xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision d70f29a362ae60d541be4e9a72e9494be00f9e3d)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*);
12d24d4204SJose E. Roman #endif
13b147fbf3SStefano Zampini 
14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
16b147fbf3SStefano Zampini {
17b147fbf3SStefano Zampini   Mat            preallocator;
18b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
19b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
20b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
21b147fbf3SStefano Zampini   PetscErrorCode ierr;
22b147fbf3SStefano Zampini 
23b147fbf3SStefano Zampini   PetscFunctionBegin;
24b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
25b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
26b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
27b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
28b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
292c71b3e2SJacob Faibussowitsch     PetscCheckFalse(!cong,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
30b147fbf3SStefano Zampini   }
31b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
32b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
39b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
40b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
41b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
42b147fbf3SStefano Zampini     PetscInt          ncols;
43b147fbf3SStefano Zampini     const PetscInt    *row;
44b147fbf3SStefano Zampini     const PetscScalar *vals;
45b147fbf3SStefano Zampini 
46b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
47b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
49b147fbf3SStefano Zampini       if (symm && symm[i]) {
50b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
51b147fbf3SStefano Zampini       }
52b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
53b147fbf3SStefano Zampini     }
54b147fbf3SStefano Zampini   }
55b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
57b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
58b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
59b147fbf3SStefano Zampini   PetscFunctionReturn(0);
60b147fbf3SStefano Zampini }
61b147fbf3SStefano Zampini 
6228d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
63b147fbf3SStefano Zampini {
64b147fbf3SStefano Zampini   Mat            B;
65b147fbf3SStefano Zampini   PetscErrorCode ierr;
66b147fbf3SStefano Zampini   PetscInt       r;
67b147fbf3SStefano Zampini 
68b147fbf3SStefano Zampini   PetscFunctionBegin;
69b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
7028d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE,isdense;
71b147fbf3SStefano Zampini     PetscInt  bs;
72b147fbf3SStefano Zampini 
73b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
77b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
78b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
79b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
8028d58a37SPierre Jolivet     ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
8128d58a37SPierre Jolivet     if (!isdense) {
82b147fbf3SStefano Zampini       ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
83b147fbf3SStefano Zampini       ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
84b147fbf3SStefano Zampini       ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
8528d58a37SPierre Jolivet     } else {
8628d58a37SPierre Jolivet       ierr = MatSetUp(B);CHKERRQ(ierr);
8728d58a37SPierre Jolivet     }
8828d58a37SPierre Jolivet   } else {
8928d58a37SPierre Jolivet     B    = *newmat;
9028d58a37SPierre Jolivet     ierr = MatZeroEntries(B);CHKERRQ(ierr);
9128d58a37SPierre Jolivet   }
92b147fbf3SStefano Zampini 
93b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
94b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
95b147fbf3SStefano Zampini     PetscInt          ncols;
96b147fbf3SStefano Zampini     const PetscInt    *row;
97b147fbf3SStefano Zampini     const PetscScalar *vals;
98b147fbf3SStefano Zampini 
99b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
100b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
101eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
102eb1ec7c1SStefano Zampini     if (A->hermitian) {
103eb1ec7c1SStefano Zampini       PetscInt i;
104eb1ec7c1SStefano Zampini       for (i = 0; i < ncols; i++) {
105eb1ec7c1SStefano Zampini         ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr);
106eb1ec7c1SStefano Zampini       }
107eb1ec7c1SStefano Zampini     } else {
108b147fbf3SStefano Zampini       ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
109eb1ec7c1SStefano Zampini     }
110eb1ec7c1SStefano Zampini #else
111eb1ec7c1SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
112eb1ec7c1SStefano Zampini #endif
113b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
114b147fbf3SStefano Zampini   }
115b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
116b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
117b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
118b147fbf3SStefano Zampini 
119b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
120b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
121b147fbf3SStefano Zampini   } else {
122b147fbf3SStefano Zampini     *newmat = B;
123b147fbf3SStefano Zampini   }
124b147fbf3SStefano Zampini   PetscFunctionReturn(0);
125b147fbf3SStefano Zampini }
126b147fbf3SStefano Zampini 
1277087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
128a30f8f8cSSatish Balay {
129f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
130dfbe8321SBarry Smith   PetscErrorCode ierr;
131a30f8f8cSSatish Balay 
132a30f8f8cSSatish Balay   PetscFunctionBegin;
133a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
134a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
135a30f8f8cSSatish Balay   PetscFunctionReturn(0);
136a30f8f8cSSatish Balay }
137a30f8f8cSSatish Balay 
1387087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
139a30f8f8cSSatish Balay {
140f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
142a30f8f8cSSatish Balay 
143a30f8f8cSSatish Balay   PetscFunctionBegin;
144a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
145a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
146a30f8f8cSSatish Balay   PetscFunctionReturn(0);
147a30f8f8cSSatish Balay }
148a30f8f8cSSatish Balay 
149d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
150a30f8f8cSSatish Balay   { \
151a30f8f8cSSatish Balay     brow = row/bs;  \
152a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
153a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
154a30f8f8cSSatish Balay     bcol = col/bs; \
155a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
156a30f8f8cSSatish Balay     low  = 0; high = nrow; \
157a30f8f8cSSatish Balay     while (high-low > 3) { \
158a30f8f8cSSatish Balay       t = (low+high)/2; \
159a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
160a30f8f8cSSatish Balay       else              low  = t; \
161a30f8f8cSSatish Balay     } \
162a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
163a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
164a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
165a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
166a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
167a30f8f8cSSatish Balay         else                    *bap  = value;  \
168a30f8f8cSSatish Balay         goto a_noinsert; \
169a30f8f8cSSatish Balay       } \
170a30f8f8cSSatish Balay     } \
171a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
1722c71b3e2SJacob Faibussowitsch     PetscCheckFalse(a->nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
173fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
174a30f8f8cSSatish Balay     N = nrow++ - 1;  \
175a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
176580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
177580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
178580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
179a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
180a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
181e56f5c9eSBarry Smith     A->nonzerostate++;\
182a30f8f8cSSatish Balay a_noinsert:; \
183a30f8f8cSSatish Balay     ailen[brow] = nrow; \
184a30f8f8cSSatish Balay   }
185e5e170daSBarry Smith 
186d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
187a30f8f8cSSatish Balay   { \
188a30f8f8cSSatish Balay     brow = row/bs;  \
189a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
190a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
191a30f8f8cSSatish Balay     bcol = col/bs; \
192a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
193a30f8f8cSSatish Balay     low  = 0; high = nrow; \
194a30f8f8cSSatish Balay     while (high-low > 3) { \
195a30f8f8cSSatish Balay       t = (low+high)/2; \
196a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
197a30f8f8cSSatish Balay       else              low  = t; \
198a30f8f8cSSatish Balay     } \
199a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
200a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
201a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
202a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
203a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
204a30f8f8cSSatish Balay         else                    *bap  = value;  \
205a30f8f8cSSatish Balay         goto b_noinsert; \
206a30f8f8cSSatish Balay       } \
207a30f8f8cSSatish Balay     } \
208a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2092c71b3e2SJacob Faibussowitsch     PetscCheckFalse(b->nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
210fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
211a30f8f8cSSatish Balay     N = nrow++ - 1;  \
212a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
213580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
214580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
215580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \
216a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
217a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
218e56f5c9eSBarry Smith     B->nonzerostate++;\
219a30f8f8cSSatish Balay b_noinsert:; \
220a30f8f8cSSatish Balay     bilen[brow] = nrow; \
221a30f8f8cSSatish Balay   }
222a30f8f8cSSatish Balay 
223a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
224476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
225a30f8f8cSSatish Balay */
226dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
227a30f8f8cSSatish Balay {
228a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
229a30f8f8cSSatish Balay   MatScalar      value;
230ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
231dfbe8321SBarry Smith   PetscErrorCode ierr;
2321302d50aSBarry Smith   PetscInt       i,j,row,col;
233d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
234d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
235d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
236a30f8f8cSSatish Balay 
237a30f8f8cSSatish Balay   /* Some Variables required in the macro */
238a30f8f8cSSatish Balay   Mat          A     = baij->A;
239a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2401302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
241a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
242a30f8f8cSSatish Balay 
243a30f8f8cSSatish Balay   Mat         B     = baij->B;
244a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2451302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
246a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
247a30f8f8cSSatish Balay 
2481302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2491302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
250a30f8f8cSSatish Balay   MatScalar *ap,*bap;
251a30f8f8cSSatish Balay 
252a30f8f8cSSatish Balay   /* for stash */
2530298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2540298fd71SBarry Smith   MatScalar *v_loc = NULL;
255a30f8f8cSSatish Balay 
256a30f8f8cSSatish Balay   PetscFunctionBegin;
257a30f8f8cSSatish Balay   if (!baij->donotstash) {
25859ffdab8SBarry Smith     if (n > baij->n_loc) {
25959ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
26059ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
261785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
262785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
26326fbe8dcSKarl Rupp 
26459ffdab8SBarry Smith       baij->n_loc = n;
26559ffdab8SBarry Smith     }
26659ffdab8SBarry Smith     in_loc = baij->in_loc;
26759ffdab8SBarry Smith     v_loc  = baij->v_loc;
268a30f8f8cSSatish Balay   }
269a30f8f8cSSatish Balay 
270a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
271a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2722c71b3e2SJacob Faibussowitsch     PetscCheckFalse(im[i] >= mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
273a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
274a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
275a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
27601b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
27701b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27801b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
27926fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
28001b2bd88SHong Zhang         }
281a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
282a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
283a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
284a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
285db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
286db4deed7SKarl Rupp           else             value = v[i+j*m];
287d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
288a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
289a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2902c71b3e2SJacob Faibussowitsch         else PetscCheckFalse(in[j] >= mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1);
291a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
292a30f8f8cSSatish Balay           if (mat->was_assembled) {
293a30f8f8cSSatish Balay             if (!baij->colmap) {
294ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
295a30f8f8cSSatish Balay             }
296a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
297a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
29871730473SSatish Balay             col  = col - 1;
299a30f8f8cSSatish Balay #else
30071730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
301a30f8f8cSSatish Balay #endif
302a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
303ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
304a30f8f8cSSatish Balay               col  =  in[j];
305a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
306a30f8f8cSSatish Balay               B    = baij->B;
307a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
308a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
309a30f8f8cSSatish Balay               ba   = b->a;
31071730473SSatish Balay             } else col += in[j]%bs;
311a30f8f8cSSatish Balay           } else col = in[j];
312db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
313db4deed7SKarl Rupp           else             value = v[i+j*m];
314d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
315a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
316a30f8f8cSSatish Balay         }
317a30f8f8cSSatish Balay       }
318a30f8f8cSSatish Balay     } else {  /* off processor entry */
3192c71b3e2SJacob Faibussowitsch       PetscCheckFalse(mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
320a30f8f8cSSatish Balay       if (!baij->donotstash) {
3215080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
322a30f8f8cSSatish Balay         n_loc          = 0;
323a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
324f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
325a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
326a30f8f8cSSatish Balay           if (roworiented) {
327a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
328a30f8f8cSSatish Balay           } else {
329a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
330a30f8f8cSSatish Balay           }
331a30f8f8cSSatish Balay           n_loc++;
332a30f8f8cSSatish Balay         }
333b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
334a30f8f8cSSatish Balay       }
335a30f8f8cSSatish Balay     }
336a30f8f8cSSatish Balay   }
337a30f8f8cSSatish Balay   PetscFunctionReturn(0);
338a30f8f8cSSatish Balay }
339a30f8f8cSSatish Balay 
3409fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34136bd2089SBarry Smith {
34236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
34336bd2089SBarry Smith   PetscErrorCode    ierr;
34436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
34636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
34836bd2089SBarry Smith   const PetscScalar *value     = v;
34936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35036bd2089SBarry Smith 
35136bd2089SBarry Smith   PetscFunctionBegin;
35236bd2089SBarry Smith   if (col < row) {
35336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
35436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
35536bd2089SBarry Smith   }
35636bd2089SBarry Smith   rp   = aj + ai[row];
35736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35836bd2089SBarry Smith   rmax = imax[row];
35936bd2089SBarry Smith   nrow = ailen[row];
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   low   = 0;
36236bd2089SBarry Smith   high  = nrow;
36336bd2089SBarry Smith 
36436bd2089SBarry Smith   while (high-low > 7) {
36536bd2089SBarry Smith     t = (low+high)/2;
36636bd2089SBarry Smith     if (rp[t] > col) high = t;
36736bd2089SBarry Smith     else             low  = t;
36836bd2089SBarry Smith   }
36936bd2089SBarry Smith   for (i=low; i<high; i++) {
37036bd2089SBarry Smith     if (rp[i] > col) break;
37136bd2089SBarry Smith     if (rp[i] == col) {
37236bd2089SBarry Smith       bap = ap +  bs2*i;
37336bd2089SBarry Smith       if (roworiented) {
37436bd2089SBarry Smith         if (is == ADD_VALUES) {
37536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37736bd2089SBarry Smith               bap[jj] += *value++;
37836bd2089SBarry Smith             }
37936bd2089SBarry Smith           }
38036bd2089SBarry Smith         } else {
38136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38336bd2089SBarry Smith               bap[jj] = *value++;
38436bd2089SBarry Smith             }
38536bd2089SBarry Smith           }
38636bd2089SBarry Smith         }
38736bd2089SBarry Smith       } else {
38836bd2089SBarry Smith         if (is == ADD_VALUES) {
38936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39136bd2089SBarry Smith               *bap++ += *value++;
39236bd2089SBarry Smith             }
39336bd2089SBarry Smith           }
39436bd2089SBarry Smith         } else {
39536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39736bd2089SBarry Smith               *bap++  = *value++;
39836bd2089SBarry Smith             }
39936bd2089SBarry Smith           }
40036bd2089SBarry Smith         }
40136bd2089SBarry Smith       }
40236bd2089SBarry Smith       goto noinsert2;
40336bd2089SBarry Smith     }
40436bd2089SBarry Smith   }
40536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4062c71b3e2SJacob Faibussowitsch   PetscCheckFalse(nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
40736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40836bd2089SBarry Smith   N = nrow++ - 1; high++;
40936bd2089SBarry Smith   /* shift up all the later entries in this row */
410580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
411580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
41236bd2089SBarry Smith   rp[i] = col;
41336bd2089SBarry Smith   bap   = ap +  bs2*i;
41436bd2089SBarry Smith   if (roworiented) {
41536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41636bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
41736bd2089SBarry Smith         bap[jj] = *value++;
41836bd2089SBarry Smith       }
41936bd2089SBarry Smith     }
42036bd2089SBarry Smith   } else {
42136bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42236bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42336bd2089SBarry Smith         *bap++ = *value++;
42436bd2089SBarry Smith       }
42536bd2089SBarry Smith     }
42636bd2089SBarry Smith   }
42736bd2089SBarry Smith   noinsert2:;
42836bd2089SBarry Smith   ailen[row] = nrow;
42936bd2089SBarry Smith   PetscFunctionReturn(0);
43036bd2089SBarry Smith }
43136bd2089SBarry Smith 
43236bd2089SBarry Smith /*
43336bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
43436bd2089SBarry Smith */
4359fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
43636bd2089SBarry Smith {
43736bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
43836bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
43936bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
44036bd2089SBarry Smith   PetscErrorCode    ierr;
44136bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
44236bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
44336bd2089SBarry Smith   const PetscScalar *value     = v;
44436bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
44536bd2089SBarry Smith 
44636bd2089SBarry Smith   PetscFunctionBegin;
44736bd2089SBarry Smith   rp   = aj + ai[row];
44836bd2089SBarry Smith   ap   = aa + bs2*ai[row];
44936bd2089SBarry Smith   rmax = imax[row];
45036bd2089SBarry Smith   nrow = ailen[row];
45136bd2089SBarry Smith   low  = 0;
45236bd2089SBarry Smith   high = nrow;
45336bd2089SBarry Smith   value = v;
45436bd2089SBarry Smith   while (high-low > 7) {
45536bd2089SBarry Smith     t = (low+high)/2;
45636bd2089SBarry Smith     if (rp[t] > col) high = t;
45736bd2089SBarry Smith     else             low  = t;
45836bd2089SBarry Smith   }
45936bd2089SBarry Smith   for (i=low; i<high; i++) {
46036bd2089SBarry Smith     if (rp[i] > col) break;
46136bd2089SBarry Smith     if (rp[i] == col) {
46236bd2089SBarry Smith       bap = ap +  bs2*i;
46336bd2089SBarry Smith       if (roworiented) {
46436bd2089SBarry Smith         if (is == ADD_VALUES) {
46536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46736bd2089SBarry Smith               bap[jj] += *value++;
46836bd2089SBarry Smith             }
46936bd2089SBarry Smith           }
47036bd2089SBarry Smith         } else {
47136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
47236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
47336bd2089SBarry Smith               bap[jj] = *value++;
47436bd2089SBarry Smith             }
47536bd2089SBarry Smith           }
47636bd2089SBarry Smith         }
47736bd2089SBarry Smith       } else {
47836bd2089SBarry Smith         if (is == ADD_VALUES) {
47936bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48136bd2089SBarry Smith               bap[jj] += value[jj];
48236bd2089SBarry Smith             }
48336bd2089SBarry Smith             bap += bs;
48436bd2089SBarry Smith           }
48536bd2089SBarry Smith         } else {
48636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48836bd2089SBarry Smith               bap[jj]  = value[jj];
48936bd2089SBarry Smith             }
49036bd2089SBarry Smith             bap += bs;
49136bd2089SBarry Smith           }
49236bd2089SBarry Smith         }
49336bd2089SBarry Smith       }
49436bd2089SBarry Smith       goto noinsert2;
49536bd2089SBarry Smith     }
49636bd2089SBarry Smith   }
49736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4982c71b3e2SJacob Faibussowitsch   PetscCheckFalse(nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
49936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
50036bd2089SBarry Smith   N = nrow++ - 1; high++;
50136bd2089SBarry Smith   /* shift up all the later entries in this row */
502580bdb30SBarry Smith   ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
503580bdb30SBarry Smith   ierr  = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
50436bd2089SBarry Smith   rp[i] = col;
50536bd2089SBarry Smith   bap   = ap +  bs2*i;
50636bd2089SBarry Smith   if (roworiented) {
50736bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50836bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
50936bd2089SBarry Smith         bap[jj] = *value++;
51036bd2089SBarry Smith       }
51136bd2089SBarry Smith     }
51236bd2089SBarry Smith   } else {
51336bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
51436bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
51536bd2089SBarry Smith         *bap++ = *value++;
51636bd2089SBarry Smith       }
51736bd2089SBarry Smith     }
51836bd2089SBarry Smith   }
51936bd2089SBarry Smith   noinsert2:;
52036bd2089SBarry Smith   ailen[row] = nrow;
52136bd2089SBarry Smith   PetscFunctionReturn(0);
52236bd2089SBarry Smith }
52336bd2089SBarry Smith 
52436bd2089SBarry Smith /*
52536bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
52636bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
52736bd2089SBarry Smith */
528dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
529a30f8f8cSSatish Balay {
5300880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
531f15d580aSBarry Smith   const MatScalar *value;
532f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
533ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
534dfbe8321SBarry Smith   PetscErrorCode  ierr;
535899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
536476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
537476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5380880e062SHong Zhang 
539a30f8f8cSSatish Balay   PetscFunctionBegin;
5400880e062SHong Zhang   if (!barray) {
541785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5420880e062SHong Zhang     baij->barray = barray;
5430880e062SHong Zhang   }
5440880e062SHong Zhang 
5450880e062SHong Zhang   if (roworiented) {
5460880e062SHong Zhang     stepval = (n-1)*bs;
5470880e062SHong Zhang   } else {
5480880e062SHong Zhang     stepval = (m-1)*bs;
5490880e062SHong Zhang   }
5500880e062SHong Zhang   for (i=0; i<m; i++) {
5510880e062SHong Zhang     if (im[i] < 0) continue;
5526bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
5530880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5540880e062SHong Zhang       row = im[i] - rstart;
5550880e062SHong Zhang       for (j=0; j<n; j++) {
556f3f98c53SJed Brown         if (im[i] > in[j]) {
557f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
558e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
559f3f98c53SJed Brown         }
5600880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5610880e062SHong Zhang         if ((roworiented) && (n == 1)) {
562f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5630880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
564f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5650880e062SHong Zhang         } else { /* Here a copy is required */
5660880e062SHong Zhang           if (roworiented) {
5670880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5680880e062SHong Zhang           } else {
5690880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5700880e062SHong Zhang           }
5710880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5720880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5730880e062SHong Zhang               *barray++ = *value++;
5740880e062SHong Zhang             }
5750880e062SHong Zhang           }
5760880e062SHong Zhang           barray -=bs2;
5770880e062SHong Zhang         }
5780880e062SHong Zhang 
5790880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5800880e062SHong Zhang           col  = in[j] - cstart;
58136bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
58226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
5836bdcaf15SBarry Smith         else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1);
5840880e062SHong Zhang         else {
5850880e062SHong Zhang           if (mat->was_assembled) {
5860880e062SHong Zhang             if (!baij->colmap) {
587ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5880880e062SHong Zhang             }
5890880e062SHong Zhang 
5902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5910880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5921302d50aSBarry Smith             { PetscInt data;
5930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
5942c71b3e2SJacob Faibussowitsch               PetscCheckFalse((data - 1) % bs,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5950880e062SHong Zhang             }
5960880e062SHong Zhang #else
5972c71b3e2SJacob Faibussowitsch             PetscCheckFalse((baij->colmap[in[j]] - 1) % bs,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5980880e062SHong Zhang #endif
5990880e062SHong Zhang #endif
6000880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
6010880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
6020880e062SHong Zhang             col  = (col - 1)/bs;
6030880e062SHong Zhang #else
6040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
6050880e062SHong Zhang #endif
6060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
607ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
6080880e062SHong Zhang               col  = in[j];
6090880e062SHong Zhang             }
61026fbe8dcSKarl Rupp           } else col = in[j];
61136bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
6120880e062SHong Zhang         }
6130880e062SHong Zhang       }
6140880e062SHong Zhang     } else {
6152c71b3e2SJacob Faibussowitsch       PetscCheckFalse(mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6160880e062SHong Zhang       if (!baij->donotstash) {
6170880e062SHong Zhang         if (roworiented) {
6180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6190880e062SHong Zhang         } else {
6200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6210880e062SHong Zhang         }
6220880e062SHong Zhang       }
6230880e062SHong Zhang     }
6240880e062SHong Zhang   }
6250880e062SHong Zhang   PetscFunctionReturn(0);
626a30f8f8cSSatish Balay }
627a30f8f8cSSatish Balay 
6281302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
629a30f8f8cSSatish Balay {
630f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6316849ba73SBarry Smith   PetscErrorCode ierr;
632d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
633d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay   PetscFunctionBegin;
636a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
63754c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
63854c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1);
639a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
640a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
641a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
64254c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
64354c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1);
644a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
645a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
646c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647a30f8f8cSSatish Balay         } else {
648a30f8f8cSSatish Balay           if (!baij->colmap) {
649ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
650a30f8f8cSSatish Balay           }
651a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
652a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
653a30f8f8cSSatish Balay           data--;
654a30f8f8cSSatish Balay #else
655a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
656a30f8f8cSSatish Balay #endif
657a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
658a30f8f8cSSatish Balay           else {
659a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
660e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
661a30f8f8cSSatish Balay           }
662a30f8f8cSSatish Balay         }
663a30f8f8cSSatish Balay       }
664f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
665a30f8f8cSSatish Balay   }
666a30f8f8cSSatish Balay   PetscFunctionReturn(0);
667a30f8f8cSSatish Balay }
668a30f8f8cSSatish Balay 
669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
670a30f8f8cSSatish Balay {
671a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
672dfbe8321SBarry Smith   PetscErrorCode ierr;
673a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay   PetscFunctionBegin;
676a30f8f8cSSatish Balay   if (baij->size == 1) {
677a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
678a30f8f8cSSatish Balay   } else {
679a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
680785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
681a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
682a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
683a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
684a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
685820f2d46SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRMPI(ierr);
6868f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
687a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6880b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6890b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6900b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6910b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
692899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
693d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6940b8dc8d2SHong Zhang       MatScalar    *v;
6950b8dc8d2SHong Zhang 
696dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
697580bdb30SBarry Smith       ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr);
6980b8dc8d2SHong Zhang       /* Amat */
6990b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
7000b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7010b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7020b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
7030b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7040b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
7050b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7060b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7070b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7080b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7090b8dc8d2SHong Zhang               /* non-diagonal block */
7100b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7110b8dc8d2SHong Zhang             }
7120b8dc8d2SHong Zhang           }
7130b8dc8d2SHong Zhang         }
71451f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7150b8dc8d2SHong Zhang       }
7160b8dc8d2SHong Zhang       /* Bmat */
7170b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7180b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7190b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7200b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7210b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7220b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7230b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7240b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7250b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7260b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7270b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7280b8dc8d2SHong Zhang             }
7290b8dc8d2SHong Zhang           }
7300b8dc8d2SHong Zhang         }
73151f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7320b8dc8d2SHong Zhang       }
733820f2d46SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRMPI(ierr);
7340b8dc8d2SHong Zhang       *norm = 0.0;
735d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7360b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7370b8dc8d2SHong Zhang       }
73874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
739f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
740a30f8f8cSSatish Balay   }
741a30f8f8cSSatish Balay   PetscFunctionReturn(0);
742a30f8f8cSSatish Balay }
743a30f8f8cSSatish Balay 
744dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
745a30f8f8cSSatish Balay {
746a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
747dfbe8321SBarry Smith   PetscErrorCode ierr;
7481302d50aSBarry Smith   PetscInt       nstash,reallocs;
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   PetscFunctionBegin;
75126fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
752a30f8f8cSSatish Balay 
753d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7541e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7567d3de750SJacob Faibussowitsch   ierr = PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7587d3de750SJacob Faibussowitsch   ierr = PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
759a30f8f8cSSatish Balay   PetscFunctionReturn(0);
760a30f8f8cSSatish Balay }
761a30f8f8cSSatish Balay 
762dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
763a30f8f8cSSatish Balay {
764a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
765a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7666849ba73SBarry Smith   PetscErrorCode ierr;
76713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
768e44c0bd4SBarry Smith   PetscInt       *row,*col;
769ace3abfcSBarry Smith   PetscBool      other_disassembled;
77013f74950SBarry Smith   PetscMPIInt    n;
771ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
772a30f8f8cSSatish Balay   MatScalar      *val;
773a30f8f8cSSatish Balay 
77491c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
775a30f8f8cSSatish Balay   PetscFunctionBegin;
7764cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
777a30f8f8cSSatish Balay     while (1) {
778a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
779a30f8f8cSSatish Balay       if (!flg) break;
780a30f8f8cSSatish Balay 
781a30f8f8cSSatish Balay       for (i=0; i<n;) {
782a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
78326fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
78426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
78526fbe8dcSKarl Rupp         }
786a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
787a30f8f8cSSatish Balay         else       ncols = n-i;
788a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7894b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
790a30f8f8cSSatish Balay         i    = j;
791a30f8f8cSSatish Balay       }
792a30f8f8cSSatish Balay     }
793a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
794a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
795a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
796a30f8f8cSSatish Balay        restore the original flags */
797a30f8f8cSSatish Balay     r1 = baij->roworiented;
798a30f8f8cSSatish Balay     r2 = a->roworiented;
79991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
80026fbe8dcSKarl Rupp 
801a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
802a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
80326fbe8dcSKarl Rupp 
80491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
805a30f8f8cSSatish Balay     while (1) {
806a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
807a30f8f8cSSatish Balay       if (!flg) break;
808a30f8f8cSSatish Balay 
809a30f8f8cSSatish Balay       for (i=0; i<n;) {
810a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
81126fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
81226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
81326fbe8dcSKarl Rupp         }
814a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
815a30f8f8cSSatish Balay         else       ncols = n-i;
8164b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
817a30f8f8cSSatish Balay         i    = j;
818a30f8f8cSSatish Balay       }
819a30f8f8cSSatish Balay     }
820a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
82126fbe8dcSKarl Rupp 
822a30f8f8cSSatish Balay     baij->roworiented = r1;
823a30f8f8cSSatish Balay     a->roworiented    = r2;
82426fbe8dcSKarl Rupp 
82591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
826a30f8f8cSSatish Balay   }
827a30f8f8cSSatish Balay 
828a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
829a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
832a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
833a30f8f8cSSatish Balay   /*
834a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
835a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
836a30f8f8cSSatish Balay   */
837a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
838820f2d46SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRMPI(ierr);
839a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
840ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
841a30f8f8cSSatish Balay     }
842a30f8f8cSSatish Balay   }
843a30f8f8cSSatish Balay 
844a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
84540781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
846a30f8f8cSSatish Balay   }
847a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
848a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
849a30f8f8cSSatish Balay 
85074ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
85126fbe8dcSKarl Rupp 
852f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8534f9cfa9eSBarry Smith 
8544f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8554f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
856e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
857820f2d46SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRMPI(ierr);
858e56f5c9eSBarry Smith   }
859a30f8f8cSSatish Balay   PetscFunctionReturn(0);
860a30f8f8cSSatish Balay }
861a30f8f8cSSatish Balay 
862dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8639804daf3SBarry Smith #include <petscdraw.h>
8646849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
865a30f8f8cSSatish Balay {
866a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
867dfbe8321SBarry Smith   PetscErrorCode    ierr;
868d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8697da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
870ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
871b0a32e0cSBarry Smith   PetscViewer       sviewer;
872f3ef73ceSBarry Smith   PetscViewerFormat format;
873a30f8f8cSSatish Balay 
874a30f8f8cSSatish Balay   PetscFunctionBegin;
875251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
876251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
87732077d6dSBarry Smith   if (iascii) {
878b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
879456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
880a30f8f8cSSatish Balay       MatInfo info;
881ffc4695bSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr);
882a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8831575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
884c0aa6a63SJacob Faibussowitsch       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
885a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
886c0aa6a63SJacob Faibussowitsch       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
887a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
888c0aa6a63SJacob Faibussowitsch       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
889b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8901575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
89107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
892a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
893a30f8f8cSSatish Balay       PetscFunctionReturn(0);
894fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
895c0aa6a63SJacob Faibussowitsch       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %" PetscInt_FMT "\n",bs);CHKERRQ(ierr);
896a30f8f8cSSatish Balay       PetscFunctionReturn(0);
897c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
898c1490034SHong Zhang       PetscFunctionReturn(0);
899a30f8f8cSSatish Balay     }
900a30f8f8cSSatish Balay   }
901a30f8f8cSSatish Balay 
902a30f8f8cSSatish Balay   if (isdraw) {
903b0a32e0cSBarry Smith     PetscDraw draw;
904ace3abfcSBarry Smith     PetscBool isnull;
905b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
90645f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
90745f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
908a30f8f8cSSatish Balay   }
909a30f8f8cSSatish Balay 
9107da1fb6eSBarry Smith   {
911a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
912a30f8f8cSSatish Balay     Mat          A;
91365d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
91465d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
915d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
916a30f8f8cSSatish Balay     MatScalar    *a;
9173e219373SBarry Smith     const char   *matname;
918a30f8f8cSSatish Balay 
919f204ca49SKris Buschelman     /* Should this be the same type as mat? */
920ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
921dd400576SPatrick Sanan     if (rank == 0) {
922f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
923a30f8f8cSSatish Balay     } else {
924f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
925a30f8f8cSSatish Balay     }
926f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9270298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9282b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9293bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
930a30f8f8cSSatish Balay 
931a30f8f8cSSatish Balay     /* copy over the A part */
93265d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
933a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
934785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
937e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
93826fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
939a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
940e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
941a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
942dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
94326fbe8dcSKarl Rupp           col++;
94426fbe8dcSKarl Rupp           a += bs;
945a30f8f8cSSatish Balay         }
946a30f8f8cSSatish Balay       }
947a30f8f8cSSatish Balay     }
948a30f8f8cSSatish Balay     /* copy over the B part */
94965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
95065d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
951a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
952e9f7bc9eSHong Zhang 
953e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
95426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
955a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
956a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
957a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
958799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
95926fbe8dcSKarl Rupp           col++;
96026fbe8dcSKarl Rupp           a += bs;
961a30f8f8cSSatish Balay         }
962a30f8f8cSSatish Balay       }
963a30f8f8cSSatish Balay     }
964a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
965a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
966a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
967a30f8f8cSSatish Balay     /*
968a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
969b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
970a30f8f8cSSatish Balay     */
9713f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
972ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
973dd400576SPatrick Sanan     if (rank == 0) {
974ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
975383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
976a30f8f8cSSatish Balay     }
9773f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9781575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9796bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
980a30f8f8cSSatish Balay   }
981a30f8f8cSSatish Balay   PetscFunctionReturn(0);
982a30f8f8cSSatish Balay }
983a30f8f8cSSatish Balay 
984618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
985618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
986d1654148SHong Zhang 
987dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
988a30f8f8cSSatish Balay {
989dfbe8321SBarry Smith   PetscErrorCode ierr;
990ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
991a30f8f8cSSatish Balay 
992a30f8f8cSSatish Balay   PetscFunctionBegin;
993251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
994251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
995251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
996251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
997d1654148SHong Zhang   if (iascii || isdraw || issocket) {
998a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
999d1654148SHong Zhang   } else if (isbinary) {
1000d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1001a30f8f8cSSatish Balay   }
1002a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1003a30f8f8cSSatish Balay }
1004a30f8f8cSSatish Balay 
1005dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1006a30f8f8cSSatish Balay {
1007a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1008dfbe8321SBarry Smith   PetscErrorCode ierr;
1009a30f8f8cSSatish Balay 
1010a30f8f8cSSatish Balay   PetscFunctionBegin;
1011a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1012c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N);
1013a30f8f8cSSatish Balay #endif
1014a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1015a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
10166bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
10176bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1018a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
10196bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1020a30f8f8cSSatish Balay #else
102105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1022a30f8f8cSSatish Balay #endif
102305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
10246bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
10256bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
10266bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
10276bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
10286bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
10296bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
10306bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
10316bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
10325755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
103305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
103405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
10356bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
10366bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
10376bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1038ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
103905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1040a30f8f8cSSatish Balay #endif
104159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
104259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1043899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1044bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1045901853e0SKris Buschelman 
1046f4259b30SLisandro Dalcin   ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr);
1047bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1048bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1049bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1050d2c30c80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
10516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
10526214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
10536214f412SHong Zhang #endif
1054d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
1055d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL);CHKERRQ(ierr);
1056d24d4204SJose E. Roman #endif
1057b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1058b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1059a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1060a30f8f8cSSatish Balay }
1061a30f8f8cSSatish Balay 
1062547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1063547795f9SHong Zhang {
1064547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1065547795f9SHong Zhang   PetscErrorCode    ierr;
1066eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
10676de40e93SBarry Smith   PetscScalar       *from;
10686de40e93SBarry Smith   const PetscScalar *x;
1069547795f9SHong Zhang 
1070547795f9SHong Zhang   PetscFunctionBegin;
1071547795f9SHong Zhang   /* diagonal part */
1072547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1073547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1074547795f9SHong Zhang 
1075547795f9SHong Zhang   /* subdiagonal part */
10762c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name);
1077547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1078547795f9SHong Zhang 
1079547795f9SHong Zhang   /* copy x into the vec slvec0 */
1080547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10816de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1082547795f9SHong Zhang 
1083580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1084547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
10856de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1086547795f9SHong Zhang 
1087547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1088547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1089547795f9SHong Zhang   /* supperdiagonal part */
1090547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1091547795f9SHong Zhang   PetscFunctionReturn(0);
1092547795f9SHong Zhang }
1093547795f9SHong Zhang 
1094dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1095a9d4b620SHong Zhang {
1096a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1097dfbe8321SBarry Smith   PetscErrorCode    ierr;
1098eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1099d9ca1df4SBarry Smith   PetscScalar       *from;
1100d9ca1df4SBarry Smith   const PetscScalar *x;
1101a9d4b620SHong Zhang 
1102a9d4b620SHong Zhang   PetscFunctionBegin;
1103a9d4b620SHong Zhang   /* diagonal part */
1104a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1105fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1106a9d4b620SHong Zhang 
1107a9d4b620SHong Zhang   /* subdiagonal part */
1108a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1109fc165ae2SBarry Smith 
1110a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11111ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1112d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1113a9d4b620SHong Zhang 
1114580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1115fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1116d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1117fc165ae2SBarry Smith 
1118fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1119ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1120a9d4b620SHong Zhang   /* supperdiagonal part */
1121a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1122a9d4b620SHong Zhang   PetscFunctionReturn(0);
1123a9d4b620SHong Zhang }
1124a9d4b620SHong Zhang 
1125eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz)
1126eb1ec7c1SStefano Zampini {
1127eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1128eb1ec7c1SStefano Zampini   PetscErrorCode    ierr;
1129eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1130eb1ec7c1SStefano Zampini   PetscScalar       *from,zero=0.0;
1131eb1ec7c1SStefano Zampini   const PetscScalar *x;
1132eb1ec7c1SStefano Zampini 
1133eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1134eb1ec7c1SStefano Zampini   /* diagonal part */
1135eb1ec7c1SStefano Zampini   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1136eb1ec7c1SStefano Zampini   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1137eb1ec7c1SStefano Zampini 
1138eb1ec7c1SStefano Zampini   /* subdiagonal part */
11392c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name);
1140eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1141eb1ec7c1SStefano Zampini 
1142eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
1143eb1ec7c1SStefano Zampini   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1144eb1ec7c1SStefano Zampini   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1145eb1ec7c1SStefano Zampini   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1146eb1ec7c1SStefano Zampini   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1147eb1ec7c1SStefano Zampini 
1148eb1ec7c1SStefano Zampini   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1149eb1ec7c1SStefano Zampini   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1150eb1ec7c1SStefano Zampini   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1151eb1ec7c1SStefano Zampini 
1152eb1ec7c1SStefano Zampini   /* supperdiagonal part */
1153eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1154eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1155eb1ec7c1SStefano Zampini }
1156eb1ec7c1SStefano Zampini 
1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1158a30f8f8cSSatish Balay {
1159de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1160dfbe8321SBarry Smith   PetscErrorCode    ierr;
1161d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1162d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1163d9ca1df4SBarry Smith   const PetscScalar *x;
1164a9d4b620SHong Zhang 
1165a9d4b620SHong Zhang   PetscFunctionBegin;
1166a9d4b620SHong Zhang   /* diagonal part */
1167a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11682dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1169a9d4b620SHong Zhang 
1170a9d4b620SHong Zhang   /* subdiagonal part */
1171a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1172a9d4b620SHong Zhang 
1173a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11741ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1175d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1176580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
11771ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1178a9d4b620SHong Zhang 
1179ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1180d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1181ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1182a9d4b620SHong Zhang 
1183a9d4b620SHong Zhang   /* supperdiagonal part */
1184a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1185a9d4b620SHong Zhang   PetscFunctionReturn(0);
1186a9d4b620SHong Zhang }
1187a9d4b620SHong Zhang 
1188a30f8f8cSSatish Balay /*
1189a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1190a30f8f8cSSatish Balay    diagonal block
1191a30f8f8cSSatish Balay */
1192dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1193a30f8f8cSSatish Balay {
1194a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1195dfbe8321SBarry Smith   PetscErrorCode ierr;
1196a30f8f8cSSatish Balay 
1197a30f8f8cSSatish Balay   PetscFunctionBegin;
11982c71b3e2SJacob Faibussowitsch   /* PetscCheckFalse(a->rmap->N != a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1199a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1201a30f8f8cSSatish Balay }
1202a30f8f8cSSatish Balay 
1203f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1204a30f8f8cSSatish Balay {
1205a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1206dfbe8321SBarry Smith   PetscErrorCode ierr;
1207a30f8f8cSSatish Balay 
1208a30f8f8cSSatish Balay   PetscFunctionBegin;
1209f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1210f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1211a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1212a30f8f8cSSatish Balay }
1213a30f8f8cSSatish Balay 
12141302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1215a30f8f8cSSatish Balay {
1216d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1217d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1218d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1219d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1220d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1221899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1222d0d4cfc2SHong Zhang 
1223a30f8f8cSSatish Balay   PetscFunctionBegin;
12242c71b3e2SJacob Faibussowitsch   PetscCheckFalse(mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1225d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1226d0d4cfc2SHong Zhang 
1227d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1228d0d4cfc2SHong Zhang     /*
1229d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1230d0d4cfc2SHong Zhang     */
1231d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1232d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1233d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1234d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1235d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
123626fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1237d0d4cfc2SHong Zhang     }
1238dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1239d0d4cfc2SHong Zhang   }
1240d0d4cfc2SHong Zhang 
12412c71b3e2SJacob Faibussowitsch   PetscCheckFalse(row < brstart || row >= brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1242d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1243d0d4cfc2SHong Zhang 
1244d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1245f4259b30SLisandro Dalcin   if (!v)   {pvA = NULL; pvB = NULL;}
1246f4259b30SLisandro Dalcin   if (!idx) {pcA = NULL; if (!v) pcB = NULL;}
1247d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1248d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1249d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1250d0d4cfc2SHong Zhang 
1251d0d4cfc2SHong Zhang   cmap = mat->garray;
1252d0d4cfc2SHong Zhang   if (v  || idx) {
1253d0d4cfc2SHong Zhang     if (nztot) {
1254d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1255d0d4cfc2SHong Zhang       PetscInt imark = -1;
1256d0d4cfc2SHong Zhang       if (v) {
1257d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1258d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1259d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1260d0d4cfc2SHong Zhang           else break;
1261d0d4cfc2SHong Zhang         }
1262d0d4cfc2SHong Zhang         imark = i;
1263d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1264d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1265d0d4cfc2SHong Zhang       }
1266d0d4cfc2SHong Zhang       if (idx) {
1267d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1268d0d4cfc2SHong Zhang         if (imark > -1) {
1269d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1270d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1271d0d4cfc2SHong Zhang           }
1272d0d4cfc2SHong Zhang         } else {
1273d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
127426fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1275d0d4cfc2SHong Zhang             else break;
1276d0d4cfc2SHong Zhang           }
1277d0d4cfc2SHong Zhang           imark = i;
1278d0d4cfc2SHong Zhang         }
1279d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1280d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1281d0d4cfc2SHong Zhang       }
1282d0d4cfc2SHong Zhang     } else {
1283f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1284f4259b30SLisandro Dalcin       if (v)   *v   = NULL;
1285d0d4cfc2SHong Zhang     }
1286d0d4cfc2SHong Zhang   }
1287d0d4cfc2SHong Zhang   *nz  = nztot;
1288d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1289d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1290a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1291a30f8f8cSSatish Balay }
1292a30f8f8cSSatish Balay 
12931302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1294a30f8f8cSSatish Balay {
1295a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1296a30f8f8cSSatish Balay 
1297a30f8f8cSSatish Balay   PetscFunctionBegin;
12982c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1299a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1300a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1301a30f8f8cSSatish Balay }
1302a30f8f8cSSatish Balay 
1303d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1304d0d4cfc2SHong Zhang {
1305d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1306d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1307d0d4cfc2SHong Zhang 
1308d0d4cfc2SHong Zhang   PetscFunctionBegin;
1309d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1310d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1311d0d4cfc2SHong Zhang }
1312d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1313d0d4cfc2SHong Zhang {
1314d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1315d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1316d0d4cfc2SHong Zhang 
1317d0d4cfc2SHong Zhang   PetscFunctionBegin;
1318d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1319d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1320d0d4cfc2SHong Zhang }
1321d0d4cfc2SHong Zhang 
13222726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
13232726fb6dSPierre Jolivet {
13242726fb6dSPierre Jolivet #if defined(PETSC_USE_COMPLEX)
13252726fb6dSPierre Jolivet   PetscErrorCode ierr;
13262726fb6dSPierre Jolivet   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
13272726fb6dSPierre Jolivet 
13282726fb6dSPierre Jolivet   PetscFunctionBegin;
13292726fb6dSPierre Jolivet   ierr = MatConjugate(a->A);CHKERRQ(ierr);
13302726fb6dSPierre Jolivet   ierr = MatConjugate(a->B);CHKERRQ(ierr);
13312726fb6dSPierre Jolivet #else
13322726fb6dSPierre Jolivet   PetscFunctionBegin;
13332726fb6dSPierre Jolivet #endif
13342726fb6dSPierre Jolivet   PetscFunctionReturn(0);
13352726fb6dSPierre Jolivet }
13362726fb6dSPierre Jolivet 
133799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
133899cafbc1SBarry Smith {
133999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
134099cafbc1SBarry Smith   PetscErrorCode ierr;
134199cafbc1SBarry Smith 
134299cafbc1SBarry Smith   PetscFunctionBegin;
134399cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
134499cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
134599cafbc1SBarry Smith   PetscFunctionReturn(0);
134699cafbc1SBarry Smith }
134799cafbc1SBarry Smith 
134899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
134999cafbc1SBarry Smith {
135099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
135199cafbc1SBarry Smith   PetscErrorCode ierr;
135299cafbc1SBarry Smith 
135399cafbc1SBarry Smith   PetscFunctionBegin;
135499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
135599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
135699cafbc1SBarry Smith   PetscFunctionReturn(0);
135799cafbc1SBarry Smith }
135899cafbc1SBarry Smith 
13597dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
136036032a97SHong Zhang    Input: isrow       - distributed(parallel),
136136032a97SHong Zhang           iscol_local - locally owned (seq)
136236032a97SHong Zhang */
136336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13648f46ffcaSHong Zhang {
13658f46ffcaSHong Zhang   PetscErrorCode ierr;
13668f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13678f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
136836032a97SHong Zhang 
136936032a97SHong Zhang   PetscFunctionBegin;
13708f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13718f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13721098a8e8SHong Zhang   if (sz1 > sz2) {
13731098a8e8SHong Zhang     *flg = PETSC_FALSE;
13741098a8e8SHong Zhang     PetscFunctionReturn(0);
13751098a8e8SHong Zhang   }
13768f46ffcaSHong Zhang 
13778f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13788f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13798f46ffcaSHong Zhang 
13808f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13818f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1382580bdb30SBarry Smith   ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr);
1383580bdb30SBarry Smith   ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr);
13848f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13858f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13868f46ffcaSHong Zhang 
13878f46ffcaSHong Zhang   nmatch=0;
13888f46ffcaSHong Zhang   k     = 0;
13898f46ffcaSHong Zhang   for (i=0; i<sz1; i++) {
13908f46ffcaSHong Zhang     for (j=k; j<sz2; j++) {
13918f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13928f46ffcaSHong Zhang         k = j; nmatch++;
13938f46ffcaSHong Zhang         break;
13948f46ffcaSHong Zhang       }
13958f46ffcaSHong Zhang     }
13968f46ffcaSHong Zhang   }
13978f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13988f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13998f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
14008f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
14011098a8e8SHong Zhang   if (nmatch < sz1) {
14021098a8e8SHong Zhang     *flg = PETSC_FALSE;
14031098a8e8SHong Zhang   } else {
14041098a8e8SHong Zhang     *flg = PETSC_TRUE;
14051098a8e8SHong Zhang   }
140636032a97SHong Zhang   PetscFunctionReturn(0);
14078f46ffcaSHong Zhang }
140836032a97SHong Zhang 
14097dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
141036032a97SHong Zhang {
141136032a97SHong Zhang   PetscErrorCode ierr;
141236032a97SHong Zhang   IS             iscol_local;
141336032a97SHong Zhang   PetscInt       csize;
141436032a97SHong Zhang   PetscBool      isequal;
141536032a97SHong Zhang 
141636032a97SHong Zhang   PetscFunctionBegin;
141736032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
141836032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
141936032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
14202c71b3e2SJacob Faibussowitsch     PetscCheckFalse(!iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
142136032a97SHong Zhang   } else {
1422068661f9SToby Isaac     PetscBool issorted;
1423068661f9SToby Isaac 
142436032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
142536032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
1426068661f9SToby Isaac     ierr = ISSorted(iscol_local, &issorted);CHKERRQ(ierr);
14272c71b3e2SJacob Faibussowitsch     PetscCheckFalse(!isequal || !issorted,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow and be sorted");
14288f46ffcaSHong Zhang   }
14298f46ffcaSHong Zhang 
14307dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
14317dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
14328f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
14338f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
14348f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
14358f46ffcaSHong Zhang   }
14368f46ffcaSHong Zhang   PetscFunctionReturn(0);
14378f46ffcaSHong Zhang }
14388f46ffcaSHong Zhang 
1439dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1440a30f8f8cSSatish Balay {
1441a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1442dfbe8321SBarry Smith   PetscErrorCode ierr;
1443a30f8f8cSSatish Balay 
1444a30f8f8cSSatish Balay   PetscFunctionBegin;
1445a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1446a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1447a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1448a30f8f8cSSatish Balay }
1449a30f8f8cSSatish Balay 
1450dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1451a30f8f8cSSatish Balay {
1452a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1453a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1454dfbe8321SBarry Smith   PetscErrorCode ierr;
14553966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
1456a30f8f8cSSatish Balay 
1457a30f8f8cSSatish Balay   PetscFunctionBegin;
1458d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
145926fbe8dcSKarl Rupp 
1460a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
146126fbe8dcSKarl Rupp 
1462a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1463a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
146426fbe8dcSKarl Rupp 
1465a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
146626fbe8dcSKarl Rupp 
1467a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1468a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1469a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1470a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1471a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1472a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1473a30f8f8cSSatish Balay     info->memory       = isend[3];
1474a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1475a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1476820f2d46SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRMPI(ierr);
147726fbe8dcSKarl Rupp 
1478a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1479a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1480a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1481a30f8f8cSSatish Balay     info->memory       = irecv[3];
1482a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1483a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1484820f2d46SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRMPI(ierr);
148526fbe8dcSKarl Rupp 
1486a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1487a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1488a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1489a30f8f8cSSatish Balay     info->memory       = irecv[3];
1490a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
149198921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1492a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1493a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1494a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1495a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1496a30f8f8cSSatish Balay }
1497a30f8f8cSSatish Balay 
1498ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1499a30f8f8cSSatish Balay {
1500a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1501d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1502dfbe8321SBarry Smith   PetscErrorCode ierr;
1503a30f8f8cSSatish Balay 
1504a30f8f8cSSatish Balay   PetscFunctionBegin;
1505e98b92d7SKris Buschelman   switch (op) {
1506512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1507e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
150828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1509a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1510c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1511e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
151243674050SBarry Smith     MatCheckPreallocated(A,1);
15134e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15144e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1515e98b92d7SKris Buschelman     break;
1516e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
151743674050SBarry Smith     MatCheckPreallocated(A,1);
15184e0d8c25SBarry Smith     a->roworiented = flg;
151926fbe8dcSKarl Rupp 
15204e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15214e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1522e98b92d7SKris Buschelman     break;
15238c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1524071fcb05SBarry Smith   case MAT_SORTED_FULL:
15257d3de750SJacob Faibussowitsch     ierr = PetscInfo(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1526e98b92d7SKris Buschelman     break;
1527e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15284e0d8c25SBarry Smith     a->donotstash = flg;
1529e98b92d7SKris Buschelman     break;
1530e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
15314e0d8c25SBarry Smith     a->ht_flag = flg;
1532e98b92d7SKris Buschelman     break;
15339a4540c5SBarry Smith   case MAT_HERMITIAN:
153443674050SBarry Smith     MatCheckPreallocated(A,1);
1535eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15360f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1537eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1538547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1539eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1540eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1541eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1542eb1ec7c1SStefano Zampini       A->symmetric = PETSC_FALSE;
1543eb1ec7c1SStefano Zampini     }
15440f2140c7SStefano Zampini #endif
1545eeffb40dSHong Zhang     break;
1546ffa07934SHong Zhang   case MAT_SPD:
154777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
154843674050SBarry Smith     MatCheckPreallocated(A,1);
1549eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1550eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1551eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1552eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1553eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1554eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1555eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1556eb1ec7c1SStefano Zampini     }
1557eb1ec7c1SStefano Zampini #endif
1558eeffb40dSHong Zhang     break;
155977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
156043674050SBarry Smith     MatCheckPreallocated(A,1);
1561eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1562eeffb40dSHong Zhang     break;
15639a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
15642c71b3e2SJacob Faibussowitsch     PetscCheckFalse(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
15657d3de750SJacob Faibussowitsch     ierr = PetscInfo(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
156677e54ba9SKris Buschelman     break;
1567d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15684e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1569d0d4cfc2SHong Zhang     break;
1570d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15714e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1572d0d4cfc2SHong Zhang     break;
1573d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15744e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1575d0d4cfc2SHong Zhang     break;
1576e98b92d7SKris Buschelman   default:
157798921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1578a30f8f8cSSatish Balay   }
1579a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1580a30f8f8cSSatish Balay }
1581a30f8f8cSSatish Balay 
1582fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1583a30f8f8cSSatish Balay {
1584dfbe8321SBarry Smith   PetscErrorCode ierr;
15856e111a19SKarl Rupp 
1586a30f8f8cSSatish Balay   PetscFunctionBegin;
1587cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1588999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1589cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1590cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1591fc4dec0aSBarry Smith   }
15928115998fSBarry Smith   PetscFunctionReturn(0);
1593a30f8f8cSSatish Balay }
1594a30f8f8cSSatish Balay 
1595dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1596a30f8f8cSSatish Balay {
1597a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1598a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1599dfbe8321SBarry Smith   PetscErrorCode ierr;
16005e90f9d9SHong Zhang   PetscInt       nv,m,n;
1601ace3abfcSBarry Smith   PetscBool      flg;
1602a30f8f8cSSatish Balay 
1603a30f8f8cSSatish Balay   PetscFunctionBegin;
1604a30f8f8cSSatish Balay   if (ll != rr) {
1605b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
16062c71b3e2SJacob Faibussowitsch     PetscCheckFalse(!flg,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same");
1607a30f8f8cSSatish Balay   }
1608b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1609b3bf805bSHong Zhang 
16105e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
16112c71b3e2SJacob Faibussowitsch   PetscCheckFalse(m != n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same",m,n);
1612b3bf805bSHong Zhang 
16135e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
16142c71b3e2SJacob Faibussowitsch   PetscCheckFalse(nv!=n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
16155e90f9d9SHong Zhang 
1616ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16175e90f9d9SHong Zhang 
16185e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
16190298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
16205e90f9d9SHong Zhang 
16215e90f9d9SHong Zhang   /* scale the diagonal part */
1622a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1623a30f8f8cSSatish Balay 
16245e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1625ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16260298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1627a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1628a30f8f8cSSatish Balay }
1629a30f8f8cSSatish Balay 
1630dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1631a30f8f8cSSatish Balay {
1632f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1633dfbe8321SBarry Smith   PetscErrorCode ierr;
1634a30f8f8cSSatish Balay 
1635a30f8f8cSSatish Balay   PetscFunctionBegin;
1636a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1637a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1638a30f8f8cSSatish Balay }
1639a30f8f8cSSatish Balay 
16406849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1641a30f8f8cSSatish Balay 
1642ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1643a30f8f8cSSatish Balay {
1644a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1645a30f8f8cSSatish Balay   Mat            a,b,c,d;
1646ace3abfcSBarry Smith   PetscBool      flg;
1647dfbe8321SBarry Smith   PetscErrorCode ierr;
1648a30f8f8cSSatish Balay 
1649a30f8f8cSSatish Balay   PetscFunctionBegin;
1650a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1651a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1652a30f8f8cSSatish Balay 
1653a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1654abc0a331SBarry Smith   if (flg) {
1655a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1656a30f8f8cSSatish Balay   }
1657820f2d46SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
1658a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1659a30f8f8cSSatish Balay }
1660a30f8f8cSSatish Balay 
16613c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16623c896bc6SHong Zhang {
16633c896bc6SHong Zhang   PetscErrorCode ierr;
16644c7a3774SStefano Zampini   PetscBool      isbaij;
16653c896bc6SHong Zhang 
16663c896bc6SHong Zhang   PetscFunctionBegin;
16674c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
16682c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!isbaij,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
16693c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16703c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1671d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16723c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1673d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16743c896bc6SHong Zhang   } else {
16754c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
16764c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
16774c7a3774SStefano Zampini 
16783c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16793c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16803c896bc6SHong Zhang   }
1681cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
16823c896bc6SHong Zhang   PetscFunctionReturn(0);
16833c896bc6SHong Zhang }
16843c896bc6SHong Zhang 
16854994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1686273d9f13SBarry Smith {
1687dfbe8321SBarry Smith   PetscErrorCode ierr;
1688273d9f13SBarry Smith 
1689273d9f13SBarry Smith   PetscFunctionBegin;
1690f4259b30SLisandro Dalcin   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL);CHKERRQ(ierr);
1691273d9f13SBarry Smith   PetscFunctionReturn(0);
1692273d9f13SBarry Smith }
1693a5e6ed63SBarry Smith 
16944fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16954fe895cdSHong Zhang {
16964fe895cdSHong Zhang   PetscErrorCode ierr;
16974fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16984fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16994fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
17004fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
17014fe895cdSHong Zhang 
17024fe895cdSHong Zhang   PetscFunctionBegin;
17034fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17044fe895cdSHong Zhang     PetscScalar alpha = a;
17054fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
17064fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1707c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
17088b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
17094fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
17104fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1711c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
17128b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1713a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1714ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1715ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1716ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1717ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
17184fe895cdSHong Zhang   } else {
17194de5dceeSHong Zhang     Mat      B;
17204de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
17212c71b3e2SJacob Faibussowitsch     PetscCheckFalse(bs != X->rmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1722d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
17234de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
17244de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
17254de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
17264de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
17274de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
17284de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
17294de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
17304de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
17314de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
17324de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
17334de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
17344de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
173579c2fd05SStefano Zampini     ierr = MatHeaderMerge(Y,&B);CHKERRQ(ierr);
17364de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
17374de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1738d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17394de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17404fe895cdSHong Zhang   }
17414fe895cdSHong Zhang   PetscFunctionReturn(0);
17424fe895cdSHong Zhang }
17434fe895cdSHong Zhang 
17447dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1745a5e6ed63SBarry Smith {
17466849ba73SBarry Smith   PetscErrorCode ierr;
17471302d50aSBarry Smith   PetscInt       i;
1748afebec48SHong Zhang   PetscBool      flg;
1749a5e6ed63SBarry Smith 
17506849ba73SBarry Smith   PetscFunctionBegin;
17517dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1752a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1753a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1754afebec48SHong Zhang     if (!flg) {
1755b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1756a5e6ed63SBarry Smith     }
17574dcd73b1SHong Zhang   }
1758a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1759a5e6ed63SBarry Smith }
1760a5e6ed63SBarry Smith 
17617d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17627d68702bSBarry Smith {
17637d68702bSBarry Smith   PetscErrorCode ierr;
17647d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17656f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17667d68702bSBarry Smith 
17677d68702bSBarry Smith   PetscFunctionBegin;
17686f33a894SBarry Smith   if (!Y->preallocated) {
17697d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17706f33a894SBarry Smith   } else if (!aij->nz) {
1771b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17726f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1773b83222d8SBarry Smith     aij->nonew = nonew;
17747d68702bSBarry Smith   }
17757d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
17767d68702bSBarry Smith   PetscFunctionReturn(0);
17777d68702bSBarry Smith }
17787d68702bSBarry Smith 
17793b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
17803b49f96aSBarry Smith {
17813b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
17823b49f96aSBarry Smith   PetscErrorCode ierr;
17833b49f96aSBarry Smith 
17843b49f96aSBarry Smith   PetscFunctionBegin;
17852c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->rmap->n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
17863b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
17873b49f96aSBarry Smith   if (d) {
17883b49f96aSBarry Smith     PetscInt rstart;
17893b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
17903b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
17913b49f96aSBarry Smith 
17923b49f96aSBarry Smith   }
17933b49f96aSBarry Smith   PetscFunctionReturn(0);
17943b49f96aSBarry Smith }
17953b49f96aSBarry Smith 
1796a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1797a5b7ff6bSBarry Smith {
1798a5b7ff6bSBarry Smith   PetscFunctionBegin;
1799a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1800a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1801a5b7ff6bSBarry Smith }
18023b49f96aSBarry Smith 
1803a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
18043964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1805a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1806a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1807a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
180897304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1809431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1810431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
1814f4259b30SLisandro Dalcin                                /* 10*/ NULL,
1815f4259b30SLisandro Dalcin                                        NULL,
1816f4259b30SLisandro Dalcin                                        NULL,
181741f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1818a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
181997304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1820a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1821a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1822a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1823a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
182497304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1825a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1826a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1827a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1828f4259b30SLisandro Dalcin                                /* 24*/ NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        NULL,
1831f4259b30SLisandro Dalcin                                        NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
18334994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1834f4259b30SLisandro Dalcin                                        NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1837f4259b30SLisandro Dalcin                                        NULL,
1838d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1839f4259b30SLisandro Dalcin                                        NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
18447dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1845d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1846a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18473c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1848f4259b30SLisandro Dalcin                                /* 44*/ NULL,
1849a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18507d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                /* 49*/ NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                /* 54*/ NULL,
1859f4259b30SLisandro Dalcin                                        NULL,
1860a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1861f4259b30SLisandro Dalcin                                        NULL,
1862a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18637dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1864f4259b30SLisandro Dalcin                                        NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
1868f4259b30SLisandro Dalcin                                /* 64*/ NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1874f4259b30SLisandro Dalcin                                        NULL,
187528d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                /* 74*/ NULL,
1879f4259b30SLisandro Dalcin                                        NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                /* 79*/ NULL,
1884f4259b30SLisandro Dalcin                                        NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
18875bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1888f4259b30SLisandro Dalcin                                /* 84*/ NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                /* 89*/ NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                /* 94*/ NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                /* 99*/ NULL,
1904f4259b30SLisandro Dalcin                                        NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
19062726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                /*104*/ NULL,
190999cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1910d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1911d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
191295936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1913f4259b30SLisandro Dalcin                                /*109*/ NULL,
1914f4259b30SLisandro Dalcin                                        NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
19173b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1918f4259b30SLisandro Dalcin                                /*114*/ NULL,
1919f4259b30SLisandro Dalcin                                        NULL,
1920f4259b30SLisandro Dalcin                                        NULL,
1921f4259b30SLisandro Dalcin                                        NULL,
1922f4259b30SLisandro Dalcin                                        NULL,
1923f4259b30SLisandro Dalcin                                /*119*/ NULL,
1924f4259b30SLisandro Dalcin                                        NULL,
1925f4259b30SLisandro Dalcin                                        NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
1927f4259b30SLisandro Dalcin                                        NULL,
1928f4259b30SLisandro Dalcin                                /*124*/ NULL,
1929f4259b30SLisandro Dalcin                                        NULL,
1930f4259b30SLisandro Dalcin                                        NULL,
1931f4259b30SLisandro Dalcin                                        NULL,
1932f4259b30SLisandro Dalcin                                        NULL,
1933f4259b30SLisandro Dalcin                                /*129*/ NULL,
1934f4259b30SLisandro Dalcin                                        NULL,
1935f4259b30SLisandro Dalcin                                        NULL,
1936f4259b30SLisandro Dalcin                                        NULL,
1937f4259b30SLisandro Dalcin                                        NULL,
1938f4259b30SLisandro Dalcin                                /*134*/ NULL,
1939f4259b30SLisandro Dalcin                                        NULL,
1940f4259b30SLisandro Dalcin                                        NULL,
1941f4259b30SLisandro Dalcin                                        NULL,
1942f4259b30SLisandro Dalcin                                        NULL,
194346533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
1944f4259b30SLisandro Dalcin                                        NULL,
1945f4259b30SLisandro Dalcin                                        NULL,
1946f4259b30SLisandro Dalcin                                        NULL,
1947f4259b30SLisandro Dalcin                                        NULL,
1948*d70f29a3SPierre Jolivet                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1949*d70f29a3SPierre Jolivet                                        NULL,
1950*d70f29a3SPierre Jolivet                                        NULL,
1951*d70f29a3SPierre Jolivet                                        NULL
195299cafbc1SBarry Smith };
1953a30f8f8cSSatish Balay 
1954b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1955a23d5eceSKris Buschelman {
1956476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
1957dfbe8321SBarry Smith   PetscErrorCode ierr;
1958535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
19595d2a9ed1SStefano Zampini   PetscMPIInt    size;
1960a23d5eceSKris Buschelman 
1961a23d5eceSKris Buschelman   PetscFunctionBegin;
196233d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
196326283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
196426283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1965e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
19662c71b3e2SJacob Faibussowitsch   PetscCheckFalse(B->rmap->N > B->cmap->N,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->N,B->cmap->N);
19672c71b3e2SJacob Faibussowitsch   PetscCheckFalse(B->rmap->n > B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->n,B->cmap->n);
1968899cda47SBarry Smith 
1969d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1970d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
19712c71b3e2SJacob Faibussowitsch   PetscCheckFalse(mbs*bs != B->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT,B->rmap->N,bs);
1972a23d5eceSKris Buschelman 
1973d0f46423SBarry Smith   B->rmap->bs = bs;
1974a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1975a23d5eceSKris Buschelman   b->mbs      = mbs;
1976a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1977de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1978de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1979a23d5eceSKris Buschelman 
1980a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1981d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1982a23d5eceSKris Buschelman   }
1983d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1984d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1985a23d5eceSKris Buschelman 
1986d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1987d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1988a23d5eceSKris Buschelman 
1989cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1990cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
1991cb7b82ddSBarry Smith #else
1992cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
1993cb7b82ddSBarry Smith #endif
1994cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
1995cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
1996cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
1997cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
1998cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
1999cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2000cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2001cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2002cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2003cb7b82ddSBarry Smith 
2004cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
2005ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr);
2006cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2007cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
20085d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2009cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2010cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2011cb7b82ddSBarry Smith 
2012526dfc15SBarry Smith   if (!B->preallocated) {
2013f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2014d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
20159c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
20163bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2017ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2018526dfc15SBarry Smith   }
2019a23d5eceSKris Buschelman 
2020526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2021526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
202226fbe8dcSKarl Rupp 
2023526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2024cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2025cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2026a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2027a23d5eceSKris Buschelman }
2028a23d5eceSKris Buschelman 
2029dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2030dfb205c3SBarry Smith {
203102106b30SBarry Smith   PetscInt       m,rstart,cend;
2032f4259b30SLisandro Dalcin   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL;
2033f4259b30SLisandro Dalcin   const PetscInt *JJ    =NULL;
2034f4259b30SLisandro Dalcin   PetscScalar    *values=NULL;
2035bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
2036dfb205c3SBarry Smith   PetscErrorCode ierr;
20373bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2038dfb205c3SBarry Smith 
2039dfb205c3SBarry Smith   PetscFunctionBegin;
20402c71b3e2SJacob Faibussowitsch   PetscCheckFalse(bs < 1,PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %" PetscInt_FMT,bs);
2041dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2042dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2043dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2044dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2045e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2046dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2047dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2048dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2049dfb205c3SBarry Smith 
20502c71b3e2SJacob Faibussowitsch   PetscCheckFalse(ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]);
2051dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2052dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2053dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
20542c71b3e2SJacob Faibussowitsch     PetscCheckFalse(nz < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz);
20550cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2056dfb205c3SBarry Smith     JJ     = jj + ii[i];
20570cd7f59aSBarry Smith     bd     = 0;
2058dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
20590cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2060dfb205c3SBarry Smith       JJ++;
20610cd7f59aSBarry Smith       bd++;
2062dfb205c3SBarry Smith     }
2063dfb205c3SBarry Smith     d  = 0;
2064dfb205c3SBarry Smith     for (; j<nz; j++) {
2065dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2066dfb205c3SBarry Smith       d++;
2067dfb205c3SBarry Smith     }
2068dfb205c3SBarry Smith     d_nnz[i] = d;
20690cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20700cd7f59aSBarry Smith     nz       = nz - bd;
20710cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2072dfb205c3SBarry Smith   }
2073dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2074bb80cfbbSStefano Zampini   ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
2075dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2076dfb205c3SBarry Smith 
2077dfb205c3SBarry Smith   values = (PetscScalar*)V;
2078dfb205c3SBarry Smith   if (!values) {
2079580bdb30SBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2080dfb205c3SBarry Smith   }
2081dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2082dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2083dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2084dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2085bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2086dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2087dfb205c3SBarry Smith       ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2088bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2089bb80cfbbSStefano Zampini       PetscInt j;
20900cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
20910cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
20920cd7f59aSBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
20930cd7f59aSBarry Smith       }
20940cd7f59aSBarry Smith     }
2095dfb205c3SBarry Smith   }
2096dfb205c3SBarry Smith 
2097dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
20983bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20993bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2100dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2101dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
21023bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
21033bd0feecSPierre Jolivet 
21047827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2105dfb205c3SBarry Smith   PetscFunctionReturn(0);
2106dfb205c3SBarry Smith }
2107dfb205c3SBarry Smith 
21080bad9183SKris Buschelman /*MC
2109fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2110828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2111828413b8SBarry Smith    the matrix is stored.
2112828413b8SBarry Smith 
2113828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2114828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
21150bad9183SKris Buschelman 
21160bad9183SKris Buschelman    Options Database Keys:
21170bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
21180bad9183SKris Buschelman 
2119476417e5SBarry Smith    Notes:
2120476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2121476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2122476417e5SBarry Smith 
21230bad9183SKris Buschelman    Level: beginner
21240bad9183SKris Buschelman 
2125fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType
21260bad9183SKris Buschelman M*/
21270bad9183SKris Buschelman 
21288cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2129b5df2d14SHong Zhang {
2130b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2131dfbe8321SBarry Smith   PetscErrorCode ierr;
213294ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2133b5df2d14SHong Zhang 
2134b5df2d14SHong Zhang   PetscFunctionBegin;
2135b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2136b0a32e0cSBarry Smith   B->data = (void*)b;
2137b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2138b5df2d14SHong Zhang 
2139b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2140b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2141b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2142b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
214326fbe8dcSKarl Rupp 
2144ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRMPI(ierr);
2145ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRMPI(ierr);
2146b5df2d14SHong Zhang 
2147b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2148854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2149b5df2d14SHong Zhang 
2150b5df2d14SHong Zhang   /* build cache for off array entries formed */
2151ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
215226fbe8dcSKarl Rupp 
2153b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21540298fd71SBarry Smith   b->colmap      = NULL;
21550298fd71SBarry Smith   b->garray      = NULL;
2156b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2157b5df2d14SHong Zhang 
2158b5df2d14SHong Zhang   /* stuff used in block assembly */
2159f4259b30SLisandro Dalcin   b->barray = NULL;
2160b5df2d14SHong Zhang 
2161b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2162f4259b30SLisandro Dalcin   b->lvec    = NULL;
2163f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2164f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2165f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2166f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2167f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2168f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2169f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2170b5df2d14SHong Zhang 
2171b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2172f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2173f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2174b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2175b5df2d14SHong Zhang 
2176b5df2d14SHong Zhang   /* hash table stuff */
2177f4259b30SLisandro Dalcin   b->ht           = NULL;
2178f4259b30SLisandro Dalcin   b->hd           = NULL;
2179b5df2d14SHong Zhang   b->ht_size      = 0;
2180b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2181b5df2d14SHong Zhang   b->ht_fact      = 0;
2182b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2183b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2184b5df2d14SHong Zhang 
21857dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21867a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21877a868f3eSHong Zhang 
2188f4259b30SLisandro Dalcin   b->in_loc = NULL;
2189f4259b30SLisandro Dalcin   b->v_loc  = NULL;
219059ffdab8SBarry Smith   b->n_loc  = 0;
219194ae4db5SBarry Smith 
2192bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2193bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2194bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2195bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
21966214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21976214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
21986214f412SHong Zhang #endif
2199d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2200d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);CHKERRQ(ierr);
2201d24d4204SJose E. Roman #endif
220228d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
220328d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
2204aa5a9175SDahai Guo 
220523ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
220623ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
220723ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
220823ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
22099899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
2210eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
221113647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
221213647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
2213eb1ec7c1SStefano Zampini #else
2214eb1ec7c1SStefano Zampini   B->hermitian                  = PETSC_TRUE;
2215eb1ec7c1SStefano Zampini   B->hermitian_set              = PETSC_TRUE;
2216eb1ec7c1SStefano Zampini #endif
221713647f61SHong Zhang 
221817667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
221994ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
222094ae4db5SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
222194ae4db5SBarry Smith   if (flg) {
222294ae4db5SBarry Smith     PetscReal fact = 1.39;
222394ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
222494ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
222594ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
222694ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
22277d3de750SJacob Faibussowitsch     ierr = PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact);CHKERRQ(ierr);
222894ae4db5SBarry Smith   }
222994ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2230b5df2d14SHong Zhang   PetscFunctionReturn(0);
2231b5df2d14SHong Zhang }
2232b5df2d14SHong Zhang 
2233209238afSKris Buschelman /*MC
2234002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2235209238afSKris Buschelman 
2236209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2237209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2238209238afSKris Buschelman 
2239209238afSKris Buschelman    Options Database Keys:
2240209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2241209238afSKris Buschelman 
2242209238afSKris Buschelman   Level: beginner
2243209238afSKris Buschelman 
224406946f3aSJose E. Roman .seealso: MatCreateSBAIJ, MATSEQSBAIJ, MATMPISBAIJ
2245209238afSKris Buschelman M*/
2246209238afSKris Buschelman 
2247b5df2d14SHong Zhang /*@C
2248b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2249b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2250b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2251b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2252b5df2d14SHong Zhang 
2253b5df2d14SHong Zhang    Collective on Mat
2254b5df2d14SHong Zhang 
2255b5df2d14SHong Zhang    Input Parameters:
22561c4f3114SJed Brown +  B - the matrix
2257bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2258bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2259b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2260b5df2d14SHong Zhang            submatrix  (same for all local rows)
2261b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
22626d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22630298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
226495742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2265b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2266b5df2d14SHong Zhang            submatrix (same for all local rows).
2267b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2268c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22690298fd71SBarry Smith            (possibly different for each block row) or NULL.
2270b5df2d14SHong Zhang 
2271b5df2d14SHong Zhang    Options Database Keys:
2272a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2273b5df2d14SHong Zhang                      block calculations (much slower)
2274a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2275b5df2d14SHong Zhang 
2276b5df2d14SHong Zhang    Notes:
2277b5df2d14SHong Zhang 
2278b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2279b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2280b5df2d14SHong Zhang 
228149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
228249a6f317SBarry Smith 
2283b5df2d14SHong Zhang    Storage Information:
2284b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2285b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2286b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2287b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2288b5df2d14SHong Zhang 
2289b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2290b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
22910298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2292b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2293b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2294b5df2d14SHong Zhang 
2295aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2296aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2297aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2298aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2299aa95bbe8SBarry Smith 
2300b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2301b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2302b5df2d14SHong Zhang 
2303b5df2d14SHong Zhang .vb
2304b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2305a4b1a0f6SJed Brown           --------------------------
2306c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2307c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2308c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2309a4b1a0f6SJed Brown           --------------------------
2310b5df2d14SHong Zhang .ve
2311b5df2d14SHong Zhang 
2312b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2313b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
23146d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23156d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2316b5df2d14SHong Zhang 
23176d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23186d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2319c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2320c2fc9fa9SBarry Smith 
2321b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2322b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2323b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2324b5df2d14SHong Zhang    matrices.
2325b5df2d14SHong Zhang 
2326b5df2d14SHong Zhang    Level: intermediate
2327b5df2d14SHong Zhang 
2328ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2329b5df2d14SHong Zhang @*/
23307087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2331b5df2d14SHong Zhang {
23324ac538c5SBarry Smith   PetscErrorCode ierr;
2333b5df2d14SHong Zhang 
2334b5df2d14SHong Zhang   PetscFunctionBegin;
23356ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
23366ba663aaSJed Brown   PetscValidType(B,1);
23376ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
23384ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2339b5df2d14SHong Zhang   PetscFunctionReturn(0);
2340b5df2d14SHong Zhang }
2341b5df2d14SHong Zhang 
2342a30f8f8cSSatish Balay /*@C
234369b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2344a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2345a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2346a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2347a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2348a30f8f8cSSatish Balay 
2349d083f849SBarry Smith    Collective
2350a30f8f8cSSatish Balay 
2351a30f8f8cSSatish Balay    Input Parameters:
2352a30f8f8cSSatish Balay +  comm - MPI communicator
2353bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2354bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2355a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2356a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2357a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2358a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2359a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2360a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2361a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2362a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2363a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2364a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2365a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
23666d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23670298fd71SBarry Smith            (possibly different for each block block row) or NULL.
236895742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
236995742e49SBarry Smith            set its value even if it is zero.
2370a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2371a30f8f8cSSatish Balay            submatrix (same for all local rows).
2372a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2373a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23740298fd71SBarry Smith            each block row) or NULL.
2375a30f8f8cSSatish Balay 
2376a30f8f8cSSatish Balay    Output Parameter:
2377a30f8f8cSSatish Balay .  A - the matrix
2378a30f8f8cSSatish Balay 
2379a30f8f8cSSatish Balay    Options Database Keys:
2380a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2381a30f8f8cSSatish Balay                      block calculations (much slower)
2382a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2383a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2384a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2385a30f8f8cSSatish Balay 
2386175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2387f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2388175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2389175b88e8SBarry Smith 
2390a30f8f8cSSatish Balay    Notes:
2391d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23926d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2393d1be2dadSMatthew Knepley 
2394a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2395a30f8f8cSSatish Balay    (possibly both).
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2398a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2399a30f8f8cSSatish Balay 
240049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
240149a6f317SBarry Smith 
2402a30f8f8cSSatish Balay    Storage Information:
2403a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2404a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2405a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2406a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2407a30f8f8cSSatish Balay 
2408a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2409a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
24100298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2411a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2412a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2413a30f8f8cSSatish Balay 
2414a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2415a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2416a30f8f8cSSatish Balay 
2417a30f8f8cSSatish Balay .vb
2418a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2419a4b1a0f6SJed Brown           --------------------------
2420c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2421c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2422c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2423a4b1a0f6SJed Brown           --------------------------
2424a30f8f8cSSatish Balay .ve
2425a30f8f8cSSatish Balay 
2426a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2427a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
24286d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24296d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2430a30f8f8cSSatish Balay 
24316d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24326d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2433a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2434a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2435a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2436a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2437a30f8f8cSSatish Balay    matrices.
2438a30f8f8cSSatish Balay 
2439a30f8f8cSSatish Balay    Level: intermediate
2440a30f8f8cSSatish Balay 
244169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2442a30f8f8cSSatish Balay @*/
2443a30f8f8cSSatish Balay 
244469b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2445a30f8f8cSSatish Balay {
24466849ba73SBarry Smith   PetscErrorCode ierr;
24471302d50aSBarry Smith   PetscMPIInt    size;
2448a30f8f8cSSatish Balay 
2449a30f8f8cSSatish Balay   PetscFunctionBegin;
2450f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2451f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2452ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2453273d9f13SBarry Smith   if (size > 1) {
2454b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2455b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2456273d9f13SBarry Smith   } else {
2457273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2458273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2459273d9f13SBarry Smith   }
2460a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2461a30f8f8cSSatish Balay }
2462a30f8f8cSSatish Balay 
24636849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2464a30f8f8cSSatish Balay {
2465a30f8f8cSSatish Balay   Mat            mat;
2466a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2467dfbe8321SBarry Smith   PetscErrorCode ierr;
2468d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2469387bc808SHong Zhang   PetscScalar    *array;
2470a30f8f8cSSatish Balay 
2471a30f8f8cSSatish Balay   PetscFunctionBegin;
2472f4259b30SLisandro Dalcin   *newmat = NULL;
247326fbe8dcSKarl Rupp 
2474ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2475d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
24767adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24771e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
24781e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2479e1b6402fSHong Zhang 
2480d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2481273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
248282327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24837fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24847fff6886SHong Zhang 
2485b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2486a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2487a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2488a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2489a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2490a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2491a30f8f8cSSatish Balay 
2492a30f8f8cSSatish Balay   a->size         = oldmat->size;
2493a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2494a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2495a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2496f4259b30SLisandro Dalcin   a->rowindices   = NULL;
2497f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
2498a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2499f4259b30SLisandro Dalcin   a->barray       = NULL;
2500899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2501899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2502899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2503899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2504a30f8f8cSSatish Balay 
2505a30f8f8cSSatish Balay   /* hash table stuff */
2506f4259b30SLisandro Dalcin   a->ht           = NULL;
2507f4259b30SLisandro Dalcin   a->hd           = NULL;
2508a30f8f8cSSatish Balay   a->ht_size      = 0;
2509a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2510a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2511a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2512a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2513a30f8f8cSSatish Balay 
2514580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr);
2515a30f8f8cSSatish Balay   if (oldmat->colmap) {
2516a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2517a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2518a30f8f8cSSatish Balay #else
2519854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
25203bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2521580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
2522a30f8f8cSSatish Balay #endif
2523f4259b30SLisandro Dalcin   } else a->colmap = NULL;
2524387bc808SHong Zhang 
2525a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2526785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
25273bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2528580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
2529f4259b30SLisandro Dalcin   } else a->garray = NULL;
2530a30f8f8cSSatish Balay 
2531ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2532a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
25333bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2534a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
25353bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
253682327fa8SHong Zhang 
253782327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
25383bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
253982327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
25403bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2541387bc808SHong Zhang 
2542387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
25431ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2544778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2545778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
25461ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
25471ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2548778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
25491ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
25503bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
25513bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
25523bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
25533bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
25543bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2555387bc808SHong Zhang 
2556387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2557387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2558387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
25593bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
256082327fa8SHong Zhang 
2561a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
25623bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2563a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
25643bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2565140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2566a30f8f8cSSatish Balay   *newmat = mat;
2567a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2568a30f8f8cSSatish Balay }
2569a30f8f8cSSatish Balay 
2570618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2571618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2572618cc2edSLisandro Dalcin 
2573618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer)
257495936485SShri Abhyankar {
257595936485SShri Abhyankar   PetscErrorCode ierr;
25767f489da9SVaclav Hapla   PetscBool      isbinary;
257795936485SShri Abhyankar 
257895936485SShri Abhyankar   PetscFunctionBegin;
25797f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
25802c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
2581618cc2edSLisandro Dalcin   ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
258295936485SShri Abhyankar   PetscFunctionReturn(0);
258395936485SShri Abhyankar }
258495936485SShri Abhyankar 
2585dcf5cc72SBarry Smith /*XXXXX@
2586a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2587a30f8f8cSSatish Balay 
2588a30f8f8cSSatish Balay    Input Parameters:
2589a30f8f8cSSatish Balay .  mat  - the matrix
2590a30f8f8cSSatish Balay .  fact - factor
2591a30f8f8cSSatish Balay 
2592c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2593a30f8f8cSSatish Balay 
2594a30f8f8cSSatish Balay    Level: advanced
2595a30f8f8cSSatish Balay 
2596a30f8f8cSSatish Balay   Notes:
2597a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2598a30f8f8cSSatish Balay 
2599a30f8f8cSSatish Balay .seealso: MatSetOption()
2600dcf5cc72SBarry Smith @XXXXX*/
2601dcf5cc72SBarry Smith 
2602985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
260324d5174aSHong Zhang {
260424d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2605f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2606ca54ac64SHong Zhang   PetscReal      atmp;
260787828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2608dfbe8321SBarry Smith   PetscErrorCode ierr;
26091302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
26101302d50aSBarry Smith   PetscMPIInt    rank,size;
26111302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
261287828ca2SBarry Smith   PetscScalar    *va;
26138a1c53f2SBarry Smith   MatScalar      *ba;
2614f4c0e9e4SHong Zhang   MPI_Status     stat;
261524d5174aSHong Zhang 
261624d5174aSHong Zhang   PetscFunctionBegin;
26172c71b3e2SJacob Faibussowitsch   PetscCheckFalse(idx,PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
26180298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
26191ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2620f4c0e9e4SHong Zhang 
2621ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr);
2622ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRMPI(ierr);
2623f4c0e9e4SHong Zhang 
2624d0f46423SBarry Smith   bs  = A->rmap->bs;
2625f4c0e9e4SHong Zhang   mbs = a->mbs;
2626f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2627f4c0e9e4SHong Zhang   ba  = b->a;
2628f4c0e9e4SHong Zhang   bi  = b->i;
2629f4c0e9e4SHong Zhang   bj  = b->j;
2630f4c0e9e4SHong Zhang 
2631f4c0e9e4SHong Zhang   /* find ownerships */
2632d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2633f4c0e9e4SHong Zhang 
2634f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2635580bdb30SBarry Smith   ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2636f4c0e9e4SHong Zhang 
2637f4c0e9e4SHong Zhang   /* row_max for B */
2638b8475685SHong Zhang   if (rank != size-1) {
2639f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2640f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2641f4c0e9e4SHong Zhang       brow  = bs*i;
2642f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2643f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2644f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2645ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
264604d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2647f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2648f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2649ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2650ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2651f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2652f4c0e9e4SHong Zhang           }
2653f4c0e9e4SHong Zhang         }
2654f4c0e9e4SHong Zhang         bj++;
2655f4c0e9e4SHong Zhang       }
2656f4c0e9e4SHong Zhang     }
2657f4c0e9e4SHong Zhang 
2658f4c0e9e4SHong Zhang     /* send values to its owners */
2659f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2660f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2661ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
266255b25c41SPierre Jolivet       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
2663ca54ac64SHong Zhang     }
2664f4c0e9e4SHong Zhang   }
2665f4c0e9e4SHong Zhang 
2666f4c0e9e4SHong Zhang   /* receive values */
2667ca54ac64SHong Zhang   if (rank) {
2668f4c0e9e4SHong Zhang     rvalues = work;
2669ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2670f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2671ffc4695bSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRMPI(ierr);
2672f4c0e9e4SHong Zhang       /* process values */
2673f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2674ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2675f4c0e9e4SHong Zhang       }
2676f4c0e9e4SHong Zhang     }
2677ca54ac64SHong Zhang   }
2678f4c0e9e4SHong Zhang 
26791ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2680ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
268124d5174aSHong Zhang   PetscFunctionReturn(0);
268224d5174aSHong Zhang }
26832798e883SHong Zhang 
268441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26852798e883SHong Zhang {
26862798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2687dfbe8321SBarry Smith   PetscErrorCode    ierr;
2688d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26893649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2690ffe4fb16SHong Zhang   Vec               bb1;
26913649974fSBarry Smith   const PetscScalar *b;
2692ffe4fb16SHong Zhang 
2693ffe4fb16SHong Zhang   PetscFunctionBegin;
26942c71b3e2SJacob Faibussowitsch   PetscCheckFalse(its <= 0 || lits <= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits);
26952c71b3e2SJacob Faibussowitsch   PetscCheckFalse(bs > 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2696ffe4fb16SHong Zhang 
2697a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
269841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2699a2b30743SBarry Smith     PetscFunctionReturn(0);
2700a2b30743SBarry Smith   }
2701a2b30743SBarry Smith 
2702ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2703ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
270441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2705ffe4fb16SHong Zhang       its--;
2706ffe4fb16SHong Zhang     }
2707ffe4fb16SHong Zhang 
2708ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2709ffe4fb16SHong Zhang     while (its--) {
2710ffe4fb16SHong Zhang 
2711ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2712ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2713ffe4fb16SHong Zhang 
2714ffe4fb16SHong Zhang       /* copy xx into slvec0a */
27151ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
27161ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2717580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr);
27181ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2719ffe4fb16SHong Zhang 
2720efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2721ffe4fb16SHong Zhang 
2722ffe4fb16SHong Zhang       /* copy bb into slvec1a */
27231ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
27243649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2725580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr);
27261ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2727ffe4fb16SHong Zhang 
2728ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2729fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2730ffe4fb16SHong Zhang 
2731ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27321ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2733a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2734ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2735ffe4fb16SHong Zhang 
2736ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2737ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2738ffe4fb16SHong Zhang 
2739ffe4fb16SHong Zhang       /* local diagonal sweep */
274041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2741ffe4fb16SHong Zhang     }
27426bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2743fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
274441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2745fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
274641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2747fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2748fa22f6d0SBarry Smith     Vec               xx1;
2749ace3abfcSBarry Smith     PetscBool         hasop;
275020f1ed55SBarry Smith     const PetscScalar *diag;
2751887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
275220f1ed55SBarry Smith     PetscInt          i,n;
2753fa22f6d0SBarry Smith 
2754fa22f6d0SBarry Smith     if (!mat->xx1) {
2755fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2756fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2757fa22f6d0SBarry Smith     }
2758fa22f6d0SBarry Smith     xx1 = mat->xx1;
2759fa22f6d0SBarry Smith     bb1 = mat->bb1;
2760fa22f6d0SBarry Smith 
276141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2762fa22f6d0SBarry Smith 
2763fa22f6d0SBarry Smith     if (!mat->diag) {
2764effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27652a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2766fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2767fa22f6d0SBarry Smith     }
2768fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2769fa22f6d0SBarry Smith 
2770fa22f6d0SBarry Smith     if (hasop) {
2771fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2772887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
277320f1ed55SBarry Smith     } else {
277420f1ed55SBarry Smith       /*
277520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
277620f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2777887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
277820f1ed55SBarry Smith       */
277920f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27803649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27813649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
278220f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
278320f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2784887ee2caSBarry Smith       if (omega == 1.0) {
278526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
278620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2787887ee2caSBarry Smith       } else {
278826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2789887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2790887ee2caSBarry Smith       }
279120f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27923649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27933649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
279420f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
279520f1ed55SBarry Smith     }
2796fa22f6d0SBarry Smith 
2797fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2798fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2799fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2800fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2801fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2802580bdb30SBarry Smith     ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
2803fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2804fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2805fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2806fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2807effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2808fa22f6d0SBarry Smith 
2809fa22f6d0SBarry Smith     /* local sweep */
281041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2811fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2812f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2813ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2814ffe4fb16SHong Zhang }
2815ffe4fb16SHong Zhang 
2816dfb205c3SBarry Smith /*@
2817dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2818dfb205c3SBarry Smith          CSR format the local rows.
2819dfb205c3SBarry Smith 
2820d083f849SBarry Smith    Collective
2821dfb205c3SBarry Smith 
2822dfb205c3SBarry Smith    Input Parameters:
2823dfb205c3SBarry Smith +  comm - MPI communicator
2824dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2825dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2826dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2827dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2828dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2829dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2830dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2831483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2832dfb205c3SBarry Smith .   j - column indices
2833dfb205c3SBarry Smith -   a - matrix values
2834dfb205c3SBarry Smith 
2835dfb205c3SBarry Smith    Output Parameter:
2836dfb205c3SBarry Smith .   mat - the matrix
2837dfb205c3SBarry Smith 
2838dfb205c3SBarry Smith    Level: intermediate
2839dfb205c3SBarry Smith 
2840dfb205c3SBarry Smith    Notes:
2841dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2842dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2843dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2844dfb205c3SBarry Smith 
2845dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2846dfb205c3SBarry Smith 
2847dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
284869b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2849dfb205c3SBarry Smith @*/
28507087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2851dfb205c3SBarry Smith {
2852dfb205c3SBarry Smith   PetscErrorCode ierr;
2853dfb205c3SBarry Smith 
2854dfb205c3SBarry Smith   PetscFunctionBegin;
28552c71b3e2SJacob Faibussowitsch   PetscCheckFalse(i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
28562c71b3e2SJacob Faibussowitsch   PetscCheckFalse(m < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2857dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2858dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2859dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2860dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2861dfb205c3SBarry Smith   PetscFunctionReturn(0);
2862dfb205c3SBarry Smith }
2863dfb205c3SBarry Smith 
2864dfb205c3SBarry Smith /*@C
2865664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
2866dfb205c3SBarry Smith 
2867d083f849SBarry Smith    Collective
2868dfb205c3SBarry Smith 
2869dfb205c3SBarry Smith    Input Parameters:
28701c4f3114SJed Brown +  B - the matrix
2871dfb205c3SBarry Smith .  bs - the block size
2872dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2873dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2874dfb205c3SBarry Smith -  v - optional values in the matrix
2875dfb205c3SBarry Smith 
2876664954b6SBarry Smith    Level: advanced
2877664954b6SBarry Smith 
2878664954b6SBarry Smith    Notes:
28790cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28800cd7f59aSBarry Smith    and usually the numerical values as well
28810cd7f59aSBarry Smith 
288250c5228eSBarry Smith    Any entries below the diagonal are ignored
2883dfb205c3SBarry Smith 
288469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2885dfb205c3SBarry Smith @*/
28867087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2887dfb205c3SBarry Smith {
28884ac538c5SBarry Smith   PetscErrorCode ierr;
2889dfb205c3SBarry Smith 
2890dfb205c3SBarry Smith   PetscFunctionBegin;
28914ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2892dfb205c3SBarry Smith   PetscFunctionReturn(0);
2893dfb205c3SBarry Smith }
2894dfb205c3SBarry Smith 
289510c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28964dcd73b1SHong Zhang {
28974dcd73b1SHong Zhang   PetscErrorCode ierr;
289810c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
289910c56fdeSHong Zhang   PetscInt       *indx;
290010c56fdeSHong Zhang   PetscScalar    *values;
2901dfb205c3SBarry Smith 
29024dcd73b1SHong Zhang   PetscFunctionBegin;
29034dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
290410c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
290510c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
2906de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
290710c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
2908de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
29094dcd73b1SHong Zhang 
291010c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
291110c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
291210c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
29131e1ea65dSPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);CHKERRQ(ierr);
291410c56fdeSHong Zhang     }
2915da91a574SPierre Jolivet     nbs = n/cbs;
29164dcd73b1SHong Zhang 
29174dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
2918de25e9cbSPierre Jolivet     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
2919de25e9cbSPierre Jolivet 
2920ffc4695bSBarry Smith     ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
2921ffc4695bSBarry Smith     ierr = MPI_Comm_rank(comm,&size);CHKERRMPI(ierr);
2922de25e9cbSPierre Jolivet     if (rank == size-1) {
2923de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
29242c71b3e2SJacob Faibussowitsch       PetscCheckFalse(__end != Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs);
2925de25e9cbSPierre Jolivet     }
2926de25e9cbSPierre Jolivet 
2927de25e9cbSPierre Jolivet     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
2928e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
292910c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
29304dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
29314dcd73b1SHong Zhang       nnz  = nnz/bs;
29324dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
29334dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
29344dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
29354dcd73b1SHong Zhang     }
2936e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
29374dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
29384dcd73b1SHong Zhang 
29394dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
2940de25e9cbSPierre Jolivet     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
29414dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
2942ce94fc41SPierre Jolivet     ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr);
2943ce94fc41SPierre Jolivet     ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
29444dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
29454dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
29464dcd73b1SHong Zhang   }
29474dcd73b1SHong Zhang 
294810c56fdeSHong Zhang   /* numeric phase */
29494dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
295010c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
29514dcd73b1SHong Zhang 
2952e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
29534dcd73b1SHong Zhang   for (i=0; i<m; i++) {
29544dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29554dcd73b1SHong Zhang     Ii   = i + rstart;
295610c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
29574dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29584dcd73b1SHong Zhang   }
2959e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
296010c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296110c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29624dcd73b1SHong Zhang   PetscFunctionReturn(0);
29634dcd73b1SHong Zhang }
2964