xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision d9ca1df42eda25bc875149d6d493aad6e204c9ff)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
364a2ae208SSatish Balay #undef __FUNCT__
374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
387087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
39a30f8f8cSSatish Balay {
40f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
41dfbe8321SBarry Smith   PetscErrorCode ierr;
42a30f8f8cSSatish Balay 
43a30f8f8cSSatish Balay   PetscFunctionBegin;
44a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
45a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
46a30f8f8cSSatish Balay   PetscFunctionReturn(0);
47a30f8f8cSSatish Balay }
48a30f8f8cSSatish Balay 
49a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
50a30f8f8cSSatish Balay   { \
51a30f8f8cSSatish Balay  \
52a30f8f8cSSatish Balay     brow = row/bs;  \
53a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
54a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
55a30f8f8cSSatish Balay     bcol = col/bs; \
56a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
57a30f8f8cSSatish Balay     low  = 0; high = nrow; \
58a30f8f8cSSatish Balay     while (high-low > 3) { \
59a30f8f8cSSatish Balay       t = (low+high)/2; \
60a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
61a30f8f8cSSatish Balay       else              low  = t; \
62a30f8f8cSSatish Balay     } \
63a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
64a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
65a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
66a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
67a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
68a30f8f8cSSatish Balay         else                    *bap  = value;  \
69a30f8f8cSSatish Balay         goto a_noinsert; \
70a30f8f8cSSatish Balay       } \
71a30f8f8cSSatish Balay     } \
72a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
73e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
74fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
75a30f8f8cSSatish Balay     N = nrow++ - 1;  \
76a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
77a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
78a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
79a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
80a30f8f8cSSatish Balay     } \
81a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
82a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
83a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
84e56f5c9eSBarry Smith     A->nonzerostate++;\
85a30f8f8cSSatish Balay a_noinsert:; \
86a30f8f8cSSatish Balay     ailen[brow] = nrow; \
87a30f8f8cSSatish Balay   }
88e5e170daSBarry Smith 
89a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
90a30f8f8cSSatish Balay   { \
91a30f8f8cSSatish Balay     brow = row/bs;  \
92a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
93a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
94a30f8f8cSSatish Balay     bcol = col/bs; \
95a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
96a30f8f8cSSatish Balay     low  = 0; high = nrow; \
97a30f8f8cSSatish Balay     while (high-low > 3) { \
98a30f8f8cSSatish Balay       t = (low+high)/2; \
99a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
100a30f8f8cSSatish Balay       else              low  = t; \
101a30f8f8cSSatish Balay     } \
102a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
103a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
104a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
105a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
106a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
107a30f8f8cSSatish Balay         else                    *bap  = value;  \
108a30f8f8cSSatish Balay         goto b_noinsert; \
109a30f8f8cSSatish Balay       } \
110a30f8f8cSSatish Balay     } \
111a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
112e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
113fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
114a30f8f8cSSatish Balay     N = nrow++ - 1;  \
115a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
116a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
117a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
118a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
119a30f8f8cSSatish Balay     } \
120a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
121a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
122a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
123e56f5c9eSBarry Smith     B->nonzerostate++;\
124a30f8f8cSSatish Balay b_noinsert:; \
125a30f8f8cSSatish Balay     bilen[brow] = nrow; \
126a30f8f8cSSatish Balay   }
127a30f8f8cSSatish Balay 
128a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
129a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
130a30f8f8cSSatish Balay */
1314a2ae208SSatish Balay #undef __FUNCT__
132dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
133dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
134a30f8f8cSSatish Balay {
135a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
136a30f8f8cSSatish Balay   MatScalar      value;
137ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
138dfbe8321SBarry Smith   PetscErrorCode ierr;
1391302d50aSBarry Smith   PetscInt       i,j,row,col;
140d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
141d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
142d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
143a30f8f8cSSatish Balay 
144a30f8f8cSSatish Balay   /* Some Variables required in the macro */
145a30f8f8cSSatish Balay   Mat          A     = baij->A;
146a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1471302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
148a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   Mat         B     = baij->B;
151a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1521302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
153a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
154a30f8f8cSSatish Balay 
1551302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1561302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
157a30f8f8cSSatish Balay   MatScalar *ap,*bap;
158a30f8f8cSSatish Balay 
159a30f8f8cSSatish Balay   /* for stash */
1600298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1610298fd71SBarry Smith   MatScalar *v_loc = NULL;
162a30f8f8cSSatish Balay 
163a30f8f8cSSatish Balay   PetscFunctionBegin;
164a30f8f8cSSatish Balay   if (!baij->donotstash) {
16559ffdab8SBarry Smith     if (n > baij->n_loc) {
16659ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
16759ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
168785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
169785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
17026fbe8dcSKarl Rupp 
17159ffdab8SBarry Smith       baij->n_loc = n;
17259ffdab8SBarry Smith     }
17359ffdab8SBarry Smith     in_loc = baij->in_loc;
17459ffdab8SBarry Smith     v_loc  = baij->v_loc;
175a30f8f8cSSatish Balay   }
176a30f8f8cSSatish Balay 
177a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
178a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1792515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
180e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
181a30f8f8cSSatish Balay #endif
182a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
183a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
184a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18501b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
18601b2bd88SHong Zhang           if (a->ignore_ltriangular) {
18701b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
18826fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
18901b2bd88SHong Zhang         }
190a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
191a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
192a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
193a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
194db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
195db4deed7SKarl Rupp           else             value = v[i+j*m];
196a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
197a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
198a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
200cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
201a30f8f8cSSatish Balay #endif
202a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
203a30f8f8cSSatish Balay           if (mat->was_assembled) {
204a30f8f8cSSatish Balay             if (!baij->colmap) {
205ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
206a30f8f8cSSatish Balay             }
207a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
208a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
20971730473SSatish Balay             col  = col - 1;
210a30f8f8cSSatish Balay #else
21171730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
212a30f8f8cSSatish Balay #endif
213a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
214ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
215a30f8f8cSSatish Balay               col  =  in[j];
216a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
217a30f8f8cSSatish Balay               B    = baij->B;
218a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
219a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
220a30f8f8cSSatish Balay               ba   = b->a;
22171730473SSatish Balay             } else col += in[j]%bs;
222a30f8f8cSSatish Balay           } else col = in[j];
223db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
224db4deed7SKarl Rupp           else             value = v[i+j*m];
225a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
226a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
227a30f8f8cSSatish Balay         }
228a30f8f8cSSatish Balay       }
229a30f8f8cSSatish Balay     } else {  /* off processor entry */
2304cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
231a30f8f8cSSatish Balay       if (!baij->donotstash) {
2325080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
233a30f8f8cSSatish Balay         n_loc          = 0;
234a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
235f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
236a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
237a30f8f8cSSatish Balay           if (roworiented) {
238a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
239a30f8f8cSSatish Balay           } else {
240a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
241a30f8f8cSSatish Balay           }
242a30f8f8cSSatish Balay           n_loc++;
243a30f8f8cSSatish Balay         }
244b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
245a30f8f8cSSatish Balay       }
246a30f8f8cSSatish Balay     }
247a30f8f8cSSatish Balay   }
248a30f8f8cSSatish Balay   PetscFunctionReturn(0);
249a30f8f8cSSatish Balay }
250a30f8f8cSSatish Balay 
2514a2ae208SSatish Balay #undef __FUNCT__
252dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
253dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
254a30f8f8cSSatish Balay {
2550880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
256f15d580aSBarry Smith   const MatScalar *value;
257f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
258ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
259dfbe8321SBarry Smith   PetscErrorCode  ierr;
260899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
261899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
262d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2630880e062SHong Zhang 
264a30f8f8cSSatish Balay   PetscFunctionBegin;
2650880e062SHong Zhang   if (!barray) {
266785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2670880e062SHong Zhang     baij->barray = barray;
2680880e062SHong Zhang   }
2690880e062SHong Zhang 
2700880e062SHong Zhang   if (roworiented) {
2710880e062SHong Zhang     stepval = (n-1)*bs;
2720880e062SHong Zhang   } else {
2730880e062SHong Zhang     stepval = (m-1)*bs;
2740880e062SHong Zhang   }
2750880e062SHong Zhang   for (i=0; i<m; i++) {
2760880e062SHong Zhang     if (im[i] < 0) continue;
2772515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
278e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2790880e062SHong Zhang #endif
2800880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2810880e062SHong Zhang       row = im[i] - rstart;
2820880e062SHong Zhang       for (j=0; j<n; j++) {
283f3f98c53SJed Brown         if (im[i] > in[j]) {
284f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
285e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
286f3f98c53SJed Brown         }
2870880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2880880e062SHong Zhang         if ((roworiented) && (n == 1)) {
289f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2900880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
291f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2920880e062SHong Zhang         } else { /* Here a copy is required */
2930880e062SHong Zhang           if (roworiented) {
2940880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2950880e062SHong Zhang           } else {
2960880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2970880e062SHong Zhang           }
2980880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2990880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3000880e062SHong Zhang               *barray++ = *value++;
3010880e062SHong Zhang             }
3020880e062SHong Zhang           }
3030880e062SHong Zhang           barray -=bs2;
3040880e062SHong Zhang         }
3050880e062SHong Zhang 
3060880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
3070880e062SHong Zhang           col  = in[j] - cstart;
3080880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
30926fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
311cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
323e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
326e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3300880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
336ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col  = in[j];
3380880e062SHong Zhang             }
33926fbe8dcSKarl Rupp           } else col = in[j];
340e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3410880e062SHong Zhang         }
3420880e062SHong Zhang       }
3430880e062SHong Zhang     } else {
3444cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
364d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
368e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
373e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
376a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data--;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
396a30f8f8cSSatish Balay   }
397a30f8f8cSSatish Balay   PetscFunctionReturn(0);
398a30f8f8cSSatish Balay }
399a30f8f8cSSatish Balay 
4004a2ae208SSatish Balay #undef __FUNCT__
4014a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
402dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
403a30f8f8cSSatish Balay {
404a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
405dfbe8321SBarry Smith   PetscErrorCode ierr;
406a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
407a30f8f8cSSatish Balay 
408a30f8f8cSSatish Balay   PetscFunctionBegin;
409a30f8f8cSSatish Balay   if (baij->size == 1) {
410a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
411a30f8f8cSSatish Balay   } else {
412a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
413785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
414a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
415a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
416a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
418ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4198f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
420a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4210b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4220b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4230b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4240b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
425899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
426d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4270b8dc8d2SHong Zhang       MatScalar    *v;
4280b8dc8d2SHong Zhang 
429dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
430d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4310b8dc8d2SHong Zhang       /* Amat */
4320b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4330b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4340b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4350b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4360b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4370b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4380b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4390b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4400b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4410b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4420b8dc8d2SHong Zhang               /* non-diagonal block */
4430b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4440b8dc8d2SHong Zhang             }
4450b8dc8d2SHong Zhang           }
4460b8dc8d2SHong Zhang         }
4470b8dc8d2SHong Zhang       }
4480b8dc8d2SHong Zhang       /* Bmat */
4490b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4500b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4510b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4520b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4530b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4540b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4550b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4560b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4570b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4580b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4590b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4600b8dc8d2SHong Zhang             }
4610b8dc8d2SHong Zhang           }
4620b8dc8d2SHong Zhang         }
4630b8dc8d2SHong Zhang       }
464ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4650b8dc8d2SHong Zhang       *norm = 0.0;
466d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4670b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4680b8dc8d2SHong Zhang       }
46974ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
470f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
471a30f8f8cSSatish Balay   }
472a30f8f8cSSatish Balay   PetscFunctionReturn(0);
473a30f8f8cSSatish Balay }
474a30f8f8cSSatish Balay 
4754a2ae208SSatish Balay #undef __FUNCT__
4764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
477dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
478a30f8f8cSSatish Balay {
479a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
480dfbe8321SBarry Smith   PetscErrorCode ierr;
4811302d50aSBarry Smith   PetscInt       nstash,reallocs;
482a30f8f8cSSatish Balay   InsertMode     addv;
483a30f8f8cSSatish Balay 
484a30f8f8cSSatish Balay   PetscFunctionBegin;
48526fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
486a30f8f8cSSatish Balay 
487a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
488ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
489ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
490a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
491a30f8f8cSSatish Balay 
492d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4931e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
494a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4951e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
496a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4971e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
498a30f8f8cSSatish Balay   PetscFunctionReturn(0);
499a30f8f8cSSatish Balay }
500a30f8f8cSSatish Balay 
5014a2ae208SSatish Balay #undef __FUNCT__
5024a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
503dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
504a30f8f8cSSatish Balay {
505a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
506a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
5076849ba73SBarry Smith   PetscErrorCode ierr;
50813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
509e44c0bd4SBarry Smith   PetscInt       *row,*col;
510ace3abfcSBarry Smith   PetscBool      other_disassembled;
51113f74950SBarry Smith   PetscMPIInt    n;
512ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
513a30f8f8cSSatish Balay   MatScalar      *val;
514a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
515a30f8f8cSSatish Balay 
51691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
517a30f8f8cSSatish Balay   PetscFunctionBegin;
5184cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
519a30f8f8cSSatish Balay     while (1) {
520a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
521a30f8f8cSSatish Balay       if (!flg) break;
522a30f8f8cSSatish Balay 
523a30f8f8cSSatish Balay       for (i=0; i<n;) {
524a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
52526fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
52626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
52726fbe8dcSKarl Rupp         }
528a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
529a30f8f8cSSatish Balay         else       ncols = n-i;
530a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
531dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
532a30f8f8cSSatish Balay         i    = j;
533a30f8f8cSSatish Balay       }
534a30f8f8cSSatish Balay     }
535a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
536a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
537a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
538a30f8f8cSSatish Balay        restore the original flags */
539a30f8f8cSSatish Balay     r1 = baij->roworiented;
540a30f8f8cSSatish Balay     r2 = a->roworiented;
54191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
54226fbe8dcSKarl Rupp 
543a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
544a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
54526fbe8dcSKarl Rupp 
54691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
547a30f8f8cSSatish Balay     while (1) {
548a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
549a30f8f8cSSatish Balay       if (!flg) break;
550a30f8f8cSSatish Balay 
551a30f8f8cSSatish Balay       for (i=0; i<n;) {
552a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
55326fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
55426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
55526fbe8dcSKarl Rupp         }
556a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
557a30f8f8cSSatish Balay         else       ncols = n-i;
558dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
559a30f8f8cSSatish Balay         i    = j;
560a30f8f8cSSatish Balay       }
561a30f8f8cSSatish Balay     }
562a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
56326fbe8dcSKarl Rupp 
564a30f8f8cSSatish Balay     baij->roworiented = r1;
565a30f8f8cSSatish Balay     a->roworiented    = r2;
56626fbe8dcSKarl Rupp 
56791c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
568a30f8f8cSSatish Balay   }
569a30f8f8cSSatish Balay 
570a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
571a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
574a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
575a30f8f8cSSatish Balay   /*
576a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
577a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
578a30f8f8cSSatish Balay   */
579a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
580ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
581a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
582ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     }
584a30f8f8cSSatish Balay   }
585a30f8f8cSSatish Balay 
586a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58740781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
588a30f8f8cSSatish Balay   }
589a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
590a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
591a30f8f8cSSatish Balay 
59274ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
59326fbe8dcSKarl Rupp 
594a30f8f8cSSatish Balay   baij->rowvalues = 0;
5954f9cfa9eSBarry Smith 
5964f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
5974f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
598e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
59909e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
600e56f5c9eSBarry Smith   }
601a30f8f8cSSatish Balay   PetscFunctionReturn(0);
602a30f8f8cSSatish Balay }
603a30f8f8cSSatish Balay 
6047da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6069804daf3SBarry Smith #include <petscdraw.h>
6074a2ae208SSatish Balay #undef __FUNCT__
6084a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6096849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
610a30f8f8cSSatish Balay {
611a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
612dfbe8321SBarry Smith   PetscErrorCode    ierr;
613d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
6147da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
615ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
616b0a32e0cSBarry Smith   PetscViewer       sviewer;
617f3ef73ceSBarry Smith   PetscViewerFormat format;
618a30f8f8cSSatish Balay 
619a30f8f8cSSatish Balay   PetscFunctionBegin;
620251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
621251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
62232077d6dSBarry Smith   if (iascii) {
623b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
624456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
625a30f8f8cSSatish Balay       MatInfo info;
626ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
627a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6287b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6297b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
631e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
633e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
634b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6357b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63607d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
637a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
638a30f8f8cSSatish Balay       PetscFunctionReturn(0);
639fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
64077431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
641a30f8f8cSSatish Balay       PetscFunctionReturn(0);
642c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
643c1490034SHong Zhang       PetscFunctionReturn(0);
644a30f8f8cSSatish Balay     }
645a30f8f8cSSatish Balay   }
646a30f8f8cSSatish Balay 
647a30f8f8cSSatish Balay   if (isdraw) {
648b0a32e0cSBarry Smith     PetscDraw draw;
649ace3abfcSBarry Smith     PetscBool isnull;
650b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
651b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
652a30f8f8cSSatish Balay   }
653a30f8f8cSSatish Balay 
6547da1fb6eSBarry Smith   {
655a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
656a30f8f8cSSatish Balay     Mat          A;
65765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
659d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
660a30f8f8cSSatish Balay     MatScalar    *a;
6613e219373SBarry Smith     const char   *matname;
662a30f8f8cSSatish Balay 
663f204ca49SKris Buschelman     /* Should this be the same type as mat? */
664ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
665a30f8f8cSSatish Balay     if (!rank) {
666f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
667a30f8f8cSSatish Balay     } else {
668f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
669a30f8f8cSSatish Balay     }
670f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6710298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6722b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6733bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay     /* copy over the A part */
67665d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
677a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
678785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
679a30f8f8cSSatish Balay 
680a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
681e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
68226fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
683a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
684e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
685a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
686dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
68726fbe8dcSKarl Rupp           col++;
68826fbe8dcSKarl Rupp           a += bs;
689a30f8f8cSSatish Balay         }
690a30f8f8cSSatish Balay       }
691a30f8f8cSSatish Balay     }
692a30f8f8cSSatish Balay     /* copy over the B part */
69365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69465d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
695a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
696e9f7bc9eSHong Zhang 
697e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
69826fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
699a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
700a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
701a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
702799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
70326fbe8dcSKarl Rupp           col++;
70426fbe8dcSKarl Rupp           a += bs;
705a30f8f8cSSatish Balay         }
706a30f8f8cSSatish Balay       }
707a30f8f8cSSatish Balay     }
708a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
709a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
710a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
711a30f8f8cSSatish Balay     /*
712a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
713b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
714a30f8f8cSSatish Balay     */
715b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
716ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
7173e219373SBarry Smith     if (!rank) {
718ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
7197da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     }
721b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7226bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
723a30f8f8cSSatish Balay   }
724a30f8f8cSSatish Balay   PetscFunctionReturn(0);
725a30f8f8cSSatish Balay }
726a30f8f8cSSatish Balay 
7274a2ae208SSatish Balay #undef __FUNCT__
7284a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
729dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
730a30f8f8cSSatish Balay {
731dfbe8321SBarry Smith   PetscErrorCode ierr;
732ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
733a30f8f8cSSatish Balay 
734a30f8f8cSSatish Balay   PetscFunctionBegin;
735251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
736251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
737251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
738251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73932077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
740a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
741a30f8f8cSSatish Balay   }
742a30f8f8cSSatish Balay   PetscFunctionReturn(0);
743a30f8f8cSSatish Balay }
744a30f8f8cSSatish Balay 
7454a2ae208SSatish Balay #undef __FUNCT__
7464a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
747dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
748a30f8f8cSSatish Balay {
749a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
750dfbe8321SBarry Smith   PetscErrorCode ierr;
751a30f8f8cSSatish Balay 
752a30f8f8cSSatish Balay   PetscFunctionBegin;
753a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
754d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
755a30f8f8cSSatish Balay #endif
756a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7586bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7596bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
760a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7616bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #else
76305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
764a30f8f8cSSatish Balay #endif
76505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7676bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7745755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77605b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7776bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7786bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7796bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
780ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78105b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
782a30f8f8cSSatish Balay #endif
78359ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78459ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
785899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
786bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
787901853e0SKris Buschelman 
788dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
789bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
790bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
791bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
792bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
793bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
794a30f8f8cSSatish Balay   PetscFunctionReturn(0);
795a30f8f8cSSatish Balay }
796a30f8f8cSSatish Balay 
7974a2ae208SSatish Balay #undef __FUNCT__
798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
800547795f9SHong Zhang {
801547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
802547795f9SHong Zhang   PetscErrorCode ierr;
803547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
804547795f9SHong Zhang   PetscScalar    *x,*from;
805547795f9SHong Zhang 
806547795f9SHong Zhang   PetscFunctionBegin;
807547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
808e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
809547795f9SHong Zhang 
810547795f9SHong Zhang   /* diagonal part */
811547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813547795f9SHong Zhang 
814547795f9SHong Zhang   /* subdiagonal part */
815547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* copy x into the vec slvec0 */
818547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
819547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820547795f9SHong Zhang 
821547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824547795f9SHong Zhang 
825547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827547795f9SHong Zhang   /* supperdiagonal part */
828547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829547795f9SHong Zhang   PetscFunctionReturn(0);
830547795f9SHong Zhang }
831547795f9SHong Zhang 
832547795f9SHong Zhang #undef __FUNCT__
833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
835a9d4b620SHong Zhang {
836a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode    ierr;
838d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
839*d9ca1df4SBarry Smith   PetscScalar       *from;
840*d9ca1df4SBarry Smith   const PetscScalar *x;
841a9d4b620SHong Zhang 
842a9d4b620SHong Zhang   PetscFunctionBegin;
843a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
844e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
845a9d4b620SHong Zhang 
846a9d4b620SHong Zhang   /* diagonal part */
847a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
848fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
849a9d4b620SHong Zhang 
850a9d4b620SHong Zhang   /* subdiagonal part */
851a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
852fc165ae2SBarry Smith 
853a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8541ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
855*d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
856a9d4b620SHong Zhang 
857fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
858fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
859*d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
860fc165ae2SBarry Smith 
861fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
862ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
863a9d4b620SHong Zhang   /* supperdiagonal part */
864a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
865a9d4b620SHong Zhang   PetscFunctionReturn(0);
866a9d4b620SHong Zhang }
867a9d4b620SHong Zhang 
868a9d4b620SHong Zhang #undef __FUNCT__
86940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
870dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
871a30f8f8cSSatish Balay {
872a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
873dfbe8321SBarry Smith   PetscErrorCode ierr;
8741302d50aSBarry Smith   PetscInt       nt;
875a30f8f8cSSatish Balay 
876a30f8f8cSSatish Balay   PetscFunctionBegin;
877a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
878e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
879e7e72b3dSBarry Smith 
880a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
881e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88265d70643SHong Zhang 
883ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
884b941877fSHong Zhang   /* do diagonal part */
885b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
886b941877fSHong Zhang   /* do supperdiagonal part */
887ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
888b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
889b941877fSHong Zhang   /* do subdiagonal part */
890b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
891ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
892ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
893a30f8f8cSSatish Balay   PetscFunctionReturn(0);
894a30f8f8cSSatish Balay }
895a30f8f8cSSatish Balay 
8964a2ae208SSatish Balay #undef __FUNCT__
8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
899a30f8f8cSSatish Balay {
900de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
901dfbe8321SBarry Smith   PetscErrorCode    ierr;
902d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
903*d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
904*d9ca1df4SBarry Smith   const PetscScalar *x;
905a9d4b620SHong Zhang 
906a9d4b620SHong Zhang   PetscFunctionBegin;
907a9d4b620SHong Zhang   /*
908ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
9090ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
910a9d4b620SHong Zhang   */
911a9d4b620SHong Zhang   /* diagonal part */
912a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9132dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
914a9d4b620SHong Zhang 
915a9d4b620SHong Zhang   /* subdiagonal part */
916a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
917a9d4b620SHong Zhang 
918a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9191ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
920*d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
921a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9221ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
923a9d4b620SHong Zhang 
924ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
925*d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
926ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
927a9d4b620SHong Zhang 
928a9d4b620SHong Zhang   /* supperdiagonal part */
929a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
930a9d4b620SHong Zhang   PetscFunctionReturn(0);
931a9d4b620SHong Zhang }
932a9d4b620SHong Zhang 
933a9d4b620SHong Zhang #undef __FUNCT__
934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
936a9d4b620SHong Zhang {
937a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
938dfbe8321SBarry Smith   PetscErrorCode ierr;
939a30f8f8cSSatish Balay 
940a30f8f8cSSatish Balay   PetscFunctionBegin;
941ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
942b941877fSHong Zhang   /* do diagonal part */
943b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
944b941877fSHong Zhang   /* do supperdiagonal part */
945ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
946de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
947de8b6608SHong Zhang 
948b941877fSHong Zhang   /* do subdiagonal part */
949a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
950ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
951ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
952a30f8f8cSSatish Balay   PetscFunctionReturn(0);
953a30f8f8cSSatish Balay }
954a30f8f8cSSatish Balay 
955a30f8f8cSSatish Balay /*
956a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
957a30f8f8cSSatish Balay    diagonal block
958a30f8f8cSSatish Balay */
9594a2ae208SSatish Balay #undef __FUNCT__
9604a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
961dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
962a30f8f8cSSatish Balay {
963a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
964dfbe8321SBarry Smith   PetscErrorCode ierr;
965a30f8f8cSSatish Balay 
966a30f8f8cSSatish Balay   PetscFunctionBegin;
967e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
968a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
969a30f8f8cSSatish Balay   PetscFunctionReturn(0);
970a30f8f8cSSatish Balay }
971a30f8f8cSSatish Balay 
9724a2ae208SSatish Balay #undef __FUNCT__
9734a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
974f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
975a30f8f8cSSatish Balay {
976a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
977dfbe8321SBarry Smith   PetscErrorCode ierr;
978a30f8f8cSSatish Balay 
979a30f8f8cSSatish Balay   PetscFunctionBegin;
980f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
981f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
982a30f8f8cSSatish Balay   PetscFunctionReturn(0);
983a30f8f8cSSatish Balay }
984a30f8f8cSSatish Balay 
9854a2ae208SSatish Balay #undef __FUNCT__
9864a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9871302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
988a30f8f8cSSatish Balay {
989d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
990d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
991d0d4cfc2SHong Zhang   PetscErrorCode ierr;
992d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
993d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
994899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
995d0d4cfc2SHong Zhang 
996a30f8f8cSSatish Balay   PetscFunctionBegin;
997e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
998d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
999d0d4cfc2SHong Zhang 
1000d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1001d0d4cfc2SHong Zhang     /*
1002d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1003d0d4cfc2SHong Zhang     */
1004d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1005d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1006d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1007d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1008d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
100926fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1010d0d4cfc2SHong Zhang     }
1011dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1012d0d4cfc2SHong Zhang   }
1013d0d4cfc2SHong Zhang 
1014e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1015d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1016d0d4cfc2SHong Zhang 
1017d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1018d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1019d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1020d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1021d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1022d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1023d0d4cfc2SHong Zhang 
1024d0d4cfc2SHong Zhang   cmap = mat->garray;
1025d0d4cfc2SHong Zhang   if (v  || idx) {
1026d0d4cfc2SHong Zhang     if (nztot) {
1027d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1028d0d4cfc2SHong Zhang       PetscInt imark = -1;
1029d0d4cfc2SHong Zhang       if (v) {
1030d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1031d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1032d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1033d0d4cfc2SHong Zhang           else break;
1034d0d4cfc2SHong Zhang         }
1035d0d4cfc2SHong Zhang         imark = i;
1036d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1037d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1038d0d4cfc2SHong Zhang       }
1039d0d4cfc2SHong Zhang       if (idx) {
1040d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1041d0d4cfc2SHong Zhang         if (imark > -1) {
1042d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1043d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1044d0d4cfc2SHong Zhang           }
1045d0d4cfc2SHong Zhang         } else {
1046d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
104726fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1048d0d4cfc2SHong Zhang             else break;
1049d0d4cfc2SHong Zhang           }
1050d0d4cfc2SHong Zhang           imark = i;
1051d0d4cfc2SHong Zhang         }
1052d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1053d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1054d0d4cfc2SHong Zhang       }
1055d0d4cfc2SHong Zhang     } else {
1056d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1057d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1058d0d4cfc2SHong Zhang     }
1059d0d4cfc2SHong Zhang   }
1060d0d4cfc2SHong Zhang   *nz  = nztot;
1061d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1062d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1063a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1064a30f8f8cSSatish Balay }
1065a30f8f8cSSatish Balay 
10664a2ae208SSatish Balay #undef __FUNCT__
10674a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10681302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1069a30f8f8cSSatish Balay {
1070a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1071a30f8f8cSSatish Balay 
1072a30f8f8cSSatish Balay   PetscFunctionBegin;
1073e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1074a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1075a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1076a30f8f8cSSatish Balay }
1077a30f8f8cSSatish Balay 
10784a2ae208SSatish Balay #undef __FUNCT__
1079d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1080d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1081d0d4cfc2SHong Zhang {
1082d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1083d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1084d0d4cfc2SHong Zhang 
1085d0d4cfc2SHong Zhang   PetscFunctionBegin;
1086d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1087d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1088d0d4cfc2SHong Zhang }
1089d0d4cfc2SHong Zhang #undef __FUNCT__
1090d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1091d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1092d0d4cfc2SHong Zhang {
1093d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1094d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1095d0d4cfc2SHong Zhang 
1096d0d4cfc2SHong Zhang   PetscFunctionBegin;
1097d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1098d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1099d0d4cfc2SHong Zhang }
1100d0d4cfc2SHong Zhang 
1101d0d4cfc2SHong Zhang #undef __FUNCT__
110299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110499cafbc1SBarry Smith {
110599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110699cafbc1SBarry Smith   PetscErrorCode ierr;
110799cafbc1SBarry Smith 
110899cafbc1SBarry Smith   PetscFunctionBegin;
110999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111199cafbc1SBarry Smith   PetscFunctionReturn(0);
111299cafbc1SBarry Smith }
111399cafbc1SBarry Smith 
111499cafbc1SBarry Smith #undef __FUNCT__
111599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111799cafbc1SBarry Smith {
111899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111999cafbc1SBarry Smith   PetscErrorCode ierr;
112099cafbc1SBarry Smith 
112199cafbc1SBarry Smith   PetscFunctionBegin;
112299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112499cafbc1SBarry Smith   PetscFunctionReturn(0);
112599cafbc1SBarry Smith }
112699cafbc1SBarry Smith 
112799cafbc1SBarry Smith #undef __FUNCT__
11284a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1129dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1130a30f8f8cSSatish Balay {
1131a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1132dfbe8321SBarry Smith   PetscErrorCode ierr;
1133a30f8f8cSSatish Balay 
1134a30f8f8cSSatish Balay   PetscFunctionBegin;
1135a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1136a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1138a30f8f8cSSatish Balay }
1139a30f8f8cSSatish Balay 
11404a2ae208SSatish Balay #undef __FUNCT__
11414a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1142dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1143a30f8f8cSSatish Balay {
1144a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1145a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1146dfbe8321SBarry Smith   PetscErrorCode ierr;
1147a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1148a30f8f8cSSatish Balay 
1149a30f8f8cSSatish Balay   PetscFunctionBegin;
1150d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
115126fbe8dcSKarl Rupp 
1152a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
115326fbe8dcSKarl Rupp 
1154a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1155a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
115626fbe8dcSKarl Rupp 
1157a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
115826fbe8dcSKarl Rupp 
1159a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1160a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1161a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1162a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1163a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1164a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1165a30f8f8cSSatish Balay     info->memory       = isend[3];
1166a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1167a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1168ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
116926fbe8dcSKarl Rupp 
1170a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1171a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1172a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1173a30f8f8cSSatish Balay     info->memory       = irecv[3];
1174a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1175a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1176ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
117726fbe8dcSKarl Rupp 
1178a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1179a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1180a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1181a30f8f8cSSatish Balay     info->memory       = irecv[3];
1182a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1183f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1184a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1185a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1186a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1187a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1188a30f8f8cSSatish Balay }
1189a30f8f8cSSatish Balay 
11904a2ae208SSatish Balay #undef __FUNCT__
11914a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1192ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1193a30f8f8cSSatish Balay {
1194a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1195d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1196dfbe8321SBarry Smith   PetscErrorCode ierr;
1197a30f8f8cSSatish Balay 
1198a30f8f8cSSatish Balay   PetscFunctionBegin;
1199e98b92d7SKris Buschelman   switch (op) {
1200512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1201e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1203a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1204e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12054e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12064e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1207e98b92d7SKris Buschelman     break;
1208e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12094e0d8c25SBarry Smith     a->roworiented = flg;
121026fbe8dcSKarl Rupp 
12114e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12124e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1213e98b92d7SKris Buschelman     break;
12144e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1215290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1216e98b92d7SKris Buschelman     break;
1217e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12184e0d8c25SBarry Smith     a->donotstash = flg;
1219e98b92d7SKris Buschelman     break;
1220e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12214e0d8c25SBarry Smith     a->ht_flag = flg;
1222e98b92d7SKris Buschelman     break;
12239a4540c5SBarry Smith   case MAT_HERMITIAN:
1224e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1225eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
122626fbe8dcSKarl Rupp 
1227547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1228eeffb40dSHong Zhang     break;
1229ffa07934SHong Zhang   case MAT_SPD:
1230ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1231ffa07934SHong Zhang     A->spd     = flg;
1232ffa07934SHong Zhang     if (flg) {
1233ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1234ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1235ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1236ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1237ffa07934SHong Zhang     }
1238ffa07934SHong Zhang     break;
123977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1240eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1241eeffb40dSHong Zhang     break;
124277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1243eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1244eeffb40dSHong Zhang     break;
12459a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1246e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1247290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124877e54ba9SKris Buschelman     break;
1249d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12504e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1251d0d4cfc2SHong Zhang     break;
1252d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12534e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1254d0d4cfc2SHong Zhang     break;
1255d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12564e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1257d0d4cfc2SHong Zhang     break;
1258e98b92d7SKris Buschelman   default:
1259e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1260a30f8f8cSSatish Balay   }
1261a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1262a30f8f8cSSatish Balay }
1263a30f8f8cSSatish Balay 
12644a2ae208SSatish Balay #undef __FUNCT__
12658115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1266fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1267a30f8f8cSSatish Balay {
1268dfbe8321SBarry Smith   PetscErrorCode ierr;
12696e111a19SKarl Rupp 
1270a30f8f8cSSatish Balay   PetscFunctionBegin;
1271815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1272999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1273fc4dec0aSBarry Smith   }
12748115998fSBarry Smith   PetscFunctionReturn(0);
1275a30f8f8cSSatish Balay }
1276a30f8f8cSSatish Balay 
12774a2ae208SSatish Balay #undef __FUNCT__
12784a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1279dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1280a30f8f8cSSatish Balay {
1281a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1282a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1283dfbe8321SBarry Smith   PetscErrorCode ierr;
12845e90f9d9SHong Zhang   PetscInt       nv,m,n;
1285ace3abfcSBarry Smith   PetscBool      flg;
1286a30f8f8cSSatish Balay 
1287a30f8f8cSSatish Balay   PetscFunctionBegin;
1288a30f8f8cSSatish Balay   if (ll != rr) {
1289b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1290e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1291a30f8f8cSSatish Balay   }
1292b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1293b3bf805bSHong Zhang 
12945e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1295e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1296b3bf805bSHong Zhang 
12975e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1298e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12995e90f9d9SHong Zhang 
1300ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13015e90f9d9SHong Zhang 
13025e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
13030298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
13045e90f9d9SHong Zhang 
13055e90f9d9SHong Zhang   /* scale the diagonal part */
1306a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1307a30f8f8cSSatish Balay 
13085e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1309ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13100298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1311a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1312a30f8f8cSSatish Balay }
1313a30f8f8cSSatish Balay 
13144a2ae208SSatish Balay #undef __FUNCT__
13154a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1316dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1317a30f8f8cSSatish Balay {
1318f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1319dfbe8321SBarry Smith   PetscErrorCode ierr;
1320a30f8f8cSSatish Balay 
1321a30f8f8cSSatish Balay   PetscFunctionBegin;
1322a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1323a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1324a30f8f8cSSatish Balay }
1325a30f8f8cSSatish Balay 
13266849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1327a30f8f8cSSatish Balay 
13284a2ae208SSatish Balay #undef __FUNCT__
13294a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1330ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1331a30f8f8cSSatish Balay {
1332a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1333a30f8f8cSSatish Balay   Mat            a,b,c,d;
1334ace3abfcSBarry Smith   PetscBool      flg;
1335dfbe8321SBarry Smith   PetscErrorCode ierr;
1336a30f8f8cSSatish Balay 
1337a30f8f8cSSatish Balay   PetscFunctionBegin;
1338a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1339a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1340a30f8f8cSSatish Balay 
1341a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1342abc0a331SBarry Smith   if (flg) {
1343a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1344a30f8f8cSSatish Balay   }
1345ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1346a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1347a30f8f8cSSatish Balay }
1348a30f8f8cSSatish Balay 
13494a2ae208SSatish Balay #undef __FUNCT__
13503c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13513c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13523c896bc6SHong Zhang {
13533c896bc6SHong Zhang   PetscErrorCode ierr;
13543c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
13553c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
13563c896bc6SHong Zhang 
13573c896bc6SHong Zhang   PetscFunctionBegin;
13583c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13593c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1360d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13613c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1362d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13633c896bc6SHong Zhang   } else {
13643c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13653c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13663c896bc6SHong Zhang   }
13673c896bc6SHong Zhang   PetscFunctionReturn(0);
13683c896bc6SHong Zhang }
13693c896bc6SHong Zhang 
13703c896bc6SHong Zhang #undef __FUNCT__
13714994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13724994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1373273d9f13SBarry Smith {
1374dfbe8321SBarry Smith   PetscErrorCode ierr;
1375273d9f13SBarry Smith 
1376273d9f13SBarry Smith   PetscFunctionBegin;
1377535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1378273d9f13SBarry Smith   PetscFunctionReturn(0);
1379273d9f13SBarry Smith }
1380a5e6ed63SBarry Smith 
13814fe895cdSHong Zhang #undef __FUNCT__
13824fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13834fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13844fe895cdSHong Zhang {
13854fe895cdSHong Zhang   PetscErrorCode ierr;
13864fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
13874fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13884fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13894fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13904fe895cdSHong Zhang 
13914fe895cdSHong Zhang   PetscFunctionBegin;
13924fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13934fe895cdSHong Zhang     PetscScalar alpha = a;
13944fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
13954fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1396c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
13978b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
13984fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
13994fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1400c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
14018b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1402a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1403ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1404ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1405ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1406ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
14074fe895cdSHong Zhang   } else {
14084de5dceeSHong Zhang     Mat      B;
14094de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
14104de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1411d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14124de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
14134de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
14144de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
14154de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
14164de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
14174de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
14184de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
14194de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
14204de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
14214de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
14224de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
14234de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
14244de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
14254de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
14264de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1427d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14284de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
14294fe895cdSHong Zhang   }
14304fe895cdSHong Zhang   PetscFunctionReturn(0);
14314fe895cdSHong Zhang }
14324fe895cdSHong Zhang 
1433a5e6ed63SBarry Smith #undef __FUNCT__
1434a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14351302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1436a5e6ed63SBarry Smith {
14376849ba73SBarry Smith   PetscErrorCode ierr;
14381302d50aSBarry Smith   PetscInt       i;
1439ace3abfcSBarry Smith   PetscBool      flg;
1440a5e6ed63SBarry Smith 
14416849ba73SBarry Smith   PetscFunctionBegin;
14424dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1443a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1444a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
14454dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
14464dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1447a5e6ed63SBarry Smith     }
14484dcd73b1SHong Zhang   }
1449a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1450a5e6ed63SBarry Smith }
1451a5e6ed63SBarry Smith 
1452a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
14533964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1454a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1455a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1456a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
145797304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1458431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1459431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1460a30f8f8cSSatish Balay                                        0,
1461a30f8f8cSSatish Balay                                        0,
1462a30f8f8cSSatish Balay                                        0,
146397304618SKris Buschelman                                /* 10*/ 0,
1464a30f8f8cSSatish Balay                                        0,
1465a30f8f8cSSatish Balay                                        0,
146641f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1467a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
146897304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1469a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1470a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1471a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1472a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
147397304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1474a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1475a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1476a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1477d519adbfSMatthew Knepley                                /* 24*/ 0,
1478a30f8f8cSSatish Balay                                        0,
1479a30f8f8cSSatish Balay                                        0,
1480a30f8f8cSSatish Balay                                        0,
1481a30f8f8cSSatish Balay                                        0,
14824994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1483b5df2d14SHong Zhang                                        0,
1484a30f8f8cSSatish Balay                                        0,
1485a30f8f8cSSatish Balay                                        0,
1486a30f8f8cSSatish Balay                                        0,
1487d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1488a30f8f8cSSatish Balay                                        0,
1489a30f8f8cSSatish Balay                                        0,
1490a30f8f8cSSatish Balay                                        0,
1491a30f8f8cSSatish Balay                                        0,
1492d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1493a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1494d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1495a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
14963c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1497d519adbfSMatthew Knepley                                /* 44*/ 0,
1498a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1499a30f8f8cSSatish Balay                                        0,
1500a30f8f8cSSatish Balay                                        0,
1501a30f8f8cSSatish Balay                                        0,
1502f73d5cc4SBarry Smith                                /* 49*/ 0,
1503a30f8f8cSSatish Balay                                        0,
1504a30f8f8cSSatish Balay                                        0,
1505a30f8f8cSSatish Balay                                        0,
1506a30f8f8cSSatish Balay                                        0,
1507d519adbfSMatthew Knepley                                /* 54*/ 0,
1508a30f8f8cSSatish Balay                                        0,
1509a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1510a30f8f8cSSatish Balay                                        0,
1511a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
1512d519adbfSMatthew Knepley                                /* 59*/ 0,
1513a30f8f8cSSatish Balay                                        0,
1514a30f8f8cSSatish Balay                                        0,
1515357abbc8SBarry Smith                                        0,
151624d5174aSHong Zhang                                        0,
1517d519adbfSMatthew Knepley                                /* 64*/ 0,
151824d5174aSHong Zhang                                        0,
151924d5174aSHong Zhang                                        0,
152024d5174aSHong Zhang                                        0,
152124d5174aSHong Zhang                                        0,
1522d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
152324d5174aSHong Zhang                                        0,
152497304618SKris Buschelman                                        0,
152597304618SKris Buschelman                                        0,
152697304618SKris Buschelman                                        0,
1527d519adbfSMatthew Knepley                                /* 74*/ 0,
152897304618SKris Buschelman                                        0,
152997304618SKris Buschelman                                        0,
153097304618SKris Buschelman                                        0,
153197304618SKris Buschelman                                        0,
1532d519adbfSMatthew Knepley                                /* 79*/ 0,
153397304618SKris Buschelman                                        0,
153497304618SKris Buschelman                                        0,
153597304618SKris Buschelman                                        0,
15365bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1537d519adbfSMatthew Knepley                                /* 84*/ 0,
1538865e5f61SKris Buschelman                                        0,
1539865e5f61SKris Buschelman                                        0,
1540865e5f61SKris Buschelman                                        0,
1541865e5f61SKris Buschelman                                        0,
1542d519adbfSMatthew Knepley                                /* 89*/ 0,
1543865e5f61SKris Buschelman                                        0,
1544865e5f61SKris Buschelman                                        0,
1545865e5f61SKris Buschelman                                        0,
1546865e5f61SKris Buschelman                                        0,
1547d519adbfSMatthew Knepley                                /* 94*/ 0,
1548865e5f61SKris Buschelman                                        0,
1549865e5f61SKris Buschelman                                        0,
155099cafbc1SBarry Smith                                        0,
155199cafbc1SBarry Smith                                        0,
1552d519adbfSMatthew Knepley                                /* 99*/ 0,
155399cafbc1SBarry Smith                                        0,
155499cafbc1SBarry Smith                                        0,
155599cafbc1SBarry Smith                                        0,
155699cafbc1SBarry Smith                                        0,
1557d519adbfSMatthew Knepley                                /*104*/ 0,
155899cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1559d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1560d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
156195936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
156295936485SShri Abhyankar                                /*109*/ 0,
156395936485SShri Abhyankar                                        0,
156495936485SShri Abhyankar                                        0,
156595936485SShri Abhyankar                                        0,
156695936485SShri Abhyankar                                        0,
156795936485SShri Abhyankar                                /*114*/ 0,
156895936485SShri Abhyankar                                        0,
156995936485SShri Abhyankar                                        0,
157095936485SShri Abhyankar                                        0,
157195936485SShri Abhyankar                                        0,
157295936485SShri Abhyankar                                /*119*/ 0,
157395936485SShri Abhyankar                                        0,
157495936485SShri Abhyankar                                        0,
15753964eb88SJed Brown                                        0,
15763964eb88SJed Brown                                        0,
15773964eb88SJed Brown                                /*124*/ 0,
15783964eb88SJed Brown                                        0,
15793964eb88SJed Brown                                        0,
15803964eb88SJed Brown                                        0,
15813964eb88SJed Brown                                        0,
15823964eb88SJed Brown                                /*129*/ 0,
15833964eb88SJed Brown                                        0,
15843964eb88SJed Brown                                        0,
15853964eb88SJed Brown                                        0,
15863964eb88SJed Brown                                        0,
15873964eb88SJed Brown                                /*134*/ 0,
15883964eb88SJed Brown                                        0,
15893964eb88SJed Brown                                        0,
15903964eb88SJed Brown                                        0,
15913964eb88SJed Brown                                        0,
15923964eb88SJed Brown                                /*139*/ 0,
1593f9426fe0SMark Adams                                        0,
159459f5e6ceSHong Zhang                                        0,
159559f5e6ceSHong Zhang                                        0,
159659f5e6ceSHong Zhang                                        0,
159759f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
159899cafbc1SBarry Smith };
1599a30f8f8cSSatish Balay 
16004a2ae208SSatish Balay #undef __FUNCT__
16014a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
160211bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1603a30f8f8cSSatish Balay {
1604a30f8f8cSSatish Balay   PetscFunctionBegin;
1605a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1606a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1607a30f8f8cSSatish Balay }
1608a30f8f8cSSatish Balay 
16094a2ae208SSatish Balay #undef __FUNCT__
1610a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1611b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1612a23d5eceSKris Buschelman {
1613a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1614dfbe8321SBarry Smith   PetscErrorCode ierr;
1615535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1616a23d5eceSKris Buschelman 
1617a23d5eceSKris Buschelman   PetscFunctionBegin;
161833d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
161926283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
162026283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1621e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1622899cda47SBarry Smith 
1623a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1624d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1625d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1626c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1627a23d5eceSKris Buschelman 
1628d0f46423SBarry Smith   B->rmap->bs = bs;
1629a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1630a23d5eceSKris Buschelman   b->mbs      = mbs;
1631a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1632de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1633de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1634a23d5eceSKris Buschelman 
1635a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1636d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1637a23d5eceSKris Buschelman   }
1638d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1639d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1640a23d5eceSKris Buschelman 
1641d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1642d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1643a23d5eceSKris Buschelman 
1644526dfc15SBarry Smith   if (!B->preallocated) {
1645f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1646d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16479c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
16483bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1649f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1650d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16514aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
16523bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1653ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1654526dfc15SBarry Smith   }
1655a23d5eceSKris Buschelman 
1656526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1657526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
165826fbe8dcSKarl Rupp 
1659526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1660a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1661a23d5eceSKris Buschelman }
1662a23d5eceSKris Buschelman 
1663dfb205c3SBarry Smith #undef __FUNCT__
1664dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1665dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1666dfb205c3SBarry Smith {
1667dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1668dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1669dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1670dfb205c3SBarry Smith   PetscScalar    *values=0;
1671dfb205c3SBarry Smith   PetscErrorCode ierr;
1672dfb205c3SBarry Smith 
1673dfb205c3SBarry Smith   PetscFunctionBegin;
1674ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1675dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1676dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1677dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1678dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1679e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1680dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1681dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1682dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1683dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1684dfb205c3SBarry Smith 
1685dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1686dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1687dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1688dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1689dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1690dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1691dfb205c3SBarry Smith     JJ     = jj + ii[i];
1692dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1693dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1694dfb205c3SBarry Smith       JJ++;
1695dfb205c3SBarry Smith     }
1696dfb205c3SBarry Smith     d = 0;
1697dfb205c3SBarry Smith     for (; j<nz; j++) {
1698dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1699dfb205c3SBarry Smith       d++;
1700dfb205c3SBarry Smith     }
1701dfb205c3SBarry Smith     d_nnz[i] = d;
1702dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1703dfb205c3SBarry Smith   }
1704dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1705dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1706dfb205c3SBarry Smith 
1707dfb205c3SBarry Smith   values = (PetscScalar*)V;
1708dfb205c3SBarry Smith   if (!values) {
1709785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1710dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1711dfb205c3SBarry Smith   }
1712dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1713dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1714dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1715dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1716dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1717dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1718dfb205c3SBarry Smith   }
1719dfb205c3SBarry Smith 
1720dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1721dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1722dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17237827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1724dfb205c3SBarry Smith   PetscFunctionReturn(0);
1725dfb205c3SBarry Smith }
1726dfb205c3SBarry Smith 
17270bad9183SKris Buschelman /*MC
1728fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1729828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1730828413b8SBarry Smith    the matrix is stored.
1731828413b8SBarry Smith 
1732828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1733828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17340bad9183SKris Buschelman 
17350bad9183SKris Buschelman    Options Database Keys:
17360bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17370bad9183SKris Buschelman 
17380bad9183SKris Buschelman   Level: beginner
17390bad9183SKris Buschelman 
17400bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17410bad9183SKris Buschelman M*/
17420bad9183SKris Buschelman 
17438cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1744aa5a9175SDahai Guo 
1745a23d5eceSKris Buschelman #undef __FUNCT__
17464a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17478cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1748b5df2d14SHong Zhang {
1749b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1750dfbe8321SBarry Smith   PetscErrorCode ierr;
175194ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
1752b5df2d14SHong Zhang 
1753b5df2d14SHong Zhang   PetscFunctionBegin;
1754b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1755b0a32e0cSBarry Smith   B->data = (void*)b;
1756b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1757b5df2d14SHong Zhang 
1758b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1759b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1760b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1761b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
176226fbe8dcSKarl Rupp 
1763ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1764ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1765b5df2d14SHong Zhang 
1766b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1767854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
1768b5df2d14SHong Zhang 
1769b5df2d14SHong Zhang   /* build cache for off array entries formed */
1770ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
177126fbe8dcSKarl Rupp 
1772b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
17730298fd71SBarry Smith   b->colmap      = NULL;
17740298fd71SBarry Smith   b->garray      = NULL;
1775b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1776b5df2d14SHong Zhang 
1777b5df2d14SHong Zhang   /* stuff used in block assembly */
1778b5df2d14SHong Zhang   b->barray = 0;
1779b5df2d14SHong Zhang 
1780b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1781b5df2d14SHong Zhang   b->lvec    = 0;
1782b5df2d14SHong Zhang   b->Mvctx   = 0;
178340781036SHong Zhang   b->slvec0  = 0;
178440781036SHong Zhang   b->slvec0b = 0;
178540781036SHong Zhang   b->slvec1  = 0;
178640781036SHong Zhang   b->slvec1a = 0;
178740781036SHong Zhang   b->slvec1b = 0;
178840781036SHong Zhang   b->sMvctx  = 0;
1789b5df2d14SHong Zhang 
1790b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1791b5df2d14SHong Zhang   b->rowindices   = 0;
1792b5df2d14SHong Zhang   b->rowvalues    = 0;
1793b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1794b5df2d14SHong Zhang 
1795b5df2d14SHong Zhang   /* hash table stuff */
1796b5df2d14SHong Zhang   b->ht           = 0;
1797b5df2d14SHong Zhang   b->hd           = 0;
1798b5df2d14SHong Zhang   b->ht_size      = 0;
1799b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1800b5df2d14SHong Zhang   b->ht_fact      = 0;
1801b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1802b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1803b5df2d14SHong Zhang 
18047a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18057a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
18067a868f3eSHong Zhang 
180759ffdab8SBarry Smith   b->in_loc = 0;
180859ffdab8SBarry Smith   b->v_loc  = 0;
180959ffdab8SBarry Smith   b->n_loc  = 0;
181094ae4db5SBarry Smith 
1811bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1812bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1813bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1814bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1815bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1816bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1817aa5a9175SDahai Guo 
181823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
181923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
182023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
182123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
182226fbe8dcSKarl Rupp 
182317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
182494ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
182594ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
182694ae4db5SBarry Smith   if (flg) {
182794ae4db5SBarry Smith     PetscReal fact = 1.39;
182894ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
182994ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
183094ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
183194ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
183294ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
183394ae4db5SBarry Smith   }
183494ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1835b5df2d14SHong Zhang   PetscFunctionReturn(0);
1836b5df2d14SHong Zhang }
1837b5df2d14SHong Zhang 
1838209238afSKris Buschelman /*MC
1839002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1840209238afSKris Buschelman 
1841209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1842209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1843209238afSKris Buschelman 
1844209238afSKris Buschelman    Options Database Keys:
1845209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1846209238afSKris Buschelman 
1847209238afSKris Buschelman   Level: beginner
1848209238afSKris Buschelman 
1849209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1850209238afSKris Buschelman M*/
1851209238afSKris Buschelman 
18524a2ae208SSatish Balay #undef __FUNCT__
18534a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1854b5df2d14SHong Zhang /*@C
1855b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1856b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1857b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1858b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1859b5df2d14SHong Zhang 
1860b5df2d14SHong Zhang    Collective on Mat
1861b5df2d14SHong Zhang 
1862b5df2d14SHong Zhang    Input Parameters:
18631c4f3114SJed Brown +  B - the matrix
1864bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1865bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1866b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1867b5df2d14SHong Zhang            submatrix  (same for all local rows)
1868b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18696d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18700298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
187195742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1872b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1873b5df2d14SHong Zhang            submatrix (same for all local rows).
1874b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1875c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
18760298fd71SBarry Smith            (possibly different for each block row) or NULL.
1877b5df2d14SHong Zhang 
1878b5df2d14SHong Zhang 
1879b5df2d14SHong Zhang    Options Database Keys:
1880b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1881b5df2d14SHong Zhang                      block calculations (much slower)
1882b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1883b5df2d14SHong Zhang 
1884b5df2d14SHong Zhang    Notes:
1885b5df2d14SHong Zhang 
1886b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1887b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1888b5df2d14SHong Zhang 
188949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
189049a6f317SBarry Smith 
1891b5df2d14SHong Zhang    Storage Information:
1892b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1893b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1894b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1895b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1896b5df2d14SHong Zhang 
1897b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1898b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
18990298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1900b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1901b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1902b5df2d14SHong Zhang 
1903aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1904aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1905aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1906aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1907aa95bbe8SBarry Smith 
1908b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1909b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1910b5df2d14SHong Zhang 
1911b5df2d14SHong Zhang .vb
1912b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1913a4b1a0f6SJed Brown           --------------------------
1914c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
1915c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
1916c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
1917a4b1a0f6SJed Brown           --------------------------
1918b5df2d14SHong Zhang .ve
1919b5df2d14SHong Zhang 
1920b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1921b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19226d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19236d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1924b5df2d14SHong Zhang 
19256d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19266d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1927c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1928c2fc9fa9SBarry Smith 
1929b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1930b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1931b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1932b5df2d14SHong Zhang    matrices.
1933b5df2d14SHong Zhang 
1934b5df2d14SHong Zhang    Level: intermediate
1935b5df2d14SHong Zhang 
1936b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1937b5df2d14SHong Zhang 
1938ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
1939b5df2d14SHong Zhang @*/
19407087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1941b5df2d14SHong Zhang {
19424ac538c5SBarry Smith   PetscErrorCode ierr;
1943b5df2d14SHong Zhang 
1944b5df2d14SHong Zhang   PetscFunctionBegin;
19456ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19466ba663aaSJed Brown   PetscValidType(B,1);
19476ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19484ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1949b5df2d14SHong Zhang   PetscFunctionReturn(0);
1950b5df2d14SHong Zhang }
1951b5df2d14SHong Zhang 
19524a2ae208SSatish Balay #undef __FUNCT__
195369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1954a30f8f8cSSatish Balay /*@C
195569b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1956a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1957a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1958a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1959a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1960a30f8f8cSSatish Balay 
1961a30f8f8cSSatish Balay    Collective on MPI_Comm
1962a30f8f8cSSatish Balay 
1963a30f8f8cSSatish Balay    Input Parameters:
1964a30f8f8cSSatish Balay +  comm - MPI communicator
1965bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1966bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1967a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1968a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1969a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1970a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1971a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1972a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1973a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1974a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1975a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1976a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1977a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19786d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19790298fd71SBarry Smith            (possibly different for each block block row) or NULL.
198095742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
198195742e49SBarry Smith            set its value even if it is zero.
1982a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1983a30f8f8cSSatish Balay            submatrix (same for all local rows).
1984a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1985a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
19860298fd71SBarry Smith            each block row) or NULL.
1987a30f8f8cSSatish Balay 
1988a30f8f8cSSatish Balay    Output Parameter:
1989a30f8f8cSSatish Balay .  A - the matrix
1990a30f8f8cSSatish Balay 
1991a30f8f8cSSatish Balay    Options Database Keys:
1992a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1993a30f8f8cSSatish Balay                      block calculations (much slower)
1994a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1995a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1996a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1997a30f8f8cSSatish Balay 
1998175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1999ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2000175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2001175b88e8SBarry Smith 
2002a30f8f8cSSatish Balay    Notes:
2003d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20046d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2005d1be2dadSMatthew Knepley 
2006a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2007a30f8f8cSSatish Balay    (possibly both).
2008a30f8f8cSSatish Balay 
2009a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2010a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2011a30f8f8cSSatish Balay 
201249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
201349a6f317SBarry Smith 
2014a30f8f8cSSatish Balay    Storage Information:
2015a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2016a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2017a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2018a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2019a30f8f8cSSatish Balay 
2020a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2021a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
20220298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2023a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2024a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2025a30f8f8cSSatish Balay 
2026a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2027a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2028a30f8f8cSSatish Balay 
2029a30f8f8cSSatish Balay .vb
2030a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2031a4b1a0f6SJed Brown           --------------------------
2032c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2033c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2034c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2035a4b1a0f6SJed Brown           --------------------------
2036a30f8f8cSSatish Balay .ve
2037a30f8f8cSSatish Balay 
2038a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2039a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20406d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20416d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2042a30f8f8cSSatish Balay 
20436d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20446d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2045a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2046a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2047a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2048a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2049a30f8f8cSSatish Balay    matrices.
2050a30f8f8cSSatish Balay 
2051a30f8f8cSSatish Balay    Level: intermediate
2052a30f8f8cSSatish Balay 
2053a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2054a30f8f8cSSatish Balay 
205569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2056a30f8f8cSSatish Balay @*/
2057a30f8f8cSSatish Balay 
205869b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2059a30f8f8cSSatish Balay {
20606849ba73SBarry Smith   PetscErrorCode ierr;
20611302d50aSBarry Smith   PetscMPIInt    size;
2062a30f8f8cSSatish Balay 
2063a30f8f8cSSatish Balay   PetscFunctionBegin;
2064f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2065f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2066273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2067273d9f13SBarry Smith   if (size > 1) {
2068b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2069b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2070273d9f13SBarry Smith   } else {
2071273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2072273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2073273d9f13SBarry Smith   }
2074a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2075a30f8f8cSSatish Balay }
2076a30f8f8cSSatish Balay 
2077a30f8f8cSSatish Balay 
20784a2ae208SSatish Balay #undef __FUNCT__
20794a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2081a30f8f8cSSatish Balay {
2082a30f8f8cSSatish Balay   Mat            mat;
2083a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2084dfbe8321SBarry Smith   PetscErrorCode ierr;
2085d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2086387bc808SHong Zhang   PetscScalar    *array;
2087a30f8f8cSSatish Balay 
2088a30f8f8cSSatish Balay   PetscFunctionBegin;
2089a30f8f8cSSatish Balay   *newmat = 0;
209026fbe8dcSKarl Rupp 
2091ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2092d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20937adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20941d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
20951e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
20961e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2097e1b6402fSHong Zhang 
2098d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2099273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
210082327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21017fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21027fff6886SHong Zhang 
2103b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2104a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2105a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2106a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2107a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2108a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2109a30f8f8cSSatish Balay 
2110899cda47SBarry Smith 
2111a30f8f8cSSatish Balay   a->size         = oldmat->size;
2112a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2113a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2114a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2115a30f8f8cSSatish Balay   a->rowindices   = 0;
2116a30f8f8cSSatish Balay   a->rowvalues    = 0;
2117a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2118a30f8f8cSSatish Balay   a->barray       = 0;
2119899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2120899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2121899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2122899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2123a30f8f8cSSatish Balay 
2124a30f8f8cSSatish Balay   /* hash table stuff */
2125a30f8f8cSSatish Balay   a->ht           = 0;
2126a30f8f8cSSatish Balay   a->hd           = 0;
2127a30f8f8cSSatish Balay   a->ht_size      = 0;
2128a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2129a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2130a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2131a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2132a30f8f8cSSatish Balay 
2133899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2134a30f8f8cSSatish Balay   if (oldmat->colmap) {
2135a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2136a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2137a30f8f8cSSatish Balay #else
2138854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
21393bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21401302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2141a30f8f8cSSatish Balay #endif
2142a30f8f8cSSatish Balay   } else a->colmap = 0;
2143387bc808SHong Zhang 
2144a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2145785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
21463bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21471302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2148a30f8f8cSSatish Balay   } else a->garray = 0;
2149a30f8f8cSSatish Balay 
2150ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
21523bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2153a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
21543bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
215582327fa8SHong Zhang 
215682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
21573bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
215882327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
21593bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2160387bc808SHong Zhang 
2161387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21621ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2163778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2164778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21651ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21661ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2167778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21681ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
21693bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
21703bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
21713bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
21723bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
21733bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2174387bc808SHong Zhang 
2175387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2176387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2177387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
21783bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
217982327fa8SHong Zhang 
2180a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
21813bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
21833bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2184140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2185a30f8f8cSSatish Balay   *newmat = mat;
2186a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2187a30f8f8cSSatish Balay }
2188a30f8f8cSSatish Balay 
21894a2ae208SSatish Balay #undef __FUNCT__
21905bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2191112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
219295936485SShri Abhyankar {
219395936485SShri Abhyankar   PetscErrorCode ierr;
219495936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
219595936485SShri Abhyankar   PetscScalar    *vals,*buf;
2196ce94432eSBarry Smith   MPI_Comm       comm;
219795936485SShri Abhyankar   MPI_Status     status;
2198adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2199adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
220095936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
22013059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
220295936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
220395936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
220495936485SShri Abhyankar   int            fd;
220595936485SShri Abhyankar 
220695936485SShri Abhyankar   PetscFunctionBegin;
2207ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
22080298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
22090298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
221095936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
22113059b6faSBarry Smith   if (bs < 0) bs = 1;
221295936485SShri Abhyankar 
221395936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
221495936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
221595936485SShri Abhyankar   if (!rank) {
221695936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
221795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
221895936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
221995936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
222095936485SShri Abhyankar   }
222195936485SShri Abhyankar 
222295936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
222395936485SShri Abhyankar 
222495936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
222526fbe8dcSKarl Rupp   M    = header[1];
222626fbe8dcSKarl Rupp   N    = header[2];
222795936485SShri Abhyankar 
222895936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
222995936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
223095936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
223195936485SShri Abhyankar 
223295936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
223395936485SShri Abhyankar   if (sizesset) {
223495936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
223595936485SShri Abhyankar   }
2236abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2237abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
223895936485SShri Abhyankar 
223995936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
224095936485SShri Abhyankar 
224195936485SShri Abhyankar   /*
224295936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
224395936485SShri Abhyankar      divisible by the blocksize
224495936485SShri Abhyankar   */
224595936485SShri Abhyankar   Mbs        = M/bs;
224695936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
224795936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
224895936485SShri Abhyankar   else                  Mbs++;
224995936485SShri Abhyankar   if (extra_rows &&!rank) {
225095936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
225195936485SShri Abhyankar   }
225295936485SShri Abhyankar 
225395936485SShri Abhyankar   /* determine ownership of all rows */
225495936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
225595936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
225695936485SShri Abhyankar     m   = mbs*bs;
225795936485SShri Abhyankar   } else { /* User Set */
225895936485SShri Abhyankar     m   = newmat->rmap->n;
225995936485SShri Abhyankar     mbs = m/bs;
226095936485SShri Abhyankar   }
2261dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
22624dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
226395936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
226495936485SShri Abhyankar   rowners[0] = 0;
226595936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
226695936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
226795936485SShri Abhyankar   rstart = rowners[rank];
226895936485SShri Abhyankar   rend   = rowners[rank+1];
226995936485SShri Abhyankar 
227095936485SShri Abhyankar   /* distribute row lengths to all processors */
2271785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
227295936485SShri Abhyankar   if (!rank) {
2273854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
227495936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
227595936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2276785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
227795936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
227895936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
227995936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
228095936485SShri Abhyankar   } else {
228195936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
228295936485SShri Abhyankar   }
228395936485SShri Abhyankar 
228495936485SShri Abhyankar   if (!rank) {   /* procs[0] */
228595936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2286785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
228795936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
228895936485SShri Abhyankar     for (i=0; i<size; i++) {
228995936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
229095936485SShri Abhyankar         procsnz[i] += rowlengths[j];
229195936485SShri Abhyankar       }
229295936485SShri Abhyankar     }
229395936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
229495936485SShri Abhyankar 
229595936485SShri Abhyankar     /* determine max buffer needed and allocate it */
229695936485SShri Abhyankar     maxnz = 0;
229795936485SShri Abhyankar     for (i=0; i<size; i++) {
229895936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
229995936485SShri Abhyankar     }
2300785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
230195936485SShri Abhyankar 
230295936485SShri Abhyankar     /* read in my part of the matrix column indices  */
230395936485SShri Abhyankar     nz     = procsnz[0];
2304785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
230595936485SShri Abhyankar     mycols = ibuf;
230695936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
230795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
230826fbe8dcSKarl Rupp     if (size == 1) {
230926fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
231026fbe8dcSKarl Rupp     }
231195936485SShri Abhyankar 
231295936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
231395936485SShri Abhyankar     for (i=1; i<size-1; i++) {
231495936485SShri Abhyankar       nz   = procsnz[i];
231595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
231695936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
231795936485SShri Abhyankar     }
231895936485SShri Abhyankar     /* read in the stuff for the last proc */
231995936485SShri Abhyankar     if (size != 1) {
232095936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
232195936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
232295936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
232395936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
232495936485SShri Abhyankar     }
232595936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
232695936485SShri Abhyankar   } else {  /* procs[i], i>0 */
232795936485SShri Abhyankar     /* determine buffer space needed for message */
232895936485SShri Abhyankar     nz = 0;
232926fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2330785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
233195936485SShri Abhyankar     mycols = ibuf;
233295936485SShri Abhyankar     /* receive message of column indices*/
233395936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
233495936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
233595936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
233695936485SShri Abhyankar   }
233795936485SShri Abhyankar 
233895936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2339dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2340dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
234195936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234295936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234395936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234495936485SShri Abhyankar   rowcount = 0;
234595936485SShri Abhyankar   nzcount  = 0;
234695936485SShri Abhyankar   for (i=0; i<mbs; i++) {
234795936485SShri Abhyankar     dcount  = 0;
234895936485SShri Abhyankar     odcount = 0;
234995936485SShri Abhyankar     for (j=0; j<bs; j++) {
235095936485SShri Abhyankar       kmax = locrowlens[rowcount];
235195936485SShri Abhyankar       for (k=0; k<kmax; k++) {
235295936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
235395936485SShri Abhyankar         if (!mask[tmp]) {
235495936485SShri Abhyankar           mask[tmp] = 1;
235595936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
235695936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
235795936485SShri Abhyankar         }
235895936485SShri Abhyankar       }
235995936485SShri Abhyankar       rowcount++;
236095936485SShri Abhyankar     }
236195936485SShri Abhyankar 
236295936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
236395936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
236495936485SShri Abhyankar 
236595936485SShri Abhyankar     /* zero out the mask elements we set */
236695936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
236795936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
236895936485SShri Abhyankar   }
236995936485SShri Abhyankar   if (!sizesset) {
237095936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
237195936485SShri Abhyankar   }
237295936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
23736816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
237495936485SShri Abhyankar 
237595936485SShri Abhyankar   if (!rank) {
2376785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
237795936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
237895936485SShri Abhyankar     nz     = procsnz[0];
237995936485SShri Abhyankar     vals   = buf;
238095936485SShri Abhyankar     mycols = ibuf;
238195936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
238295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
238326fbe8dcSKarl Rupp     if (size == 1) {
238426fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
238526fbe8dcSKarl Rupp     }
238695936485SShri Abhyankar 
238795936485SShri Abhyankar     /* insert into matrix */
238895936485SShri Abhyankar     jj = rstart*bs;
238995936485SShri Abhyankar     for (i=0; i<m; i++) {
239095936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
239195936485SShri Abhyankar       mycols += locrowlens[i];
239295936485SShri Abhyankar       vals   += locrowlens[i];
239395936485SShri Abhyankar       jj++;
239495936485SShri Abhyankar     }
239595936485SShri Abhyankar 
239695936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
239795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
239895936485SShri Abhyankar       nz   = procsnz[i];
239995936485SShri Abhyankar       vals = buf;
240095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
240195936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
240295936485SShri Abhyankar     }
240395936485SShri Abhyankar     /* the last proc */
240495936485SShri Abhyankar     if (size != 1) {
240595936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
240695936485SShri Abhyankar       vals = buf;
240795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
240895936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
240995936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
241095936485SShri Abhyankar     }
241195936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
241295936485SShri Abhyankar 
241395936485SShri Abhyankar   } else {
241495936485SShri Abhyankar     /* receive numeric values */
2415785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
241695936485SShri Abhyankar 
241795936485SShri Abhyankar     /* receive message of values*/
241895936485SShri Abhyankar     vals   = buf;
241995936485SShri Abhyankar     mycols = ibuf;
242095936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
242195936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
242295936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
242395936485SShri Abhyankar 
242495936485SShri Abhyankar     /* insert into matrix */
242595936485SShri Abhyankar     jj = rstart*bs;
242695936485SShri Abhyankar     for (i=0; i<m; i++) {
242795936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
242895936485SShri Abhyankar       mycols += locrowlens[i];
242995936485SShri Abhyankar       vals   += locrowlens[i];
243095936485SShri Abhyankar       jj++;
243195936485SShri Abhyankar     }
243295936485SShri Abhyankar   }
243395936485SShri Abhyankar 
243495936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
243595936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
243695936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
243795936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
243895936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
243995936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
244095936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244195936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244295936485SShri Abhyankar   PetscFunctionReturn(0);
244395936485SShri Abhyankar }
244495936485SShri Abhyankar 
244595936485SShri Abhyankar #undef __FUNCT__
24464a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2447dcf5cc72SBarry Smith /*XXXXX@
2448a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2449a30f8f8cSSatish Balay 
2450a30f8f8cSSatish Balay    Input Parameters:
2451a30f8f8cSSatish Balay .  mat  - the matrix
2452a30f8f8cSSatish Balay .  fact - factor
2453a30f8f8cSSatish Balay 
2454c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2455a30f8f8cSSatish Balay 
2456a30f8f8cSSatish Balay    Level: advanced
2457a30f8f8cSSatish Balay 
2458a30f8f8cSSatish Balay   Notes:
2459a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2460a30f8f8cSSatish Balay 
2461a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2462a30f8f8cSSatish Balay 
2463a30f8f8cSSatish Balay .seealso: MatSetOption()
2464dcf5cc72SBarry Smith @XXXXX*/
2465dcf5cc72SBarry Smith 
246624d5174aSHong Zhang 
24674a2ae208SSatish Balay #undef __FUNCT__
2468985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2469985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
247024d5174aSHong Zhang {
247124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2472f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2473ca54ac64SHong Zhang   PetscReal      atmp;
247487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2475dfbe8321SBarry Smith   PetscErrorCode ierr;
24761302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24771302d50aSBarry Smith   PetscMPIInt    rank,size;
24781302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
247987828ca2SBarry Smith   PetscScalar    *va;
24808a1c53f2SBarry Smith   MatScalar      *ba;
2481f4c0e9e4SHong Zhang   MPI_Status     stat;
248224d5174aSHong Zhang 
248324d5174aSHong Zhang   PetscFunctionBegin;
2484e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
24850298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
24861ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2487f4c0e9e4SHong Zhang 
2488ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2489ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2490f4c0e9e4SHong Zhang 
2491d0f46423SBarry Smith   bs  = A->rmap->bs;
2492f4c0e9e4SHong Zhang   mbs = a->mbs;
2493f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2494f4c0e9e4SHong Zhang   ba  = b->a;
2495f4c0e9e4SHong Zhang   bi  = b->i;
2496f4c0e9e4SHong Zhang   bj  = b->j;
2497f4c0e9e4SHong Zhang 
2498f4c0e9e4SHong Zhang   /* find ownerships */
2499d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2500f4c0e9e4SHong Zhang 
2501f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2502785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2503ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2504f4c0e9e4SHong Zhang 
2505f4c0e9e4SHong Zhang   /* row_max for B */
2506b8475685SHong Zhang   if (rank != size-1) {
2507f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2508f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2509f4c0e9e4SHong Zhang       brow  = bs*i;
2510f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2511f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2512f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2513ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
251404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2515f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2516f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2517ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2518ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2519f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2520f4c0e9e4SHong Zhang           }
2521f4c0e9e4SHong Zhang         }
2522f4c0e9e4SHong Zhang         bj++;
2523f4c0e9e4SHong Zhang       }
2524f4c0e9e4SHong Zhang     }
2525f4c0e9e4SHong Zhang 
2526f4c0e9e4SHong Zhang     /* send values to its owners */
2527f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2528f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2529ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2530ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2531ca54ac64SHong Zhang     }
2532f4c0e9e4SHong Zhang   }
2533f4c0e9e4SHong Zhang 
2534f4c0e9e4SHong Zhang   /* receive values */
2535ca54ac64SHong Zhang   if (rank) {
2536f4c0e9e4SHong Zhang     rvalues = work;
2537ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2538f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2539ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2540f4c0e9e4SHong Zhang       /* process values */
2541f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2542ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2543f4c0e9e4SHong Zhang       }
2544f4c0e9e4SHong Zhang     }
2545ca54ac64SHong Zhang   }
2546f4c0e9e4SHong Zhang 
25471ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2548ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
254924d5174aSHong Zhang   PetscFunctionReturn(0);
255024d5174aSHong Zhang }
25512798e883SHong Zhang 
25522798e883SHong Zhang #undef __FUNCT__
255341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
255441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25552798e883SHong Zhang {
25562798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2557dfbe8321SBarry Smith   PetscErrorCode    ierr;
2558d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25593649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2560ffe4fb16SHong Zhang   Vec               bb1;
25613649974fSBarry Smith   const PetscScalar *b;
2562ffe4fb16SHong Zhang 
2563ffe4fb16SHong Zhang   PetscFunctionBegin;
2564e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2565e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2566ffe4fb16SHong Zhang 
2567a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
256841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2569a2b30743SBarry Smith     PetscFunctionReturn(0);
2570a2b30743SBarry Smith   }
2571a2b30743SBarry Smith 
2572ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2573ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
257441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2575ffe4fb16SHong Zhang       its--;
2576ffe4fb16SHong Zhang     }
2577ffe4fb16SHong Zhang 
2578ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2579ffe4fb16SHong Zhang     while (its--) {
2580ffe4fb16SHong Zhang 
2581ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2582ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2583ffe4fb16SHong Zhang 
2584ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25851ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25861ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2587ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25881ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2589ffe4fb16SHong Zhang 
2590efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2591ffe4fb16SHong Zhang 
2592ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25931ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25943649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2595ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25961ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2597ffe4fb16SHong Zhang 
2598ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2599fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2600ffe4fb16SHong Zhang 
2601ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26021ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2603a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2604ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2605ffe4fb16SHong Zhang 
2606ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2607ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2608ffe4fb16SHong Zhang 
2609ffe4fb16SHong Zhang       /* local diagonal sweep */
261041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2611ffe4fb16SHong Zhang     }
26126bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2613fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
261441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2615fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
261641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2617fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2618fa22f6d0SBarry Smith     Vec               xx1;
2619ace3abfcSBarry Smith     PetscBool         hasop;
262020f1ed55SBarry Smith     const PetscScalar *diag;
2621887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
262220f1ed55SBarry Smith     PetscInt          i,n;
2623fa22f6d0SBarry Smith 
2624fa22f6d0SBarry Smith     if (!mat->xx1) {
2625fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2626fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2627fa22f6d0SBarry Smith     }
2628fa22f6d0SBarry Smith     xx1 = mat->xx1;
2629fa22f6d0SBarry Smith     bb1 = mat->bb1;
2630fa22f6d0SBarry Smith 
263141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2632fa22f6d0SBarry Smith 
2633fa22f6d0SBarry Smith     if (!mat->diag) {
2634effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26352a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2636fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2637fa22f6d0SBarry Smith     }
2638fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2639fa22f6d0SBarry Smith 
2640fa22f6d0SBarry Smith     if (hasop) {
2641fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2642887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
264320f1ed55SBarry Smith     } else {
264420f1ed55SBarry Smith       /*
264520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
264620f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2647887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
264820f1ed55SBarry Smith       */
264920f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26503649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26513649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
265220f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
265320f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2654887ee2caSBarry Smith       if (omega == 1.0) {
265526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
265620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2657887ee2caSBarry Smith       } else {
265826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2659887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2660887ee2caSBarry Smith       }
266120f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26623649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26633649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
266420f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
266520f1ed55SBarry Smith     }
2666fa22f6d0SBarry Smith 
2667fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2668fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2669fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2670fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2671fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2672fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2673fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2674fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2675fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2676fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2677effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2678fa22f6d0SBarry Smith 
2679fa22f6d0SBarry Smith     /* local sweep */
268041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2681fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2682f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2683ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2684ffe4fb16SHong Zhang }
2685ffe4fb16SHong Zhang 
2686ffe4fb16SHong Zhang #undef __FUNCT__
268741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
268841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2689ffe4fb16SHong Zhang {
2690ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2691dfbe8321SBarry Smith   PetscErrorCode ierr;
26922798e883SHong Zhang   Vec            lvec1,bb1;
26932798e883SHong Zhang 
26942798e883SHong Zhang   PetscFunctionBegin;
2695e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2696e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26972798e883SHong Zhang 
2698c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
26992798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
270041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27012798e883SHong Zhang       its--;
27022798e883SHong Zhang     }
27032798e883SHong Zhang 
27042798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27052798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27062798e883SHong Zhang     while (its--) {
2707ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27082798e883SHong Zhang 
27092798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27102798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2711efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27122798e883SHong Zhang 
2713ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27142798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2715ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27162798e883SHong Zhang 
27172798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2718efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27192798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27202798e883SHong Zhang 
2721ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27222798e883SHong Zhang 
2723c14dc6b6SHong Zhang       /* diagonal sweep */
272441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27252798e883SHong Zhang     }
27266bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27276bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27286bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27292798e883SHong Zhang   PetscFunctionReturn(0);
27302798e883SHong Zhang }
27312798e883SHong Zhang 
2732dfb205c3SBarry Smith #undef __FUNCT__
2733dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2734dfb205c3SBarry Smith /*@
2735dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2736dfb205c3SBarry Smith          CSR format the local rows.
2737dfb205c3SBarry Smith 
2738dfb205c3SBarry Smith    Collective on MPI_Comm
2739dfb205c3SBarry Smith 
2740dfb205c3SBarry Smith    Input Parameters:
2741dfb205c3SBarry Smith +  comm - MPI communicator
2742dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2743dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2744dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2745dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2746dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2747dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2748dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2749dfb205c3SBarry Smith .   i - row indices
2750dfb205c3SBarry Smith .   j - column indices
2751dfb205c3SBarry Smith -   a - matrix values
2752dfb205c3SBarry Smith 
2753dfb205c3SBarry Smith    Output Parameter:
2754dfb205c3SBarry Smith .   mat - the matrix
2755dfb205c3SBarry Smith 
2756dfb205c3SBarry Smith    Level: intermediate
2757dfb205c3SBarry Smith 
2758dfb205c3SBarry Smith    Notes:
2759dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2760dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2761dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2762dfb205c3SBarry Smith 
2763dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2764dfb205c3SBarry Smith 
2765dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2766dfb205c3SBarry Smith 
2767dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
276869b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2769dfb205c3SBarry Smith @*/
27707087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2771dfb205c3SBarry Smith {
2772dfb205c3SBarry Smith   PetscErrorCode ierr;
2773dfb205c3SBarry Smith 
2774dfb205c3SBarry Smith 
2775dfb205c3SBarry Smith   PetscFunctionBegin;
2776f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2777dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2778dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2779dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2780dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2781dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2782dfb205c3SBarry Smith   PetscFunctionReturn(0);
2783dfb205c3SBarry Smith }
2784dfb205c3SBarry Smith 
2785dfb205c3SBarry Smith 
2786dfb205c3SBarry Smith #undef __FUNCT__
2787dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2788dfb205c3SBarry Smith /*@C
2789dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2790dfb205c3SBarry Smith    (the default parallel PETSc format).
2791dfb205c3SBarry Smith 
2792dfb205c3SBarry Smith    Collective on MPI_Comm
2793dfb205c3SBarry Smith 
2794dfb205c3SBarry Smith    Input Parameters:
27951c4f3114SJed Brown +  B - the matrix
2796dfb205c3SBarry Smith .  bs - the block size
2797dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2798dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2799dfb205c3SBarry Smith -  v - optional values in the matrix
2800dfb205c3SBarry Smith 
2801dfb205c3SBarry Smith    Level: developer
2802dfb205c3SBarry Smith 
2803dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2804dfb205c3SBarry Smith 
280569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2806dfb205c3SBarry Smith @*/
28077087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2808dfb205c3SBarry Smith {
28094ac538c5SBarry Smith   PetscErrorCode ierr;
2810dfb205c3SBarry Smith 
2811dfb205c3SBarry Smith   PetscFunctionBegin;
28124ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2813dfb205c3SBarry Smith   PetscFunctionReturn(0);
2814dfb205c3SBarry Smith }
2815dfb205c3SBarry Smith 
2816de4b53ebSHong Zhang #undef __FUNCT__
281710c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
281810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28194dcd73b1SHong Zhang {
28204dcd73b1SHong Zhang   PetscErrorCode ierr;
282110c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
282210c56fdeSHong Zhang   PetscInt       *indx;
282310c56fdeSHong Zhang   PetscScalar    *values;
2824dfb205c3SBarry Smith 
28254dcd73b1SHong Zhang   PetscFunctionBegin;
28264dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
282710c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
282810c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
282910c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
283010c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
28314dcd73b1SHong Zhang 
283210c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
283310c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
283410c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
283510c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
283610c56fdeSHong Zhang     }
283710c56fdeSHong Zhang     /* Check sum(n) = Nbs */
283810c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
283910c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
284010c56fdeSHong Zhang 
284110c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
284210c56fdeSHong Zhang     rstart -= mbs;
28434dcd73b1SHong Zhang 
28444dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
284510c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
2846e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
284710c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
28484dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
28494dcd73b1SHong Zhang       nnz = nnz/bs;
28504dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
28514dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
28524dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
28534dcd73b1SHong Zhang     }
2854e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
28554dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
28564dcd73b1SHong Zhang 
28574dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
285810c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
28594dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
28604dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
28614dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
28624dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
28634dcd73b1SHong Zhang   }
28644dcd73b1SHong Zhang 
286510c56fdeSHong Zhang   /* numeric phase */
28664dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
286710c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
28684dcd73b1SHong Zhang 
2869e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
28704dcd73b1SHong Zhang   for (i=0; i<m; i++) {
28714dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
28724dcd73b1SHong Zhang     Ii   = i + rstart;
287310c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
28744dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
28754dcd73b1SHong Zhang   }
2876e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
287710c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
287810c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28794dcd73b1SHong Zhang   PetscFunctionReturn(0);
28804dcd73b1SHong Zhang }
2881