1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 267087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 417087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 55a30f8f8cSSatish Balay { \ 56a30f8f8cSSatish Balay \ 57a30f8f8cSSatish Balay brow = row/bs; \ 58a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 59a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 60a30f8f8cSSatish Balay bcol = col/bs; \ 61a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 62a30f8f8cSSatish Balay low = 0; high = nrow; \ 63a30f8f8cSSatish Balay while (high-low > 3) { \ 64a30f8f8cSSatish Balay t = (low+high)/2; \ 65a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 66a30f8f8cSSatish Balay else low = t; \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 69a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 70a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 71a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 72a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 73a30f8f8cSSatish Balay else *bap = value; \ 74a30f8f8cSSatish Balay goto a_noinsert; \ 75a30f8f8cSSatish Balay } \ 76a30f8f8cSSatish Balay } \ 77a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 78e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 79fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 80a30f8f8cSSatish Balay N = nrow++ - 1; \ 81a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 82a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 83a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 84a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 85a30f8f8cSSatish Balay } \ 86a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 87a30f8f8cSSatish Balay rp[_i] = bcol; \ 88a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 89a30f8f8cSSatish Balay a_noinsert:; \ 90a30f8f8cSSatish Balay ailen[brow] = nrow; \ 91a30f8f8cSSatish Balay } 92e5e170daSBarry Smith 93a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 94a30f8f8cSSatish Balay { \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 97a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto b_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 116e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 117fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 118a30f8f8cSSatish Balay N = nrow++ - 1; \ 119a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 120a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 121a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 122a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay } \ 124a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 125a30f8f8cSSatish Balay rp[_i] = bcol; \ 126a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 127a30f8f8cSSatish Balay b_noinsert:; \ 128a30f8f8cSSatish Balay bilen[brow] = nrow; \ 129a30f8f8cSSatish Balay } 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 132a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 133a30f8f8cSSatish Balay */ 1344a2ae208SSatish Balay #undef __FUNCT__ 135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 137a30f8f8cSSatish Balay { 138a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 139a30f8f8cSSatish Balay MatScalar value; 140ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 141dfbe8321SBarry Smith PetscErrorCode ierr; 1421302d50aSBarry Smith PetscInt i,j,row,col; 143d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 144d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 145d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay /* Some Variables required in the macro */ 148a30f8f8cSSatish Balay Mat A = baij->A; 149a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1501302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 151a30f8f8cSSatish Balay MatScalar *aa=a->a; 152a30f8f8cSSatish Balay 153a30f8f8cSSatish Balay Mat B = baij->B; 154a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1551302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 156a30f8f8cSSatish Balay MatScalar *ba=b->a; 157a30f8f8cSSatish Balay 1581302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1591302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 160a30f8f8cSSatish Balay MatScalar *ap,*bap; 161a30f8f8cSSatish Balay 162a30f8f8cSSatish Balay /* for stash */ 163910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 164910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 16771fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 168a30f8f8cSSatish Balay if (!baij->donotstash) { 16959ffdab8SBarry Smith if (n > baij->n_loc) { 17059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17259ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith baij->n_loc = n; 17559ffdab8SBarry Smith } 17659ffdab8SBarry Smith in_loc = baij->in_loc; 17759ffdab8SBarry Smith v_loc = baij->v_loc; 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 181a30f8f8cSSatish Balay if (im[i] < 0) continue; 1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 183e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 184a30f8f8cSSatish Balay #endif 185a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 186a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 187a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18801b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18901b2bd88SHong Zhang if (a->ignore_ltriangular) { 19001b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19101b2bd88SHong Zhang } else { 192e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19301b2bd88SHong Zhang } 19401b2bd88SHong Zhang } 195a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 196a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 197a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 198a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 199*db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 200*db4deed7SKarl Rupp else value = v[i+j*m]; 201a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 202a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 203a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 205cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 206a30f8f8cSSatish Balay #endif 207a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 208a30f8f8cSSatish Balay if (mat->was_assembled) { 209a30f8f8cSSatish Balay if (!baij->colmap) { 210ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 211a30f8f8cSSatish Balay } 212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 213a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21471730473SSatish Balay col = col - 1; 215a30f8f8cSSatish Balay #else 21671730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 217a30f8f8cSSatish Balay #endif 218a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 219ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 220a30f8f8cSSatish Balay col = in[j]; 221a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 222a30f8f8cSSatish Balay B = baij->B; 223a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 224a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 225a30f8f8cSSatish Balay ba=b->a; 22671730473SSatish Balay } else col += in[j]%bs; 227a30f8f8cSSatish Balay } else col = in[j]; 228*db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 229*db4deed7SKarl Rupp else value = v[i+j*m]; 230a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 231a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } else { /* off processor entry */ 2354cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 236a30f8f8cSSatish Balay if (!baij->donotstash) { 2375080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 238a30f8f8cSSatish Balay n_loc = 0; 239a30f8f8cSSatish Balay for (j=0; j<n; j++) { 240f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 241a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 242a30f8f8cSSatish Balay if (roworiented) { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 244a30f8f8cSSatish Balay } else { 245a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay n_loc++; 248a30f8f8cSSatish Balay } 249b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 257dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 258dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 2600880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 261f15d580aSBarry Smith const MatScalar *value; 262f15d580aSBarry Smith MatScalar *barray=baij->barray; 263ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 264dfbe8321SBarry Smith PetscErrorCode ierr; 265899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 266899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 267d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2680880e062SHong Zhang 269a30f8f8cSSatish Balay PetscFunctionBegin; 2700880e062SHong Zhang if (!barray) { 2710880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2720880e062SHong Zhang baij->barray = barray; 2730880e062SHong Zhang } 2740880e062SHong Zhang 2750880e062SHong Zhang if (roworiented) { 2760880e062SHong Zhang stepval = (n-1)*bs; 2770880e062SHong Zhang } else { 2780880e062SHong Zhang stepval = (m-1)*bs; 2790880e062SHong Zhang } 2800880e062SHong Zhang for (i=0; i<m; i++) { 2810880e062SHong Zhang if (im[i] < 0) continue; 2822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 283e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2840880e062SHong Zhang #endif 2850880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2860880e062SHong Zhang row = im[i] - rstart; 2870880e062SHong Zhang for (j=0; j<n; j++) { 288f3f98c53SJed Brown if (im[i] > in[j]) { 289f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 290e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 291f3f98c53SJed Brown } 2920880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2930880e062SHong Zhang if ((roworiented) && (n == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2950880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 296f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2970880e062SHong Zhang } else { /* Here a copy is required */ 2980880e062SHong Zhang if (roworiented) { 2990880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3000880e062SHong Zhang } else { 3010880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3020880e062SHong Zhang } 3030880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3040880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3050880e062SHong Zhang *barray++ = *value++; 3060880e062SHong Zhang } 3070880e062SHong Zhang } 3080880e062SHong Zhang barray -=bs2; 3090880e062SHong Zhang } 3100880e062SHong Zhang 3110880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3120880e062SHong Zhang col = in[j] - cstart; 3130880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3140880e062SHong Zhang } 3150880e062SHong Zhang else if (in[j] < 0) continue; 3162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 317cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3180880e062SHong Zhang #endif 3190880e062SHong Zhang else { 3200880e062SHong Zhang if (mat->was_assembled) { 3210880e062SHong Zhang if (!baij->colmap) { 322ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3230880e062SHong Zhang } 3240880e062SHong Zhang 3252515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3260880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3271302d50aSBarry Smith { PetscInt data; 3280880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 329e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3300880e062SHong Zhang } 3310880e062SHong Zhang #else 332e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3330880e062SHong Zhang #endif 3340880e062SHong Zhang #endif 3350880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3360880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3370880e062SHong Zhang col = (col - 1)/bs; 3380880e062SHong Zhang #else 3390880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3400880e062SHong Zhang #endif 3410880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 342ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3430880e062SHong Zhang col = in[j]; 3440880e062SHong Zhang } 3450880e062SHong Zhang } 3460880e062SHong Zhang else col = in[j]; 347e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3480880e062SHong Zhang } 3490880e062SHong Zhang } 3500880e062SHong Zhang } else { 3514cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3520880e062SHong Zhang if (!baij->donotstash) { 3530880e062SHong Zhang if (roworiented) { 3540880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3550880e062SHong Zhang } else { 3560880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3570880e062SHong Zhang } 3580880e062SHong Zhang } 3590880e062SHong Zhang } 3600880e062SHong Zhang } 3610880e062SHong Zhang PetscFunctionReturn(0); 362a30f8f8cSSatish Balay } 363a30f8f8cSSatish Balay 3644a2ae208SSatish Balay #undef __FUNCT__ 3654a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3661302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 367a30f8f8cSSatish Balay { 368f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3696849ba73SBarry Smith PetscErrorCode ierr; 370d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 371d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 372a30f8f8cSSatish Balay 373a30f8f8cSSatish Balay PetscFunctionBegin; 374a30f8f8cSSatish Balay for (i=0; i<m; i++) { 375e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 376e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 377a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 378a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 379a30f8f8cSSatish Balay for (j=0; j<n; j++) { 380e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 381e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 382a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 383a30f8f8cSSatish Balay col = idxn[j] - bscstart; 384c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 385a30f8f8cSSatish Balay } else { 386a30f8f8cSSatish Balay if (!baij->colmap) { 387ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 388a30f8f8cSSatish Balay } 389a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 390a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 391a30f8f8cSSatish Balay data --; 392a30f8f8cSSatish Balay #else 393a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 394a30f8f8cSSatish Balay #endif 395a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 396a30f8f8cSSatish Balay else { 397a30f8f8cSSatish Balay col = data + idxn[j]%bs; 398e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay } else { 403e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay PetscFunctionReturn(0); 407a30f8f8cSSatish Balay } 408a30f8f8cSSatish Balay 4094a2ae208SSatish Balay #undef __FUNCT__ 4104a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 411dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 412a30f8f8cSSatish Balay { 413a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 414dfbe8321SBarry Smith PetscErrorCode ierr; 415a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 416a30f8f8cSSatish Balay 417a30f8f8cSSatish Balay PetscFunctionBegin; 418a30f8f8cSSatish Balay if (baij->size == 1) { 419a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 420a30f8f8cSSatish Balay } else { 421a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 422f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 423a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 424a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 425a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 426a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 427c3aae356SJed Brown ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4288f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 429a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4300b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4310b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4320b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4330b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 434899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 435d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4360b8dc8d2SHong Zhang MatScalar *v; 4370b8dc8d2SHong Zhang 43874ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 439d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4400b8dc8d2SHong Zhang /* Amat */ 4410b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4420b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4430b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4440b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4450b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4460b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4470b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4480b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4490b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4500b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4510b8dc8d2SHong Zhang /* non-diagonal block */ 4520b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang } 4550b8dc8d2SHong Zhang } 4560b8dc8d2SHong Zhang } 4570b8dc8d2SHong Zhang /* Bmat */ 4580b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4590b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4600b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4610b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4620b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4630b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4640b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4650b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4660b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4670b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4680b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4690b8dc8d2SHong Zhang } 4700b8dc8d2SHong Zhang } 4710b8dc8d2SHong Zhang } 4720b8dc8d2SHong Zhang } 473d9822059SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4740b8dc8d2SHong Zhang *norm = 0.0; 475d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4760b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4770b8dc8d2SHong Zhang } 47874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 479a30f8f8cSSatish Balay } else { 480e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 481a30f8f8cSSatish Balay } 482a30f8f8cSSatish Balay } 483a30f8f8cSSatish Balay PetscFunctionReturn(0); 484a30f8f8cSSatish Balay } 485a30f8f8cSSatish Balay 4864a2ae208SSatish Balay #undef __FUNCT__ 4874a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 488dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 489a30f8f8cSSatish Balay { 490a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 491dfbe8321SBarry Smith PetscErrorCode ierr; 4921302d50aSBarry Smith PetscInt nstash,reallocs; 493a30f8f8cSSatish Balay InsertMode addv; 494a30f8f8cSSatish Balay 495a30f8f8cSSatish Balay PetscFunctionBegin; 4964cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 497a30f8f8cSSatish Balay PetscFunctionReturn(0); 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay 500a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 501c3aae356SJed Brown ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 502e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 503a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 504a30f8f8cSSatish Balay 505d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5081e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 509a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5101e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 511a30f8f8cSSatish Balay PetscFunctionReturn(0); 512a30f8f8cSSatish Balay } 513a30f8f8cSSatish Balay 5144a2ae208SSatish Balay #undef __FUNCT__ 5154a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 516dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 517a30f8f8cSSatish Balay { 518a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 519a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5206849ba73SBarry Smith PetscErrorCode ierr; 52113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 522e44c0bd4SBarry Smith PetscInt *row,*col; 523ace3abfcSBarry Smith PetscBool other_disassembled; 52413f74950SBarry Smith PetscMPIInt n; 525ace3abfcSBarry Smith PetscBool r1,r2,r3; 526a30f8f8cSSatish Balay MatScalar *val; 527a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 528a30f8f8cSSatish Balay 52991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 530a30f8f8cSSatish Balay PetscFunctionBegin; 531a30f8f8cSSatish Balay 5324cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 533a30f8f8cSSatish Balay while (1) { 534a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 535a30f8f8cSSatish Balay if (!flg) break; 536a30f8f8cSSatish Balay 537a30f8f8cSSatish Balay for (i=0; i<n;) { 538a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 539a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 540a30f8f8cSSatish Balay if (j < n) ncols = j-i; 541a30f8f8cSSatish Balay else ncols = n-i; 542a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 543dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 544a30f8f8cSSatish Balay i = j; 545a30f8f8cSSatish Balay } 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 548a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 549a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 550a30f8f8cSSatish Balay restore the original flags */ 551a30f8f8cSSatish Balay r1 = baij->roworiented; 552a30f8f8cSSatish Balay r2 = a->roworiented; 55391c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 554a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 555a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 557a30f8f8cSSatish Balay while (1) { 558a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 559a30f8f8cSSatish Balay if (!flg) break; 560a30f8f8cSSatish Balay 561a30f8f8cSSatish Balay for (i=0; i<n;) { 562a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 563a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 564a30f8f8cSSatish Balay if (j < n) ncols = j-i; 565a30f8f8cSSatish Balay else ncols = n-i; 566dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 567a30f8f8cSSatish Balay i = j; 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 571a30f8f8cSSatish Balay baij->roworiented = r1; 572a30f8f8cSSatish Balay a->roworiented = r2; 57391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 574a30f8f8cSSatish Balay } 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 577a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 578a30f8f8cSSatish Balay 579a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 580a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 581a30f8f8cSSatish Balay /* 582a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 583a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 584a30f8f8cSSatish Balay */ 585a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 586c3aae356SJed Brown ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 587a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 588ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay } 591a30f8f8cSSatish Balay 592a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59340781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 594a30f8f8cSSatish Balay } 595cd6b891eSBarry Smith ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr); 596a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 597a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 598a30f8f8cSSatish Balay 59974ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 600a30f8f8cSSatish Balay baij->rowvalues = 0; 6015222a1afSHong Zhang 602a30f8f8cSSatish Balay PetscFunctionReturn(0); 603a30f8f8cSSatish Balay } 604a30f8f8cSSatish Balay 605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6064a2ae208SSatish Balay #undef __FUNCT__ 6074a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6086849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 609a30f8f8cSSatish Balay { 610a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 611dfbe8321SBarry Smith PetscErrorCode ierr; 612d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6131302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 614ace3abfcSBarry Smith PetscBool iascii,isdraw; 615b0a32e0cSBarry Smith PetscViewer sviewer; 616f3ef73ceSBarry Smith PetscViewerFormat format; 617a30f8f8cSSatish Balay 618a30f8f8cSSatish Balay PetscFunctionBegin; 619251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 620251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62132077d6dSBarry Smith if (iascii) { 622b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 623456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 624a30f8f8cSSatish Balay MatInfo info; 6257adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6277b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6287b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 629a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 630e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 631a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 632e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 633b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6347b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63507d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 636a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 637a30f8f8cSSatish Balay PetscFunctionReturn(0); 638fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 640a30f8f8cSSatish Balay PetscFunctionReturn(0); 641c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 642c1490034SHong Zhang PetscFunctionReturn(0); 643a30f8f8cSSatish Balay } 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay 646a30f8f8cSSatish Balay if (isdraw) { 647b0a32e0cSBarry Smith PetscDraw draw; 648ace3abfcSBarry Smith PetscBool isnull; 649b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 650b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 651a30f8f8cSSatish Balay } 652a30f8f8cSSatish Balay 653a30f8f8cSSatish Balay if (size == 1) { 6547adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 655a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 656a30f8f8cSSatish Balay } else { 657a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 658a30f8f8cSSatish Balay Mat A; 65965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 66065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 661d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 662a30f8f8cSSatish Balay MatScalar *a; 663a30f8f8cSSatish Balay 664f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6657adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 666a30f8f8cSSatish Balay if (!rank) { 667f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } else { 669f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 670a30f8f8cSSatish Balay } 671f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 672d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 6732b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 67452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay /* copy over the A part */ 67765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 678a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6791302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 680a30f8f8cSSatish Balay 681a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 682e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 683a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 684a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 685e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 686a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 687dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 688a30f8f8cSSatish Balay col++; a += bs; 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay } 692a30f8f8cSSatish Balay /* copy over the B part */ 69365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 695a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 696e9f7bc9eSHong Zhang 697e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 698a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 699a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 700a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 701a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 702799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 703a30f8f8cSSatish Balay col++; a += bs; 704a30f8f8cSSatish Balay } 705a30f8f8cSSatish Balay } 706a30f8f8cSSatish Balay } 707a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 708a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 709a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 710a30f8f8cSSatish Balay /* 711a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 712b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 713a30f8f8cSSatish Balay */ 714b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71565d70643SHong Zhang if (!rank) { 7167adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7177566de4bSShri Abhyankar /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/ 7187566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ); 719a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 720a30f8f8cSSatish Balay } 721b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7226bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay PetscFunctionReturn(0); 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay 7274a2ae208SSatish Balay #undef __FUNCT__ 7284a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 729dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 730a30f8f8cSSatish Balay { 731dfbe8321SBarry Smith PetscErrorCode ierr; 732ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay PetscFunctionBegin; 735251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 736251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 737251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 738251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73932077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 740a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 741a30f8f8cSSatish Balay } else { 742e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay PetscFunctionReturn(0); 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay 7474a2ae208SSatish Balay #undef __FUNCT__ 7484a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 749dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 750a30f8f8cSSatish Balay { 751a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 752dfbe8321SBarry Smith PetscErrorCode ierr; 753a30f8f8cSSatish Balay 754a30f8f8cSSatish Balay PetscFunctionBegin; 755a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 756d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 757a30f8f8cSSatish Balay #endif 758a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 759a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7606bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7616bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 762a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7636bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 764a30f8f8cSSatish Balay #else 76505b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 766a30f8f8cSSatish Balay #endif 76705b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7686bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7726bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7746bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7765755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77705b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7796bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7806bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7816bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 782ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78305b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 784a30f8f8cSSatish Balay #endif 78559ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78659ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 787899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 788bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 789901853e0SKris Buschelman 790dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 793901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 794901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 795aa5a9175SDahai Guo ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",PETSC_NULL);CHKERRQ(ierr); 796a30f8f8cSSatish Balay PetscFunctionReturn(0); 797a30f8f8cSSatish Balay } 798a30f8f8cSSatish Balay 7994a2ae208SSatish Balay #undef __FUNCT__ 800547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 801547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 802547795f9SHong Zhang { 803547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 804547795f9SHong Zhang PetscErrorCode ierr; 805547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 806547795f9SHong Zhang PetscScalar *x,*from; 807547795f9SHong Zhang 808547795f9SHong Zhang PetscFunctionBegin; 809547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 810e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 811547795f9SHong Zhang 812547795f9SHong Zhang /* diagonal part */ 813547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 814547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 815547795f9SHong Zhang 816547795f9SHong Zhang /* subdiagonal part */ 817547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 818547795f9SHong Zhang 819547795f9SHong Zhang /* copy x into the vec slvec0 */ 820547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 821547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 822547795f9SHong Zhang 823547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 824547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 826547795f9SHong Zhang 827547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 828547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 829547795f9SHong Zhang /* supperdiagonal part */ 830547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 831547795f9SHong Zhang PetscFunctionReturn(0); 832547795f9SHong Zhang } 833547795f9SHong Zhang 834547795f9SHong Zhang #undef __FUNCT__ 835a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 836dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 837a9d4b620SHong Zhang { 838a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 839dfbe8321SBarry Smith PetscErrorCode ierr; 840d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 841fa22f6d0SBarry Smith PetscScalar *x,*from; 842a9d4b620SHong Zhang 843a9d4b620SHong Zhang PetscFunctionBegin; 844a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 845e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 846a9d4b620SHong Zhang 847a9d4b620SHong Zhang /* diagonal part */ 848a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 849fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 850a9d4b620SHong Zhang 851a9d4b620SHong Zhang /* subdiagonal part */ 852a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 853fc165ae2SBarry Smith 854a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8551ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8561ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 857a9d4b620SHong Zhang 858fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 859fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8601ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 861fc165ae2SBarry Smith 862fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 863ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 864a9d4b620SHong Zhang /* supperdiagonal part */ 865a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 866a9d4b620SHong Zhang PetscFunctionReturn(0); 867a9d4b620SHong Zhang } 868a9d4b620SHong Zhang 869a9d4b620SHong Zhang #undef __FUNCT__ 87040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 871dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 872a30f8f8cSSatish Balay { 873a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 874dfbe8321SBarry Smith PetscErrorCode ierr; 8751302d50aSBarry Smith PetscInt nt; 876a30f8f8cSSatish Balay 877a30f8f8cSSatish Balay PetscFunctionBegin; 878a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 879e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 880e7e72b3dSBarry Smith 881a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 882e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88365d70643SHong Zhang 884ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 885b941877fSHong Zhang /* do diagonal part */ 886b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 887b941877fSHong Zhang /* do supperdiagonal part */ 888ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 889b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 890b941877fSHong Zhang /* do subdiagonal part */ 891b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 892ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 893ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89465d70643SHong Zhang 895a30f8f8cSSatish Balay PetscFunctionReturn(0); 896a30f8f8cSSatish Balay } 897a30f8f8cSSatish Balay 8984a2ae208SSatish Balay #undef __FUNCT__ 8994a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 900dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 901a30f8f8cSSatish Balay { 902de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 903dfbe8321SBarry Smith PetscErrorCode ierr; 904d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 905a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 906a9d4b620SHong Zhang 907a9d4b620SHong Zhang PetscFunctionBegin; 908a9d4b620SHong Zhang /* 9097adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9107adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 911a9d4b620SHong Zhang */ 912a9d4b620SHong Zhang /* diagonal part */ 913a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9142dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 915a9d4b620SHong Zhang 916a9d4b620SHong Zhang /* subdiagonal part */ 917a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 918a9d4b620SHong Zhang 919a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9201ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9211ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 922a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9231ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 924a9d4b620SHong Zhang 925ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9261ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 927ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 928a9d4b620SHong Zhang 929a9d4b620SHong Zhang /* supperdiagonal part */ 930a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 931a9d4b620SHong Zhang 932a9d4b620SHong Zhang PetscFunctionReturn(0); 933a9d4b620SHong Zhang } 934a9d4b620SHong Zhang 935a9d4b620SHong Zhang #undef __FUNCT__ 936a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 937dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 938a9d4b620SHong Zhang { 939a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 940dfbe8321SBarry Smith PetscErrorCode ierr; 941a30f8f8cSSatish Balay 942a30f8f8cSSatish Balay PetscFunctionBegin; 943ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 944b941877fSHong Zhang /* do diagonal part */ 945b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 946b941877fSHong Zhang /* do supperdiagonal part */ 947ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 948de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 949de8b6608SHong Zhang 950b941877fSHong Zhang /* do subdiagonal part */ 951a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 952ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 953ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 954aa482183SHong Zhang 955a30f8f8cSSatish Balay PetscFunctionReturn(0); 956a30f8f8cSSatish Balay } 957a30f8f8cSSatish Balay 958a30f8f8cSSatish Balay /* 959a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 960a30f8f8cSSatish Balay diagonal block 961a30f8f8cSSatish Balay */ 9624a2ae208SSatish Balay #undef __FUNCT__ 9634a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 964dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 965a30f8f8cSSatish Balay { 966a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 967dfbe8321SBarry Smith PetscErrorCode ierr; 968a30f8f8cSSatish Balay 969a30f8f8cSSatish Balay PetscFunctionBegin; 970e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 971a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 972a30f8f8cSSatish Balay PetscFunctionReturn(0); 973a30f8f8cSSatish Balay } 974a30f8f8cSSatish Balay 9754a2ae208SSatish Balay #undef __FUNCT__ 9764a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 977f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 978a30f8f8cSSatish Balay { 979a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 980dfbe8321SBarry Smith PetscErrorCode ierr; 981a30f8f8cSSatish Balay 982a30f8f8cSSatish Balay PetscFunctionBegin; 983f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 984f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 985a30f8f8cSSatish Balay PetscFunctionReturn(0); 986a30f8f8cSSatish Balay } 987a30f8f8cSSatish Balay 9884a2ae208SSatish Balay #undef __FUNCT__ 9894a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9901302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 991a30f8f8cSSatish Balay { 992d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 993d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 994d0d4cfc2SHong Zhang PetscErrorCode ierr; 995d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 996d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 997899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 998d0d4cfc2SHong Zhang 999a30f8f8cSSatish Balay PetscFunctionBegin; 1000e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1001d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1002d0d4cfc2SHong Zhang 1003d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1004d0d4cfc2SHong Zhang /* 1005d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1006d0d4cfc2SHong Zhang */ 1007d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1008d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1009d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1010d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1011d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1012d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1013d0d4cfc2SHong Zhang } 101474ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1015d0d4cfc2SHong Zhang } 1016d0d4cfc2SHong Zhang 1017e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1018d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1019d0d4cfc2SHong Zhang 1020d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1021d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1022d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1023d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1024d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1025d0d4cfc2SHong Zhang nztot = nzA + nzB; 1026d0d4cfc2SHong Zhang 1027d0d4cfc2SHong Zhang cmap = mat->garray; 1028d0d4cfc2SHong Zhang if (v || idx) { 1029d0d4cfc2SHong Zhang if (nztot) { 1030d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1031d0d4cfc2SHong Zhang PetscInt imark = -1; 1032d0d4cfc2SHong Zhang if (v) { 1033d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1034d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1035d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1036d0d4cfc2SHong Zhang else break; 1037d0d4cfc2SHong Zhang } 1038d0d4cfc2SHong Zhang imark = i; 1039d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1040d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1041d0d4cfc2SHong Zhang } 1042d0d4cfc2SHong Zhang if (idx) { 1043d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1044d0d4cfc2SHong Zhang if (imark > -1) { 1045d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1046d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1047d0d4cfc2SHong Zhang } 1048d0d4cfc2SHong Zhang } else { 1049d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1050d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1051d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1052d0d4cfc2SHong Zhang else break; 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang imark = i; 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1057d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1058d0d4cfc2SHong Zhang } 1059d0d4cfc2SHong Zhang } else { 1060d0d4cfc2SHong Zhang if (idx) *idx = 0; 1061d0d4cfc2SHong Zhang if (v) *v = 0; 1062d0d4cfc2SHong Zhang } 1063d0d4cfc2SHong Zhang } 1064d0d4cfc2SHong Zhang *nz = nztot; 1065d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1066d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1067a30f8f8cSSatish Balay PetscFunctionReturn(0); 1068a30f8f8cSSatish Balay } 1069a30f8f8cSSatish Balay 10704a2ae208SSatish Balay #undef __FUNCT__ 10714a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10721302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1073a30f8f8cSSatish Balay { 1074a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1075a30f8f8cSSatish Balay 1076a30f8f8cSSatish Balay PetscFunctionBegin; 1077e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1078a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1079a30f8f8cSSatish Balay PetscFunctionReturn(0); 1080a30f8f8cSSatish Balay } 1081a30f8f8cSSatish Balay 10824a2ae208SSatish Balay #undef __FUNCT__ 1083d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1084d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1085d0d4cfc2SHong Zhang { 1086d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1087d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1088d0d4cfc2SHong Zhang 1089d0d4cfc2SHong Zhang PetscFunctionBegin; 1090d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1091d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1092d0d4cfc2SHong Zhang } 1093d0d4cfc2SHong Zhang #undef __FUNCT__ 1094d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1095d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1096d0d4cfc2SHong Zhang { 1097d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1098d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1099d0d4cfc2SHong Zhang 1100d0d4cfc2SHong Zhang PetscFunctionBegin; 1101d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1102d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1103d0d4cfc2SHong Zhang } 1104d0d4cfc2SHong Zhang 1105d0d4cfc2SHong Zhang #undef __FUNCT__ 110699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110899cafbc1SBarry Smith { 110999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111099cafbc1SBarry Smith PetscErrorCode ierr; 111199cafbc1SBarry Smith 111299cafbc1SBarry Smith PetscFunctionBegin; 111399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111599cafbc1SBarry Smith PetscFunctionReturn(0); 111699cafbc1SBarry Smith } 111799cafbc1SBarry Smith 111899cafbc1SBarry Smith #undef __FUNCT__ 111999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112199cafbc1SBarry Smith { 112299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112399cafbc1SBarry Smith PetscErrorCode ierr; 112499cafbc1SBarry Smith 112599cafbc1SBarry Smith PetscFunctionBegin; 112699cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112799cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112899cafbc1SBarry Smith PetscFunctionReturn(0); 112999cafbc1SBarry Smith } 113099cafbc1SBarry Smith 113199cafbc1SBarry Smith #undef __FUNCT__ 11324a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1133dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1134a30f8f8cSSatish Balay { 1135a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1136dfbe8321SBarry Smith PetscErrorCode ierr; 1137a30f8f8cSSatish Balay 1138a30f8f8cSSatish Balay PetscFunctionBegin; 1139a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1140a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1141a30f8f8cSSatish Balay PetscFunctionReturn(0); 1142a30f8f8cSSatish Balay } 1143a30f8f8cSSatish Balay 11444a2ae208SSatish Balay #undef __FUNCT__ 11454a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1146dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1147a30f8f8cSSatish Balay { 1148a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1149a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1150dfbe8321SBarry Smith PetscErrorCode ierr; 1151a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1152a30f8f8cSSatish Balay 1153a30f8f8cSSatish Balay PetscFunctionBegin; 1154d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1155a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1156a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1157a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1158a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1159a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1160a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1161a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1162a30f8f8cSSatish Balay info->nz_used = isend[0]; 1163a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1164a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1165a30f8f8cSSatish Balay info->memory = isend[3]; 1166a30f8f8cSSatish Balay info->mallocs = isend[4]; 1167a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1168d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1169a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1170a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1171a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1172a30f8f8cSSatish Balay info->memory = irecv[3]; 1173a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1174a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1175d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1176a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1177a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1178a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1179a30f8f8cSSatish Balay info->memory = irecv[3]; 1180a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1181a30f8f8cSSatish Balay } else { 1182e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1183a30f8f8cSSatish Balay } 1184a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1185a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1186a30f8f8cSSatish Balay info->factor_mallocs = 0; 1187a30f8f8cSSatish Balay PetscFunctionReturn(0); 1188a30f8f8cSSatish Balay } 1189a30f8f8cSSatish Balay 11904a2ae208SSatish Balay #undef __FUNCT__ 11914a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1192ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1193a30f8f8cSSatish Balay { 1194a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1195d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1196dfbe8321SBarry Smith PetscErrorCode ierr; 1197a30f8f8cSSatish Balay 1198a30f8f8cSSatish Balay PetscFunctionBegin; 1199e98b92d7SKris Buschelman switch (op) { 1200512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1201e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1203a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1204e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12054e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12064e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1207e98b92d7SKris Buschelman break; 1208e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12094e0d8c25SBarry Smith a->roworiented = flg; 12104e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12114e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1212e98b92d7SKris Buschelman break; 12134e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1214290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1215e98b92d7SKris Buschelman break; 1216e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12174e0d8c25SBarry Smith a->donotstash = flg; 1218e98b92d7SKris Buschelman break; 1219e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12204e0d8c25SBarry Smith a->ht_flag = flg; 1221e98b92d7SKris Buschelman break; 12229a4540c5SBarry Smith case MAT_HERMITIAN: 1223e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1224eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1225547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1226eeffb40dSHong Zhang break; 1227ffa07934SHong Zhang case MAT_SPD: 1228ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1229ffa07934SHong Zhang A->spd = flg; 1230ffa07934SHong Zhang if (flg) { 1231ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1232ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1233ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1234ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1235ffa07934SHong Zhang } 1236ffa07934SHong Zhang break; 123777e54ba9SKris Buschelman case MAT_SYMMETRIC: 1238eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1239eeffb40dSHong Zhang break; 124077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1241eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1242eeffb40dSHong Zhang break; 12439a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1244e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1245290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124677e54ba9SKris Buschelman break; 1247d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12484e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1249d0d4cfc2SHong Zhang break; 1250d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12514e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1252d0d4cfc2SHong Zhang break; 1253d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12544e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1255d0d4cfc2SHong Zhang break; 1256e98b92d7SKris Buschelman default: 1257e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay PetscFunctionReturn(0); 1260a30f8f8cSSatish Balay } 1261a30f8f8cSSatish Balay 12624a2ae208SSatish Balay #undef __FUNCT__ 12638115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1264fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1265a30f8f8cSSatish Balay { 1266dfbe8321SBarry Smith PetscErrorCode ierr; 1267a30f8f8cSSatish Balay PetscFunctionBegin; 1268815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1269999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1270fc4dec0aSBarry Smith } 12718115998fSBarry Smith PetscFunctionReturn(0); 1272a30f8f8cSSatish Balay } 1273a30f8f8cSSatish Balay 12744a2ae208SSatish Balay #undef __FUNCT__ 12754a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1276dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1277a30f8f8cSSatish Balay { 1278a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1279a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1280dfbe8321SBarry Smith PetscErrorCode ierr; 12815e90f9d9SHong Zhang PetscInt nv,m,n; 1282ace3abfcSBarry Smith PetscBool flg; 1283a30f8f8cSSatish Balay 1284a30f8f8cSSatish Balay PetscFunctionBegin; 1285a30f8f8cSSatish Balay if (ll != rr) { 1286b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1287e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1288a30f8f8cSSatish Balay } 1289b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1290b3bf805bSHong Zhang 12915e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1292e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1293b3bf805bSHong Zhang 12945e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1295e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12965e90f9d9SHong Zhang 1297ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12985e90f9d9SHong Zhang 12995e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1300a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13015e90f9d9SHong Zhang 13025e90f9d9SHong Zhang /* scale the diagonal part */ 1303a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1304a30f8f8cSSatish Balay 13055e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1306ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1308a30f8f8cSSatish Balay PetscFunctionReturn(0); 1309a30f8f8cSSatish Balay } 1310a30f8f8cSSatish Balay 13114a2ae208SSatish Balay #undef __FUNCT__ 13124a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1313dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1314a30f8f8cSSatish Balay { 1315f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1316dfbe8321SBarry Smith PetscErrorCode ierr; 1317a30f8f8cSSatish Balay 1318a30f8f8cSSatish Balay PetscFunctionBegin; 1319a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1320a30f8f8cSSatish Balay PetscFunctionReturn(0); 1321a30f8f8cSSatish Balay } 1322a30f8f8cSSatish Balay 13236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1324a30f8f8cSSatish Balay 13254a2ae208SSatish Balay #undef __FUNCT__ 13264a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1327ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1328a30f8f8cSSatish Balay { 1329a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1330a30f8f8cSSatish Balay Mat a,b,c,d; 1331ace3abfcSBarry Smith PetscBool flg; 1332dfbe8321SBarry Smith PetscErrorCode ierr; 1333a30f8f8cSSatish Balay 1334a30f8f8cSSatish Balay PetscFunctionBegin; 1335a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1336a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1337a30f8f8cSSatish Balay 1338a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1339abc0a331SBarry Smith if (flg) { 1340a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay } 1342c3aae356SJed Brown ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1343a30f8f8cSSatish Balay PetscFunctionReturn(0); 1344a30f8f8cSSatish Balay } 1345a30f8f8cSSatish Balay 13464a2ae208SSatish Balay #undef __FUNCT__ 13473c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13483c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13493c896bc6SHong Zhang { 13503c896bc6SHong Zhang PetscErrorCode ierr; 13513c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13523c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13533c896bc6SHong Zhang 13543c896bc6SHong Zhang PetscFunctionBegin; 13553c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13563c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1357d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13583c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1359d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13603c896bc6SHong Zhang } else { 13613c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13623c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13633c896bc6SHong Zhang } 13643c896bc6SHong Zhang PetscFunctionReturn(0); 13653c896bc6SHong Zhang } 13663c896bc6SHong Zhang 13673c896bc6SHong Zhang #undef __FUNCT__ 13684994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13694994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1370273d9f13SBarry Smith { 1371dfbe8321SBarry Smith PetscErrorCode ierr; 1372273d9f13SBarry Smith 1373273d9f13SBarry Smith PetscFunctionBegin; 1374535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1375273d9f13SBarry Smith PetscFunctionReturn(0); 1376273d9f13SBarry Smith } 1377a5e6ed63SBarry Smith 13784fe895cdSHong Zhang #undef __FUNCT__ 13794fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13804fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13814fe895cdSHong Zhang { 13824fe895cdSHong Zhang PetscErrorCode ierr; 13834fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13844fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13854fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13864fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13874fe895cdSHong Zhang 13884fe895cdSHong Zhang PetscFunctionBegin; 13894fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13904fe895cdSHong Zhang PetscScalar alpha = a; 13914fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13924fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13930805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13944fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13954fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13964fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13970805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13984fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13994fe895cdSHong Zhang } else { 1400d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14014fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1402d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14034fe895cdSHong Zhang } 14044fe895cdSHong Zhang PetscFunctionReturn(0); 14054fe895cdSHong Zhang } 14064fe895cdSHong Zhang 1407a5e6ed63SBarry Smith #undef __FUNCT__ 1408a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14091302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1410a5e6ed63SBarry Smith { 14116849ba73SBarry Smith PetscErrorCode ierr; 14121302d50aSBarry Smith PetscInt i; 1413ace3abfcSBarry Smith PetscBool flg; 1414a5e6ed63SBarry Smith 14156849ba73SBarry Smith PetscFunctionBegin; 1416a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1417a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1418e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1419a5e6ed63SBarry Smith } 1420a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1421a5e6ed63SBarry Smith PetscFunctionReturn(0); 1422a5e6ed63SBarry Smith } 1423a5e6ed63SBarry Smith 1424a5e6ed63SBarry Smith 1425a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1426a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1427a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1428a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1429a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1430a9d4b620SHong Zhang MatMult_MPISBAIJ, 143197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1432431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1433431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1434a30f8f8cSSatish Balay 0, 1435a30f8f8cSSatish Balay 0, 1436a30f8f8cSSatish Balay 0, 143797304618SKris Buschelman /*10*/ 0, 1438a30f8f8cSSatish Balay 0, 1439a30f8f8cSSatish Balay 0, 144041f059aeSBarry Smith MatSOR_MPISBAIJ, 1441a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 144297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1443a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1444a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1445a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1446a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 144797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1448a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1449a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1450a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1451d519adbfSMatthew Knepley /*24*/ 0, 1452a30f8f8cSSatish Balay 0, 1453a30f8f8cSSatish Balay 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 14564994cf47SJed Brown /*29*/ MatSetUp_MPISBAIJ, 1457b5df2d14SHong Zhang 0, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 1464a30f8f8cSSatish Balay 0, 1465a30f8f8cSSatish Balay 0, 1466d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1467a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1468d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1469a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14703c896bc6SHong Zhang MatCopy_MPISBAIJ, 1471d519adbfSMatthew Knepley /*44*/ 0, 1472a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476f73d5cc4SBarry Smith /*49*/ 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481d519adbfSMatthew Knepley /*54*/ 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1486d519adbfSMatthew Knepley /*59*/ 0, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay 0, 1489357abbc8SBarry Smith 0, 149024d5174aSHong Zhang 0, 1491d519adbfSMatthew Knepley /*64*/ 0, 149224d5174aSHong Zhang 0, 149324d5174aSHong Zhang 0, 149424d5174aSHong Zhang 0, 149524d5174aSHong Zhang 0, 1496d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 149724d5174aSHong Zhang 0, 149897304618SKris Buschelman 0, 149997304618SKris Buschelman 0, 150097304618SKris Buschelman 0, 1501d519adbfSMatthew Knepley /*74*/ 0, 150297304618SKris Buschelman 0, 150397304618SKris Buschelman 0, 150497304618SKris Buschelman 0, 150597304618SKris Buschelman 0, 1506d519adbfSMatthew Knepley /*79*/ 0, 150797304618SKris Buschelman 0, 150897304618SKris Buschelman 0, 150997304618SKris Buschelman 0, 15105bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1511d519adbfSMatthew Knepley /*84*/ 0, 1512865e5f61SKris Buschelman 0, 1513865e5f61SKris Buschelman 0, 1514865e5f61SKris Buschelman 0, 1515865e5f61SKris Buschelman 0, 1516d519adbfSMatthew Knepley /*89*/ 0, 1517865e5f61SKris Buschelman 0, 1518865e5f61SKris Buschelman 0, 1519865e5f61SKris Buschelman 0, 1520865e5f61SKris Buschelman 0, 1521d519adbfSMatthew Knepley /*94*/ 0, 1522865e5f61SKris Buschelman 0, 1523865e5f61SKris Buschelman 0, 152499cafbc1SBarry Smith 0, 152599cafbc1SBarry Smith 0, 1526d519adbfSMatthew Knepley /*99*/ 0, 152799cafbc1SBarry Smith 0, 152899cafbc1SBarry Smith 0, 152999cafbc1SBarry Smith 0, 153099cafbc1SBarry Smith 0, 1531d519adbfSMatthew Knepley /*104*/0, 153299cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1533d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1534d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 153595936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 153695936485SShri Abhyankar /*109*/0, 153795936485SShri Abhyankar 0, 153895936485SShri Abhyankar 0, 153995936485SShri Abhyankar 0, 154095936485SShri Abhyankar 0, 154195936485SShri Abhyankar /*114*/0, 154295936485SShri Abhyankar 0, 154395936485SShri Abhyankar 0, 154495936485SShri Abhyankar 0, 154595936485SShri Abhyankar 0, 154695936485SShri Abhyankar /*119*/0, 154795936485SShri Abhyankar 0, 154895936485SShri Abhyankar 0, 15495bba2384SShri Abhyankar 0 155099cafbc1SBarry Smith }; 1551a30f8f8cSSatish Balay 1552a30f8f8cSSatish Balay 1553a30f8f8cSSatish Balay EXTERN_C_BEGIN 15544a2ae208SSatish Balay #undef __FUNCT__ 15554a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 155611bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1557a30f8f8cSSatish Balay { 1558a30f8f8cSSatish Balay PetscFunctionBegin; 1559a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1560a30f8f8cSSatish Balay PetscFunctionReturn(0); 1561a30f8f8cSSatish Balay } 1562a30f8f8cSSatish Balay EXTERN_C_END 1563a30f8f8cSSatish Balay 1564273d9f13SBarry Smith EXTERN_C_BEGIN 15654a2ae208SSatish Balay #undef __FUNCT__ 1566a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 15677087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1568a23d5eceSKris Buschelman { 1569a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1570dfbe8321SBarry Smith PetscErrorCode ierr; 1571535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1572a23d5eceSKris Buschelman 1573a23d5eceSKris Buschelman PetscFunctionBegin; 1574a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1575a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1576e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1577e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1578899cda47SBarry Smith 1579535b19f3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1580535b19f3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 158126283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 158226283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1583e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1584899cda47SBarry Smith 1585a23d5eceSKris Buschelman if (d_nnz) { 1586d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1587e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1588a23d5eceSKris Buschelman } 1589a23d5eceSKris Buschelman } 1590a23d5eceSKris Buschelman if (o_nnz) { 1591d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1592e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1593a23d5eceSKris Buschelman } 1594a23d5eceSKris Buschelman } 1595a23d5eceSKris Buschelman 1596a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1597d0f46423SBarry Smith mbs = B->rmap->n/bs; 1598d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1599c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1600a23d5eceSKris Buschelman 1601d0f46423SBarry Smith B->rmap->bs = bs; 1602a23d5eceSKris Buschelman b->bs2 = bs*bs; 1603a23d5eceSKris Buschelman b->mbs = mbs; 1604a23d5eceSKris Buschelman b->nbs = mbs; 1605a23d5eceSKris Buschelman b->Mbs = Mbs; 1606a23d5eceSKris Buschelman b->Nbs = Mbs; 1607a23d5eceSKris Buschelman 1608a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1609d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1610a23d5eceSKris Buschelman } 1611d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1612d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1613a23d5eceSKris Buschelman 1614d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1615d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1616a23d5eceSKris Buschelman 1617526dfc15SBarry Smith if (!B->preallocated) { 1618f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1619d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16209c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 162152e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1622f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1623d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16244aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 162552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 162615bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1627526dfc15SBarry Smith } 1628a23d5eceSKris Buschelman 1629526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1630526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1631526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1632a23d5eceSKris Buschelman PetscFunctionReturn(0); 1633a23d5eceSKris Buschelman } 1634a23d5eceSKris Buschelman EXTERN_C_END 1635a23d5eceSKris Buschelman 16365c9eb25fSBarry Smith EXTERN_C_BEGIN 1637dfb205c3SBarry Smith #undef __FUNCT__ 1638dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1639dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1640dfb205c3SBarry Smith { 1641dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1642dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1643dfb205c3SBarry Smith const PetscInt *JJ=0; 1644dfb205c3SBarry Smith PetscScalar *values=0; 1645dfb205c3SBarry Smith PetscErrorCode ierr; 1646dfb205c3SBarry Smith 1647dfb205c3SBarry Smith PetscFunctionBegin; 1648dfb205c3SBarry Smith 1649dfb205c3SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1650dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1651dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1652dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1653dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1654e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1655dfb205c3SBarry Smith m = B->rmap->n/bs; 1656dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1657dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1658dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1659dfb205c3SBarry Smith 1660dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1661dfb205c3SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 1662dfb205c3SBarry Smith for (i=0; i<m; i++) { 1663dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1664dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1665dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1666dfb205c3SBarry Smith JJ = jj + ii[i]; 1667dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1668dfb205c3SBarry Smith if (*JJ >= cstart) break; 1669dfb205c3SBarry Smith JJ++; 1670dfb205c3SBarry Smith } 1671dfb205c3SBarry Smith d = 0; 1672dfb205c3SBarry Smith for (; j<nz; j++) { 1673dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1674dfb205c3SBarry Smith d++; 1675dfb205c3SBarry Smith } 1676dfb205c3SBarry Smith d_nnz[i] = d; 1677dfb205c3SBarry Smith o_nnz[i] = nz - d; 1678dfb205c3SBarry Smith } 1679dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1680dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1681dfb205c3SBarry Smith 1682dfb205c3SBarry Smith values = (PetscScalar*)V; 1683dfb205c3SBarry Smith if (!values) { 1684dfb205c3SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 1685dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1686dfb205c3SBarry Smith } 1687dfb205c3SBarry Smith for (i=0; i<m; i++) { 1688dfb205c3SBarry Smith PetscInt row = i + rstart; 1689dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1690dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1691dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1692dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1693dfb205c3SBarry Smith } 1694dfb205c3SBarry Smith 1695dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1696dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1697dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16987827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1699dfb205c3SBarry Smith PetscFunctionReturn(0); 1700dfb205c3SBarry Smith } 1701dfb205c3SBarry Smith EXTERN_C_END 1702dfb205c3SBarry Smith 1703dfb205c3SBarry Smith EXTERN_C_BEGIN 1704611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 17057087cfbeSBarry Smith extern PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1706611f576cSBarry Smith #endif 1707b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1708b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1709b5e56a35SBarry Smith #endif 17105c9eb25fSBarry Smith EXTERN_C_END 17115c9eb25fSBarry Smith 17120bad9183SKris Buschelman /*MC 1713fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1714828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1715828413b8SBarry Smith the matrix is stored. 1716828413b8SBarry Smith 1717828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1718828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17190bad9183SKris Buschelman 17200bad9183SKris Buschelman Options Database Keys: 17210bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17220bad9183SKris Buschelman 17230bad9183SKris Buschelman Level: beginner 17240bad9183SKris Buschelman 17250bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17260bad9183SKris Buschelman M*/ 17270bad9183SKris Buschelman 1728a23d5eceSKris Buschelman EXTERN_C_BEGIN 172919fd82e9SBarry Smith extern PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1730aa5a9175SDahai Guo EXTERN_C_END 1731aa5a9175SDahai Guo 1732aa5a9175SDahai Guo EXTERN_C_BEGIN 1733a23d5eceSKris Buschelman #undef __FUNCT__ 17344a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17357087cfbeSBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1736b5df2d14SHong Zhang { 1737b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1738dfbe8321SBarry Smith PetscErrorCode ierr; 1739ace3abfcSBarry Smith PetscBool flg; 1740b5df2d14SHong Zhang 1741b5df2d14SHong Zhang PetscFunctionBegin; 1742b5df2d14SHong Zhang 174338f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1744b0a32e0cSBarry Smith B->data = (void*)b; 1745b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1746b5df2d14SHong Zhang 1747b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1748b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1749b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1750b5df2d14SHong Zhang 1751b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 17527adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 17537adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1754b5df2d14SHong Zhang 1755b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1756899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1757b5df2d14SHong Zhang 1758b5df2d14SHong Zhang /* build cache for off array entries formed */ 17597adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1760b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1761b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1762b5df2d14SHong Zhang b->garray = PETSC_NULL; 1763b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1764b5df2d14SHong Zhang 1765b5df2d14SHong Zhang /* stuff used in block assembly */ 1766b5df2d14SHong Zhang b->barray = 0; 1767b5df2d14SHong Zhang 1768b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1769b5df2d14SHong Zhang b->lvec = 0; 1770b5df2d14SHong Zhang b->Mvctx = 0; 177140781036SHong Zhang b->slvec0 = 0; 177240781036SHong Zhang b->slvec0b = 0; 177340781036SHong Zhang b->slvec1 = 0; 177440781036SHong Zhang b->slvec1a = 0; 177540781036SHong Zhang b->slvec1b = 0; 177640781036SHong Zhang b->sMvctx = 0; 1777b5df2d14SHong Zhang 1778b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1779b5df2d14SHong Zhang b->rowindices = 0; 1780b5df2d14SHong Zhang b->rowvalues = 0; 1781b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1782b5df2d14SHong Zhang 1783b5df2d14SHong Zhang /* hash table stuff */ 1784b5df2d14SHong Zhang b->ht = 0; 1785b5df2d14SHong Zhang b->hd = 0; 1786b5df2d14SHong Zhang b->ht_size = 0; 1787b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1788b5df2d14SHong Zhang b->ht_fact = 0; 1789b5df2d14SHong Zhang b->ht_total_ct = 0; 1790b5df2d14SHong Zhang b->ht_insert_ct = 0; 1791b5df2d14SHong Zhang 17927a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 17937a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 17947a868f3eSHong Zhang 179559ffdab8SBarry Smith b->in_loc = 0; 179659ffdab8SBarry Smith b->v_loc = 0; 179759ffdab8SBarry Smith b->n_loc = 0; 17987adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 1799acfcf0e5SJed Brown ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1800b5df2d14SHong Zhang if (flg) { 1801f6275e2eSBarry Smith PetscReal fact = 1.39; 18024e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 18038c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1804b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1805b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18061e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1807b5df2d14SHong Zhang } 18088c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18098c07d4e3SBarry Smith 1810b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1811ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1812b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1813b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1814b5e56a35SBarry Smith #endif 1815611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1816ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 1817bccb9932SShri Abhyankar "MatGetFactor_sbaij_mumps", 1818bccb9932SShri Abhyankar MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1819611f576cSBarry Smith #endif 1820b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1821b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1822b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1823b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1824b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1825b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1826b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1827b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1828b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1829a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1830a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1831a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1832dfb205c3SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C", 1833dfb205c3SBarry Smith "MatMPISBAIJSetPreallocationCSR_MPISBAIJ", 1834dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1835aa5a9175SDahai Guo ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C", 1836aa5a9175SDahai Guo "MatConvert_MPISBAIJ_MPISBSTRM", 1837aa5a9175SDahai Guo MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1838aa5a9175SDahai Guo 183923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 184023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 184123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 184223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 184317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1844b5df2d14SHong Zhang PetscFunctionReturn(0); 1845b5df2d14SHong Zhang } 1846273d9f13SBarry Smith EXTERN_C_END 1847b5df2d14SHong Zhang 1848209238afSKris Buschelman /*MC 1849002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1850209238afSKris Buschelman 1851209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1852209238afSKris Buschelman and MATMPISBAIJ otherwise. 1853209238afSKris Buschelman 1854209238afSKris Buschelman Options Database Keys: 1855209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1856209238afSKris Buschelman 1857209238afSKris Buschelman Level: beginner 1858209238afSKris Buschelman 1859209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1860209238afSKris Buschelman M*/ 1861209238afSKris Buschelman 18624a2ae208SSatish Balay #undef __FUNCT__ 18634a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1864b5df2d14SHong Zhang /*@C 1865b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1866b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1867b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1868b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1869b5df2d14SHong Zhang 1870b5df2d14SHong Zhang Collective on Mat 1871b5df2d14SHong Zhang 1872b5df2d14SHong Zhang Input Parameters: 1873b5df2d14SHong Zhang + A - the matrix 1874b5df2d14SHong Zhang . bs - size of blockk 1875b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1876b5df2d14SHong Zhang submatrix (same for all local rows) 1877b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18786d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 187995742e49SBarry Smith (possibly different for each block row) or PETSC_NULL. If you plan to factor the matrix you must leave room 188095742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1881b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1882b5df2d14SHong Zhang submatrix (same for all local rows). 1883b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1884c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 1885c2fc9fa9SBarry Smith (possibly different for each block row) or PETSC_NULL. 1886b5df2d14SHong Zhang 1887b5df2d14SHong Zhang 1888b5df2d14SHong Zhang Options Database Keys: 1889b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1890b5df2d14SHong Zhang block calculations (much slower) 1891b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1892b5df2d14SHong Zhang 1893b5df2d14SHong Zhang Notes: 1894b5df2d14SHong Zhang 1895b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1896b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1897b5df2d14SHong Zhang 189849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 189949a6f317SBarry Smith 1900b5df2d14SHong Zhang Storage Information: 1901b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1902b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1903b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1904b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1905b5df2d14SHong Zhang 1906b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1907b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1908b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1909b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1910b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1911b5df2d14SHong Zhang 1912aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1913aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1914aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1915aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1916aa95bbe8SBarry Smith 1917b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1918b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1919b5df2d14SHong Zhang 1920b5df2d14SHong Zhang .vb 1921b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1922b5df2d14SHong Zhang ------------------- 1923c2fc9fa9SBarry Smith row 3 | . . . d d d o o o o o o 1924c2fc9fa9SBarry Smith row 4 | . . . d d d o o o o o o 1925c2fc9fa9SBarry Smith row 5 | . . . d d d o o o o o o 1926b5df2d14SHong Zhang ------------------- 1927b5df2d14SHong Zhang .ve 1928b5df2d14SHong Zhang 1929b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1930b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19316d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19326d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1933b5df2d14SHong Zhang 19346d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19356d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1936c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1937c2fc9fa9SBarry Smith 1938b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1939b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1940b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1941b5df2d14SHong Zhang matrices. 1942b5df2d14SHong Zhang 1943b5df2d14SHong Zhang Level: intermediate 1944b5df2d14SHong Zhang 1945b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1946b5df2d14SHong Zhang 1947ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1948b5df2d14SHong Zhang @*/ 19497087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1950b5df2d14SHong Zhang { 19514ac538c5SBarry Smith PetscErrorCode ierr; 1952b5df2d14SHong Zhang 1953b5df2d14SHong Zhang PetscFunctionBegin; 19546ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19556ba663aaSJed Brown PetscValidType(B,1); 19566ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19574ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1958b5df2d14SHong Zhang PetscFunctionReturn(0); 1959b5df2d14SHong Zhang } 1960b5df2d14SHong Zhang 19614a2ae208SSatish Balay #undef __FUNCT__ 196269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1963a30f8f8cSSatish Balay /*@C 196469b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1965a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1966a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1967a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1968a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1969a30f8f8cSSatish Balay 1970a30f8f8cSSatish Balay Collective on MPI_Comm 1971a30f8f8cSSatish Balay 1972a30f8f8cSSatish Balay Input Parameters: 1973a30f8f8cSSatish Balay + comm - MPI communicator 1974a30f8f8cSSatish Balay . bs - size of blockk 1975a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1976a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1977a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1978a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1979a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1980a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1981a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1982a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1983a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1984a30f8f8cSSatish Balay submatrix (same for all local rows) 1985a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19866d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19876d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 198895742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 198995742e49SBarry Smith set its value even if it is zero. 1990a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1991a30f8f8cSSatish Balay submatrix (same for all local rows). 1992a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1993a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1994a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1995a30f8f8cSSatish Balay 1996a30f8f8cSSatish Balay Output Parameter: 1997a30f8f8cSSatish Balay . A - the matrix 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay Options Database Keys: 2000a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2001a30f8f8cSSatish Balay block calculations (much slower) 2002a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2003a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2004a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2005a30f8f8cSSatish Balay 2006175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2007ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2008175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2009175b88e8SBarry Smith 2010a30f8f8cSSatish Balay Notes: 2011d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20126d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2013d1be2dadSMatthew Knepley 2014a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2015a30f8f8cSSatish Balay (possibly both). 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2018a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2019a30f8f8cSSatish Balay 202049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 202149a6f317SBarry Smith 2022a30f8f8cSSatish Balay Storage Information: 2023a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2024a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2025a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2026a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2027a30f8f8cSSatish Balay 2028a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2029a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 2030a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2031a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2032a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2033a30f8f8cSSatish Balay 2034a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2035a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2036a30f8f8cSSatish Balay 2037a30f8f8cSSatish Balay .vb 2038a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2039a30f8f8cSSatish Balay ------------------- 2040c2fc9fa9SBarry Smith row 3 | . . . d d d o o o o o o 2041c2fc9fa9SBarry Smith row 4 | . . . d d d o o o o o o 2042c2fc9fa9SBarry Smith row 5 | . . . d d d o o o o o o 2043a30f8f8cSSatish Balay ------------------- 2044a30f8f8cSSatish Balay .ve 2045a30f8f8cSSatish Balay 2046a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2047a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20486d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20496d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2050a30f8f8cSSatish Balay 20516d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20526d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2053a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2054a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2055a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2056a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2057a30f8f8cSSatish Balay matrices. 2058a30f8f8cSSatish Balay 2059a30f8f8cSSatish Balay Level: intermediate 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2062a30f8f8cSSatish Balay 206369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2064a30f8f8cSSatish Balay @*/ 2065a30f8f8cSSatish Balay 206669b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2067a30f8f8cSSatish Balay { 20686849ba73SBarry Smith PetscErrorCode ierr; 20691302d50aSBarry Smith PetscMPIInt size; 2070a30f8f8cSSatish Balay 2071a30f8f8cSSatish Balay PetscFunctionBegin; 2072f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2073f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2074273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2075273d9f13SBarry Smith if (size > 1) { 2076b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2077b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2078273d9f13SBarry Smith } else { 2079273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2080273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2081273d9f13SBarry Smith } 2082a30f8f8cSSatish Balay PetscFunctionReturn(0); 2083a30f8f8cSSatish Balay } 2084a30f8f8cSSatish Balay 2085a30f8f8cSSatish Balay 20864a2ae208SSatish Balay #undef __FUNCT__ 20874a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20886849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2089a30f8f8cSSatish Balay { 2090a30f8f8cSSatish Balay Mat mat; 2091a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2092dfbe8321SBarry Smith PetscErrorCode ierr; 2093d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2094387bc808SHong Zhang PetscScalar *array; 2095a30f8f8cSSatish Balay 2096a30f8f8cSSatish Balay PetscFunctionBegin; 2097a30f8f8cSSatish Balay *newmat = 0; 20987adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2099d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21007adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21011d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 21021e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 21031e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2104e1b6402fSHong Zhang 2105d5f3da31SBarry Smith mat->factortype = matin->factortype; 2106273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 210782327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21087fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21097fff6886SHong Zhang 2110b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2111a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2112a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2113a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2114a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2115a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2116a30f8f8cSSatish Balay 2117899cda47SBarry Smith 2118a30f8f8cSSatish Balay a->size = oldmat->size; 2119a30f8f8cSSatish Balay a->rank = oldmat->rank; 2120a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2121a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2122a30f8f8cSSatish Balay a->rowindices = 0; 2123a30f8f8cSSatish Balay a->rowvalues = 0; 2124a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2125a30f8f8cSSatish Balay a->barray = 0; 2126899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2127899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2128899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2129899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2130a30f8f8cSSatish Balay 2131a30f8f8cSSatish Balay /* hash table stuff */ 2132a30f8f8cSSatish Balay a->ht = 0; 2133a30f8f8cSSatish Balay a->hd = 0; 2134a30f8f8cSSatish Balay a->ht_size = 0; 2135a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2136a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2137a30f8f8cSSatish Balay a->ht_total_ct = 0; 2138a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2139a30f8f8cSSatish Balay 2140899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2141a30f8f8cSSatish Balay if (oldmat->colmap) { 2142a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2143a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2144a30f8f8cSSatish Balay #else 21451302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 214652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21471302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2148a30f8f8cSSatish Balay #endif 2149a30f8f8cSSatish Balay } else a->colmap = 0; 2150387bc808SHong Zhang 2151a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21521302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 215352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21541302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2155a30f8f8cSSatish Balay } else a->garray = 0; 2156a30f8f8cSSatish Balay 2157533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2158a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 215952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 216152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 216282327fa8SHong Zhang 216382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 216452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 216582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 216652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2167387bc808SHong Zhang 2168387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21691ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2170778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2171778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21721ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21731ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2174778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21751ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 217652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 217752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 217852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 217952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 218052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2181387bc808SHong Zhang 2182387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2183387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2184387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 218552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 218682327fa8SHong Zhang 2187a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 218852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 219052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2191140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay *newmat = mat; 2193a30f8f8cSSatish Balay PetscFunctionReturn(0); 2194a30f8f8cSSatish Balay } 2195a30f8f8cSSatish Balay 21964a2ae208SSatish Balay #undef __FUNCT__ 21975bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2198112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 219995936485SShri Abhyankar { 220095936485SShri Abhyankar PetscErrorCode ierr; 220195936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 220295936485SShri Abhyankar PetscScalar *vals,*buf; 220395936485SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 220495936485SShri Abhyankar MPI_Status status; 2205adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2206adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 220795936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 220895936485SShri Abhyankar PetscInt bs=1,Mbs,mbs,extra_rows; 220995936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 221095936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 221195936485SShri Abhyankar int fd; 221295936485SShri Abhyankar 221395936485SShri Abhyankar PetscFunctionBegin; 221495936485SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 221595936485SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 221695936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 221795936485SShri Abhyankar 221895936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 221995936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 222095936485SShri Abhyankar if (!rank) { 222195936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 222295936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 222395936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 222495936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 222595936485SShri Abhyankar } 222695936485SShri Abhyankar 222795936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 222895936485SShri Abhyankar 222995936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 223095936485SShri Abhyankar M = header[1]; N = header[2]; 223195936485SShri Abhyankar 223295936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 223395936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 223495936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 223595936485SShri Abhyankar 223695936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 223795936485SShri Abhyankar if (sizesset) { 223895936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 223995936485SShri Abhyankar } 2240abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2241abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 224295936485SShri Abhyankar 224395936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 224495936485SShri Abhyankar 224595936485SShri Abhyankar /* 224695936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 224795936485SShri Abhyankar divisible by the blocksize 224895936485SShri Abhyankar */ 224995936485SShri Abhyankar Mbs = M/bs; 225095936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 225195936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 225295936485SShri Abhyankar else Mbs++; 225395936485SShri Abhyankar if (extra_rows &&!rank) { 225495936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 225595936485SShri Abhyankar } 225695936485SShri Abhyankar 225795936485SShri Abhyankar /* determine ownership of all rows */ 225895936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 225995936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 226095936485SShri Abhyankar m = mbs*bs; 226195936485SShri Abhyankar } else { /* User Set */ 226295936485SShri Abhyankar m = newmat->rmap->n; 226395936485SShri Abhyankar mbs = m/bs; 226495936485SShri Abhyankar } 226595936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 226695936485SShri Abhyankar mmbs = PetscMPIIntCast(mbs); 226795936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 226895936485SShri Abhyankar rowners[0] = 0; 226995936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 227095936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 227195936485SShri Abhyankar rstart = rowners[rank]; 227295936485SShri Abhyankar rend = rowners[rank+1]; 227395936485SShri Abhyankar 227495936485SShri Abhyankar /* distribute row lengths to all processors */ 2275adcec1e5SJed Brown ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 227695936485SShri Abhyankar if (!rank) { 227795936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 227895936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 227995936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 228095936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 228195936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 228295936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 228395936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 228495936485SShri Abhyankar } else { 228595936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 228695936485SShri Abhyankar } 228795936485SShri Abhyankar 228895936485SShri Abhyankar if (!rank) { /* procs[0] */ 228995936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 229095936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 229195936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 229295936485SShri Abhyankar for (i=0; i<size; i++) { 229395936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 229495936485SShri Abhyankar procsnz[i] += rowlengths[j]; 229595936485SShri Abhyankar } 229695936485SShri Abhyankar } 229795936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 229895936485SShri Abhyankar 229995936485SShri Abhyankar /* determine max buffer needed and allocate it */ 230095936485SShri Abhyankar maxnz = 0; 230195936485SShri Abhyankar for (i=0; i<size; i++) { 230295936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 230395936485SShri Abhyankar } 230495936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 230595936485SShri Abhyankar 230695936485SShri Abhyankar /* read in my part of the matrix column indices */ 230795936485SShri Abhyankar nz = procsnz[0]; 230895936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 230995936485SShri Abhyankar mycols = ibuf; 231095936485SShri Abhyankar if (size == 1) nz -= extra_rows; 231195936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 231295936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 231395936485SShri Abhyankar 231495936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 231595936485SShri Abhyankar for (i=1; i<size-1; i++) { 231695936485SShri Abhyankar nz = procsnz[i]; 231795936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 231895936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 231995936485SShri Abhyankar } 232095936485SShri Abhyankar /* read in the stuff for the last proc */ 232195936485SShri Abhyankar if (size != 1) { 232295936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 232395936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 232495936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 232595936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 232695936485SShri Abhyankar } 232795936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 232895936485SShri Abhyankar } else { /* procs[i], i>0 */ 232995936485SShri Abhyankar /* determine buffer space needed for message */ 233095936485SShri Abhyankar nz = 0; 233195936485SShri Abhyankar for (i=0; i<m; i++) { 233295936485SShri Abhyankar nz += locrowlens[i]; 233395936485SShri Abhyankar } 233495936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 233595936485SShri Abhyankar mycols = ibuf; 233695936485SShri Abhyankar /* receive message of column indices*/ 233795936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 233895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 233995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 234095936485SShri Abhyankar } 234195936485SShri Abhyankar 234295936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 234395936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 234495936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 234595936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234695936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234795936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234895936485SShri Abhyankar rowcount = 0; 234995936485SShri Abhyankar nzcount = 0; 235095936485SShri Abhyankar for (i=0; i<mbs; i++) { 235195936485SShri Abhyankar dcount = 0; 235295936485SShri Abhyankar odcount = 0; 235395936485SShri Abhyankar for (j=0; j<bs; j++) { 235495936485SShri Abhyankar kmax = locrowlens[rowcount]; 235595936485SShri Abhyankar for (k=0; k<kmax; k++) { 235695936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 235795936485SShri Abhyankar if (!mask[tmp]) { 235895936485SShri Abhyankar mask[tmp] = 1; 235995936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 236095936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 236195936485SShri Abhyankar } 236295936485SShri Abhyankar } 236395936485SShri Abhyankar rowcount++; 236495936485SShri Abhyankar } 236595936485SShri Abhyankar 236695936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 236795936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 236895936485SShri Abhyankar 236995936485SShri Abhyankar /* zero out the mask elements we set */ 237095936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 237195936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 237295936485SShri Abhyankar } 237395936485SShri Abhyankar if (!sizesset) { 237495936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 237595936485SShri Abhyankar } 237695936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23776816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 237895936485SShri Abhyankar 237995936485SShri Abhyankar if (!rank) { 238095936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 238195936485SShri Abhyankar /* read in my part of the matrix numerical values */ 238295936485SShri Abhyankar nz = procsnz[0]; 238395936485SShri Abhyankar vals = buf; 238495936485SShri Abhyankar mycols = ibuf; 238595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 238695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238795936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 238895936485SShri Abhyankar 238995936485SShri Abhyankar /* insert into matrix */ 239095936485SShri Abhyankar jj = rstart*bs; 239195936485SShri Abhyankar for (i=0; i<m; i++) { 239295936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 239395936485SShri Abhyankar mycols += locrowlens[i]; 239495936485SShri Abhyankar vals += locrowlens[i]; 239595936485SShri Abhyankar jj++; 239695936485SShri Abhyankar } 239795936485SShri Abhyankar 239895936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 239995936485SShri Abhyankar for (i=1; i<size-1; i++) { 240095936485SShri Abhyankar nz = procsnz[i]; 240195936485SShri Abhyankar vals = buf; 240295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 240395936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 240495936485SShri Abhyankar } 240595936485SShri Abhyankar /* the last proc */ 240695936485SShri Abhyankar if (size != 1) { 240795936485SShri Abhyankar nz = procsnz[i] - extra_rows; 240895936485SShri Abhyankar vals = buf; 240995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 241095936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 241195936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 241295936485SShri Abhyankar } 241395936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 241495936485SShri Abhyankar 241595936485SShri Abhyankar } else { 241695936485SShri Abhyankar /* receive numeric values */ 241795936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 241895936485SShri Abhyankar 241995936485SShri Abhyankar /* receive message of values*/ 242095936485SShri Abhyankar vals = buf; 242195936485SShri Abhyankar mycols = ibuf; 242295936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 242395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 242495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 242595936485SShri Abhyankar 242695936485SShri Abhyankar /* insert into matrix */ 242795936485SShri Abhyankar jj = rstart*bs; 242895936485SShri Abhyankar for (i=0; i<m; i++) { 242995936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 243095936485SShri Abhyankar mycols += locrowlens[i]; 243195936485SShri Abhyankar vals += locrowlens[i]; 243295936485SShri Abhyankar jj++; 243395936485SShri Abhyankar } 243495936485SShri Abhyankar } 243595936485SShri Abhyankar 243695936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 243795936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 243895936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 243995936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 244095936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 244195936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 244295936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 244395936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 244495936485SShri Abhyankar PetscFunctionReturn(0); 244595936485SShri Abhyankar } 244695936485SShri Abhyankar 244795936485SShri Abhyankar #undef __FUNCT__ 24484a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2449dcf5cc72SBarry Smith /*XXXXX@ 2450a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2451a30f8f8cSSatish Balay 2452a30f8f8cSSatish Balay Input Parameters: 2453a30f8f8cSSatish Balay . mat - the matrix 2454a30f8f8cSSatish Balay . fact - factor 2455a30f8f8cSSatish Balay 2456c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2457a30f8f8cSSatish Balay 2458a30f8f8cSSatish Balay Level: advanced 2459a30f8f8cSSatish Balay 2460a30f8f8cSSatish Balay Notes: 2461a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2462a30f8f8cSSatish Balay 2463a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2464a30f8f8cSSatish Balay 2465a30f8f8cSSatish Balay .seealso: MatSetOption() 2466dcf5cc72SBarry Smith @XXXXX*/ 2467dcf5cc72SBarry Smith 246824d5174aSHong Zhang 24694a2ae208SSatish Balay #undef __FUNCT__ 2470985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2471985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 247224d5174aSHong Zhang { 247324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2474f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2475ca54ac64SHong Zhang PetscReal atmp; 247687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2477dfbe8321SBarry Smith PetscErrorCode ierr; 24781302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24791302d50aSBarry Smith PetscMPIInt rank,size; 24801302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 248187828ca2SBarry Smith PetscScalar *va; 24828a1c53f2SBarry Smith MatScalar *ba; 2483f4c0e9e4SHong Zhang MPI_Status stat; 248424d5174aSHong Zhang 248524d5174aSHong Zhang PetscFunctionBegin; 2486e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2487985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24881ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2489f4c0e9e4SHong Zhang 24907adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24917adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2492f4c0e9e4SHong Zhang 2493d0f46423SBarry Smith bs = A->rmap->bs; 2494f4c0e9e4SHong Zhang mbs = a->mbs; 2495f4c0e9e4SHong Zhang Mbs = a->Mbs; 2496f4c0e9e4SHong Zhang ba = b->a; 2497f4c0e9e4SHong Zhang bi = b->i; 2498f4c0e9e4SHong Zhang bj = b->j; 2499f4c0e9e4SHong Zhang 2500f4c0e9e4SHong Zhang /* find ownerships */ 2501d0f46423SBarry Smith rowners_bs = A->rmap->range; 2502f4c0e9e4SHong Zhang 2503f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 250482502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2505ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2506f4c0e9e4SHong Zhang 2507f4c0e9e4SHong Zhang /* row_max for B */ 2508b8475685SHong Zhang if (rank != size-1) { 2509f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2510f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2511f4c0e9e4SHong Zhang brow = bs*i; 2512f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2513f4c0e9e4SHong Zhang bcol = bs*(*bj); 2514f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2515ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 251604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2517f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2518f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2519ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2520ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2521f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2522f4c0e9e4SHong Zhang } 2523f4c0e9e4SHong Zhang } 2524f4c0e9e4SHong Zhang bj++; 2525f4c0e9e4SHong Zhang } 2526f4c0e9e4SHong Zhang } 2527f4c0e9e4SHong Zhang 2528f4c0e9e4SHong Zhang /* send values to its owners */ 2529f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2530f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2531ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 25327adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2533ca54ac64SHong Zhang } 2534f4c0e9e4SHong Zhang } 2535f4c0e9e4SHong Zhang 2536f4c0e9e4SHong Zhang /* receive values */ 2537ca54ac64SHong Zhang if (rank) { 2538f4c0e9e4SHong Zhang rvalues = work; 2539ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2540f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 25417adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2542f4c0e9e4SHong Zhang /* process values */ 2543f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2544ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2545f4c0e9e4SHong Zhang } 2546f4c0e9e4SHong Zhang } 2547ca54ac64SHong Zhang } 2548f4c0e9e4SHong Zhang 25491ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2550ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 255124d5174aSHong Zhang PetscFunctionReturn(0); 255224d5174aSHong Zhang } 25532798e883SHong Zhang 25542798e883SHong Zhang #undef __FUNCT__ 255541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 255641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25572798e883SHong Zhang { 25582798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2559dfbe8321SBarry Smith PetscErrorCode ierr; 2560d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25613649974fSBarry Smith PetscScalar *x,*ptr,*from; 2562ffe4fb16SHong Zhang Vec bb1; 25633649974fSBarry Smith const PetscScalar *b; 2564ffe4fb16SHong Zhang 2565ffe4fb16SHong Zhang PetscFunctionBegin; 2566e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2567e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2568ffe4fb16SHong Zhang 2569a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 257041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2571a2b30743SBarry Smith PetscFunctionReturn(0); 2572a2b30743SBarry Smith } 2573a2b30743SBarry Smith 2574ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2575ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 257641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2577ffe4fb16SHong Zhang its--; 2578ffe4fb16SHong Zhang } 2579ffe4fb16SHong Zhang 2580ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2581ffe4fb16SHong Zhang while (its--) { 2582ffe4fb16SHong Zhang 2583ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2584ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2585ffe4fb16SHong Zhang 2586ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25871ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25881ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2589ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25901ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2591ffe4fb16SHong Zhang 2592efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2593ffe4fb16SHong Zhang 2594ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25951ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25963649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2597ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25981ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2599ffe4fb16SHong Zhang 2600ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2601fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2602ffe4fb16SHong Zhang 2603ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26041ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2605a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2606ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2607ffe4fb16SHong Zhang 2608ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2609ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2610ffe4fb16SHong Zhang 2611ffe4fb16SHong Zhang /* local diagonal sweep */ 261241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2613ffe4fb16SHong Zhang } 26146bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2615fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 261641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2617fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 261841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2619fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2620fa22f6d0SBarry Smith Vec xx1; 2621ace3abfcSBarry Smith PetscBool hasop; 262220f1ed55SBarry Smith const PetscScalar *diag; 2623887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 262420f1ed55SBarry Smith PetscInt i,n; 2625fa22f6d0SBarry Smith 2626fa22f6d0SBarry Smith if (!mat->xx1) { 2627fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2628fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2629fa22f6d0SBarry Smith } 2630fa22f6d0SBarry Smith xx1 = mat->xx1; 2631fa22f6d0SBarry Smith bb1 = mat->bb1; 2632fa22f6d0SBarry Smith 263341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2634fa22f6d0SBarry Smith 2635fa22f6d0SBarry Smith if (!mat->diag) { 2636effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2637fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2638fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2639fa22f6d0SBarry Smith } 2640fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2641fa22f6d0SBarry Smith 2642fa22f6d0SBarry Smith if (hasop) { 2643fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2644887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 264520f1ed55SBarry Smith } else { 264620f1ed55SBarry Smith /* 264720f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 264820f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2649887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 265020f1ed55SBarry Smith */ 265120f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26523649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26533649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 265420f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 265520f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2656887ee2caSBarry Smith if (omega == 1.0) { 265720f1ed55SBarry Smith for (i=0; i<n; i++) { 265820f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 265920f1ed55SBarry Smith } 266020f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2661887ee2caSBarry Smith } else { 2662887ee2caSBarry Smith for (i=0; i<n; i++) { 2663887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2664887ee2caSBarry Smith } 2665887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2666887ee2caSBarry Smith } 266720f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26683649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26693649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 267020f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 267120f1ed55SBarry Smith } 2672fa22f6d0SBarry Smith 2673fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2674fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2675fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2676fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2677fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2678fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2679fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2680fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2681fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2682fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2683effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2684fa22f6d0SBarry Smith 2685fa22f6d0SBarry Smith /* local sweep */ 268641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2687fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2688ffe4fb16SHong Zhang } else { 2689e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2690ffe4fb16SHong Zhang } 2691ffe4fb16SHong Zhang PetscFunctionReturn(0); 2692ffe4fb16SHong Zhang } 2693ffe4fb16SHong Zhang 2694ffe4fb16SHong Zhang #undef __FUNCT__ 269541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 269641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2697ffe4fb16SHong Zhang { 2698ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2699dfbe8321SBarry Smith PetscErrorCode ierr; 27002798e883SHong Zhang Vec lvec1,bb1; 27012798e883SHong Zhang 27022798e883SHong Zhang PetscFunctionBegin; 2703e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2704e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27052798e883SHong Zhang 2706c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 27072798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 270841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27092798e883SHong Zhang its--; 27102798e883SHong Zhang } 27112798e883SHong Zhang 27122798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27132798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27142798e883SHong Zhang while (its--) { 2715ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27162798e883SHong Zhang 27172798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27182798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2719efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27202798e883SHong Zhang 2721ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27222798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2723ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27242798e883SHong Zhang 27252798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2726efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27272798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27282798e883SHong Zhang 2729ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27302798e883SHong Zhang 2731c14dc6b6SHong Zhang /* diagonal sweep */ 273241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27332798e883SHong Zhang } 27346bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27356bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27366bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27372798e883SHong Zhang PetscFunctionReturn(0); 27382798e883SHong Zhang } 27392798e883SHong Zhang 2740dfb205c3SBarry Smith #undef __FUNCT__ 2741dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2742dfb205c3SBarry Smith /*@ 2743dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2744dfb205c3SBarry Smith CSR format the local rows. 2745dfb205c3SBarry Smith 2746dfb205c3SBarry Smith Collective on MPI_Comm 2747dfb205c3SBarry Smith 2748dfb205c3SBarry Smith Input Parameters: 2749dfb205c3SBarry Smith + comm - MPI communicator 2750dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2751dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2752dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2753dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2754dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2755dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2756dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2757dfb205c3SBarry Smith . i - row indices 2758dfb205c3SBarry Smith . j - column indices 2759dfb205c3SBarry Smith - a - matrix values 2760dfb205c3SBarry Smith 2761dfb205c3SBarry Smith Output Parameter: 2762dfb205c3SBarry Smith . mat - the matrix 2763dfb205c3SBarry Smith 2764dfb205c3SBarry Smith Level: intermediate 2765dfb205c3SBarry Smith 2766dfb205c3SBarry Smith Notes: 2767dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2768dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2769dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2770dfb205c3SBarry Smith 2771dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2772dfb205c3SBarry Smith 2773dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2774dfb205c3SBarry Smith 2775dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 277669b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2777dfb205c3SBarry Smith @*/ 27787087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2779dfb205c3SBarry Smith { 2780dfb205c3SBarry Smith PetscErrorCode ierr; 2781dfb205c3SBarry Smith 2782dfb205c3SBarry Smith 2783dfb205c3SBarry Smith PetscFunctionBegin; 2784dfb205c3SBarry Smith if (i[0]) { 2785dfb205c3SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2786dfb205c3SBarry Smith } 2787dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2788dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2789dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2790dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2791dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2792dfb205c3SBarry Smith PetscFunctionReturn(0); 2793dfb205c3SBarry Smith } 2794dfb205c3SBarry Smith 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith #undef __FUNCT__ 2797dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2798dfb205c3SBarry Smith /*@C 2799dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2800dfb205c3SBarry Smith (the default parallel PETSc format). 2801dfb205c3SBarry Smith 2802dfb205c3SBarry Smith Collective on MPI_Comm 2803dfb205c3SBarry Smith 2804dfb205c3SBarry Smith Input Parameters: 2805dfb205c3SBarry Smith + A - the matrix 2806dfb205c3SBarry Smith . bs - the block size 2807dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2808dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2809dfb205c3SBarry Smith - v - optional values in the matrix 2810dfb205c3SBarry Smith 2811dfb205c3SBarry Smith Level: developer 2812dfb205c3SBarry Smith 2813dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2814dfb205c3SBarry Smith 281569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2816dfb205c3SBarry Smith @*/ 28177087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2818dfb205c3SBarry Smith { 28194ac538c5SBarry Smith PetscErrorCode ierr; 2820dfb205c3SBarry Smith 2821dfb205c3SBarry Smith PetscFunctionBegin; 28224ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2823dfb205c3SBarry Smith PetscFunctionReturn(0); 2824dfb205c3SBarry Smith } 2825dfb205c3SBarry Smith 2826dfb205c3SBarry Smith 2827