith   PetscErrorCode ierr;
2961dfb205c3SBarry Smith 
2962dfb205c3SBarry Smith   PetscFunctionBegin;
29634ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2964dfb205c3SBarry Smith   PetscFunctionReturn(0);
2965dfb205c3SBarry Smith }
2966dfb205c3SBarry Smith 
296710c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
29684dcd73b1SHong Zhang {
29694dcd73b1SHong Zhang   PetscErrorCode ierr;
297010c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
297110c56fdeSHong Zhang   PetscInt       *indx;
297210c56fdeSHong Zhang   PetscScalar    *values;
2973dfb205c3SBarry Smith 
29744dcd73b1SHong Zhang   PetscFunctionBegin;
29754dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
297610c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
297710c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
2978de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
297910c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
2980de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
29814dcd73b1SHong Zhang 
298210c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
298310c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
298410c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
2985da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
298610c56fdeSHong Zhang     }
2987da91a574SPierre Jolivet     nbs = n/cbs;
29884dcd73b1SHong Zhang 
29894dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
2990de25e9cbSPierre Jolivet     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
2991de25e9cbSPierre Jolivet 
2992de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2993de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr);
2994de25e9cbSPierre Jolivet     if (rank == size-1) {
2995de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
2996de25e9cbSPierre Jolivet       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
2997de25e9cbSPierre Jolivet     }
2998de25e9cbSPierre Jolivet 
2999de25e9cbSPierre Jolivet     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
3000e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
300110c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
30024dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
30034dcd73b1SHong Zhang       nnz  = nnz/bs;
30044dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
30054dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
30064dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
30074dcd73b1SHong Zhang     }
3008e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
30094dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
30104dcd73b1SHong Zhang 
30114dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
3012de25e9cbSPierre Jolivet     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
30134dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
3014ce94fc41SPierre Jolivet     ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr);
3015ce94fc41SPierre Jolivet     ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
30164dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
30174dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
30184dcd73b1SHong Zhang   }
30194dcd73b1SHong Zhang 
302010c56fdeSHong Zhang   /* numeric phase */
30214dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
302210c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
30234dcd73b1SHong Zhang 
3024e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
30254dcd73b1SHong Zhang   for (i=0; i<m; i++) {
30264dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
30274dcd73b1SHong Zhang     Ii   = i + rstart;
302810c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
30294dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
30304dcd73b1SHong Zhang   }
3031e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
303210c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
303310c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
30344dcd73b1SHong Zhang   PetscFunctionReturn(0);
30354dcd73b1SHong Zhang }
3036