1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237e56f5c9eSBarry Smith A->nonzerostate++; \ 238a30f8f8cSSatish Balay a_noinsert:; \ 239a30f8f8cSSatish Balay ailen[brow] = nrow; \ 240a8f51744SPierre Jolivet } while (0) 241e5e170daSBarry Smith 242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 243a8f51744SPierre Jolivet do { \ 244a30f8f8cSSatish Balay brow = row / bs; \ 2459371c9d4SSatish Balay rp = bj + bi[brow]; \ 2469371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2479371c9d4SSatish Balay rmax = bimax[brow]; \ 2489371c9d4SSatish Balay nrow = bilen[brow]; \ 249a30f8f8cSSatish Balay bcol = col / bs; \ 2509371c9d4SSatish Balay ridx = row % bs; \ 2519371c9d4SSatish Balay cidx = col % bs; \ 2529371c9d4SSatish Balay low = 0; \ 2539371c9d4SSatish Balay high = nrow; \ 254a30f8f8cSSatish Balay while (high - low > 3) { \ 255a30f8f8cSSatish Balay t = (low + high) / 2; \ 256a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 257a30f8f8cSSatish Balay else low = t; \ 258a30f8f8cSSatish Balay } \ 259a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 260a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 261a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 262a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 263a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 264a30f8f8cSSatish Balay else *bap = value; \ 265a30f8f8cSSatish Balay goto b_noinsert; \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay } \ 268a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2695f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 270fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 271a30f8f8cSSatish Balay N = nrow++ - 1; \ 272a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 276a30f8f8cSSatish Balay rp[_i] = bcol; \ 277a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 278e56f5c9eSBarry Smith B->nonzerostate++; \ 279a30f8f8cSSatish Balay b_noinsert:; \ 280a30f8f8cSSatish Balay bilen[brow] = nrow; \ 281a8f51744SPierre Jolivet } while (0) 282a30f8f8cSSatish Balay 283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 284da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 285a30f8f8cSSatish Balay */ 28666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 287d71ae5a4SJacob Faibussowitsch { 288a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 289a30f8f8cSSatish Balay MatScalar value; 290ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2911302d50aSBarry Smith PetscInt i, j, row, col; 292d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 293d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 294d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay /* Some Variables required in the macro */ 297a30f8f8cSSatish Balay Mat A = baij->A; 298a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)(A)->data; 2991302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 300a30f8f8cSSatish Balay MatScalar *aa = a->a; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay Mat B = baij->B; 303a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 3041302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 305a30f8f8cSSatish Balay MatScalar *ba = b->a; 306a30f8f8cSSatish Balay 3071302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3081302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 309a30f8f8cSSatish Balay MatScalar *ap, *bap; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay /* for stash */ 3120298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3130298fd71SBarry Smith MatScalar *v_loc = NULL; 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay PetscFunctionBegin; 316a30f8f8cSSatish Balay if (!baij->donotstash) { 31759ffdab8SBarry Smith if (n > baij->n_loc) { 3189566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32226fbe8dcSKarl Rupp 32359ffdab8SBarry Smith baij->n_loc = n; 32459ffdab8SBarry Smith } 32559ffdab8SBarry Smith in_loc = baij->in_loc; 32659ffdab8SBarry Smith v_loc = baij->v_loc; 327a30f8f8cSSatish Balay } 328a30f8f8cSSatish Balay 329a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 330a30f8f8cSSatish Balay if (im[i] < 0) continue; 3315f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 332a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 333a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 334a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33501b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33601b2bd88SHong Zhang if (a->ignore_ltriangular) { 33701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33826fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33901b2bd88SHong Zhang } 340a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 341a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3429371c9d4SSatish Balay brow = row / bs; 3439371c9d4SSatish Balay bcol = col / bs; 344a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 345db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 346db4deed7SKarl Rupp else value = v[i + j * m]; 347d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3489566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 349f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 350f7d195e4SLawrence Mitchell continue; 351f7d195e4SLawrence Mitchell } else { 352f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 353f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 354a30f8f8cSSatish Balay if (mat->was_assembled) { 35548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 357eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35871730473SSatish Balay col = col - 1; 359a30f8f8cSSatish Balay #else 36071730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 361a30f8f8cSSatish Balay #endif 362a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) { 3639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 364a30f8f8cSSatish Balay col = in[j]; 365a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 366a30f8f8cSSatish Balay B = baij->B; 367a30f8f8cSSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 3689371c9d4SSatish Balay bimax = b->imax; 3699371c9d4SSatish Balay bi = b->i; 3709371c9d4SSatish Balay bilen = b->ilen; 3719371c9d4SSatish Balay bj = b->j; 372a30f8f8cSSatish Balay ba = b->a; 37371730473SSatish Balay } else col += in[j] % bs; 374a30f8f8cSSatish Balay } else col = in[j]; 375db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 376db4deed7SKarl Rupp else value = v[i + j * m]; 377d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3789566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 379a30f8f8cSSatish Balay } 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay } else { /* off processor entry */ 3825f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 383a30f8f8cSSatish Balay if (!baij->donotstash) { 3845080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 385a30f8f8cSSatish Balay n_loc = 0; 386a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 387f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 388a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 389a30f8f8cSSatish Balay if (roworiented) { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 391a30f8f8cSSatish Balay } else { 392a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay n_loc++; 395a30f8f8cSSatish Balay } 3969566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 404d71ae5a4SJacob Faibussowitsch { 40536bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40936bd2089SBarry Smith PetscBool roworiented = a->roworiented; 41036bd2089SBarry Smith const PetscScalar *value = v; 41136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41236bd2089SBarry Smith 41336bd2089SBarry Smith PetscFunctionBegin; 41436bd2089SBarry Smith if (col < row) { 4153ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41636bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41736bd2089SBarry Smith } 41836bd2089SBarry Smith rp = aj + ai[row]; 41936bd2089SBarry Smith ap = aa + bs2 * ai[row]; 42036bd2089SBarry Smith rmax = imax[row]; 42136bd2089SBarry Smith nrow = ailen[row]; 42236bd2089SBarry Smith value = v; 42336bd2089SBarry Smith low = 0; 42436bd2089SBarry Smith high = nrow; 42536bd2089SBarry Smith 42636bd2089SBarry Smith while (high - low > 7) { 42736bd2089SBarry Smith t = (low + high) / 2; 42836bd2089SBarry Smith if (rp[t] > col) high = t; 42936bd2089SBarry Smith else low = t; 43036bd2089SBarry Smith } 43136bd2089SBarry Smith for (i = low; i < high; i++) { 43236bd2089SBarry Smith if (rp[i] > col) break; 43336bd2089SBarry Smith if (rp[i] == col) { 43436bd2089SBarry Smith bap = ap + bs2 * i; 43536bd2089SBarry Smith if (roworiented) { 43636bd2089SBarry Smith if (is == ADD_VALUES) { 43736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 438ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43936bd2089SBarry Smith } 44036bd2089SBarry Smith } else { 44136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 442ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44336bd2089SBarry Smith } 44436bd2089SBarry Smith } 44536bd2089SBarry Smith } else { 44636bd2089SBarry Smith if (is == ADD_VALUES) { 44736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 448ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44936bd2089SBarry Smith } 45036bd2089SBarry Smith } else { 45136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 452ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45336bd2089SBarry Smith } 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith goto noinsert2; 45736bd2089SBarry Smith } 45836bd2089SBarry Smith } 45936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4605f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 46136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4629371c9d4SSatish Balay N = nrow++ - 1; 4639371c9d4SSatish Balay high++; 46436bd2089SBarry Smith /* shift up all the later entries in this row */ 4659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4669566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46736bd2089SBarry Smith rp[i] = col; 46836bd2089SBarry Smith bap = ap + bs2 * i; 46936bd2089SBarry Smith if (roworiented) { 47036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 471ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47236bd2089SBarry Smith } 47336bd2089SBarry Smith } else { 47436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 475ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } 47836bd2089SBarry Smith noinsert2:; 47936bd2089SBarry Smith ailen[row] = nrow; 4803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48136bd2089SBarry Smith } 48236bd2089SBarry Smith 48336bd2089SBarry Smith /* 48436bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48536bd2089SBarry Smith */ 486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 487d71ae5a4SJacob Faibussowitsch { 48836bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48936bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 49036bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 49136bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49236bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49336bd2089SBarry Smith const PetscScalar *value = v; 49436bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49536bd2089SBarry Smith 49636bd2089SBarry Smith PetscFunctionBegin; 49736bd2089SBarry Smith rp = aj + ai[row]; 49836bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49936bd2089SBarry Smith rmax = imax[row]; 50036bd2089SBarry Smith nrow = ailen[row]; 50136bd2089SBarry Smith low = 0; 50236bd2089SBarry Smith high = nrow; 50336bd2089SBarry Smith value = v; 50436bd2089SBarry Smith while (high - low > 7) { 50536bd2089SBarry Smith t = (low + high) / 2; 50636bd2089SBarry Smith if (rp[t] > col) high = t; 50736bd2089SBarry Smith else low = t; 50836bd2089SBarry Smith } 50936bd2089SBarry Smith for (i = low; i < high; i++) { 51036bd2089SBarry Smith if (rp[i] > col) break; 51136bd2089SBarry Smith if (rp[i] == col) { 51236bd2089SBarry Smith bap = ap + bs2 * i; 51336bd2089SBarry Smith if (roworiented) { 51436bd2089SBarry Smith if (is == ADD_VALUES) { 51536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 516ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } else { 51936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 520ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 52136bd2089SBarry Smith } 52236bd2089SBarry Smith } 52336bd2089SBarry Smith } else { 52436bd2089SBarry Smith if (is == ADD_VALUES) { 52536bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 526ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52736bd2089SBarry Smith bap += bs; 52836bd2089SBarry Smith } 52936bd2089SBarry Smith } else { 53036bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 531ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53236bd2089SBarry Smith bap += bs; 53336bd2089SBarry Smith } 53436bd2089SBarry Smith } 53536bd2089SBarry Smith } 53636bd2089SBarry Smith goto noinsert2; 53736bd2089SBarry Smith } 53836bd2089SBarry Smith } 53936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5405f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 54136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5429371c9d4SSatish Balay N = nrow++ - 1; 5439371c9d4SSatish Balay high++; 54436bd2089SBarry Smith /* shift up all the later entries in this row */ 5459566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5469566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54736bd2089SBarry Smith rp[i] = col; 54836bd2089SBarry Smith bap = ap + bs2 * i; 54936bd2089SBarry Smith if (roworiented) { 55036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 551ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55236bd2089SBarry Smith } 55336bd2089SBarry Smith } else { 55436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 555ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55636bd2089SBarry Smith } 55736bd2089SBarry Smith } 55836bd2089SBarry Smith noinsert2:; 55936bd2089SBarry Smith ailen[row] = nrow; 5603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56136bd2089SBarry Smith } 56236bd2089SBarry Smith 56336bd2089SBarry Smith /* 56436bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56536bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56636bd2089SBarry Smith */ 56766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 568d71ae5a4SJacob Faibussowitsch { 5690880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 570f15d580aSBarry Smith const MatScalar *value; 571f15d580aSBarry Smith MatScalar *barray = baij->barray; 572ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 573899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 574476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 575476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5760880e062SHong Zhang 577a30f8f8cSSatish Balay PetscFunctionBegin; 5780880e062SHong Zhang if (!barray) { 5799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5800880e062SHong Zhang baij->barray = barray; 5810880e062SHong Zhang } 5820880e062SHong Zhang 5830880e062SHong Zhang if (roworiented) { 5840880e062SHong Zhang stepval = (n - 1) * bs; 5850880e062SHong Zhang } else { 5860880e062SHong Zhang stepval = (m - 1) * bs; 5870880e062SHong Zhang } 5880880e062SHong Zhang for (i = 0; i < m; i++) { 5890880e062SHong Zhang if (im[i] < 0) continue; 5906bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5910880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5920880e062SHong Zhang row = im[i] - rstart; 5930880e062SHong Zhang for (j = 0; j < n; j++) { 594f3f98c53SJed Brown if (im[i] > in[j]) { 595f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 596e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 597f3f98c53SJed Brown } 5980880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5990880e062SHong Zhang if ((roworiented) && (n == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 6010880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 602f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6030880e062SHong Zhang } else { /* Here a copy is required */ 6040880e062SHong Zhang if (roworiented) { 6050880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6060880e062SHong Zhang } else { 6070880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6080880e062SHong Zhang } 6090880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 610ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6110880e062SHong Zhang } 6120880e062SHong Zhang barray -= bs2; 6130880e062SHong Zhang } 6140880e062SHong Zhang 6150880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6160880e062SHong Zhang col = in[j] - cstart; 6179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 618f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 619f7d195e4SLawrence Mitchell continue; 620f7d195e4SLawrence Mitchell } else { 621f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6220880e062SHong Zhang if (mat->was_assembled) { 62348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6240880e062SHong Zhang 6252515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6260880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6279371c9d4SSatish Balay { 6289371c9d4SSatish Balay PetscInt data; 629eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 63008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6310880e062SHong Zhang } 6320880e062SHong Zhang #else 63308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6340880e062SHong Zhang #endif 6350880e062SHong Zhang #endif 6360880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 637eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 6380880e062SHong Zhang col = (col - 1) / bs; 6390880e062SHong Zhang #else 6400880e062SHong Zhang col = (baij->colmap[in[j]] - 1) / bs; 6410880e062SHong Zhang #endif 6420880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 6439566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6440880e062SHong Zhang col = in[j]; 6450880e062SHong Zhang } 64626fbe8dcSKarl Rupp } else col = in[j]; 6479566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6480880e062SHong Zhang } 6490880e062SHong Zhang } 6500880e062SHong Zhang } else { 6515f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6520880e062SHong Zhang if (!baij->donotstash) { 6530880e062SHong Zhang if (roworiented) { 6549566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6550880e062SHong Zhang } else { 6569566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6570880e062SHong Zhang } 6580880e062SHong Zhang } 6590880e062SHong Zhang } 6600880e062SHong Zhang } 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 66466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 665d71ae5a4SJacob Faibussowitsch { 666f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 667d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 668d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay PetscFunctionBegin; 671a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 67254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 67354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 674a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 675a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 676a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 67754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 679a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 680a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 682a30f8f8cSSatish Balay } else { 68348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 685eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 686a30f8f8cSSatish Balay data--; 687a30f8f8cSSatish Balay #else 688a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 689a30f8f8cSSatish Balay #endif 690a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 691a30f8f8cSSatish Balay else { 692a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6939566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay } 697f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 698a30f8f8cSSatish Balay } 6993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay 70266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 703d71ae5a4SJacob Faibussowitsch { 704a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 705a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 706a30f8f8cSSatish Balay 707a30f8f8cSSatish Balay PetscFunctionBegin; 708a30f8f8cSSatish Balay if (baij->size == 1) { 7099566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 710a30f8f8cSSatish Balay } else { 711a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 7129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7139566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7149371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7159371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7169566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7179371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7189371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 7191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7208f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7220b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7230b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7240b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 7250b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 726899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 727d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7280b8dc8d2SHong Zhang MatScalar *v; 7290b8dc8d2SHong Zhang 7309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 7319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7320b8dc8d2SHong Zhang /* Amat */ 7339371c9d4SSatish Balay v = amat->a; 7349371c9d4SSatish Balay jj = amat->j; 7350b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7360b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7370b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7380b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7399371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7409371c9d4SSatish Balay jj++; 7410b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7420b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7439371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7449371c9d4SSatish Balay v++; 7450b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7460b8dc8d2SHong Zhang /* non-diagonal block */ 7470b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7480b8dc8d2SHong Zhang } 7490b8dc8d2SHong Zhang } 7500b8dc8d2SHong Zhang } 7519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7520b8dc8d2SHong Zhang } 7530b8dc8d2SHong Zhang /* Bmat */ 7549371c9d4SSatish Balay v = bmat->a; 7559371c9d4SSatish Balay jj = bmat->j; 7560b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7570b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7580b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7590b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7609371c9d4SSatish Balay gcol = bs * garray[*jj]; 7619371c9d4SSatish Balay jj++; 7620b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7630b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7649371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7659371c9d4SSatish Balay v++; 7660b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7670b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7680b8dc8d2SHong Zhang } 7690b8dc8d2SHong Zhang } 7700b8dc8d2SHong Zhang } 7719566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7720b8dc8d2SHong Zhang } 7731c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7740b8dc8d2SHong Zhang *norm = 0.0; 775d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7760b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7770b8dc8d2SHong Zhang } 7789566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 779f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 780a30f8f8cSSatish Balay } 7813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay 78466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 785d71ae5a4SJacob Faibussowitsch { 786a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7871302d50aSBarry Smith PetscInt nstash, reallocs; 788a30f8f8cSSatish Balay 789a30f8f8cSSatish Balay PetscFunctionBegin; 7903ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 791a30f8f8cSSatish Balay 7929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7949566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7959566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7969566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7979566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 799a30f8f8cSSatish Balay } 800a30f8f8cSSatish Balay 80166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 802d71ae5a4SJacob Faibussowitsch { 803a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 804a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 80513f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 806e44c0bd4SBarry Smith PetscInt *row, *col; 807ace3abfcSBarry Smith PetscBool other_disassembled; 80813f74950SBarry Smith PetscMPIInt n; 809ace3abfcSBarry Smith PetscBool r1, r2, r3; 810a30f8f8cSSatish Balay MatScalar *val; 811a30f8f8cSSatish Balay 81291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 813a30f8f8cSSatish Balay PetscFunctionBegin; 8144cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 815a30f8f8cSSatish Balay while (1) { 8169566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 817a30f8f8cSSatish Balay if (!flg) break; 818a30f8f8cSSatish Balay 819a30f8f8cSSatish Balay for (i = 0; i < n;) { 820a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 82126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 82226fbe8dcSKarl Rupp if (row[j] != rstart) break; 82326fbe8dcSKarl Rupp } 824a30f8f8cSSatish Balay if (j < n) ncols = j - i; 825a30f8f8cSSatish Balay else ncols = n - i; 826a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 828a30f8f8cSSatish Balay i = j; 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay } 8319566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 832a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8335e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 834a30f8f8cSSatish Balay restore the original flags */ 835a30f8f8cSSatish Balay r1 = baij->roworiented; 836a30f8f8cSSatish Balay r2 = a->roworiented; 83791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 83826fbe8dcSKarl Rupp 839a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 840a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 84126fbe8dcSKarl Rupp 84291c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 843a30f8f8cSSatish Balay while (1) { 8449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 845a30f8f8cSSatish Balay if (!flg) break; 846a30f8f8cSSatish Balay 847a30f8f8cSSatish Balay for (i = 0; i < n;) { 848a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 84926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 85026fbe8dcSKarl Rupp if (row[j] != rstart) break; 85126fbe8dcSKarl Rupp } 852a30f8f8cSSatish Balay if (j < n) ncols = j - i; 853a30f8f8cSSatish Balay else ncols = n - i; 8549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 855a30f8f8cSSatish Balay i = j; 856a30f8f8cSSatish Balay } 857a30f8f8cSSatish Balay } 8589566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 85926fbe8dcSKarl Rupp 860a30f8f8cSSatish Balay baij->roworiented = r1; 861a30f8f8cSSatish Balay a->roworiented = r2; 86226fbe8dcSKarl Rupp 86391c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay 8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 868a30f8f8cSSatish Balay 869a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8706aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 871a30f8f8cSSatish Balay /* 872a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 873a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 874a30f8f8cSSatish Balay */ 875a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8765f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 87748a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay 8809371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 883a30f8f8cSSatish Balay 8849566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 88526fbe8dcSKarl Rupp 886f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8874f9cfa9eSBarry Smith 8884f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8894f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 890e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 892e56f5c9eSBarry Smith } 8933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 896dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8979804daf3SBarry Smith #include <petscdraw.h> 898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 899d71ae5a4SJacob Faibussowitsch { 900a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 901d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 9027da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 903ace3abfcSBarry Smith PetscBool iascii, isdraw; 904b0a32e0cSBarry Smith PetscViewer sviewer; 905f3ef73ceSBarry Smith PetscViewerFormat format; 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay PetscFunctionBegin; 9089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 91032077d6dSBarry Smith if (iascii) { 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 912456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 913a30f8f8cSSatish Balay MatInfo info; 9149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9179371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9189371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9199566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9239566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9269566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 928fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 931c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay } 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay if (isdraw) { 937b0a32e0cSBarry Smith PetscDraw draw; 938ace3abfcSBarry Smith PetscBool isnull; 9399566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9409566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9413ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 942a30f8f8cSSatish Balay } 943a30f8f8cSSatish Balay 9447da1fb6eSBarry Smith { 945a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 946a30f8f8cSSatish Balay Mat A; 94765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 94865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 949d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 950a30f8f8cSSatish Balay MatScalar *a; 9513e219373SBarry Smith const char *matname; 952a30f8f8cSSatish Balay 953f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9549566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 955dd400576SPatrick Sanan if (rank == 0) { 9569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 957a30f8f8cSSatish Balay } else { 9589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 959a30f8f8cSSatish Balay } 9609566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9619566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9629566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 963a30f8f8cSSatish Balay 964a30f8f8cSSatish Balay /* copy over the A part */ 96565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9669371c9d4SSatish Balay ai = Aloc->i; 9679371c9d4SSatish Balay aj = Aloc->j; 9689371c9d4SSatish Balay a = Aloc->a; 9699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 970a30f8f8cSSatish Balay 971a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 972e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 974a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 975e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 976a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 97826fbe8dcSKarl Rupp col++; 97926fbe8dcSKarl Rupp a += bs; 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay /* copy over the B part */ 98465d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9859371c9d4SSatish Balay ai = Bloc->i; 9869371c9d4SSatish Balay aj = Bloc->j; 9879371c9d4SSatish Balay a = Bloc->a; 988a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 989e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 99026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 991a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 992a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 993a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9949566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 99526fbe8dcSKarl Rupp col++; 99626fbe8dcSKarl Rupp a += bs; 997a30f8f8cSSatish Balay } 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay } 10009566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 10029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 1003a30f8f8cSSatish Balay /* 1004a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 1005b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 1006a30f8f8cSSatish Balay */ 10079566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 100823a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1009dd400576SPatrick Sanan if (rank == 0) { 101023a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname)); 10119566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer)); 1012a30f8f8cSSatish Balay } 10139566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1015a30f8f8cSSatish Balay } 10163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1017a30f8f8cSSatish Balay } 1018a30f8f8cSSatish Balay 1019618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1020618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1021d1654148SHong Zhang 102266976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1023d71ae5a4SJacob Faibussowitsch { 1024ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1025a30f8f8cSSatish Balay 1026a30f8f8cSSatish Balay PetscFunctionBegin; 10279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1031d1654148SHong Zhang if (iascii || isdraw || issocket) { 10329566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10331baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1035a30f8f8cSSatish Balay } 1036a30f8f8cSSatish Balay 1037d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1038d71ae5a4SJacob Faibussowitsch { 1039547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1040eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10416de40e93SBarry Smith PetscScalar *from; 10426de40e93SBarry Smith const PetscScalar *x; 1043547795f9SHong Zhang 1044547795f9SHong Zhang PetscFunctionBegin; 1045547795f9SHong Zhang /* diagonal part */ 10469566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1047629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1048629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1049629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1050547795f9SHong Zhang 1051547795f9SHong Zhang /* subdiagonal part */ 10525f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10539566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1054547795f9SHong Zhang 1055547795f9SHong Zhang /* copy x into the vec slvec0 */ 10569566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10579566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1058547795f9SHong Zhang 10599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1062547795f9SHong Zhang 10639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10649566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1065547795f9SHong Zhang /* supperdiagonal part */ 10669566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1068547795f9SHong Zhang } 1069547795f9SHong Zhang 107066976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1071d71ae5a4SJacob Faibussowitsch { 1072a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1073eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1074d9ca1df4SBarry Smith PetscScalar *from; 1075d9ca1df4SBarry Smith const PetscScalar *x; 1076a9d4b620SHong Zhang 1077a9d4b620SHong Zhang PetscFunctionBegin; 1078a9d4b620SHong Zhang /* diagonal part */ 10799566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1080629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1081629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1082629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1083a9d4b620SHong Zhang 1084a9d4b620SHong Zhang /* subdiagonal part */ 10859566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1086fc165ae2SBarry Smith 1087a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10889566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10899566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1090a9d4b620SHong Zhang 10919566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10929566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1094fc165ae2SBarry Smith 10959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10969566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1097a9d4b620SHong Zhang /* supperdiagonal part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1100a9d4b620SHong Zhang } 1101a9d4b620SHong Zhang 110266976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 110366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1104d71ae5a4SJacob Faibussowitsch { 1105eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1106eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1107629a200eSBarry Smith PetscScalar *from; 1108eb1ec7c1SStefano Zampini const PetscScalar *x; 1109eb1ec7c1SStefano Zampini 1110eb1ec7c1SStefano Zampini PetscFunctionBegin; 1111eb1ec7c1SStefano Zampini /* diagonal part */ 11129566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1113629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1114629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1115eb1ec7c1SStefano Zampini 1116eb1ec7c1SStefano Zampini /* subdiagonal part */ 11175f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11189566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1119eb1ec7c1SStefano Zampini 1120eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11219566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11229566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1125eb1ec7c1SStefano Zampini 11269566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11289566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1129eb1ec7c1SStefano Zampini 1130eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1133eb1ec7c1SStefano Zampini } 113466976f2fSJacob Faibussowitsch #endif 1135eb1ec7c1SStefano Zampini 113666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1137d71ae5a4SJacob Faibussowitsch { 1138de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1139d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1140629a200eSBarry Smith PetscScalar *from; 1141d9ca1df4SBarry Smith const PetscScalar *x; 1142a9d4b620SHong Zhang 1143a9d4b620SHong Zhang PetscFunctionBegin; 1144a9d4b620SHong Zhang /* diagonal part */ 11459566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1146629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1147629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1148a9d4b620SHong Zhang 1149a9d4b620SHong Zhang /* subdiagonal part */ 11509566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1151a9d4b620SHong Zhang 1152a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11539566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11549566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11559566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1157a9d4b620SHong Zhang 11589566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11609566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1161a9d4b620SHong Zhang 1162a9d4b620SHong Zhang /* supperdiagonal part */ 11639566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1165a9d4b620SHong Zhang } 1166a9d4b620SHong Zhang 1167a30f8f8cSSatish Balay /* 1168a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1169a30f8f8cSSatish Balay diagonal block 1170a30f8f8cSSatish Balay */ 117166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1172d71ae5a4SJacob Faibussowitsch { 1173a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1174a30f8f8cSSatish Balay 1175a30f8f8cSSatish Balay PetscFunctionBegin; 117608401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11779566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1179a30f8f8cSSatish Balay } 1180a30f8f8cSSatish Balay 118166976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1182d71ae5a4SJacob Faibussowitsch { 1183a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1184a30f8f8cSSatish Balay 1185a30f8f8cSSatish Balay PetscFunctionBegin; 11869566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11879566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1189a30f8f8cSSatish Balay } 1190a30f8f8cSSatish Balay 119166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1192d71ae5a4SJacob Faibussowitsch { 1193d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1194d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1195d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1196d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1197899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1198d0d4cfc2SHong Zhang 1199a30f8f8cSSatish Balay PetscFunctionBegin; 12005f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1201d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1202d0d4cfc2SHong Zhang 1203d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1204d0d4cfc2SHong Zhang /* 1205d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1206d0d4cfc2SHong Zhang */ 1207d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1208d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1209d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1210d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1211d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 121226fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1213d0d4cfc2SHong Zhang } 12149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1215d0d4cfc2SHong Zhang } 1216d0d4cfc2SHong Zhang 12175f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1218d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1219d0d4cfc2SHong Zhang 12209371c9d4SSatish Balay pvA = &vworkA; 12219371c9d4SSatish Balay pcA = &cworkA; 12229371c9d4SSatish Balay pvB = &vworkB; 12239371c9d4SSatish Balay pcB = &cworkB; 12249371c9d4SSatish Balay if (!v) { 12259371c9d4SSatish Balay pvA = NULL; 12269371c9d4SSatish Balay pvB = NULL; 12279371c9d4SSatish Balay } 12289371c9d4SSatish Balay if (!idx) { 12299371c9d4SSatish Balay pcA = NULL; 12309371c9d4SSatish Balay if (!v) pcB = NULL; 12319371c9d4SSatish Balay } 12329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12339566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1234d0d4cfc2SHong Zhang nztot = nzA + nzB; 1235d0d4cfc2SHong Zhang 1236d0d4cfc2SHong Zhang cmap = mat->garray; 1237d0d4cfc2SHong Zhang if (v || idx) { 1238d0d4cfc2SHong Zhang if (nztot) { 1239d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1240d0d4cfc2SHong Zhang PetscInt imark = -1; 1241d0d4cfc2SHong Zhang if (v) { 1242d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1243d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1244d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1245d0d4cfc2SHong Zhang else break; 1246d0d4cfc2SHong Zhang } 1247d0d4cfc2SHong Zhang imark = i; 1248d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1249d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1250d0d4cfc2SHong Zhang } 1251d0d4cfc2SHong Zhang if (idx) { 1252d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1253d0d4cfc2SHong Zhang if (imark > -1) { 1254ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1255d0d4cfc2SHong Zhang } else { 1256d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 125726fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1258d0d4cfc2SHong Zhang else break; 1259d0d4cfc2SHong Zhang } 1260d0d4cfc2SHong Zhang imark = i; 1261d0d4cfc2SHong Zhang } 1262d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1263d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1264d0d4cfc2SHong Zhang } 1265d0d4cfc2SHong Zhang } else { 1266f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1267f4259b30SLisandro Dalcin if (v) *v = NULL; 1268d0d4cfc2SHong Zhang } 1269d0d4cfc2SHong Zhang } 1270d0d4cfc2SHong Zhang *nz = nztot; 12719566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12729566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1274a30f8f8cSSatish Balay } 1275a30f8f8cSSatish Balay 127666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1277d71ae5a4SJacob Faibussowitsch { 1278a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1279a30f8f8cSSatish Balay 1280a30f8f8cSSatish Balay PetscFunctionBegin; 12815f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1282a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1284a30f8f8cSSatish Balay } 1285a30f8f8cSSatish Balay 128666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1287d71ae5a4SJacob Faibussowitsch { 1288d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1289d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1290d0d4cfc2SHong Zhang 1291d0d4cfc2SHong Zhang PetscFunctionBegin; 1292d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1294d0d4cfc2SHong Zhang } 129566976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1296d71ae5a4SJacob Faibussowitsch { 1297d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1298d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1299d0d4cfc2SHong Zhang 1300d0d4cfc2SHong Zhang PetscFunctionBegin; 1301d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 13023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1303d0d4cfc2SHong Zhang } 1304d0d4cfc2SHong Zhang 130566976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1306d71ae5a4SJacob Faibussowitsch { 13075f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 13085f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13092726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 13102726fb6dSPierre Jolivet 13119566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13129566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13135f80ce2aSJacob Faibussowitsch } 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13152726fb6dSPierre Jolivet } 13162726fb6dSPierre Jolivet 131766976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1318d71ae5a4SJacob Faibussowitsch { 131999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 132099cafbc1SBarry Smith 132199cafbc1SBarry Smith PetscFunctionBegin; 13229566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13239566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132599cafbc1SBarry Smith } 132699cafbc1SBarry Smith 132766976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1328d71ae5a4SJacob Faibussowitsch { 132999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 133099cafbc1SBarry Smith 133199cafbc1SBarry Smith PetscFunctionBegin; 13329566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13339566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133599cafbc1SBarry Smith } 133699cafbc1SBarry Smith 13377dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 133836032a97SHong Zhang Input: isrow - distributed(parallel), 133936032a97SHong Zhang iscol_local - locally owned (seq) 134036032a97SHong Zhang */ 134166976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1342d71ae5a4SJacob Faibussowitsch { 13438f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13448f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 134536032a97SHong Zhang 134636032a97SHong Zhang PetscFunctionBegin; 134766976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13489566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 135066976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13518f46ffcaSHong Zhang 13529566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13548f46ffcaSHong Zhang 13559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13579566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13599566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13609566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13618f46ffcaSHong Zhang 13628f46ffcaSHong Zhang nmatch = 0; 13638f46ffcaSHong Zhang k = 0; 13648f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13658f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13668f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13679371c9d4SSatish Balay k = j; 13689371c9d4SSatish Balay nmatch++; 13698f46ffcaSHong Zhang break; 13708f46ffcaSHong Zhang } 13718f46ffcaSHong Zhang } 13728f46ffcaSHong Zhang } 13739566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13749566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13759566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13769566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13771098a8e8SHong Zhang if (nmatch < sz1) { 13781098a8e8SHong Zhang *flg = PETSC_FALSE; 13791098a8e8SHong Zhang } else { 13801098a8e8SHong Zhang *flg = PETSC_TRUE; 13811098a8e8SHong Zhang } 13823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13838f46ffcaSHong Zhang } 138436032a97SHong Zhang 138566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1386d71ae5a4SJacob Faibussowitsch { 1387fdfbdca6SPierre Jolivet Mat C[2]; 1388fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1389fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1390fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 139136032a97SHong Zhang 139236032a97SHong Zhang PetscFunctionBegin; 13939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1394fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 139536032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13969566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13975f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 139836032a97SHong Zhang } else { 13999566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 14009566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1401fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 14028f46ffcaSHong Zhang } 1403fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1404fdfbdca6SPierre Jolivet if (!isequal) { 1405fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1406fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1407fdfbdca6SPierre Jolivet if (!isidentity) { 1408fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1409fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1410fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1411fdfbdca6SPierre Jolivet } else { 1412fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1413fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1414fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1415fdfbdca6SPierre Jolivet } 1416fdfbdca6SPierre Jolivet } 1417fdfbdca6SPierre Jolivet } 14187dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1419fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1420fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14218f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1422fdfbdca6SPierre Jolivet IS intersect; 1423fdfbdca6SPierre Jolivet PetscInt ni; 1424fdfbdca6SPierre Jolivet 1425fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1426fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1427fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1428fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1429fdfbdca6SPierre Jolivet } 1430fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1431fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1432fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1433fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1434fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1435fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1436fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1437fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1438fdfbdca6SPierre Jolivet } 1439fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1440fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1441fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1442fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1443fdfbdca6SPierre Jolivet } 14449566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14468f46ffcaSHong Zhang } 14473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14488f46ffcaSHong Zhang } 14498f46ffcaSHong Zhang 145066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1451d71ae5a4SJacob Faibussowitsch { 1452a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1453a30f8f8cSSatish Balay 1454a30f8f8cSSatish Balay PetscFunctionBegin; 14559566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14569566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1458a30f8f8cSSatish Balay } 1459a30f8f8cSSatish Balay 146066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1461d71ae5a4SJacob Faibussowitsch { 1462a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1463a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14643966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1465a30f8f8cSSatish Balay 1466a30f8f8cSSatish Balay PetscFunctionBegin; 1467d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 146826fbe8dcSKarl Rupp 14699566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 147026fbe8dcSKarl Rupp 14719371c9d4SSatish Balay isend[0] = info->nz_used; 14729371c9d4SSatish Balay isend[1] = info->nz_allocated; 14739371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14749371c9d4SSatish Balay isend[3] = info->memory; 14759371c9d4SSatish Balay isend[4] = info->mallocs; 147626fbe8dcSKarl Rupp 14779566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 147826fbe8dcSKarl Rupp 14799371c9d4SSatish Balay isend[0] += info->nz_used; 14809371c9d4SSatish Balay isend[1] += info->nz_allocated; 14819371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14829371c9d4SSatish Balay isend[3] += info->memory; 14839371c9d4SSatish Balay isend[4] += info->mallocs; 1484a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1485a30f8f8cSSatish Balay info->nz_used = isend[0]; 1486a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1487a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1488a30f8f8cSSatish Balay info->memory = isend[3]; 1489a30f8f8cSSatish Balay info->mallocs = isend[4]; 1490a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 149226fbe8dcSKarl Rupp 1493a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1494a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1495a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1496a30f8f8cSSatish Balay info->memory = irecv[3]; 1497a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1498a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14991c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 150026fbe8dcSKarl Rupp 1501a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1502a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1503a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1504a30f8f8cSSatish Balay info->memory = irecv[3]; 1505a30f8f8cSSatish Balay info->mallocs = irecv[4]; 150698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1507a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1508a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1509a30f8f8cSSatish Balay info->factor_mallocs = 0; 15103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1511a30f8f8cSSatish Balay } 1512a30f8f8cSSatish Balay 151366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1514d71ae5a4SJacob Faibussowitsch { 1515a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1516d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1517a30f8f8cSSatish Balay 1518a30f8f8cSSatish Balay PetscFunctionBegin; 1519e98b92d7SKris Buschelman switch (op) { 1520512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1521e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 152228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1523a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1524c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1525e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 152643674050SBarry Smith MatCheckPreallocated(A, 1); 15279566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15289566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1529e98b92d7SKris Buschelman break; 1530e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 153143674050SBarry Smith MatCheckPreallocated(A, 1); 15324e0d8c25SBarry Smith a->roworiented = flg; 153326fbe8dcSKarl Rupp 15349566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15359566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1536e98b92d7SKris Buschelman break; 15378c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1538d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1539d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1540d71ae5a4SJacob Faibussowitsch break; 1541d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1542d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1543d71ae5a4SJacob Faibussowitsch break; 1544d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1545d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1546d71ae5a4SJacob Faibussowitsch break; 1547d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 1548d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1549d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15500f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1551eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1552547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1553eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1554eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1555eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1556b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1557eb1ec7c1SStefano Zampini } 15580f2140c7SStefano Zampini #endif 1559eeffb40dSHong Zhang break; 1560ffa07934SHong Zhang case MAT_SPD: 1561d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 1562d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1563d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1564eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1565eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1566eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1567eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1568eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1569eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1570eb1ec7c1SStefano Zampini } 1571eb1ec7c1SStefano Zampini #endif 1572eeffb40dSHong Zhang break; 157377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 157443674050SBarry Smith MatCheckPreallocated(A, 1); 15759566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1576eeffb40dSHong Zhang break; 15779a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1578b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15795f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 15809566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 158177e54ba9SKris Buschelman break; 1582d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 1583d71ae5a4SJacob Faibussowitsch break; 1584d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1585d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1586d71ae5a4SJacob Faibussowitsch break; 1587d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1588d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1589d71ae5a4SJacob Faibussowitsch break; 1590d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1591d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1592d71ae5a4SJacob Faibussowitsch break; 1593d71ae5a4SJacob Faibussowitsch default: 1594d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1595a30f8f8cSSatish Balay } 15963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1597a30f8f8cSSatish Balay } 1598a30f8f8cSSatish Balay 159966976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1600d71ae5a4SJacob Faibussowitsch { 1601a30f8f8cSSatish Balay PetscFunctionBegin; 16027fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1603cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 16049566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1605cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 16069566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1607fc4dec0aSBarry Smith } 16083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1609a30f8f8cSSatish Balay } 1610a30f8f8cSSatish Balay 161166976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1612d71ae5a4SJacob Faibussowitsch { 1613a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1614a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 16155e90f9d9SHong Zhang PetscInt nv, m, n; 1616ace3abfcSBarry Smith PetscBool flg; 1617a30f8f8cSSatish Balay 1618a30f8f8cSSatish Balay PetscFunctionBegin; 1619a30f8f8cSSatish Balay if (ll != rr) { 16209566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 16215f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1622a30f8f8cSSatish Balay } 16233ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1624b3bf805bSHong Zhang 16259566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 16265f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1627b3bf805bSHong Zhang 16289566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 16295f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 16305e90f9d9SHong Zhang 16319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16325e90f9d9SHong Zhang 16335e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1634dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16355e90f9d9SHong Zhang 16365e90f9d9SHong Zhang /* scale the diagonal part */ 1637dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1638a30f8f8cSSatish Balay 16395e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16409566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1641dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1643a30f8f8cSSatish Balay } 1644a30f8f8cSSatish Balay 164566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1646d71ae5a4SJacob Faibussowitsch { 1647f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1648a30f8f8cSSatish Balay 1649a30f8f8cSSatish Balay PetscFunctionBegin; 16509566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1652a30f8f8cSSatish Balay } 1653a30f8f8cSSatish Balay 16546849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1655a30f8f8cSSatish Balay 165666976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1657d71ae5a4SJacob Faibussowitsch { 1658a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1659a30f8f8cSSatish Balay Mat a, b, c, d; 1660ace3abfcSBarry Smith PetscBool flg; 1661a30f8f8cSSatish Balay 1662a30f8f8cSSatish Balay PetscFunctionBegin; 16639371c9d4SSatish Balay a = matA->A; 16649371c9d4SSatish Balay b = matA->B; 16659371c9d4SSatish Balay c = matB->A; 16669371c9d4SSatish Balay d = matB->B; 1667a30f8f8cSSatish Balay 16689566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 166948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 16701c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1672a30f8f8cSSatish Balay } 1673a30f8f8cSSatish Balay 167466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1675d71ae5a4SJacob Faibussowitsch { 16764c7a3774SStefano Zampini PetscBool isbaij; 16773c896bc6SHong Zhang 16783c896bc6SHong Zhang PetscFunctionBegin; 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16805f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16813c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16823c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16839566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16849566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16859566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16863c896bc6SHong Zhang } else { 16874c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16884c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16894c7a3774SStefano Zampini 16909566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16919566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16923c896bc6SHong Zhang } 16939566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16953c896bc6SHong Zhang } 16963c896bc6SHong Zhang 169766976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1698d71ae5a4SJacob Faibussowitsch { 16994fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 17004fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 17014fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 17024fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 17034fe895cdSHong Zhang 17044fe895cdSHong Zhang PetscFunctionBegin; 17054fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17064fe895cdSHong Zhang PetscScalar alpha = a; 17074fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 17084fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 17099566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1710792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 17114fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 17124fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 17139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1714792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 17159566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1716ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 17179566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 17189566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 17199566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 17204fe895cdSHong Zhang } else { 17214de5dceeSHong Zhang Mat B; 17224de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 17235f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 17249566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 17259566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 17269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 17279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 17289566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 17299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 17309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 17319566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 17329566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17339566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17349566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17359566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17369566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17379566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17389566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17399566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17419566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17424fe895cdSHong Zhang } 17433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17444fe895cdSHong Zhang } 17454fe895cdSHong Zhang 174666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1747d71ae5a4SJacob Faibussowitsch { 17481302d50aSBarry Smith PetscInt i; 1749afebec48SHong Zhang PetscBool flg; 1750a5e6ed63SBarry Smith 17516849ba73SBarry Smith PetscFunctionBegin; 17529566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1753a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17549566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 175548a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17564dcd73b1SHong Zhang } 17573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1758a5e6ed63SBarry Smith } 1759a5e6ed63SBarry Smith 176066976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1761d71ae5a4SJacob Faibussowitsch { 17627d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17636f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17647d68702bSBarry Smith 17657d68702bSBarry Smith PetscFunctionBegin; 17666f33a894SBarry Smith if (!Y->preallocated) { 17679566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17686f33a894SBarry Smith } else if (!aij->nz) { 1769b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17709566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1771b83222d8SBarry Smith aij->nonew = nonew; 17727d68702bSBarry Smith } 17739566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17757d68702bSBarry Smith } 17767d68702bSBarry Smith 177766976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1778d71ae5a4SJacob Faibussowitsch { 17793b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17803b49f96aSBarry Smith 17813b49f96aSBarry Smith PetscFunctionBegin; 17825f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17839566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17843b49f96aSBarry Smith if (d) { 17853b49f96aSBarry Smith PetscInt rstart; 17869566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17873b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17883b49f96aSBarry Smith } 17893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17903b49f96aSBarry Smith } 17913b49f96aSBarry Smith 179266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1793d71ae5a4SJacob Faibussowitsch { 1794a5b7ff6bSBarry Smith PetscFunctionBegin; 1795a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1797a5b7ff6bSBarry Smith } 17983b49f96aSBarry Smith 179917ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 180017ea310bSPierre Jolivet { 180117ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 180217ea310bSPierre Jolivet 180317ea310bSPierre Jolivet PetscFunctionBegin; 180417ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 180517ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 180617ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 180717ea310bSPierre Jolivet } 180817ea310bSPierre Jolivet 18093964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1810a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1811a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1812a9d4b620SHong Zhang MatMult_MPISBAIJ, 181397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1814431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1815431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin /* 10*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 182241f059aeSBarry Smith MatSOR_MPISBAIJ, 1823a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 182497304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1825a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1826a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1827a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1828a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 182997304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1830a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1831a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1832a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1833f4259b30SLisandro Dalcin /* 24*/ NULL, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 183826cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1842f4259b30SLisandro Dalcin NULL, 1843d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1844f4259b30SLisandro Dalcin NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18497dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1850d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1851a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18523c896bc6SHong Zhang MatCopy_MPISBAIJ, 1853f4259b30SLisandro Dalcin /* 44*/ NULL, 1854a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18557d68702bSBarry Smith MatShift_MPISBAIJ, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin /* 49*/ NULL, 1859f4259b30SLisandro Dalcin NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin /* 54*/ NULL, 1864f4259b30SLisandro Dalcin NULL, 1865a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1866f4259b30SLisandro Dalcin NULL, 1867a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18687dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin /* 64*/ NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1879f4259b30SLisandro Dalcin NULL, 188028d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin /* 74*/ NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin /* 79*/ NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 18925bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1893f4259b30SLisandro Dalcin /* 84*/ NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin /* 89*/ NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin /* 94*/ NULL, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin /* 99*/ NULL, 1909f4259b30SLisandro Dalcin NULL, 1910f4259b30SLisandro Dalcin NULL, 19112726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1912f4259b30SLisandro Dalcin NULL, 1913f4259b30SLisandro Dalcin /*104*/ NULL, 191499cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1915d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1916d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 191795936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1918f4259b30SLisandro Dalcin /*109*/ NULL, 1919f4259b30SLisandro Dalcin NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin NULL, 19223b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1923f4259b30SLisandro Dalcin /*114*/ NULL, 1924f4259b30SLisandro Dalcin NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 1928f4259b30SLisandro Dalcin /*119*/ NULL, 1929f4259b30SLisandro Dalcin NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin /*124*/ NULL, 1934f4259b30SLisandro Dalcin NULL, 1935f4259b30SLisandro Dalcin NULL, 1936f4259b30SLisandro Dalcin NULL, 1937f4259b30SLisandro Dalcin NULL, 1938f4259b30SLisandro Dalcin /*129*/ NULL, 1939f4259b30SLisandro Dalcin NULL, 1940f4259b30SLisandro Dalcin NULL, 1941f4259b30SLisandro Dalcin NULL, 1942f4259b30SLisandro Dalcin NULL, 1943f4259b30SLisandro Dalcin /*134*/ NULL, 1944f4259b30SLisandro Dalcin NULL, 1945f4259b30SLisandro Dalcin NULL, 1946f4259b30SLisandro Dalcin NULL, 1947f4259b30SLisandro Dalcin NULL, 194846533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1949f4259b30SLisandro Dalcin NULL, 1950f4259b30SLisandro Dalcin NULL, 1951f4259b30SLisandro Dalcin NULL, 1952f4259b30SLisandro Dalcin NULL, 1953d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1954d70f29a3SPierre Jolivet NULL, 1955d70f29a3SPierre Jolivet NULL, 195699a7f59eSMark Adams NULL, 195799a7f59eSMark Adams NULL, 19587fb60732SBarry Smith NULL, 1959dec0b466SHong Zhang /*150*/ NULL, 1960eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 1961eede4a3fSMark Adams NULL}; 1962a30f8f8cSSatish Balay 196366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1964d71ae5a4SJacob Faibussowitsch { 1965476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1966535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19675d2a9ed1SStefano Zampini PetscMPIInt size; 1968a23d5eceSKris Buschelman 1969a23d5eceSKris Buschelman PetscFunctionBegin; 1970ad79cf63SBarry Smith if (B->hash_active) { 1971aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1972ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1973ad79cf63SBarry Smith } 1974ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 19759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 19769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19789566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19795f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19805f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1981899cda47SBarry Smith 1982d0f46423SBarry Smith mbs = B->rmap->n / bs; 1983d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19845f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1985a23d5eceSKris Buschelman 1986d0f46423SBarry Smith B->rmap->bs = bs; 1987a23d5eceSKris Buschelman b->bs2 = bs * bs; 1988a23d5eceSKris Buschelman b->mbs = mbs; 1989a23d5eceSKris Buschelman b->Mbs = Mbs; 1990de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1991de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1992a23d5eceSKris Buschelman 1993ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1994d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1995d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1996a23d5eceSKris Buschelman 1997d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1998d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1999a23d5eceSKris Buschelman 2000cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2001eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2002cb7b82ddSBarry Smith #else 20039566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2004cb7b82ddSBarry Smith #endif 20059566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 20069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 20079566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 20089566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 20099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 20109566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 20119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 20129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 20139566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 2014cb7b82ddSBarry Smith 20159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2016c508b908SBarry Smith 2017c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 20189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 20199566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 20209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 20219566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2022c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2023cb7b82ddSBarry Smith 2024c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2025ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 20269566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 20279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 20289566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 2029c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2030a23d5eceSKris Buschelman 20319566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 20329566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 203326fbe8dcSKarl Rupp 2034526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2035cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2036cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 20373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2038a23d5eceSKris Buschelman } 2039a23d5eceSKris Buschelman 204066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2041d71ae5a4SJacob Faibussowitsch { 204202106b30SBarry Smith PetscInt m, rstart, cend; 2043f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2044f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2045f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2046bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20473bd0feecSPierre Jolivet PetscBool nooffprocentries; 2048dfb205c3SBarry Smith 2049dfb205c3SBarry Smith PetscFunctionBegin; 20505f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20519566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20549566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20559566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2056dfb205c3SBarry Smith m = B->rmap->n / bs; 2057dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2058dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2059dfb205c3SBarry Smith 20605f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20619566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2062dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2063dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20645f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20654cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2066dfb205c3SBarry Smith JJ = jj + ii[i]; 20670cd7f59aSBarry Smith bd = 0; 2068dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20690cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2070dfb205c3SBarry Smith JJ++; 20710cd7f59aSBarry Smith bd++; 2072dfb205c3SBarry Smith } 2073dfb205c3SBarry Smith d = 0; 2074dfb205c3SBarry Smith for (; j < nz; j++) { 2075dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2076dfb205c3SBarry Smith d++; 2077dfb205c3SBarry Smith } 2078dfb205c3SBarry Smith d_nnz[i] = d; 20790cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20800cd7f59aSBarry Smith nz = nz - bd; 20810cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2082dfb205c3SBarry Smith } 20839566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20849566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20859566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2086dfb205c3SBarry Smith 2087dfb205c3SBarry Smith values = (PetscScalar *)V; 208848a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2089dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2090dfb205c3SBarry Smith PetscInt row = i + rstart; 2091dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2092dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2093bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2094dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20959566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2096bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2097bb80cfbbSStefano Zampini PetscInt j; 20980cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20990cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 21009566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 21010cd7f59aSBarry Smith } 21020cd7f59aSBarry Smith } 2103dfb205c3SBarry Smith } 2104dfb205c3SBarry Smith 21059566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 21063bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 21073bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 21089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21103bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 21113bd0feecSPierre Jolivet 21129566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 21133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2114dfb205c3SBarry Smith } 2115dfb205c3SBarry Smith 21160bad9183SKris Buschelman /*MC 2117fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2118828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2119828413b8SBarry Smith the matrix is stored. 2120828413b8SBarry Smith 2121828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 212211a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 21230bad9183SKris Buschelman 21242ef1f0ffSBarry Smith Options Database Key: 212511a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 21260bad9183SKris Buschelman 21272ef1f0ffSBarry Smith Level: beginner 21282ef1f0ffSBarry Smith 212911a5261eSBarry Smith Note: 2130476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2131476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2132476417e5SBarry Smith 21331cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 21340bad9183SKris Buschelman M*/ 21350bad9183SKris Buschelman 2136d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2137d71ae5a4SJacob Faibussowitsch { 2138b5df2d14SHong Zhang Mat_MPISBAIJ *b; 213994ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2140b5df2d14SHong Zhang 2141b5df2d14SHong Zhang PetscFunctionBegin; 21424dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2143b0a32e0cSBarry Smith B->data = (void *)b; 2144aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2145b5df2d14SHong Zhang 2146b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2147b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2148b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2149b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 215026fbe8dcSKarl Rupp 21519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2153b5df2d14SHong Zhang 2154b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2156b5df2d14SHong Zhang 2157b5df2d14SHong Zhang /* build cache for off array entries formed */ 21589566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 215926fbe8dcSKarl Rupp 2160b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21610298fd71SBarry Smith b->colmap = NULL; 21620298fd71SBarry Smith b->garray = NULL; 2163b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2164b5df2d14SHong Zhang 2165b5df2d14SHong Zhang /* stuff used in block assembly */ 2166f4259b30SLisandro Dalcin b->barray = NULL; 2167b5df2d14SHong Zhang 2168b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2169f4259b30SLisandro Dalcin b->lvec = NULL; 2170f4259b30SLisandro Dalcin b->Mvctx = NULL; 2171f4259b30SLisandro Dalcin b->slvec0 = NULL; 2172f4259b30SLisandro Dalcin b->slvec0b = NULL; 2173f4259b30SLisandro Dalcin b->slvec1 = NULL; 2174f4259b30SLisandro Dalcin b->slvec1a = NULL; 2175f4259b30SLisandro Dalcin b->slvec1b = NULL; 2176f4259b30SLisandro Dalcin b->sMvctx = NULL; 2177b5df2d14SHong Zhang 2178b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2179f4259b30SLisandro Dalcin b->rowindices = NULL; 2180f4259b30SLisandro Dalcin b->rowvalues = NULL; 2181b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2182b5df2d14SHong Zhang 2183b5df2d14SHong Zhang /* hash table stuff */ 2184f4259b30SLisandro Dalcin b->ht = NULL; 2185f4259b30SLisandro Dalcin b->hd = NULL; 2186b5df2d14SHong Zhang b->ht_size = 0; 2187b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2188b5df2d14SHong Zhang b->ht_fact = 0; 2189b5df2d14SHong Zhang b->ht_total_ct = 0; 2190b5df2d14SHong Zhang b->ht_insert_ct = 0; 2191b5df2d14SHong Zhang 21927dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21937a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21947a868f3eSHong Zhang 2195f4259b30SLisandro Dalcin b->in_loc = NULL; 2196f4259b30SLisandro Dalcin b->v_loc = NULL; 219759ffdab8SBarry Smith b->n_loc = 0; 219894ae4db5SBarry Smith 21999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 22009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 22019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 22029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 22036214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 22049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 22056214f412SHong Zhang #endif 2206d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 22079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2208d24d4204SJose E. Roman #endif 22099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 22109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2211aa5a9175SDahai Guo 2212b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2213b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2214b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2215b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2216eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2217b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2218eb1ec7c1SStefano Zampini #else 2219b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2220eb1ec7c1SStefano Zampini #endif 222113647f61SHong Zhang 22229566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2223d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 22249566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 222594ae4db5SBarry Smith if (flg) { 222694ae4db5SBarry Smith PetscReal fact = 1.39; 22279566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 22289566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 222994ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 22309566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 22319566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 223294ae4db5SBarry Smith } 2233d0609cedSBarry Smith PetscOptionsEnd(); 22343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2235b5df2d14SHong Zhang } 2236b5df2d14SHong Zhang 22372920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2238209238afSKris Buschelman /*MC 2239002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2240209238afSKris Buschelman 224111a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 224211a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2243209238afSKris Buschelman 224411a5261eSBarry Smith Options Database Key: 2245c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2246209238afSKris Buschelman 2247209238afSKris Buschelman Level: beginner 2248209238afSKris Buschelman 22491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2250209238afSKris Buschelman M*/ 2251209238afSKris Buschelman 2252b5df2d14SHong Zhang /*@C 2253b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2254b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2255b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2256b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2257b5df2d14SHong Zhang 2258c3339decSBarry Smith Collective 2259b5df2d14SHong Zhang 2260b5df2d14SHong Zhang Input Parameters: 22611c4f3114SJed Brown + B - the matrix 2262bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2263bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2264b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2265b5df2d14SHong Zhang submatrix (same for all local rows) 2266b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22676d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22682ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 226995742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2270b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2271b5df2d14SHong Zhang submatrix (same for all local rows). 2272b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2273c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22742ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2275b5df2d14SHong Zhang 2276b5df2d14SHong Zhang Options Database Keys: 2277a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2278b5df2d14SHong Zhang block calculations (much slower) 2279a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2280b5df2d14SHong Zhang 22812ef1f0ffSBarry Smith Level: intermediate 22822ef1f0ffSBarry Smith 2283b5df2d14SHong Zhang Notes: 2284b5df2d14SHong Zhang 228511a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2286b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2287b5df2d14SHong Zhang 228849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 228949a6f317SBarry Smith 2290b5df2d14SHong Zhang Storage Information: 2291b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2292b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2293b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2294b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2295b5df2d14SHong Zhang 2296b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22972ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22982ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2299b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 23002ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2301b5df2d14SHong Zhang 230211a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2303aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 23042ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2305aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2306aa95bbe8SBarry Smith 2307b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2308b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2309b5df2d14SHong Zhang 2310b5df2d14SHong Zhang .vb 2311b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2312a4b1a0f6SJed Brown -------------------------- 2313c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2314c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2315c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2316a4b1a0f6SJed Brown -------------------------- 2317b5df2d14SHong Zhang .ve 2318b5df2d14SHong Zhang 2319b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2320b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23216d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 232211a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2323b5df2d14SHong Zhang 23242ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23256d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23262ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2327c2fc9fa9SBarry Smith 2328b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 23292ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2330b5df2d14SHong Zhang 23311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2332b5df2d14SHong Zhang @*/ 2333d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2334d71ae5a4SJacob Faibussowitsch { 2335b5df2d14SHong Zhang PetscFunctionBegin; 23366ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23376ba663aaSJed Brown PetscValidType(B, 1); 23386ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2339cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 23403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2341b5df2d14SHong Zhang } 2342b5df2d14SHong Zhang 23432920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2344a30f8f8cSSatish Balay /*@C 234511a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2346a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2347a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 234820f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2349a30f8f8cSSatish Balay 2350d083f849SBarry Smith Collective 2351a30f8f8cSSatish Balay 2352a30f8f8cSSatish Balay Input Parameters: 2353a30f8f8cSSatish Balay + comm - MPI communicator 235411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 235520f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 235620f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2357a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2358a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 235920f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2360a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2361a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 236220f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 236320f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2364a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2365a30f8f8cSSatish Balay submatrix (same for all local rows) 2366a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23676d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23682ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 236995742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 237095742e49SBarry Smith set its value even if it is zero. 2371a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2372a30f8f8cSSatish Balay submatrix (same for all local rows). 2373a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2374a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23752ef1f0ffSBarry Smith each block row) or `NULL`. 2376a30f8f8cSSatish Balay 2377a30f8f8cSSatish Balay Output Parameter: 2378a30f8f8cSSatish Balay . A - the matrix 2379a30f8f8cSSatish Balay 2380a30f8f8cSSatish Balay Options Database Keys: 2381a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2382a30f8f8cSSatish Balay block calculations (much slower) 2383a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2384a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2385a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2386a30f8f8cSSatish Balay 23872ef1f0ffSBarry Smith Level: intermediate 23882ef1f0ffSBarry Smith 23892ef1f0ffSBarry Smith Notes: 239077433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2391f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 239211a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2393175b88e8SBarry Smith 2394d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23956d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2396d1be2dadSMatthew Knepley 2397a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2398a30f8f8cSSatish Balay (possibly both). 2399a30f8f8cSSatish Balay 240011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2401a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2402a30f8f8cSSatish Balay 240349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 240449a6f317SBarry Smith 2405a30f8f8cSSatish Balay Storage Information: 2406a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2407a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2408a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2409a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2410a30f8f8cSSatish Balay 2411a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 24122ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 24132ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2414a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 24152ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2416a30f8f8cSSatish Balay 2417a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2418a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2419a30f8f8cSSatish Balay 2420a30f8f8cSSatish Balay .vb 2421a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2422a4b1a0f6SJed Brown -------------------------- 2423c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2424c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2425c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2426a4b1a0f6SJed Brown -------------------------- 2427a30f8f8cSSatish Balay .ve 2428a30f8f8cSSatish Balay 2429a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2430a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24316d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24322ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2433a30f8f8cSSatish Balay 24342ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 24356d10fdaeSSatish Balay plus the diagonal part of the d matrix, 24362ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2437a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 24382ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2439a30f8f8cSSatish Balay 24401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2441a30f8f8cSSatish Balay @*/ 2442d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2443d71ae5a4SJacob Faibussowitsch { 24441302d50aSBarry Smith PetscMPIInt size; 2445a30f8f8cSSatish Balay 2446a30f8f8cSSatish Balay PetscFunctionBegin; 24479566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2450273d9f13SBarry Smith if (size > 1) { 24519566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24529566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2453273d9f13SBarry Smith } else { 24549566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24559566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2456273d9f13SBarry Smith } 24573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2458a30f8f8cSSatish Balay } 2459a30f8f8cSSatish Balay 2460d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2461d71ae5a4SJacob Faibussowitsch { 2462a30f8f8cSSatish Balay Mat mat; 2463a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2464d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2465387bc808SHong Zhang PetscScalar *array; 2466a30f8f8cSSatish Balay 2467a30f8f8cSSatish Balay PetscFunctionBegin; 2468f4259b30SLisandro Dalcin *newmat = NULL; 246926fbe8dcSKarl Rupp 24709566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24729566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24739566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24749566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2475e1b6402fSHong Zhang 2476420957c1SBarry Smith if (matin->hash_active) { 2477420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2478420957c1SBarry Smith } else { 2479d5f3da31SBarry Smith mat->factortype = matin->factortype; 2480273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 248182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24827fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24837fff6886SHong Zhang 2484b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2485a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2486a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2487a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2488a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2489a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2490a30f8f8cSSatish Balay 2491a30f8f8cSSatish Balay a->size = oldmat->size; 2492a30f8f8cSSatish Balay a->rank = oldmat->rank; 2493a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2494a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2495f4259b30SLisandro Dalcin a->rowindices = NULL; 2496f4259b30SLisandro Dalcin a->rowvalues = NULL; 2497a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2498f4259b30SLisandro Dalcin a->barray = NULL; 2499899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2500899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2501899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2502899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2503a30f8f8cSSatish Balay 2504a30f8f8cSSatish Balay /* hash table stuff */ 2505f4259b30SLisandro Dalcin a->ht = NULL; 2506f4259b30SLisandro Dalcin a->hd = NULL; 2507a30f8f8cSSatish Balay a->ht_size = 0; 2508a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2509a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2510a30f8f8cSSatish Balay a->ht_total_ct = 0; 2511a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2512a30f8f8cSSatish Balay 25139566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2514a30f8f8cSSatish Balay if (oldmat->colmap) { 2515a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2516eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2517a30f8f8cSSatish Balay #else 25189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 25199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2520a30f8f8cSSatish Balay #endif 2521f4259b30SLisandro Dalcin } else a->colmap = NULL; 2522387bc808SHong Zhang 2523a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 25249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 25259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2526f4259b30SLisandro Dalcin } else a->garray = NULL; 2527a30f8f8cSSatish Balay 25289566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 25299566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 25309566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 253182327fa8SHong Zhang 25329566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 25339566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2534387bc808SHong Zhang 25359566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 25369566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 25379566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 25389566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 25399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 25409566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 25419566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 25429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2543387bc808SHong Zhang 2544387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25459566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2546387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 254782327fa8SHong Zhang 25489566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25499566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2550420957c1SBarry Smith } 25519566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2552a30f8f8cSSatish Balay *newmat = mat; 25533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2554a30f8f8cSSatish Balay } 2555a30f8f8cSSatish Balay 2556618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2557618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2558618cc2edSLisandro Dalcin 2559d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2560d71ae5a4SJacob Faibussowitsch { 25617f489da9SVaclav Hapla PetscBool isbinary; 256295936485SShri Abhyankar 256395936485SShri Abhyankar PetscFunctionBegin; 25649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25655f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25669566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 256895936485SShri Abhyankar } 256995936485SShri Abhyankar 2570d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2571d71ae5a4SJacob Faibussowitsch { 257224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2573f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(a->B)->data; 2574ca54ac64SHong Zhang PetscReal atmp; 257587828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25761302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25771302d50aSBarry Smith PetscMPIInt rank, size; 25781302d50aSBarry Smith PetscInt *rowners_bs, dest, count, source; 257987828ca2SBarry Smith PetscScalar *va; 25808a1c53f2SBarry Smith MatScalar *ba; 2581f4c0e9e4SHong Zhang MPI_Status stat; 258224d5174aSHong Zhang 258324d5174aSHong Zhang PetscFunctionBegin; 25845f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25859566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25869566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2587f4c0e9e4SHong Zhang 25889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2590f4c0e9e4SHong Zhang 2591d0f46423SBarry Smith bs = A->rmap->bs; 2592f4c0e9e4SHong Zhang mbs = a->mbs; 2593f4c0e9e4SHong Zhang Mbs = a->Mbs; 2594f4c0e9e4SHong Zhang ba = b->a; 2595f4c0e9e4SHong Zhang bi = b->i; 2596f4c0e9e4SHong Zhang bj = b->j; 2597f4c0e9e4SHong Zhang 2598f4c0e9e4SHong Zhang /* find ownerships */ 2599d0f46423SBarry Smith rowners_bs = A->rmap->range; 2600f4c0e9e4SHong Zhang 2601f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 26029566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2603f4c0e9e4SHong Zhang 2604f4c0e9e4SHong Zhang /* row_max for B */ 2605b8475685SHong Zhang if (rank != size - 1) { 2606f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 26079371c9d4SSatish Balay ncols = bi[1] - bi[0]; 26089371c9d4SSatish Balay bi++; 2609f4c0e9e4SHong Zhang brow = bs * i; 2610f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2611f4c0e9e4SHong Zhang bcol = bs * (*bj); 2612f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2613ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 261404d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2615f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 26169371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 26179371c9d4SSatish Balay ba++; 2618ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2619ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2620f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2621f4c0e9e4SHong Zhang } 2622f4c0e9e4SHong Zhang } 2623f4c0e9e4SHong Zhang bj++; 2624f4c0e9e4SHong Zhang } 2625f4c0e9e4SHong Zhang } 2626f4c0e9e4SHong Zhang 2627f4c0e9e4SHong Zhang /* send values to its owners */ 2628f4c0e9e4SHong Zhang for (dest = rank + 1; dest < size; dest++) { 2629f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2630ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 26319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2632ca54ac64SHong Zhang } 2633f4c0e9e4SHong Zhang } 2634f4c0e9e4SHong Zhang 2635f4c0e9e4SHong Zhang /* receive values */ 2636ca54ac64SHong Zhang if (rank) { 2637f4c0e9e4SHong Zhang rvalues = work; 2638ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2639f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 26409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2641f4c0e9e4SHong Zhang /* process values */ 2642f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2643ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2644f4c0e9e4SHong Zhang } 2645f4c0e9e4SHong Zhang } 2646ca54ac64SHong Zhang } 2647f4c0e9e4SHong Zhang 26489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26499566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 265124d5174aSHong Zhang } 26522798e883SHong Zhang 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2654d71ae5a4SJacob Faibussowitsch { 26552798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2656d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26573649974fSBarry Smith PetscScalar *x, *ptr, *from; 2658ffe4fb16SHong Zhang Vec bb1; 26593649974fSBarry Smith const PetscScalar *b; 2660ffe4fb16SHong Zhang 2661ffe4fb16SHong Zhang PetscFunctionBegin; 26625f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26635f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2664ffe4fb16SHong Zhang 2665a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2668a2b30743SBarry Smith } 2669a2b30743SBarry Smith 2670ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2671ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26729566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2673ffe4fb16SHong Zhang its--; 2674ffe4fb16SHong Zhang } 2675ffe4fb16SHong Zhang 26769566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2677ffe4fb16SHong Zhang while (its--) { 2678ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26799566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2680ffe4fb16SHong Zhang 2681ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26829566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26839566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26849566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26859566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2686ffe4fb16SHong Zhang 26879566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2688ffe4fb16SHong Zhang 2689ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26909566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2694ffe4fb16SHong Zhang 2695ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2696629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2697629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2698ffe4fb16SHong Zhang 26999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27019566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2703ffe4fb16SHong Zhang 2704ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 27059566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2706ffe4fb16SHong Zhang 2707ffe4fb16SHong Zhang /* local diagonal sweep */ 27089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2709ffe4fb16SHong Zhang } 27109566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2711fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2713fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2715fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2716fa22f6d0SBarry Smith Vec xx1; 2717ace3abfcSBarry Smith PetscBool hasop; 271820f1ed55SBarry Smith const PetscScalar *diag; 2719887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 272020f1ed55SBarry Smith PetscInt i, n; 2721fa22f6d0SBarry Smith 2722fa22f6d0SBarry Smith if (!mat->xx1) { 27239566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 27249566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2725fa22f6d0SBarry Smith } 2726fa22f6d0SBarry Smith xx1 = mat->xx1; 2727fa22f6d0SBarry Smith bb1 = mat->bb1; 2728fa22f6d0SBarry Smith 27299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2730fa22f6d0SBarry Smith 2731fa22f6d0SBarry Smith if (!mat->diag) { 2732effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27339566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 27349566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2735fa22f6d0SBarry Smith } 27369566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2737fa22f6d0SBarry Smith 2738fa22f6d0SBarry Smith if (hasop) { 27399566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 27409566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 274120f1ed55SBarry Smith } else { 274220f1ed55SBarry Smith /* 274320f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27449566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27459566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 274620f1ed55SBarry Smith */ 27479566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27499566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27509566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27519566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2752887ee2caSBarry Smith if (omega == 1.0) { 275326fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27549566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2755887ee2caSBarry Smith } else { 275626fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2758887ee2caSBarry Smith } 27599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 276320f1ed55SBarry Smith } 2764fa22f6d0SBarry Smith 2765fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2766629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2767629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27689566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27699566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27709566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27729566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27739566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27749566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27759566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27769566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2777fa22f6d0SBarry Smith 2778fa22f6d0SBarry Smith /* local sweep */ 27799566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27809566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2781f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2783ffe4fb16SHong Zhang } 2784ffe4fb16SHong Zhang 2785dfb205c3SBarry Smith /*@ 2786*d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2787dfb205c3SBarry Smith 2788d083f849SBarry Smith Collective 2789dfb205c3SBarry Smith 2790dfb205c3SBarry Smith Input Parameters: 2791dfb205c3SBarry Smith + comm - MPI communicator 2792dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 279311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2794dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2795*d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 27962ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27972ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27982ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2799483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2800dfb205c3SBarry Smith . j - column indices 2801dfb205c3SBarry Smith - a - matrix values 2802dfb205c3SBarry Smith 2803dfb205c3SBarry Smith Output Parameter: 2804dfb205c3SBarry Smith . mat - the matrix 2805dfb205c3SBarry Smith 2806dfb205c3SBarry Smith Level: intermediate 2807dfb205c3SBarry Smith 2808dfb205c3SBarry Smith Notes: 28092ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 28102ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 28112ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2812dfb205c3SBarry Smith 28132ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2814dfb205c3SBarry Smith 28151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2816*d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2817dfb205c3SBarry Smith @*/ 2818d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2819d71ae5a4SJacob Faibussowitsch { 2820dfb205c3SBarry Smith PetscFunctionBegin; 28215f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 28225f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 28239566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 28249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 28259566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 28269566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 28273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2828dfb205c3SBarry Smith } 2829dfb205c3SBarry Smith 2830dfb205c3SBarry Smith /*@C 283111a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2832dfb205c3SBarry Smith 2833d083f849SBarry Smith Collective 2834dfb205c3SBarry Smith 2835dfb205c3SBarry Smith Input Parameters: 28361c4f3114SJed Brown + B - the matrix 2837dfb205c3SBarry Smith . bs - the block size 2838*d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2839*d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2840*d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2841dfb205c3SBarry Smith 2842664954b6SBarry Smith Level: advanced 2843664954b6SBarry Smith 2844664954b6SBarry Smith Notes: 2845*d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2846*d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2847*d8a51d2aSBarry Smith called this routine. 2848*d8a51d2aSBarry Smith 28490cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28500cd7f59aSBarry Smith and usually the numerical values as well 28510cd7f59aSBarry Smith 2852*d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2853dfb205c3SBarry Smith 2854*d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2855*d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2856dfb205c3SBarry Smith @*/ 2857d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2858d71ae5a4SJacob Faibussowitsch { 2859dfb205c3SBarry Smith PetscFunctionBegin; 2860cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2862dfb205c3SBarry Smith } 2863dfb205c3SBarry Smith 2864d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2865d71ae5a4SJacob Faibussowitsch { 286610c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 286710c56fdeSHong Zhang PetscInt *indx; 286810c56fdeSHong Zhang PetscScalar *values; 2869dfb205c3SBarry Smith 28704dcd73b1SHong Zhang PetscFunctionBegin; 28719566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 287210c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 287310c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2874de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 287510c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2876de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28774dcd73b1SHong Zhang 28789566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28799371c9d4SSatish Balay mbs = m / bs; 28809371c9d4SSatish Balay Nbs = N / cbs; 288148a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2882da91a574SPierre Jolivet nbs = n / cbs; 28834dcd73b1SHong Zhang 28849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2885d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2886de25e9cbSPierre Jolivet 28879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2889de25e9cbSPierre Jolivet if (rank == size - 1) { 2890de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28915f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2892de25e9cbSPierre Jolivet } 2893de25e9cbSPierre Jolivet 2894d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28959566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 289610c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28979566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28984dcd73b1SHong Zhang nnz = nnz / bs; 28994dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 29009566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 29019566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 29024dcd73b1SHong Zhang } 29039566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29049566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 29054dcd73b1SHong Zhang 29069566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 29079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 29089566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 29099566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 29109566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 29119566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2912d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 29134dcd73b1SHong Zhang } 29144dcd73b1SHong Zhang 291510c56fdeSHong Zhang /* numeric phase */ 29169566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 29179566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 29184dcd73b1SHong Zhang 29199566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 29204dcd73b1SHong Zhang for (i = 0; i < m; i++) { 29219566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29224dcd73b1SHong Zhang Ii = i + rstart; 29239566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 29249566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29254dcd73b1SHong Zhang } 29269566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29279566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 29289566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 29293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29304dcd73b1SHong Zhang } 2931