xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision db4deed73f06ae556a0f2e02a0fd6e016e156849)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
267087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
55a30f8f8cSSatish Balay { \
56a30f8f8cSSatish Balay  \
57a30f8f8cSSatish Balay     brow = row/bs;  \
58a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
59a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
60a30f8f8cSSatish Balay       bcol = col/bs; \
61a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
62a30f8f8cSSatish Balay       low = 0; high = nrow; \
63a30f8f8cSSatish Balay       while (high-low > 3) { \
64a30f8f8cSSatish Balay         t = (low+high)/2; \
65a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
66a30f8f8cSSatish Balay         else              low  = t; \
67a30f8f8cSSatish Balay       } \
68a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
69a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
70a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
71a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
72a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
73a30f8f8cSSatish Balay           else                    *bap  = value;  \
74a30f8f8cSSatish Balay           goto a_noinsert; \
75a30f8f8cSSatish Balay         } \
76a30f8f8cSSatish Balay       } \
77a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
78e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
79fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
80a30f8f8cSSatish Balay       N = nrow++ - 1;  \
81a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
82a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
83a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
84a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
85a30f8f8cSSatish Balay       } \
86a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
87a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
88a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
89a30f8f8cSSatish Balay       a_noinsert:; \
90a30f8f8cSSatish Balay     ailen[brow] = nrow; \
91a30f8f8cSSatish Balay }
92e5e170daSBarry Smith 
93a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
94a30f8f8cSSatish Balay { \
95a30f8f8cSSatish Balay     brow = row/bs;  \
96a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
97a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
98a30f8f8cSSatish Balay       bcol = col/bs; \
99a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
100a30f8f8cSSatish Balay       low = 0; high = nrow; \
101a30f8f8cSSatish Balay       while (high-low > 3) { \
102a30f8f8cSSatish Balay         t = (low+high)/2; \
103a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
104a30f8f8cSSatish Balay         else              low  = t; \
105a30f8f8cSSatish Balay       } \
106a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
107a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
108a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
109a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
110a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
111a30f8f8cSSatish Balay           else                    *bap  = value;  \
112a30f8f8cSSatish Balay           goto b_noinsert; \
113a30f8f8cSSatish Balay         } \
114a30f8f8cSSatish Balay       } \
115a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
116e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
117fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
118a30f8f8cSSatish Balay       N = nrow++ - 1;  \
119a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
120a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
121a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
122a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay       } \
124a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
125a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
126a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
127a30f8f8cSSatish Balay       b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat            A = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat            B = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
163910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
164910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
16771fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
168a30f8f8cSSatish Balay   if (!baij->donotstash) {
16959ffdab8SBarry Smith     if (n > baij->n_loc) {
17059ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17159ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
18901b2bd88SHong Zhang           if (a->ignore_ltriangular) {
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19101b2bd88SHong Zhang           } else {
192e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19301b2bd88SHong Zhang           }
19401b2bd88SHong Zhang         }
195a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
196a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
197a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
198a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
199*db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
200*db4deed7SKarl Rupp           else             value = v[i+j*m];
201a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
202a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
203a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
205cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
206a30f8f8cSSatish Balay #endif
207a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
208a30f8f8cSSatish Balay           if (mat->was_assembled) {
209a30f8f8cSSatish Balay             if (!baij->colmap) {
210ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
211a30f8f8cSSatish Balay             }
212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
213a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21471730473SSatish Balay             col  = col - 1;
215a30f8f8cSSatish Balay #else
21671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
217a30f8f8cSSatish Balay #endif
218a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
219ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
220a30f8f8cSSatish Balay               col =  in[j];
221a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
222a30f8f8cSSatish Balay               B = baij->B;
223a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
224a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
225a30f8f8cSSatish Balay               ba=b->a;
22671730473SSatish Balay             } else col += in[j]%bs;
227a30f8f8cSSatish Balay           } else col = in[j];
228*db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
229*db4deed7SKarl Rupp           else             value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
2354cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
236a30f8f8cSSatish Balay       if (!baij->donotstash) {
2375080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
238a30f8f8cSSatish Balay         n_loc = 0;
239a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
240f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
241a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
242a30f8f8cSSatish Balay           if (roworiented) {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
244a30f8f8cSSatish Balay           } else {
245a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
246a30f8f8cSSatish Balay           }
247a30f8f8cSSatish Balay           n_loc++;
248a30f8f8cSSatish Balay         }
249b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
250a30f8f8cSSatish Balay       }
251a30f8f8cSSatish Balay     }
252a30f8f8cSSatish Balay   }
253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
254a30f8f8cSSatish Balay }
255a30f8f8cSSatish Balay 
2564a2ae208SSatish Balay #undef __FUNCT__
257dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
258dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
259a30f8f8cSSatish Balay {
2600880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
261f15d580aSBarry Smith   const MatScalar *value;
262f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
263ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
264dfbe8321SBarry Smith   PetscErrorCode  ierr;
265899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
266899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
267d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2680880e062SHong Zhang 
269a30f8f8cSSatish Balay   PetscFunctionBegin;
2700880e062SHong Zhang   if (!barray) {
2710880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2720880e062SHong Zhang     baij->barray = barray;
2730880e062SHong Zhang   }
2740880e062SHong Zhang 
2750880e062SHong Zhang   if (roworiented) {
2760880e062SHong Zhang     stepval = (n-1)*bs;
2770880e062SHong Zhang   } else {
2780880e062SHong Zhang     stepval = (m-1)*bs;
2790880e062SHong Zhang   }
2800880e062SHong Zhang   for (i=0; i<m; i++) {
2810880e062SHong Zhang     if (im[i] < 0) continue;
2822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
283e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2840880e062SHong Zhang #endif
2850880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2860880e062SHong Zhang       row = im[i] - rstart;
2870880e062SHong Zhang       for (j=0; j<n; j++) {
288f3f98c53SJed Brown         if (im[i] > in[j]) {
289f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
290e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
291f3f98c53SJed Brown         }
2920880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2930880e062SHong Zhang         if ((roworiented) && (n == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2950880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
296f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2970880e062SHong Zhang         } else { /* Here a copy is required */
2980880e062SHong Zhang           if (roworiented) {
2990880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3000880e062SHong Zhang           } else {
3010880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3020880e062SHong Zhang           }
3030880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3040880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3050880e062SHong Zhang               *barray++  = *value++;
3060880e062SHong Zhang             }
3070880e062SHong Zhang           }
3080880e062SHong Zhang           barray -=bs2;
3090880e062SHong Zhang         }
3100880e062SHong Zhang 
3110880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
3120880e062SHong Zhang           col  = in[j] - cstart;
3130880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3140880e062SHong Zhang         }
3150880e062SHong Zhang         else if (in[j] < 0) continue;
3162515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
317cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3180880e062SHong Zhang #endif
3190880e062SHong Zhang         else {
3200880e062SHong Zhang           if (mat->was_assembled) {
3210880e062SHong Zhang             if (!baij->colmap) {
322ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3230880e062SHong Zhang             }
3240880e062SHong Zhang 
3252515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3260880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3271302d50aSBarry Smith             { PetscInt data;
3280880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
329e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang             }
3310880e062SHong Zhang #else
332e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3330880e062SHong Zhang #endif
3340880e062SHong Zhang #endif
3350880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3360880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3370880e062SHong Zhang             col  = (col - 1)/bs;
3380880e062SHong Zhang #else
3390880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3400880e062SHong Zhang #endif
3410880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
342ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3430880e062SHong Zhang               col =  in[j];
3440880e062SHong Zhang             }
3450880e062SHong Zhang           }
3460880e062SHong Zhang           else col = in[j];
347e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3480880e062SHong Zhang         }
3490880e062SHong Zhang       }
3500880e062SHong Zhang     } else {
3514cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3520880e062SHong Zhang       if (!baij->donotstash) {
3530880e062SHong Zhang         if (roworiented) {
3540880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3550880e062SHong Zhang         } else {
3560880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3570880e062SHong Zhang         }
3580880e062SHong Zhang       }
3590880e062SHong Zhang     }
3600880e062SHong Zhang   }
3610880e062SHong Zhang   PetscFunctionReturn(0);
362a30f8f8cSSatish Balay }
363a30f8f8cSSatish Balay 
3644a2ae208SSatish Balay #undef __FUNCT__
3654a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3661302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
367a30f8f8cSSatish Balay {
368f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3696849ba73SBarry Smith   PetscErrorCode ierr;
370d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
371d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
372a30f8f8cSSatish Balay 
373a30f8f8cSSatish Balay   PetscFunctionBegin;
374a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
375e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
376e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
377a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
378a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
379a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
380e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
381e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
382a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
383a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
384c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
385a30f8f8cSSatish Balay         } else {
386a30f8f8cSSatish Balay           if (!baij->colmap) {
387ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
388a30f8f8cSSatish Balay           }
389a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
390a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
391a30f8f8cSSatish Balay           data --;
392a30f8f8cSSatish Balay #else
393a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
394a30f8f8cSSatish Balay #endif
395a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
396a30f8f8cSSatish Balay           else {
397a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
398e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
399a30f8f8cSSatish Balay           }
400a30f8f8cSSatish Balay         }
401a30f8f8cSSatish Balay       }
402a30f8f8cSSatish Balay     } else {
403e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
404a30f8f8cSSatish Balay     }
405a30f8f8cSSatish Balay   }
406a30f8f8cSSatish Balay  PetscFunctionReturn(0);
407a30f8f8cSSatish Balay }
408a30f8f8cSSatish Balay 
4094a2ae208SSatish Balay #undef __FUNCT__
4104a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
411dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
412a30f8f8cSSatish Balay {
413a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
414dfbe8321SBarry Smith   PetscErrorCode ierr;
415a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
416a30f8f8cSSatish Balay 
417a30f8f8cSSatish Balay   PetscFunctionBegin;
418a30f8f8cSSatish Balay   if (baij->size == 1) {
419a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
420a30f8f8cSSatish Balay   } else {
421a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
422f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
423a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
425a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
426a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
427c3aae356SJed Brown       ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4288f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2*sum[1]);
429a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4300b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4310b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4320b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4330b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
434899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
435d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4360b8dc8d2SHong Zhang       MatScalar    *v;
4370b8dc8d2SHong Zhang 
43874ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
439d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4400b8dc8d2SHong Zhang       /* Amat */
4410b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4420b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4430b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4440b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4450b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4460b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4470b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4480b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4490b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4500b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4510b8dc8d2SHong Zhang               /* non-diagonal block */
4520b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4530b8dc8d2SHong Zhang             }
4540b8dc8d2SHong Zhang           }
4550b8dc8d2SHong Zhang         }
4560b8dc8d2SHong Zhang       }
4570b8dc8d2SHong Zhang       /* Bmat */
4580b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4590b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4600b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4610b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4620b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4630b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4640b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4650b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4660b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4670b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4680b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4690b8dc8d2SHong Zhang             }
4700b8dc8d2SHong Zhang           }
4710b8dc8d2SHong Zhang         }
4720b8dc8d2SHong Zhang       }
473d9822059SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4740b8dc8d2SHong Zhang       *norm = 0.0;
475d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4760b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4770b8dc8d2SHong Zhang       }
47874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
479a30f8f8cSSatish Balay     } else {
480e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
481a30f8f8cSSatish Balay     }
482a30f8f8cSSatish Balay   }
483a30f8f8cSSatish Balay   PetscFunctionReturn(0);
484a30f8f8cSSatish Balay }
485a30f8f8cSSatish Balay 
4864a2ae208SSatish Balay #undef __FUNCT__
4874a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
488dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
489a30f8f8cSSatish Balay {
490a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
491dfbe8321SBarry Smith   PetscErrorCode ierr;
4921302d50aSBarry Smith   PetscInt       nstash,reallocs;
493a30f8f8cSSatish Balay   InsertMode     addv;
494a30f8f8cSSatish Balay 
495a30f8f8cSSatish Balay   PetscFunctionBegin;
4964cb17eb5SBarry Smith   if (baij->donotstash || mat->nooffprocentries) {
497a30f8f8cSSatish Balay     PetscFunctionReturn(0);
498a30f8f8cSSatish Balay   }
499a30f8f8cSSatish Balay 
500a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
501c3aae356SJed Brown   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
502e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
503a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
504a30f8f8cSSatish Balay 
505d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5081e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
509a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5101e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
511a30f8f8cSSatish Balay   PetscFunctionReturn(0);
512a30f8f8cSSatish Balay }
513a30f8f8cSSatish Balay 
5144a2ae208SSatish Balay #undef __FUNCT__
5154a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
516dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
517a30f8f8cSSatish Balay {
518a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
519a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5206849ba73SBarry Smith   PetscErrorCode ierr;
52113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
522e44c0bd4SBarry Smith   PetscInt       *row,*col;
523ace3abfcSBarry Smith   PetscBool      other_disassembled;
52413f74950SBarry Smith   PetscMPIInt    n;
525ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
526a30f8f8cSSatish Balay   MatScalar      *val;
527a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
528a30f8f8cSSatish Balay 
52991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
530a30f8f8cSSatish Balay   PetscFunctionBegin;
531a30f8f8cSSatish Balay 
5324cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
533a30f8f8cSSatish Balay     while (1) {
534a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
535a30f8f8cSSatish Balay       if (!flg) break;
536a30f8f8cSSatish Balay 
537a30f8f8cSSatish Balay       for (i=0; i<n;) {
538a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
539a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
540a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
541a30f8f8cSSatish Balay         else       ncols = n-i;
542a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
543dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
544a30f8f8cSSatish Balay         i = j;
545a30f8f8cSSatish Balay       }
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
548a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
549a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
550a30f8f8cSSatish Balay        restore the original flags */
551a30f8f8cSSatish Balay     r1 = baij->roworiented;
552a30f8f8cSSatish Balay     r2 = a->roworiented;
55391c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
554a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
555a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
557a30f8f8cSSatish Balay     while (1) {
558a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
559a30f8f8cSSatish Balay       if (!flg) break;
560a30f8f8cSSatish Balay 
561a30f8f8cSSatish Balay       for (i=0; i<n;) {
562a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
563a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
564a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
565a30f8f8cSSatish Balay         else       ncols = n-i;
566dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         i = j;
568a30f8f8cSSatish Balay       }
569a30f8f8cSSatish Balay     }
570a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
571a30f8f8cSSatish Balay     baij->roworiented = r1;
572a30f8f8cSSatish Balay     a->roworiented    = r2;
57391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
574a30f8f8cSSatish Balay   }
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
577a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
578a30f8f8cSSatish Balay 
579a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
580a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
581a30f8f8cSSatish Balay   /*
582a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
583a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
584a30f8f8cSSatish Balay   */
585a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
586c3aae356SJed Brown     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
587a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
588ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
589a30f8f8cSSatish Balay     }
590a30f8f8cSSatish Balay   }
591a30f8f8cSSatish Balay 
592a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59340781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
594a30f8f8cSSatish Balay   }
595cd6b891eSBarry Smith   ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
597a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
598a30f8f8cSSatish Balay 
59974ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   baij->rowvalues = 0;
6015222a1afSHong Zhang 
602a30f8f8cSSatish Balay   PetscFunctionReturn(0);
603a30f8f8cSSatish Balay }
604a30f8f8cSSatish Balay 
605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6064a2ae208SSatish Balay #undef __FUNCT__
6074a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6086849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
609a30f8f8cSSatish Balay {
610a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
611dfbe8321SBarry Smith   PetscErrorCode    ierr;
612d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6131302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
614ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
615b0a32e0cSBarry Smith   PetscViewer       sviewer;
616f3ef73ceSBarry Smith   PetscViewerFormat format;
617a30f8f8cSSatish Balay 
618a30f8f8cSSatish Balay   PetscFunctionBegin;
619251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
620251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
62132077d6dSBarry Smith   if (iascii) {
622b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
623456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
624a30f8f8cSSatish Balay       MatInfo info;
6257adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6277b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6287b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
629a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
630e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
631a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
632e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
633b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6347b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
636a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
637a30f8f8cSSatish Balay       PetscFunctionReturn(0);
638fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
640a30f8f8cSSatish Balay       PetscFunctionReturn(0);
641c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
642c1490034SHong Zhang       PetscFunctionReturn(0);
643a30f8f8cSSatish Balay     }
644a30f8f8cSSatish Balay   }
645a30f8f8cSSatish Balay 
646a30f8f8cSSatish Balay   if (isdraw) {
647b0a32e0cSBarry Smith     PetscDraw  draw;
648ace3abfcSBarry Smith     PetscBool  isnull;
649b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
650b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
651a30f8f8cSSatish Balay   }
652a30f8f8cSSatish Balay 
653a30f8f8cSSatish Balay   if (size == 1) {
6547adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
655a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
656a30f8f8cSSatish Balay   } else {
657a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
658a30f8f8cSSatish Balay     Mat          A;
65965d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
66065d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
661d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
662a30f8f8cSSatish Balay     MatScalar    *a;
663a30f8f8cSSatish Balay 
664f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6657adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     if (!rank) {
667f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     } else {
669f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
670a30f8f8cSSatish Balay     }
671f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
672d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
6732b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
67452e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay     /* copy over the A part */
67765d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
678a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6791302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
680a30f8f8cSSatish Balay 
681a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
682e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
683a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
684a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
685e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
686a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
687dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
688a30f8f8cSSatish Balay           col++; a += bs;
689a30f8f8cSSatish Balay         }
690a30f8f8cSSatish Balay       }
691a30f8f8cSSatish Balay     }
692a30f8f8cSSatish Balay     /* copy over the B part */
69365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69465d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
695a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
696e9f7bc9eSHong Zhang 
697e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
698a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
699a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
700a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
701a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
702799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
703a30f8f8cSSatish Balay           col++; a += bs;
704a30f8f8cSSatish Balay         }
705a30f8f8cSSatish Balay       }
706a30f8f8cSSatish Balay     }
707a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
708a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
709a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
710a30f8f8cSSatish Balay     /*
711a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
712b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
713a30f8f8cSSatish Balay     */
714b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71565d70643SHong Zhang     if (!rank) {
7167adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7177566de4bSShri Abhyankar           /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/
7187566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ);
719a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     }
721b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7226bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
723a30f8f8cSSatish Balay   }
724a30f8f8cSSatish Balay   PetscFunctionReturn(0);
725a30f8f8cSSatish Balay }
726a30f8f8cSSatish Balay 
7274a2ae208SSatish Balay #undef __FUNCT__
7284a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
729dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
730a30f8f8cSSatish Balay {
731dfbe8321SBarry Smith   PetscErrorCode ierr;
732ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
733a30f8f8cSSatish Balay 
734a30f8f8cSSatish Balay   PetscFunctionBegin;
735251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
736251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
737251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
738251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73932077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
740a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
741a30f8f8cSSatish Balay   } else {
742e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
743a30f8f8cSSatish Balay   }
744a30f8f8cSSatish Balay   PetscFunctionReturn(0);
745a30f8f8cSSatish Balay }
746a30f8f8cSSatish Balay 
7474a2ae208SSatish Balay #undef __FUNCT__
7484a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
749dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
750a30f8f8cSSatish Balay {
751a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
752dfbe8321SBarry Smith   PetscErrorCode ierr;
753a30f8f8cSSatish Balay 
754a30f8f8cSSatish Balay   PetscFunctionBegin;
755a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
756d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
757a30f8f8cSSatish Balay #endif
758a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
759a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7606bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7616bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7636bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
764a30f8f8cSSatish Balay #else
76505b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
766a30f8f8cSSatish Balay #endif
76705b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7746bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7756bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7765755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77705b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77805b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7796bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7806bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7816bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
782ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78305b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
784a30f8f8cSSatish Balay #endif
78559ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78659ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
787899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
788bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
789901853e0SKris Buschelman 
790dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
793901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
794901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
795aa5a9175SDahai Guo   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",PETSC_NULL);CHKERRQ(ierr);
796a30f8f8cSSatish Balay   PetscFunctionReturn(0);
797a30f8f8cSSatish Balay }
798a30f8f8cSSatish Balay 
7994a2ae208SSatish Balay #undef __FUNCT__
800547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
801547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
802547795f9SHong Zhang {
803547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
804547795f9SHong Zhang   PetscErrorCode ierr;
805547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
806547795f9SHong Zhang   PetscScalar    *x,*from;
807547795f9SHong Zhang 
808547795f9SHong Zhang   PetscFunctionBegin;
809547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
810e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
811547795f9SHong Zhang 
812547795f9SHong Zhang   /* diagonal part */
813547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
814547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
815547795f9SHong Zhang 
816547795f9SHong Zhang   /* subdiagonal part */
817547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
818547795f9SHong Zhang 
819547795f9SHong Zhang   /* copy x into the vec slvec0 */
820547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
821547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
822547795f9SHong Zhang 
823547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
824547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
826547795f9SHong Zhang 
827547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
828547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
829547795f9SHong Zhang   /* supperdiagonal part */
830547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
831547795f9SHong Zhang   PetscFunctionReturn(0);
832547795f9SHong Zhang }
833547795f9SHong Zhang 
834547795f9SHong Zhang #undef __FUNCT__
835a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
836dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
837a9d4b620SHong Zhang {
838a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
839dfbe8321SBarry Smith   PetscErrorCode ierr;
840d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
841fa22f6d0SBarry Smith   PetscScalar    *x,*from;
842a9d4b620SHong Zhang 
843a9d4b620SHong Zhang   PetscFunctionBegin;
844a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
845e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
846a9d4b620SHong Zhang 
847a9d4b620SHong Zhang   /* diagonal part */
848a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
849fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
850a9d4b620SHong Zhang 
851a9d4b620SHong Zhang   /* subdiagonal part */
852a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
853fc165ae2SBarry Smith 
854a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8551ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8561ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
857a9d4b620SHong Zhang 
858fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
859fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8601ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
861fc165ae2SBarry Smith 
862fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
863ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
864a9d4b620SHong Zhang   /* supperdiagonal part */
865a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
866a9d4b620SHong Zhang   PetscFunctionReturn(0);
867a9d4b620SHong Zhang }
868a9d4b620SHong Zhang 
869a9d4b620SHong Zhang #undef __FUNCT__
87040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
871dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
872a30f8f8cSSatish Balay {
873a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
874dfbe8321SBarry Smith   PetscErrorCode ierr;
8751302d50aSBarry Smith   PetscInt       nt;
876a30f8f8cSSatish Balay 
877a30f8f8cSSatish Balay   PetscFunctionBegin;
878a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
879e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
880e7e72b3dSBarry Smith 
881a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
882e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88365d70643SHong Zhang 
884ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
885b941877fSHong Zhang   /* do diagonal part */
886b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
887b941877fSHong Zhang   /* do supperdiagonal part */
888ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
889b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
890b941877fSHong Zhang   /* do subdiagonal part */
891b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
892ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
893ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89465d70643SHong Zhang 
895a30f8f8cSSatish Balay   PetscFunctionReturn(0);
896a30f8f8cSSatish Balay }
897a30f8f8cSSatish Balay 
8984a2ae208SSatish Balay #undef __FUNCT__
8994a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
900dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
901a30f8f8cSSatish Balay {
902de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
903dfbe8321SBarry Smith   PetscErrorCode ierr;
904d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
905a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
906a9d4b620SHong Zhang 
907a9d4b620SHong Zhang   PetscFunctionBegin;
908a9d4b620SHong Zhang   /*
9097adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9107adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
911a9d4b620SHong Zhang   */
912a9d4b620SHong Zhang   /* diagonal part */
913a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9142dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
915a9d4b620SHong Zhang 
916a9d4b620SHong Zhang   /* subdiagonal part */
917a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
918a9d4b620SHong Zhang 
919a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9201ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9211ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
922a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9231ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
924a9d4b620SHong Zhang 
925ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9261ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
927ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
928a9d4b620SHong Zhang 
929a9d4b620SHong Zhang   /* supperdiagonal part */
930a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
931a9d4b620SHong Zhang 
932a9d4b620SHong Zhang   PetscFunctionReturn(0);
933a9d4b620SHong Zhang }
934a9d4b620SHong Zhang 
935a9d4b620SHong Zhang #undef __FUNCT__
936a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
937dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
938a9d4b620SHong Zhang {
939a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
940dfbe8321SBarry Smith   PetscErrorCode ierr;
941a30f8f8cSSatish Balay 
942a30f8f8cSSatish Balay   PetscFunctionBegin;
943ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
944b941877fSHong Zhang   /* do diagonal part */
945b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
946b941877fSHong Zhang   /* do supperdiagonal part */
947ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
948de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
949de8b6608SHong Zhang 
950b941877fSHong Zhang   /* do subdiagonal part */
951a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
952ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
953ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
954aa482183SHong Zhang 
955a30f8f8cSSatish Balay   PetscFunctionReturn(0);
956a30f8f8cSSatish Balay }
957a30f8f8cSSatish Balay 
958a30f8f8cSSatish Balay /*
959a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
960a30f8f8cSSatish Balay    diagonal block
961a30f8f8cSSatish Balay */
9624a2ae208SSatish Balay #undef __FUNCT__
9634a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
964dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
965a30f8f8cSSatish Balay {
966a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
967dfbe8321SBarry Smith   PetscErrorCode ierr;
968a30f8f8cSSatish Balay 
969a30f8f8cSSatish Balay   PetscFunctionBegin;
970e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
971a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
972a30f8f8cSSatish Balay   PetscFunctionReturn(0);
973a30f8f8cSSatish Balay }
974a30f8f8cSSatish Balay 
9754a2ae208SSatish Balay #undef __FUNCT__
9764a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
977f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
978a30f8f8cSSatish Balay {
979a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
980dfbe8321SBarry Smith   PetscErrorCode ierr;
981a30f8f8cSSatish Balay 
982a30f8f8cSSatish Balay   PetscFunctionBegin;
983f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
984f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
985a30f8f8cSSatish Balay   PetscFunctionReturn(0);
986a30f8f8cSSatish Balay }
987a30f8f8cSSatish Balay 
9884a2ae208SSatish Balay #undef __FUNCT__
9894a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9901302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
991a30f8f8cSSatish Balay {
992d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
993d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
994d0d4cfc2SHong Zhang   PetscErrorCode ierr;
995d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
996d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
997899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
998d0d4cfc2SHong Zhang 
999a30f8f8cSSatish Balay   PetscFunctionBegin;
1000e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1001d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1002d0d4cfc2SHong Zhang 
1003d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1004d0d4cfc2SHong Zhang     /*
1005d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1006d0d4cfc2SHong Zhang     */
1007d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1008d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1009d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1010d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1011d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1012d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1013d0d4cfc2SHong Zhang     }
101474ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1015d0d4cfc2SHong Zhang   }
1016d0d4cfc2SHong Zhang 
1017e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1018d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1019d0d4cfc2SHong Zhang 
1020d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1021d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1022d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1023d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1024d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1025d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1026d0d4cfc2SHong Zhang 
1027d0d4cfc2SHong Zhang   cmap  = mat->garray;
1028d0d4cfc2SHong Zhang   if (v  || idx) {
1029d0d4cfc2SHong Zhang     if (nztot) {
1030d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1031d0d4cfc2SHong Zhang       PetscInt imark = -1;
1032d0d4cfc2SHong Zhang       if (v) {
1033d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1034d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1035d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1036d0d4cfc2SHong Zhang           else break;
1037d0d4cfc2SHong Zhang         }
1038d0d4cfc2SHong Zhang         imark = i;
1039d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1040d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1041d0d4cfc2SHong Zhang       }
1042d0d4cfc2SHong Zhang       if (idx) {
1043d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1044d0d4cfc2SHong Zhang         if (imark > -1) {
1045d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1046d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1047d0d4cfc2SHong Zhang           }
1048d0d4cfc2SHong Zhang         } else {
1049d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1050d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1051d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1052d0d4cfc2SHong Zhang             else break;
1053d0d4cfc2SHong Zhang           }
1054d0d4cfc2SHong Zhang           imark = i;
1055d0d4cfc2SHong Zhang         }
1056d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1057d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1058d0d4cfc2SHong Zhang       }
1059d0d4cfc2SHong Zhang     } else {
1060d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1061d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1062d0d4cfc2SHong Zhang     }
1063d0d4cfc2SHong Zhang   }
1064d0d4cfc2SHong Zhang   *nz = nztot;
1065d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1066d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1067a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1068a30f8f8cSSatish Balay }
1069a30f8f8cSSatish Balay 
10704a2ae208SSatish Balay #undef __FUNCT__
10714a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10721302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1073a30f8f8cSSatish Balay {
1074a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1075a30f8f8cSSatish Balay 
1076a30f8f8cSSatish Balay   PetscFunctionBegin;
1077e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1078a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1079a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1080a30f8f8cSSatish Balay }
1081a30f8f8cSSatish Balay 
10824a2ae208SSatish Balay #undef __FUNCT__
1083d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1084d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1085d0d4cfc2SHong Zhang {
1086d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1087d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1088d0d4cfc2SHong Zhang 
1089d0d4cfc2SHong Zhang   PetscFunctionBegin;
1090d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1091d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1092d0d4cfc2SHong Zhang }
1093d0d4cfc2SHong Zhang #undef __FUNCT__
1094d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1095d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1096d0d4cfc2SHong Zhang {
1097d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1098d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1099d0d4cfc2SHong Zhang 
1100d0d4cfc2SHong Zhang   PetscFunctionBegin;
1101d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1102d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1103d0d4cfc2SHong Zhang }
1104d0d4cfc2SHong Zhang 
1105d0d4cfc2SHong Zhang #undef __FUNCT__
110699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110899cafbc1SBarry Smith {
110999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111099cafbc1SBarry Smith   PetscErrorCode ierr;
111199cafbc1SBarry Smith 
111299cafbc1SBarry Smith   PetscFunctionBegin;
111399cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111499cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111599cafbc1SBarry Smith   PetscFunctionReturn(0);
111699cafbc1SBarry Smith }
111799cafbc1SBarry Smith 
111899cafbc1SBarry Smith #undef __FUNCT__
111999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112199cafbc1SBarry Smith {
112299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112399cafbc1SBarry Smith   PetscErrorCode ierr;
112499cafbc1SBarry Smith 
112599cafbc1SBarry Smith   PetscFunctionBegin;
112699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112899cafbc1SBarry Smith   PetscFunctionReturn(0);
112999cafbc1SBarry Smith }
113099cafbc1SBarry Smith 
113199cafbc1SBarry Smith #undef __FUNCT__
11324a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1133dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1134a30f8f8cSSatish Balay {
1135a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1136dfbe8321SBarry Smith   PetscErrorCode ierr;
1137a30f8f8cSSatish Balay 
1138a30f8f8cSSatish Balay   PetscFunctionBegin;
1139a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1140a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1141a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1142a30f8f8cSSatish Balay }
1143a30f8f8cSSatish Balay 
11444a2ae208SSatish Balay #undef __FUNCT__
11454a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1146dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1147a30f8f8cSSatish Balay {
1148a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1149a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1150dfbe8321SBarry Smith   PetscErrorCode ierr;
1151a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1152a30f8f8cSSatish Balay 
1153a30f8f8cSSatish Balay   PetscFunctionBegin;
1154d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1155a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1156a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1157a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1158a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1159a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1160a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1161a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1162a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1163a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1164a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1165a30f8f8cSSatish Balay     info->memory       = isend[3];
1166a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1167a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1168d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1169a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1170a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1171a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1172a30f8f8cSSatish Balay     info->memory       = irecv[3];
1173a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1174a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1175d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1176a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1177a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1178a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1179a30f8f8cSSatish Balay     info->memory       = irecv[3];
1180a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1181a30f8f8cSSatish Balay   } else {
1182e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1183a30f8f8cSSatish Balay   }
1184a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1185a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1186a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1187a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1188a30f8f8cSSatish Balay }
1189a30f8f8cSSatish Balay 
11904a2ae208SSatish Balay #undef __FUNCT__
11914a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1192ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool  flg)
1193a30f8f8cSSatish Balay {
1194a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1195d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1196dfbe8321SBarry Smith   PetscErrorCode ierr;
1197a30f8f8cSSatish Balay 
1198a30f8f8cSSatish Balay   PetscFunctionBegin;
1199e98b92d7SKris Buschelman   switch (op) {
1200512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1201e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1203a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1204e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12054e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12064e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1207e98b92d7SKris Buschelman     break;
1208e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12094e0d8c25SBarry Smith     a->roworiented = flg;
12104e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12114e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1212e98b92d7SKris Buschelman     break;
12134e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1214290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1215e98b92d7SKris Buschelman     break;
1216e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12174e0d8c25SBarry Smith     a->donotstash = flg;
1218e98b92d7SKris Buschelman     break;
1219e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12204e0d8c25SBarry Smith     a->ht_flag = flg;
1221e98b92d7SKris Buschelman     break;
12229a4540c5SBarry Smith   case MAT_HERMITIAN:
1223e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1224eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1225547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1226eeffb40dSHong Zhang     break;
1227ffa07934SHong Zhang   case MAT_SPD:
1228ffa07934SHong Zhang     A->spd_set                         = PETSC_TRUE;
1229ffa07934SHong Zhang     A->spd                             = flg;
1230ffa07934SHong Zhang     if (flg) {
1231ffa07934SHong Zhang       A->symmetric                     = PETSC_TRUE;
1232ffa07934SHong Zhang       A->structurally_symmetric        = PETSC_TRUE;
1233ffa07934SHong Zhang       A->symmetric_set                 = PETSC_TRUE;
1234ffa07934SHong Zhang       A->structurally_symmetric_set    = PETSC_TRUE;
1235ffa07934SHong Zhang     }
1236ffa07934SHong Zhang     break;
123777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1238eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1239eeffb40dSHong Zhang     break;
124077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1241eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1242eeffb40dSHong Zhang     break;
12439a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1244e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1245290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124677e54ba9SKris Buschelman     break;
1247d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12484e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1249d0d4cfc2SHong Zhang     break;
1250d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12514e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1252d0d4cfc2SHong Zhang     break;
1253d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12544e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1255d0d4cfc2SHong Zhang     break;
1256e98b92d7SKris Buschelman   default:
1257e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1258a30f8f8cSSatish Balay   }
1259a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1260a30f8f8cSSatish Balay }
1261a30f8f8cSSatish Balay 
12624a2ae208SSatish Balay #undef __FUNCT__
12638115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1264fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1265a30f8f8cSSatish Balay {
1266dfbe8321SBarry Smith   PetscErrorCode ierr;
1267a30f8f8cSSatish Balay   PetscFunctionBegin;
1268815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1269999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1270fc4dec0aSBarry Smith   }
12718115998fSBarry Smith   PetscFunctionReturn(0);
1272a30f8f8cSSatish Balay }
1273a30f8f8cSSatish Balay 
12744a2ae208SSatish Balay #undef __FUNCT__
12754a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1276dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1277a30f8f8cSSatish Balay {
1278a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1279a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1280dfbe8321SBarry Smith   PetscErrorCode ierr;
12815e90f9d9SHong Zhang   PetscInt       nv,m,n;
1282ace3abfcSBarry Smith   PetscBool      flg;
1283a30f8f8cSSatish Balay 
1284a30f8f8cSSatish Balay   PetscFunctionBegin;
1285a30f8f8cSSatish Balay   if (ll != rr) {
1286b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1287e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1288a30f8f8cSSatish Balay   }
1289b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1290b3bf805bSHong Zhang 
12915e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1292e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1293b3bf805bSHong Zhang 
12945e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1295e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12965e90f9d9SHong Zhang 
1297ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12985e90f9d9SHong Zhang 
12995e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1300a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13015e90f9d9SHong Zhang 
13025e90f9d9SHong Zhang   /* scale the diagonal part */
1303a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1304a30f8f8cSSatish Balay 
13055e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1306ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1307a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1308a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1309a30f8f8cSSatish Balay }
1310a30f8f8cSSatish Balay 
13114a2ae208SSatish Balay #undef __FUNCT__
13124a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1313dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1314a30f8f8cSSatish Balay {
1315f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1316dfbe8321SBarry Smith   PetscErrorCode ierr;
1317a30f8f8cSSatish Balay 
1318a30f8f8cSSatish Balay   PetscFunctionBegin;
1319a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1320a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1321a30f8f8cSSatish Balay }
1322a30f8f8cSSatish Balay 
13236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1324a30f8f8cSSatish Balay 
13254a2ae208SSatish Balay #undef __FUNCT__
13264a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1327ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1328a30f8f8cSSatish Balay {
1329a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1330a30f8f8cSSatish Balay   Mat            a,b,c,d;
1331ace3abfcSBarry Smith   PetscBool      flg;
1332dfbe8321SBarry Smith   PetscErrorCode ierr;
1333a30f8f8cSSatish Balay 
1334a30f8f8cSSatish Balay   PetscFunctionBegin;
1335a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1336a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1337a30f8f8cSSatish Balay 
1338a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1339abc0a331SBarry Smith   if (flg) {
1340a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1341a30f8f8cSSatish Balay   }
1342c3aae356SJed Brown   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1343a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1344a30f8f8cSSatish Balay }
1345a30f8f8cSSatish Balay 
13464a2ae208SSatish Balay #undef __FUNCT__
13473c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13483c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13493c896bc6SHong Zhang {
13503c896bc6SHong Zhang   PetscErrorCode ierr;
13513c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13523c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13533c896bc6SHong Zhang 
13543c896bc6SHong Zhang   PetscFunctionBegin;
13553c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13563c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1357d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13583c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1359d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13603c896bc6SHong Zhang   } else {
13613c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13623c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13633c896bc6SHong Zhang   }
13643c896bc6SHong Zhang   PetscFunctionReturn(0);
13653c896bc6SHong Zhang }
13663c896bc6SHong Zhang 
13673c896bc6SHong Zhang #undef __FUNCT__
13684994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13694994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1370273d9f13SBarry Smith {
1371dfbe8321SBarry Smith   PetscErrorCode ierr;
1372273d9f13SBarry Smith 
1373273d9f13SBarry Smith   PetscFunctionBegin;
1374535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1375273d9f13SBarry Smith   PetscFunctionReturn(0);
1376273d9f13SBarry Smith }
1377a5e6ed63SBarry Smith 
13784fe895cdSHong Zhang #undef __FUNCT__
13794fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13804fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13814fe895cdSHong Zhang {
13824fe895cdSHong Zhang   PetscErrorCode ierr;
13834fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13844fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13854fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13864fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13874fe895cdSHong Zhang 
13884fe895cdSHong Zhang   PetscFunctionBegin;
13894fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13904fe895cdSHong Zhang     PetscScalar alpha = a;
13914fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13924fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13930805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13944fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13954fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13964fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13970805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13984fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13994fe895cdSHong Zhang   } else {
1400d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14014fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1402d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14034fe895cdSHong Zhang   }
14044fe895cdSHong Zhang   PetscFunctionReturn(0);
14054fe895cdSHong Zhang }
14064fe895cdSHong Zhang 
1407a5e6ed63SBarry Smith #undef __FUNCT__
1408a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14091302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1410a5e6ed63SBarry Smith {
14116849ba73SBarry Smith   PetscErrorCode ierr;
14121302d50aSBarry Smith   PetscInt       i;
1413ace3abfcSBarry Smith   PetscBool      flg;
1414a5e6ed63SBarry Smith 
14156849ba73SBarry Smith   PetscFunctionBegin;
1416a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1417a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1418e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1419a5e6ed63SBarry Smith   }
1420a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1421a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1422a5e6ed63SBarry Smith }
1423a5e6ed63SBarry Smith 
1424a5e6ed63SBarry Smith 
1425a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1426a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1427a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1428a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1429a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1430a9d4b620SHong Zhang        MatMult_MPISBAIJ,
143197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1432431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1433431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1434a30f8f8cSSatish Balay        0,
1435a30f8f8cSSatish Balay        0,
1436a30f8f8cSSatish Balay        0,
143797304618SKris Buschelman /*10*/ 0,
1438a30f8f8cSSatish Balay        0,
1439a30f8f8cSSatish Balay        0,
144041f059aeSBarry Smith        MatSOR_MPISBAIJ,
1441a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
144297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1443a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1444a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1446a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
144797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1448a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1449a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1450a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1451d519adbfSMatthew Knepley /*24*/ 0,
1452a30f8f8cSSatish Balay        0,
1453a30f8f8cSSatish Balay        0,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
14564994cf47SJed Brown /*29*/ MatSetUp_MPISBAIJ,
1457b5df2d14SHong Zhang        0,
1458a30f8f8cSSatish Balay        0,
1459a30f8f8cSSatish Balay        0,
1460a30f8f8cSSatish Balay        0,
1461d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1462a30f8f8cSSatish Balay        0,
1463a30f8f8cSSatish Balay        0,
1464a30f8f8cSSatish Balay        0,
1465a30f8f8cSSatish Balay        0,
1466d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1467a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1468d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1469a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14703c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1471d519adbfSMatthew Knepley /*44*/ 0,
1472a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1473a30f8f8cSSatish Balay        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476f73d5cc4SBarry Smith /*49*/ 0,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481d519adbfSMatthew Knepley /*54*/ 0,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1484a30f8f8cSSatish Balay        0,
1485a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1486d519adbfSMatthew Knepley /*59*/ 0,
1487a30f8f8cSSatish Balay        0,
1488a30f8f8cSSatish Balay        0,
1489357abbc8SBarry Smith        0,
149024d5174aSHong Zhang        0,
1491d519adbfSMatthew Knepley /*64*/ 0,
149224d5174aSHong Zhang        0,
149324d5174aSHong Zhang        0,
149424d5174aSHong Zhang        0,
149524d5174aSHong Zhang        0,
1496d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
149724d5174aSHong Zhang        0,
149897304618SKris Buschelman        0,
149997304618SKris Buschelman        0,
150097304618SKris Buschelman        0,
1501d519adbfSMatthew Knepley /*74*/ 0,
150297304618SKris Buschelman        0,
150397304618SKris Buschelman        0,
150497304618SKris Buschelman        0,
150597304618SKris Buschelman        0,
1506d519adbfSMatthew Knepley /*79*/ 0,
150797304618SKris Buschelman        0,
150897304618SKris Buschelman        0,
150997304618SKris Buschelman        0,
15105bba2384SShri Abhyankar        MatLoad_MPISBAIJ,
1511d519adbfSMatthew Knepley /*84*/ 0,
1512865e5f61SKris Buschelman        0,
1513865e5f61SKris Buschelman        0,
1514865e5f61SKris Buschelman        0,
1515865e5f61SKris Buschelman        0,
1516d519adbfSMatthew Knepley /*89*/ 0,
1517865e5f61SKris Buschelman        0,
1518865e5f61SKris Buschelman        0,
1519865e5f61SKris Buschelman        0,
1520865e5f61SKris Buschelman        0,
1521d519adbfSMatthew Knepley /*94*/ 0,
1522865e5f61SKris Buschelman        0,
1523865e5f61SKris Buschelman        0,
152499cafbc1SBarry Smith        0,
152599cafbc1SBarry Smith        0,
1526d519adbfSMatthew Knepley /*99*/ 0,
152799cafbc1SBarry Smith        0,
152899cafbc1SBarry Smith        0,
152999cafbc1SBarry Smith        0,
153099cafbc1SBarry Smith        0,
1531d519adbfSMatthew Knepley /*104*/0,
153299cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1533d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1534d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
153595936485SShri Abhyankar        MatRestoreRowUpperTriangular_MPISBAIJ,
153695936485SShri Abhyankar /*109*/0,
153795936485SShri Abhyankar        0,
153895936485SShri Abhyankar        0,
153995936485SShri Abhyankar        0,
154095936485SShri Abhyankar        0,
154195936485SShri Abhyankar /*114*/0,
154295936485SShri Abhyankar        0,
154395936485SShri Abhyankar        0,
154495936485SShri Abhyankar        0,
154595936485SShri Abhyankar        0,
154695936485SShri Abhyankar /*119*/0,
154795936485SShri Abhyankar        0,
154895936485SShri Abhyankar        0,
15495bba2384SShri Abhyankar        0
155099cafbc1SBarry Smith };
1551a30f8f8cSSatish Balay 
1552a30f8f8cSSatish Balay 
1553a30f8f8cSSatish Balay EXTERN_C_BEGIN
15544a2ae208SSatish Balay #undef __FUNCT__
15554a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
155611bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1557a30f8f8cSSatish Balay {
1558a30f8f8cSSatish Balay   PetscFunctionBegin;
1559a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ *)A->data)->A;
1560a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1561a30f8f8cSSatish Balay }
1562a30f8f8cSSatish Balay EXTERN_C_END
1563a30f8f8cSSatish Balay 
1564273d9f13SBarry Smith EXTERN_C_BEGIN
15654a2ae208SSatish Balay #undef __FUNCT__
1566a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
15677087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1568a23d5eceSKris Buschelman {
1569a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1570dfbe8321SBarry Smith   PetscErrorCode ierr;
1571535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1572a23d5eceSKris Buschelman 
1573a23d5eceSKris Buschelman   PetscFunctionBegin;
1574a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1575a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1576e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1577e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1578899cda47SBarry Smith 
1579535b19f3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1580535b19f3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
158126283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
158226283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1583e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1584899cda47SBarry Smith 
1585a23d5eceSKris Buschelman   if (d_nnz) {
1586d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1587e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1588a23d5eceSKris Buschelman     }
1589a23d5eceSKris Buschelman   }
1590a23d5eceSKris Buschelman   if (o_nnz) {
1591d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1592e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1593a23d5eceSKris Buschelman     }
1594a23d5eceSKris Buschelman   }
1595a23d5eceSKris Buschelman 
1596a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1597d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1598d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1599c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1600a23d5eceSKris Buschelman 
1601d0f46423SBarry Smith   B->rmap->bs  = bs;
1602a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1603a23d5eceSKris Buschelman   b->mbs = mbs;
1604a23d5eceSKris Buschelman   b->nbs = mbs;
1605a23d5eceSKris Buschelman   b->Mbs = Mbs;
1606a23d5eceSKris Buschelman   b->Nbs = Mbs;
1607a23d5eceSKris Buschelman 
1608a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1609d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1610a23d5eceSKris Buschelman   }
1611d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1612d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1613a23d5eceSKris Buschelman 
1614d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1615d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1616a23d5eceSKris Buschelman 
1617526dfc15SBarry Smith   if (!B->preallocated) {
1618f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1619d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16209c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
162152e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1622f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1623d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16244aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
162552e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
162615bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1627526dfc15SBarry Smith   }
1628a23d5eceSKris Buschelman 
1629526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1630526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1631526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1632a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1633a23d5eceSKris Buschelman }
1634a23d5eceSKris Buschelman EXTERN_C_END
1635a23d5eceSKris Buschelman 
16365c9eb25fSBarry Smith EXTERN_C_BEGIN
1637dfb205c3SBarry Smith #undef __FUNCT__
1638dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1639dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1640dfb205c3SBarry Smith {
1641dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1642dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1643dfb205c3SBarry Smith   const PetscInt *JJ=0;
1644dfb205c3SBarry Smith   PetscScalar    *values=0;
1645dfb205c3SBarry Smith   PetscErrorCode ierr;
1646dfb205c3SBarry Smith 
1647dfb205c3SBarry Smith   PetscFunctionBegin;
1648dfb205c3SBarry Smith 
1649dfb205c3SBarry Smith   if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1650dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1651dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1652dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1653dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1654e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1655dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1656dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1657dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1658dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1659dfb205c3SBarry Smith 
1660dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1661dfb205c3SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
1662dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1663dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1664dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1665dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1666dfb205c3SBarry Smith     JJ  = jj + ii[i];
1667dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1668dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1669dfb205c3SBarry Smith       JJ++;
1670dfb205c3SBarry Smith     }
1671dfb205c3SBarry Smith     d = 0;
1672dfb205c3SBarry Smith     for (; j<nz; j++) {
1673dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1674dfb205c3SBarry Smith       d++;
1675dfb205c3SBarry Smith     }
1676dfb205c3SBarry Smith     d_nnz[i] = d;
1677dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1678dfb205c3SBarry Smith   }
1679dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1680dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1681dfb205c3SBarry Smith 
1682dfb205c3SBarry Smith   values = (PetscScalar*)V;
1683dfb205c3SBarry Smith   if (!values) {
1684dfb205c3SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
1685dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1686dfb205c3SBarry Smith   }
1687dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1688dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1689dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1690dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1691dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1692dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1693dfb205c3SBarry Smith   }
1694dfb205c3SBarry Smith 
1695dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1696dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1697dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16987827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1699dfb205c3SBarry Smith   PetscFunctionReturn(0);
1700dfb205c3SBarry Smith }
1701dfb205c3SBarry Smith EXTERN_C_END
1702dfb205c3SBarry Smith 
1703dfb205c3SBarry Smith EXTERN_C_BEGIN
1704611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
17057087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1706611f576cSBarry Smith #endif
1707b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1708b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1709b5e56a35SBarry Smith #endif
17105c9eb25fSBarry Smith EXTERN_C_END
17115c9eb25fSBarry Smith 
17120bad9183SKris Buschelman /*MC
1713fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1714828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1715828413b8SBarry Smith    the matrix is stored.
1716828413b8SBarry Smith 
1717828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1718828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17190bad9183SKris Buschelman 
17200bad9183SKris Buschelman    Options Database Keys:
17210bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17220bad9183SKris Buschelman 
17230bad9183SKris Buschelman   Level: beginner
17240bad9183SKris Buschelman 
17250bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17260bad9183SKris Buschelman M*/
17270bad9183SKris Buschelman 
1728a23d5eceSKris Buschelman EXTERN_C_BEGIN
172919fd82e9SBarry Smith extern PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1730aa5a9175SDahai Guo EXTERN_C_END
1731aa5a9175SDahai Guo 
1732aa5a9175SDahai Guo EXTERN_C_BEGIN
1733a23d5eceSKris Buschelman #undef __FUNCT__
17344a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17357087cfbeSBarry Smith PetscErrorCode  MatCreate_MPISBAIJ(Mat B)
1736b5df2d14SHong Zhang {
1737b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1738dfbe8321SBarry Smith   PetscErrorCode ierr;
1739ace3abfcSBarry Smith   PetscBool      flg;
1740b5df2d14SHong Zhang 
1741b5df2d14SHong Zhang   PetscFunctionBegin;
1742b5df2d14SHong Zhang 
174338f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1744b0a32e0cSBarry Smith   B->data = (void*)b;
1745b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1746b5df2d14SHong Zhang 
1747b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1748b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1749b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1750b5df2d14SHong Zhang 
1751b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
17527adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17537adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1754b5df2d14SHong Zhang 
1755b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1756899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1757b5df2d14SHong Zhang 
1758b5df2d14SHong Zhang   /* build cache for off array entries formed */
17597adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1760b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1761b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1762b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1763b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1764b5df2d14SHong Zhang 
1765b5df2d14SHong Zhang   /* stuff used in block assembly */
1766b5df2d14SHong Zhang   b->barray       = 0;
1767b5df2d14SHong Zhang 
1768b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1769b5df2d14SHong Zhang   b->lvec         = 0;
1770b5df2d14SHong Zhang   b->Mvctx        = 0;
177140781036SHong Zhang   b->slvec0       = 0;
177240781036SHong Zhang   b->slvec0b      = 0;
177340781036SHong Zhang   b->slvec1       = 0;
177440781036SHong Zhang   b->slvec1a      = 0;
177540781036SHong Zhang   b->slvec1b      = 0;
177640781036SHong Zhang   b->sMvctx       = 0;
1777b5df2d14SHong Zhang 
1778b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1779b5df2d14SHong Zhang   b->rowindices   = 0;
1780b5df2d14SHong Zhang   b->rowvalues    = 0;
1781b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1782b5df2d14SHong Zhang 
1783b5df2d14SHong Zhang   /* hash table stuff */
1784b5df2d14SHong Zhang   b->ht           = 0;
1785b5df2d14SHong Zhang   b->hd           = 0;
1786b5df2d14SHong Zhang   b->ht_size      = 0;
1787b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1788b5df2d14SHong Zhang   b->ht_fact      = 0;
1789b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1790b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1791b5df2d14SHong Zhang 
17927a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
17937a868f3eSHong Zhang   b->ijonly       = PETSC_FALSE;
17947a868f3eSHong Zhang 
179559ffdab8SBarry Smith   b->in_loc       = 0;
179659ffdab8SBarry Smith   b->v_loc        = 0;
179759ffdab8SBarry Smith   b->n_loc        = 0;
17987adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
1799acfcf0e5SJed Brown     ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1800b5df2d14SHong Zhang     if (flg) {
1801f6275e2eSBarry Smith       PetscReal fact = 1.39;
18024e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
18038c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1804b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1805b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18061e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1807b5df2d14SHong Zhang     }
18088c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18098c07d4e3SBarry Smith 
1810b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1811ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1812b5e56a35SBarry Smith                                            "MatGetFactor_mpisbaij_pastix",
1813b5e56a35SBarry Smith                                            MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1814b5e56a35SBarry Smith #endif
1815611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1816ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1817bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1818bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1819611f576cSBarry Smith #endif
1820b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1821b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1822b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1823b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1824b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1825b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1826b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1827b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1828b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1829a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1830a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1831a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1832dfb205c3SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",
1833dfb205c3SBarry Smith                                      "MatMPISBAIJSetPreallocationCSR_MPISBAIJ",
1834dfb205c3SBarry Smith                                      MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1835aa5a9175SDahai Guo   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",
1836aa5a9175SDahai Guo                                      "MatConvert_MPISBAIJ_MPISBSTRM",
1837aa5a9175SDahai Guo                                       MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1838aa5a9175SDahai Guo 
183923ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
184023ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
184123ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
184223ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
184317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1844b5df2d14SHong Zhang   PetscFunctionReturn(0);
1845b5df2d14SHong Zhang }
1846273d9f13SBarry Smith EXTERN_C_END
1847b5df2d14SHong Zhang 
1848209238afSKris Buschelman /*MC
1849002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1850209238afSKris Buschelman 
1851209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1852209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1853209238afSKris Buschelman 
1854209238afSKris Buschelman    Options Database Keys:
1855209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1856209238afSKris Buschelman 
1857209238afSKris Buschelman   Level: beginner
1858209238afSKris Buschelman 
1859209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1860209238afSKris Buschelman M*/
1861209238afSKris Buschelman 
18624a2ae208SSatish Balay #undef __FUNCT__
18634a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1864b5df2d14SHong Zhang /*@C
1865b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1866b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1867b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1868b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1869b5df2d14SHong Zhang 
1870b5df2d14SHong Zhang    Collective on Mat
1871b5df2d14SHong Zhang 
1872b5df2d14SHong Zhang    Input Parameters:
1873b5df2d14SHong Zhang +  A - the matrix
1874b5df2d14SHong Zhang .  bs   - size of blockk
1875b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1876b5df2d14SHong Zhang            submatrix  (same for all local rows)
1877b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18786d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
187995742e49SBarry Smith            (possibly different for each block row) or PETSC_NULL.  If you plan to factor the matrix you must leave room
188095742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1881b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1882b5df2d14SHong Zhang            submatrix (same for all local rows).
1883b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1884c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
1885c2fc9fa9SBarry Smith            (possibly different for each block row) or PETSC_NULL.
1886b5df2d14SHong Zhang 
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang    Options Database Keys:
1889b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1890b5df2d14SHong Zhang                      block calculations (much slower)
1891b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1892b5df2d14SHong Zhang 
1893b5df2d14SHong Zhang    Notes:
1894b5df2d14SHong Zhang 
1895b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1896b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1897b5df2d14SHong Zhang 
189849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
189949a6f317SBarry Smith 
1900b5df2d14SHong Zhang    Storage Information:
1901b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1902b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1903b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1904b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1905b5df2d14SHong Zhang 
1906b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1907b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1908b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1909b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1910b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1911b5df2d14SHong Zhang 
1912aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1913aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1914aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1915aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1916aa95bbe8SBarry Smith 
1917b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1918b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1919b5df2d14SHong Zhang 
1920b5df2d14SHong Zhang .vb
1921b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1922b5df2d14SHong Zhang           -------------------
1923c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
1924c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
1925c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
1926b5df2d14SHong Zhang           -------------------
1927b5df2d14SHong Zhang .ve
1928b5df2d14SHong Zhang 
1929b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1930b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19316d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19326d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1933b5df2d14SHong Zhang 
19346d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19356d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1936c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1937c2fc9fa9SBarry Smith 
1938b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1939b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1940b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1941b5df2d14SHong Zhang    matrices.
1942b5df2d14SHong Zhang 
1943b5df2d14SHong Zhang    Level: intermediate
1944b5df2d14SHong Zhang 
1945b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1946b5df2d14SHong Zhang 
1947ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
1948b5df2d14SHong Zhang @*/
19497087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1950b5df2d14SHong Zhang {
19514ac538c5SBarry Smith   PetscErrorCode ierr;
1952b5df2d14SHong Zhang 
1953b5df2d14SHong Zhang   PetscFunctionBegin;
19546ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19556ba663aaSJed Brown   PetscValidType(B,1);
19566ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19574ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1958b5df2d14SHong Zhang   PetscFunctionReturn(0);
1959b5df2d14SHong Zhang }
1960b5df2d14SHong Zhang 
19614a2ae208SSatish Balay #undef __FUNCT__
196269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1963a30f8f8cSSatish Balay /*@C
196469b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1965a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1966a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1967a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1968a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1969a30f8f8cSSatish Balay 
1970a30f8f8cSSatish Balay    Collective on MPI_Comm
1971a30f8f8cSSatish Balay 
1972a30f8f8cSSatish Balay    Input Parameters:
1973a30f8f8cSSatish Balay +  comm - MPI communicator
1974a30f8f8cSSatish Balay .  bs   - size of blockk
1975a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1976a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1977a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1978a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1979a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1980a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1981a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1982a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1983a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1984a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1985a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19866d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19876d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
198895742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
198995742e49SBarry Smith            set its value even if it is zero.
1990a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1991a30f8f8cSSatish Balay            submatrix (same for all local rows).
1992a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1993a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1994a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1995a30f8f8cSSatish Balay 
1996a30f8f8cSSatish Balay    Output Parameter:
1997a30f8f8cSSatish Balay .  A - the matrix
1998a30f8f8cSSatish Balay 
1999a30f8f8cSSatish Balay    Options Database Keys:
2000a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2001a30f8f8cSSatish Balay                      block calculations (much slower)
2002a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2003a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2004a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2005a30f8f8cSSatish Balay 
2006175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2007ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2008175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2009175b88e8SBarry Smith 
2010a30f8f8cSSatish Balay    Notes:
2011d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20126d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2013d1be2dadSMatthew Knepley 
2014a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2015a30f8f8cSSatish Balay    (possibly both).
2016a30f8f8cSSatish Balay 
2017a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2018a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2019a30f8f8cSSatish Balay 
202049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
202149a6f317SBarry Smith 
2022a30f8f8cSSatish Balay    Storage Information:
2023a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2024a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2025a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2026a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2027a30f8f8cSSatish Balay 
2028a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2029a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
2030a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2031a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2032a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2033a30f8f8cSSatish Balay 
2034a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2035a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2036a30f8f8cSSatish Balay 
2037a30f8f8cSSatish Balay .vb
2038a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2039a30f8f8cSSatish Balay           -------------------
2040c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
2041c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
2042c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
2043a30f8f8cSSatish Balay           -------------------
2044a30f8f8cSSatish Balay .ve
2045a30f8f8cSSatish Balay 
2046a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2047a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20486d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20496d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2050a30f8f8cSSatish Balay 
20516d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20526d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2053a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2054a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2055a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2056a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2057a30f8f8cSSatish Balay    matrices.
2058a30f8f8cSSatish Balay 
2059a30f8f8cSSatish Balay    Level: intermediate
2060a30f8f8cSSatish Balay 
2061a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2062a30f8f8cSSatish Balay 
206369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2064a30f8f8cSSatish Balay @*/
2065a30f8f8cSSatish Balay 
206669b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2067a30f8f8cSSatish Balay {
20686849ba73SBarry Smith   PetscErrorCode ierr;
20691302d50aSBarry Smith   PetscMPIInt    size;
2070a30f8f8cSSatish Balay 
2071a30f8f8cSSatish Balay   PetscFunctionBegin;
2072f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2073f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2074273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2075273d9f13SBarry Smith   if (size > 1) {
2076b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2077b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2078273d9f13SBarry Smith   } else {
2079273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2080273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2081273d9f13SBarry Smith   }
2082a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2083a30f8f8cSSatish Balay }
2084a30f8f8cSSatish Balay 
2085a30f8f8cSSatish Balay 
20864a2ae208SSatish Balay #undef __FUNCT__
20874a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20886849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2089a30f8f8cSSatish Balay {
2090a30f8f8cSSatish Balay   Mat            mat;
2091a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2092dfbe8321SBarry Smith   PetscErrorCode ierr;
2093d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2094387bc808SHong Zhang   PetscScalar    *array;
2095a30f8f8cSSatish Balay 
2096a30f8f8cSSatish Balay   PetscFunctionBegin;
2097a30f8f8cSSatish Balay   *newmat       = 0;
20987adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2099d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21007adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21011d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21021e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21031e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2104e1b6402fSHong Zhang 
2105d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2106273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
210782327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21087fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21097fff6886SHong Zhang 
2110b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2111a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2112a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2113a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2114a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2115a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2116a30f8f8cSSatish Balay 
2117899cda47SBarry Smith 
2118a30f8f8cSSatish Balay   a->size         = oldmat->size;
2119a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2120a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2121a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2122a30f8f8cSSatish Balay   a->rowindices   = 0;
2123a30f8f8cSSatish Balay   a->rowvalues    = 0;
2124a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2125a30f8f8cSSatish Balay   a->barray       = 0;
2126899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2127899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2128899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2129899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2130a30f8f8cSSatish Balay 
2131a30f8f8cSSatish Balay   /* hash table stuff */
2132a30f8f8cSSatish Balay   a->ht           = 0;
2133a30f8f8cSSatish Balay   a->hd           = 0;
2134a30f8f8cSSatish Balay   a->ht_size      = 0;
2135a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2136a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2137a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2138a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2139a30f8f8cSSatish Balay 
2140899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2141a30f8f8cSSatish Balay   if (oldmat->colmap) {
2142a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2143a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2144a30f8f8cSSatish Balay #else
21451302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
214652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21471302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2148a30f8f8cSSatish Balay #endif
2149a30f8f8cSSatish Balay   } else a->colmap = 0;
2150387bc808SHong Zhang 
2151a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21521302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
215352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21541302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2155a30f8f8cSSatish Balay   } else a->garray = 0;
2156a30f8f8cSSatish Balay 
2157533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2158a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
215952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2160a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
216152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
216282327fa8SHong Zhang 
216382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
216452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
216582327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
216652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2167387bc808SHong Zhang 
2168387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21691ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2170778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2171778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21721ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21731ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2174778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21751ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
217652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
217752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
217852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
217952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
218052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2181387bc808SHong Zhang 
2182387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2183387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2184387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
218552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
218682327fa8SHong Zhang 
2187a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
218852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
219052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2191140e18c1SBarry Smith   ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2192a30f8f8cSSatish Balay   *newmat = mat;
2193a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2194a30f8f8cSSatish Balay }
2195a30f8f8cSSatish Balay 
21964a2ae208SSatish Balay #undef __FUNCT__
21975bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2198112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
219995936485SShri Abhyankar {
220095936485SShri Abhyankar   PetscErrorCode ierr;
220195936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
220295936485SShri Abhyankar   PetscScalar    *vals,*buf;
220395936485SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
220495936485SShri Abhyankar   MPI_Status     status;
2205adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2206adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
220795936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
220895936485SShri Abhyankar   PetscInt       bs=1,Mbs,mbs,extra_rows;
220995936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
221095936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
221195936485SShri Abhyankar   int            fd;
221295936485SShri Abhyankar 
221395936485SShri Abhyankar   PetscFunctionBegin;
221495936485SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
221595936485SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
221695936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
221795936485SShri Abhyankar 
221895936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
221995936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
222095936485SShri Abhyankar   if (!rank) {
222195936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
222295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
222395936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
222495936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
222595936485SShri Abhyankar   }
222695936485SShri Abhyankar 
222795936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
222895936485SShri Abhyankar 
222995936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
223095936485SShri Abhyankar   M = header[1]; N = header[2];
223195936485SShri Abhyankar 
223295936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
223395936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
223495936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
223595936485SShri Abhyankar 
223695936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
223795936485SShri Abhyankar   if (sizesset) {
223895936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
223995936485SShri Abhyankar   }
2240abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2241abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
224295936485SShri Abhyankar 
224395936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
224495936485SShri Abhyankar 
224595936485SShri Abhyankar   /*
224695936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
224795936485SShri Abhyankar      divisible by the blocksize
224895936485SShri Abhyankar   */
224995936485SShri Abhyankar   Mbs        = M/bs;
225095936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
225195936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
225295936485SShri Abhyankar   else                  Mbs++;
225395936485SShri Abhyankar   if (extra_rows &&!rank) {
225495936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
225595936485SShri Abhyankar   }
225695936485SShri Abhyankar 
225795936485SShri Abhyankar   /* determine ownership of all rows */
225895936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
225995936485SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
226095936485SShri Abhyankar     m          = mbs*bs;
226195936485SShri Abhyankar   } else { /* User Set */
226295936485SShri Abhyankar     m          = newmat->rmap->n;
226395936485SShri Abhyankar     mbs        = m/bs;
226495936485SShri Abhyankar   }
226595936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
226695936485SShri Abhyankar   mmbs       = PetscMPIIntCast(mbs);
226795936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
226895936485SShri Abhyankar   rowners[0] = 0;
226995936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
227095936485SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
227195936485SShri Abhyankar   rstart = rowners[rank];
227295936485SShri Abhyankar   rend   = rowners[rank+1];
227395936485SShri Abhyankar 
227495936485SShri Abhyankar   /* distribute row lengths to all processors */
2275adcec1e5SJed Brown   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
227695936485SShri Abhyankar   if (!rank) {
227795936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
227895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
227995936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
228095936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
228195936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
228295936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
228395936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
228495936485SShri Abhyankar   } else {
228595936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
228695936485SShri Abhyankar   }
228795936485SShri Abhyankar 
228895936485SShri Abhyankar   if (!rank) {   /* procs[0] */
228995936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
229095936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
229195936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
229295936485SShri Abhyankar     for (i=0; i<size; i++) {
229395936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
229495936485SShri Abhyankar         procsnz[i] += rowlengths[j];
229595936485SShri Abhyankar       }
229695936485SShri Abhyankar     }
229795936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
229895936485SShri Abhyankar 
229995936485SShri Abhyankar     /* determine max buffer needed and allocate it */
230095936485SShri Abhyankar     maxnz = 0;
230195936485SShri Abhyankar     for (i=0; i<size; i++) {
230295936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
230395936485SShri Abhyankar     }
230495936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
230595936485SShri Abhyankar 
230695936485SShri Abhyankar     /* read in my part of the matrix column indices  */
230795936485SShri Abhyankar     nz     = procsnz[0];
230895936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
230995936485SShri Abhyankar     mycols = ibuf;
231095936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
231195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
231295936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
231395936485SShri Abhyankar 
231495936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
231595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
231695936485SShri Abhyankar       nz   = procsnz[i];
231795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
231895936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
231995936485SShri Abhyankar     }
232095936485SShri Abhyankar     /* read in the stuff for the last proc */
232195936485SShri Abhyankar     if (size != 1) {
232295936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
232395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
232495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
232595936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
232695936485SShri Abhyankar     }
232795936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
232895936485SShri Abhyankar   } else {  /* procs[i], i>0 */
232995936485SShri Abhyankar     /* determine buffer space needed for message */
233095936485SShri Abhyankar     nz = 0;
233195936485SShri Abhyankar     for (i=0; i<m; i++) {
233295936485SShri Abhyankar       nz += locrowlens[i];
233395936485SShri Abhyankar     }
233495936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
233595936485SShri Abhyankar     mycols = ibuf;
233695936485SShri Abhyankar     /* receive message of column indices*/
233795936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
233895936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
233995936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
234095936485SShri Abhyankar   }
234195936485SShri Abhyankar 
234295936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
234395936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
234495936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
234595936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234695936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234795936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234895936485SShri Abhyankar   rowcount = 0;
234995936485SShri Abhyankar   nzcount  = 0;
235095936485SShri Abhyankar   for (i=0; i<mbs; i++) {
235195936485SShri Abhyankar     dcount  = 0;
235295936485SShri Abhyankar     odcount = 0;
235395936485SShri Abhyankar     for (j=0; j<bs; j++) {
235495936485SShri Abhyankar       kmax = locrowlens[rowcount];
235595936485SShri Abhyankar       for (k=0; k<kmax; k++) {
235695936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
235795936485SShri Abhyankar         if (!mask[tmp]) {
235895936485SShri Abhyankar           mask[tmp] = 1;
235995936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
236095936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
236195936485SShri Abhyankar         }
236295936485SShri Abhyankar       }
236395936485SShri Abhyankar       rowcount++;
236495936485SShri Abhyankar     }
236595936485SShri Abhyankar 
236695936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
236795936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
236895936485SShri Abhyankar 
236995936485SShri Abhyankar     /* zero out the mask elements we set */
237095936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
237195936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
237295936485SShri Abhyankar   }
237395936485SShri Abhyankar     if (!sizesset) {
237495936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
237595936485SShri Abhyankar   }
237695936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
23776816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
237895936485SShri Abhyankar 
237995936485SShri Abhyankar   if (!rank) {
238095936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
238195936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
238295936485SShri Abhyankar     nz = procsnz[0];
238395936485SShri Abhyankar     vals = buf;
238495936485SShri Abhyankar     mycols = ibuf;
238595936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
238695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
238795936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
238895936485SShri Abhyankar 
238995936485SShri Abhyankar     /* insert into matrix */
239095936485SShri Abhyankar     jj      = rstart*bs;
239195936485SShri Abhyankar     for (i=0; i<m; i++) {
239295936485SShri Abhyankar       ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
239395936485SShri Abhyankar       mycols += locrowlens[i];
239495936485SShri Abhyankar       vals   += locrowlens[i];
239595936485SShri Abhyankar       jj++;
239695936485SShri Abhyankar     }
239795936485SShri Abhyankar 
239895936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
239995936485SShri Abhyankar     for (i=1; i<size-1; i++) {
240095936485SShri Abhyankar       nz   = procsnz[i];
240195936485SShri Abhyankar       vals = buf;
240295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
240395936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
240495936485SShri Abhyankar     }
240595936485SShri Abhyankar     /* the last proc */
240695936485SShri Abhyankar     if (size != 1) {
240795936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
240895936485SShri Abhyankar       vals = buf;
240995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
241095936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
241195936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
241295936485SShri Abhyankar     }
241395936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
241495936485SShri Abhyankar 
241595936485SShri Abhyankar   } else {
241695936485SShri Abhyankar     /* receive numeric values */
241795936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
241895936485SShri Abhyankar 
241995936485SShri Abhyankar     /* receive message of values*/
242095936485SShri Abhyankar     vals   = buf;
242195936485SShri Abhyankar     mycols = ibuf;
242295936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
242395936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
242495936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
242595936485SShri Abhyankar 
242695936485SShri Abhyankar     /* insert into matrix */
242795936485SShri Abhyankar     jj      = rstart*bs;
242895936485SShri Abhyankar     for (i=0; i<m; i++) {
242995936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
243095936485SShri Abhyankar       mycols += locrowlens[i];
243195936485SShri Abhyankar       vals   += locrowlens[i];
243295936485SShri Abhyankar       jj++;
243395936485SShri Abhyankar     }
243495936485SShri Abhyankar   }
243595936485SShri Abhyankar 
243695936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
243795936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
243895936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
243995936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
244095936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
244195936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
244295936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244395936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244495936485SShri Abhyankar   PetscFunctionReturn(0);
244595936485SShri Abhyankar }
244695936485SShri Abhyankar 
244795936485SShri Abhyankar #undef __FUNCT__
24484a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2449dcf5cc72SBarry Smith /*XXXXX@
2450a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2451a30f8f8cSSatish Balay 
2452a30f8f8cSSatish Balay    Input Parameters:
2453a30f8f8cSSatish Balay .  mat  - the matrix
2454a30f8f8cSSatish Balay .  fact - factor
2455a30f8f8cSSatish Balay 
2456c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2457a30f8f8cSSatish Balay 
2458a30f8f8cSSatish Balay    Level: advanced
2459a30f8f8cSSatish Balay 
2460a30f8f8cSSatish Balay   Notes:
2461a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2462a30f8f8cSSatish Balay 
2463a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2464a30f8f8cSSatish Balay 
2465a30f8f8cSSatish Balay .seealso: MatSetOption()
2466dcf5cc72SBarry Smith @XXXXX*/
2467dcf5cc72SBarry Smith 
246824d5174aSHong Zhang 
24694a2ae208SSatish Balay #undef __FUNCT__
2470985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2471985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
247224d5174aSHong Zhang {
247324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2474f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2475ca54ac64SHong Zhang   PetscReal      atmp;
247687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2477dfbe8321SBarry Smith   PetscErrorCode ierr;
24781302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24791302d50aSBarry Smith   PetscMPIInt    rank,size;
24801302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
248187828ca2SBarry Smith   PetscScalar    *va;
24828a1c53f2SBarry Smith   MatScalar      *ba;
2483f4c0e9e4SHong Zhang   MPI_Status     stat;
248424d5174aSHong Zhang 
248524d5174aSHong Zhang   PetscFunctionBegin;
2486e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2487985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24881ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2489f4c0e9e4SHong Zhang 
24907adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24917adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2492f4c0e9e4SHong Zhang 
2493d0f46423SBarry Smith   bs   = A->rmap->bs;
2494f4c0e9e4SHong Zhang   mbs  = a->mbs;
2495f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2496f4c0e9e4SHong Zhang   ba   = b->a;
2497f4c0e9e4SHong Zhang   bi   = b->i;
2498f4c0e9e4SHong Zhang   bj   = b->j;
2499f4c0e9e4SHong Zhang 
2500f4c0e9e4SHong Zhang   /* find ownerships */
2501d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2502f4c0e9e4SHong Zhang 
2503f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
250482502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2505ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2506f4c0e9e4SHong Zhang 
2507f4c0e9e4SHong Zhang   /* row_max for B */
2508b8475685SHong Zhang   if (rank != size-1) {
2509f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2510f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2511f4c0e9e4SHong Zhang       brow  = bs*i;
2512f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2513f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2514f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2515ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
251604d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2517f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2518f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2519ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2520ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2521f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2522f4c0e9e4SHong Zhang           }
2523f4c0e9e4SHong Zhang         }
2524f4c0e9e4SHong Zhang         bj++;
2525f4c0e9e4SHong Zhang       }
2526f4c0e9e4SHong Zhang     }
2527f4c0e9e4SHong Zhang 
2528f4c0e9e4SHong Zhang     /* send values to its owners */
2529f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2530f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2531ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
25327adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2533ca54ac64SHong Zhang     }
2534f4c0e9e4SHong Zhang   }
2535f4c0e9e4SHong Zhang 
2536f4c0e9e4SHong Zhang   /* receive values */
2537ca54ac64SHong Zhang   if (rank) {
2538f4c0e9e4SHong Zhang     rvalues = work;
2539ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2540f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
25417adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2542f4c0e9e4SHong Zhang       /* process values */
2543f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2544ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2545f4c0e9e4SHong Zhang       }
2546f4c0e9e4SHong Zhang     }
2547ca54ac64SHong Zhang   }
2548f4c0e9e4SHong Zhang 
25491ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2550ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
255124d5174aSHong Zhang   PetscFunctionReturn(0);
255224d5174aSHong Zhang }
25532798e883SHong Zhang 
25542798e883SHong Zhang #undef __FUNCT__
255541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
255641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25572798e883SHong Zhang {
25582798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2559dfbe8321SBarry Smith   PetscErrorCode    ierr;
2560d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25613649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2562ffe4fb16SHong Zhang   Vec               bb1;
25633649974fSBarry Smith   const PetscScalar *b;
2564ffe4fb16SHong Zhang 
2565ffe4fb16SHong Zhang   PetscFunctionBegin;
2566e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2567e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2568ffe4fb16SHong Zhang 
2569a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
257041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2571a2b30743SBarry Smith     PetscFunctionReturn(0);
2572a2b30743SBarry Smith   }
2573a2b30743SBarry Smith 
2574ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2575ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
257641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2577ffe4fb16SHong Zhang       its--;
2578ffe4fb16SHong Zhang     }
2579ffe4fb16SHong Zhang 
2580ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2581ffe4fb16SHong Zhang     while (its--) {
2582ffe4fb16SHong Zhang 
2583ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2584ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2585ffe4fb16SHong Zhang 
2586ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25871ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25881ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2589ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25901ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2591ffe4fb16SHong Zhang 
2592efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2593ffe4fb16SHong Zhang 
2594ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25951ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25963649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2597ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25981ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2599ffe4fb16SHong Zhang 
2600ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2601fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2602ffe4fb16SHong Zhang 
2603ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26041ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2605a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2606ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2607ffe4fb16SHong Zhang 
2608ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2609ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2610ffe4fb16SHong Zhang 
2611ffe4fb16SHong Zhang       /* local diagonal sweep */
261241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2613ffe4fb16SHong Zhang     }
26146bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2615fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
261641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2617fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
261841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2619fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2620fa22f6d0SBarry Smith     Vec               xx1;
2621ace3abfcSBarry Smith     PetscBool         hasop;
262220f1ed55SBarry Smith     const PetscScalar *diag;
2623887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
262420f1ed55SBarry Smith     PetscInt          i,n;
2625fa22f6d0SBarry Smith 
2626fa22f6d0SBarry Smith     if (!mat->xx1) {
2627fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2628fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2629fa22f6d0SBarry Smith     }
2630fa22f6d0SBarry Smith     xx1 = mat->xx1;
2631fa22f6d0SBarry Smith     bb1 = mat->bb1;
2632fa22f6d0SBarry Smith 
263341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2634fa22f6d0SBarry Smith 
2635fa22f6d0SBarry Smith     if (!mat->diag) {
2636effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2637fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2638fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2639fa22f6d0SBarry Smith     }
2640fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2641fa22f6d0SBarry Smith 
2642fa22f6d0SBarry Smith     if (hasop) {
2643fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2644887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
264520f1ed55SBarry Smith     } else {
264620f1ed55SBarry Smith       /*
264720f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
264820f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2649887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
265020f1ed55SBarry Smith       */
265120f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26523649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26533649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
265420f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
265520f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2656887ee2caSBarry Smith       if (omega == 1.0) {
265720f1ed55SBarry Smith         for (i=0; i<n; i++) {
265820f1ed55SBarry Smith           sl[i] = b[i] - diag[i]*x[i];
265920f1ed55SBarry Smith         }
266020f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2661887ee2caSBarry Smith       } else {
2662887ee2caSBarry Smith         for (i=0; i<n; i++) {
2663887ee2caSBarry Smith           sl[i] = b[i] + scale*diag[i]*x[i];
2664887ee2caSBarry Smith         }
2665887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2666887ee2caSBarry Smith       }
266720f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26683649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26693649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
267020f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
267120f1ed55SBarry Smith     }
2672fa22f6d0SBarry Smith 
2673fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2674fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2675fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2676fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2677fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2678fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2679fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2680fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2681fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2682fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2683effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2684fa22f6d0SBarry Smith 
2685fa22f6d0SBarry Smith     /* local sweep */
268641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2687fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2688ffe4fb16SHong Zhang   } else {
2689e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2690ffe4fb16SHong Zhang   }
2691ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2692ffe4fb16SHong Zhang }
2693ffe4fb16SHong Zhang 
2694ffe4fb16SHong Zhang #undef __FUNCT__
269541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
269641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2697ffe4fb16SHong Zhang {
2698ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2699dfbe8321SBarry Smith   PetscErrorCode ierr;
27002798e883SHong Zhang   Vec            lvec1,bb1;
27012798e883SHong Zhang 
27022798e883SHong Zhang   PetscFunctionBegin;
2703e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2704e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27052798e883SHong Zhang 
2706c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
27072798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
270841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27092798e883SHong Zhang       its--;
27102798e883SHong Zhang     }
27112798e883SHong Zhang 
27122798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27132798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27142798e883SHong Zhang     while (its--) {
2715ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27162798e883SHong Zhang 
27172798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27182798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2719efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27202798e883SHong Zhang 
2721ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27222798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2723ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27242798e883SHong Zhang 
27252798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2726efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27272798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27282798e883SHong Zhang 
2729ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27302798e883SHong Zhang 
2731c14dc6b6SHong Zhang       /* diagonal sweep */
273241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27332798e883SHong Zhang     }
27346bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27356bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27366bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27372798e883SHong Zhang   PetscFunctionReturn(0);
27382798e883SHong Zhang }
27392798e883SHong Zhang 
2740dfb205c3SBarry Smith #undef __FUNCT__
2741dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2742dfb205c3SBarry Smith /*@
2743dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2744dfb205c3SBarry Smith          CSR format the local rows.
2745dfb205c3SBarry Smith 
2746dfb205c3SBarry Smith    Collective on MPI_Comm
2747dfb205c3SBarry Smith 
2748dfb205c3SBarry Smith    Input Parameters:
2749dfb205c3SBarry Smith +  comm - MPI communicator
2750dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2751dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2752dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2753dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2754dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2755dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2756dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2757dfb205c3SBarry Smith .   i - row indices
2758dfb205c3SBarry Smith .   j - column indices
2759dfb205c3SBarry Smith -   a - matrix values
2760dfb205c3SBarry Smith 
2761dfb205c3SBarry Smith    Output Parameter:
2762dfb205c3SBarry Smith .   mat - the matrix
2763dfb205c3SBarry Smith 
2764dfb205c3SBarry Smith    Level: intermediate
2765dfb205c3SBarry Smith 
2766dfb205c3SBarry Smith    Notes:
2767dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2768dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2769dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2770dfb205c3SBarry Smith 
2771dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2772dfb205c3SBarry Smith 
2773dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2774dfb205c3SBarry Smith 
2775dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
277669b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2777dfb205c3SBarry Smith @*/
27787087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2779dfb205c3SBarry Smith {
2780dfb205c3SBarry Smith   PetscErrorCode ierr;
2781dfb205c3SBarry Smith 
2782dfb205c3SBarry Smith 
2783dfb205c3SBarry Smith  PetscFunctionBegin;
2784dfb205c3SBarry Smith   if (i[0]) {
2785dfb205c3SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2786dfb205c3SBarry Smith   }
2787dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2788dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2789dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2790dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2791dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2792dfb205c3SBarry Smith   PetscFunctionReturn(0);
2793dfb205c3SBarry Smith }
2794dfb205c3SBarry Smith 
2795dfb205c3SBarry Smith 
2796dfb205c3SBarry Smith #undef __FUNCT__
2797dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2798dfb205c3SBarry Smith /*@C
2799dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2800dfb205c3SBarry Smith    (the default parallel PETSc format).
2801dfb205c3SBarry Smith 
2802dfb205c3SBarry Smith    Collective on MPI_Comm
2803dfb205c3SBarry Smith 
2804dfb205c3SBarry Smith    Input Parameters:
2805dfb205c3SBarry Smith +  A - the matrix
2806dfb205c3SBarry Smith .  bs - the block size
2807dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2808dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2809dfb205c3SBarry Smith -  v - optional values in the matrix
2810dfb205c3SBarry Smith 
2811dfb205c3SBarry Smith    Level: developer
2812dfb205c3SBarry Smith 
2813dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2814dfb205c3SBarry Smith 
281569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2816dfb205c3SBarry Smith @*/
28177087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2818dfb205c3SBarry Smith {
28194ac538c5SBarry Smith   PetscErrorCode ierr;
2820dfb205c3SBarry Smith 
2821dfb205c3SBarry Smith   PetscFunctionBegin;
28224ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2823dfb205c3SBarry Smith   PetscFunctionReturn(0);
2824dfb205c3SBarry Smith }
2825dfb205c3SBarry Smith 
2826dfb205c3SBarry Smith 
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