1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 103a30f8f8cSSatish Balay N = nrow++ - 1; \ 104a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 105a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 106a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 107a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 110a30f8f8cSSatish Balay rp[_i] = bcol; \ 111a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 112a30f8f8cSSatish Balay a_noinsert:; \ 113a30f8f8cSSatish Balay ailen[brow] = nrow; \ 114a30f8f8cSSatish Balay } 115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 116a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 117a30f8f8cSSatish Balay { \ 118a30f8f8cSSatish Balay brow = row/bs; \ 119a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 120a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 121a30f8f8cSSatish Balay bcol = col/bs; \ 122a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 123a30f8f8cSSatish Balay low = 0; high = nrow; \ 124a30f8f8cSSatish Balay while (high-low > 3) { \ 125a30f8f8cSSatish Balay t = (low+high)/2; \ 126a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 127a30f8f8cSSatish Balay else low = t; \ 128a30f8f8cSSatish Balay } \ 129a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 130a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 131a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 132a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 133a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 134a30f8f8cSSatish Balay else *bap = value; \ 135a30f8f8cSSatish Balay goto b_noinsert; \ 136a30f8f8cSSatish Balay } \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 139085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 140421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay b_noinsert:; \ 151a30f8f8cSSatish Balay bilen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #endif 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1564a2ae208SSatish Balay #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 159a30f8f8cSSatish Balay { 160a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 161dfbe8321SBarry Smith PetscErrorCode ierr; 1621302d50aSBarry Smith PetscInt i,N = m*n; 163a30f8f8cSSatish Balay MatScalar *vsingle; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay PetscFunctionBegin; 166a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16705b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 169a30f8f8cSSatish Balay b->setvalueslen = N; 170a30f8f8cSSatish Balay } 171a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 172a30f8f8cSSatish Balay 173a30f8f8cSSatish Balay for (i=0; i<N; i++) { 174a30f8f8cSSatish Balay vsingle[i] = v[i]; 175a30f8f8cSSatish Balay } 176a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 177a30f8f8cSSatish Balay PetscFunctionReturn(0); 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 1804a2ae208SSatish Balay #undef __FUNCT__ 1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 183a30f8f8cSSatish Balay { 184a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 185dfbe8321SBarry Smith PetscErrorCode ierr; 1861302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 187a30f8f8cSSatish Balay MatScalar *vsingle; 188a30f8f8cSSatish Balay 189a30f8f8cSSatish Balay PetscFunctionBegin; 190a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19105b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 193a30f8f8cSSatish Balay b->setvalueslen = N; 194a30f8f8cSSatish Balay } 195a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 196a30f8f8cSSatish Balay for (i=0; i<N; i++) { 197a30f8f8cSSatish Balay vsingle[i] = v[i]; 198a30f8f8cSSatish Balay } 199a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 200a30f8f8cSSatish Balay PetscFunctionReturn(0); 201a30f8f8cSSatish Balay } 202a30f8f8cSSatish Balay #endif 203a30f8f8cSSatish Balay 204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 205a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 206a30f8f8cSSatish Balay */ 2074a2ae208SSatish Balay #undef __FUNCT__ 208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar" 2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 210a30f8f8cSSatish Balay { 211a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 212a30f8f8cSSatish Balay MatScalar value; 213b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 214dfbe8321SBarry Smith PetscErrorCode ierr; 2151302d50aSBarry Smith PetscInt i,j,row,col; 216899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 217899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 218899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 219a30f8f8cSSatish Balay 220a30f8f8cSSatish Balay /* Some Variables required in the macro */ 221a30f8f8cSSatish Balay Mat A = baij->A; 222a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2231302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 224a30f8f8cSSatish Balay MatScalar *aa=a->a; 225a30f8f8cSSatish Balay 226a30f8f8cSSatish Balay Mat B = baij->B; 227a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2281302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 229a30f8f8cSSatish Balay MatScalar *ba=b->a; 230a30f8f8cSSatish Balay 2311302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2321302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 233a30f8f8cSSatish Balay MatScalar *ap,*bap; 234a30f8f8cSSatish Balay 235a30f8f8cSSatish Balay /* for stash */ 236910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 237910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 238a30f8f8cSSatish Balay 239a30f8f8cSSatish Balay PetscFunctionBegin; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay if (!baij->donotstash){ 24259ffdab8SBarry Smith if (n > baij->n_loc) { 24359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 24459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 24559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 24659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 24759ffdab8SBarry Smith baij->n_loc = n; 24859ffdab8SBarry Smith } 24959ffdab8SBarry Smith in_loc = baij->in_loc; 25059ffdab8SBarry Smith v_loc = baij->v_loc; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay for (i=0; i<m; i++) { 254a30f8f8cSSatish Balay if (im[i] < 0) continue; 2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 256899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 257a30f8f8cSSatish Balay #endif 258a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 259a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 260a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 26201b2bd88SHong Zhang if (a->ignore_ltriangular){ 26301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26401b2bd88SHong Zhang } else { 26501b2bd88SHong Zhang SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)"); 26601b2bd88SHong Zhang } 26701b2bd88SHong Zhang } 268a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 269a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 270a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 271a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 272a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 273a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 274a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 275a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 277899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 280a30f8f8cSSatish Balay if (mat->was_assembled) { 281a30f8f8cSSatish Balay if (!baij->colmap) { 282653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 285a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28671730473SSatish Balay col = col - 1; 287a30f8f8cSSatish Balay #else 28871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 289a30f8f8cSSatish Balay #endif 290a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 291a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 292a30f8f8cSSatish Balay col = in[j]; 293a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 294a30f8f8cSSatish Balay B = baij->B; 295a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 296a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 297a30f8f8cSSatish Balay ba=b->a; 29871730473SSatish Balay } else col += in[j]%bs; 299a30f8f8cSSatish Balay } else col = in[j]; 300a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 301a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 302a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay } else { /* off processor entry */ 306a30f8f8cSSatish Balay if (!baij->donotstash) { 307a30f8f8cSSatish Balay n_loc = 0; 308a30f8f8cSSatish Balay for (j=0; j<n; j++){ 309f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 310a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 311a30f8f8cSSatish Balay if (roworiented) { 312a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 313a30f8f8cSSatish Balay } else { 314a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay n_loc++; 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 319a30f8f8cSSatish Balay } 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay PetscFunctionReturn(0); 323a30f8f8cSSatish Balay } 324a30f8f8cSSatish Balay 3254a2ae208SSatish Balay #undef __FUNCT__ 326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 328a30f8f8cSSatish Balay { 3290880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 330f15d580aSBarry Smith const MatScalar *value; 331f15d580aSBarry Smith MatScalar *barray=baij->barray; 3320880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 333dfbe8321SBarry Smith PetscErrorCode ierr; 334899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 335899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 336899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3370880e062SHong Zhang 338a30f8f8cSSatish Balay PetscFunctionBegin; 3390880e062SHong Zhang if(!barray) { 3400880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3410880e062SHong Zhang baij->barray = barray; 3420880e062SHong Zhang } 3430880e062SHong Zhang 3440880e062SHong Zhang if (roworiented) { 3450880e062SHong Zhang stepval = (n-1)*bs; 3460880e062SHong Zhang } else { 3470880e062SHong Zhang stepval = (m-1)*bs; 3480880e062SHong Zhang } 3490880e062SHong Zhang for (i=0; i<m; i++) { 3500880e062SHong Zhang if (im[i] < 0) continue; 3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3530880e062SHong Zhang #endif 3540880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3550880e062SHong Zhang row = im[i] - rstart; 3560880e062SHong Zhang for (j=0; j<n; j++) { 3570880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3580880e062SHong Zhang if ((roworiented) && (n == 1)) { 359f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3600880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 361f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3620880e062SHong Zhang } else { /* Here a copy is required */ 3630880e062SHong Zhang if (roworiented) { 3640880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3650880e062SHong Zhang } else { 3660880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3670880e062SHong Zhang } 3680880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3690880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3700880e062SHong Zhang *barray++ = *value++; 3710880e062SHong Zhang } 3720880e062SHong Zhang } 3730880e062SHong Zhang barray -=bs2; 3740880e062SHong Zhang } 3750880e062SHong Zhang 3760880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3770880e062SHong Zhang col = in[j] - cstart; 3780880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3790880e062SHong Zhang } 3800880e062SHong Zhang else if (in[j] < 0) continue; 3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3830880e062SHong Zhang #endif 3840880e062SHong Zhang else { 3850880e062SHong Zhang if (mat->was_assembled) { 3860880e062SHong Zhang if (!baij->colmap) { 387653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3880880e062SHong Zhang } 3890880e062SHong Zhang 3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3921302d50aSBarry Smith { PetscInt data; 3930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3940880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3950880e062SHong Zhang } 3960880e062SHong Zhang #else 3970880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3980880e062SHong Zhang #endif 3990880e062SHong Zhang #endif 4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4020880e062SHong Zhang col = (col - 1)/bs; 4030880e062SHong Zhang #else 4040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4050880e062SHong Zhang #endif 4060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4070880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4080880e062SHong Zhang col = in[j]; 4090880e062SHong Zhang } 4100880e062SHong Zhang } 4110880e062SHong Zhang else col = in[j]; 412e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4130880e062SHong Zhang } 4140880e062SHong Zhang } 4150880e062SHong Zhang } else { 4160880e062SHong Zhang if (!baij->donotstash) { 4170880e062SHong Zhang if (roworiented) { 4180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4190880e062SHong Zhang } else { 4200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4210880e062SHong Zhang } 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang } 4250880e062SHong Zhang PetscFunctionReturn(0); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay 4284a2ae208SSatish Balay #undef __FUNCT__ 4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 431a30f8f8cSSatish Balay { 432f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4336849ba73SBarry Smith PetscErrorCode ierr; 434899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 435899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 436a30f8f8cSSatish Balay 437a30f8f8cSSatish Balay PetscFunctionBegin; 438a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43977431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 440899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 441a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 442a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 443a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44477431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 445899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 446a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 447a30f8f8cSSatish Balay col = idxn[j] - bscstart; 448c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 449a30f8f8cSSatish Balay } else { 450a30f8f8cSSatish Balay if (!baij->colmap) { 451653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 452a30f8f8cSSatish Balay } 453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 454a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 455a30f8f8cSSatish Balay data --; 456a30f8f8cSSatish Balay #else 457a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 458a30f8f8cSSatish Balay #endif 459a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 460a30f8f8cSSatish Balay else { 461a30f8f8cSSatish Balay col = data + idxn[j]%bs; 462e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 463a30f8f8cSSatish Balay } 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } 466a30f8f8cSSatish Balay } else { 46729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay } 470a30f8f8cSSatish Balay PetscFunctionReturn(0); 471a30f8f8cSSatish Balay } 472a30f8f8cSSatish Balay 4734a2ae208SSatish Balay #undef __FUNCT__ 4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 476a30f8f8cSSatish Balay { 477a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 478dfbe8321SBarry Smith PetscErrorCode ierr; 479a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 480a30f8f8cSSatish Balay 481a30f8f8cSSatish Balay PetscFunctionBegin; 482a30f8f8cSSatish Balay if (baij->size == 1) { 483a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 484a30f8f8cSSatish Balay } else { 485a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 486f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 487a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 488a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 489a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 490a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 491d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 492a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 493a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4940b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4950b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4960b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4970b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 498899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 499899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 5000b8dc8d2SHong Zhang MatScalar *v; 5010b8dc8d2SHong Zhang 502899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 503899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 504899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5050b8dc8d2SHong Zhang /* Amat */ 5060b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5070b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5080b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5090b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5100b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5110b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5120b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5130b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5140b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5150b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5160b8dc8d2SHong Zhang /* non-diagonal block */ 5170b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5180b8dc8d2SHong Zhang } 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang } 5220b8dc8d2SHong Zhang /* Bmat */ 5230b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5240b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5250b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5260b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5270b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5280b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5290b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5300b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5310b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5320b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5330b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5340b8dc8d2SHong Zhang } 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang } 538899cda47SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5390b8dc8d2SHong Zhang *norm = 0.0; 540899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5410b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5420b8dc8d2SHong Zhang } 5430b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 544a30f8f8cSSatish Balay } else { 54529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay PetscFunctionReturn(0); 549a30f8f8cSSatish Balay } 550a30f8f8cSSatish Balay 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 556dfbe8321SBarry Smith PetscErrorCode ierr; 5571302d50aSBarry Smith PetscInt nstash,reallocs; 558a30f8f8cSSatish Balay InsertMode addv; 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay PetscFunctionBegin; 561a30f8f8cSSatish Balay if (baij->donotstash) { 562a30f8f8cSSatish Balay PetscFunctionReturn(0); 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 566a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 567a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 571a30f8f8cSSatish Balay 572899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 573899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 575ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 576a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 577ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 578a30f8f8cSSatish Balay PetscFunctionReturn(0); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay 5814a2ae208SSatish Balay #undef __FUNCT__ 5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 584a30f8f8cSSatish Balay { 585a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 586a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5876849ba73SBarry Smith PetscErrorCode ierr; 58813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5891302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 59013f74950SBarry Smith PetscMPIInt n; 591a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 592a30f8f8cSSatish Balay MatScalar *val; 593a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 594a30f8f8cSSatish Balay 59591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 596a30f8f8cSSatish Balay PetscFunctionBegin; 597a30f8f8cSSatish Balay 598a30f8f8cSSatish Balay if (!baij->donotstash) { 599a30f8f8cSSatish Balay while (1) { 600a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 601a30f8f8cSSatish Balay if (!flg) break; 602a30f8f8cSSatish Balay 603a30f8f8cSSatish Balay for (i=0; i<n;) { 604a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 605a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 606a30f8f8cSSatish Balay if (j < n) ncols = j-i; 607a30f8f8cSSatish Balay else ncols = n-i; 608a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 609a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 610a30f8f8cSSatish Balay i = j; 611a30f8f8cSSatish Balay } 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 614a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 615a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 616a30f8f8cSSatish Balay restore the original flags */ 617a30f8f8cSSatish Balay r1 = baij->roworiented; 618a30f8f8cSSatish Balay r2 = a->roworiented; 61991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 620a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 621a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 62291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 623a30f8f8cSSatish Balay while (1) { 624a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 625a30f8f8cSSatish Balay if (!flg) break; 626a30f8f8cSSatish Balay 627a30f8f8cSSatish Balay for (i=0; i<n;) { 628a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 629a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 630a30f8f8cSSatish Balay if (j < n) ncols = j-i; 631a30f8f8cSSatish Balay else ncols = n-i; 632a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 633a30f8f8cSSatish Balay i = j; 634a30f8f8cSSatish Balay } 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 637a30f8f8cSSatish Balay baij->roworiented = r1; 638a30f8f8cSSatish Balay a->roworiented = r2; 63991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 643a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 646a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 647a30f8f8cSSatish Balay /* 648a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 649a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 650a30f8f8cSSatish Balay */ 651a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 652a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 653a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 654c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 660a30f8f8cSSatish Balay } 66191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 662a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 663a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 664a30f8f8cSSatish Balay 665a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 666a30f8f8cSSatish Balay baij->rowvalues = 0; 6675222a1afSHong Zhang 668a30f8f8cSSatish Balay PetscFunctionReturn(0); 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay 671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 6724a2ae208SSatish Balay #undef __FUNCT__ 6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6791302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68032077d6dSBarry Smith PetscTruth iascii,isdraw; 681b0a32e0cSBarry Smith PetscViewer sviewer; 682f3ef73ceSBarry Smith PetscViewerFormat format; 683a30f8f8cSSatish Balay 684a30f8f8cSSatish Balay PetscFunctionBegin; 68532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 686fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68732077d6dSBarry Smith if (iascii) { 688b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 690a30f8f8cSSatish Balay MatInfo info; 691a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 694899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 695899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 701a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 702a30f8f8cSSatish Balay PetscFunctionReturn(0); 703fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 705a30f8f8cSSatish Balay PetscFunctionReturn(0); 706c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 707c1490034SHong Zhang PetscFunctionReturn(0); 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay 711a30f8f8cSSatish Balay if (isdraw) { 712b0a32e0cSBarry Smith PetscDraw draw; 713a30f8f8cSSatish Balay PetscTruth isnull; 714b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay 718a30f8f8cSSatish Balay if (size == 1) { 719e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay } else { 722a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 723a30f8f8cSSatish Balay Mat A; 72465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 726899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 727a30f8f8cSSatish Balay MatScalar *a; 728a30f8f8cSSatish Balay 729f204ca49SKris Buschelman /* Should this be the same type as mat? */ 730f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 731a30f8f8cSSatish Balay if (!rank) { 732f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 733a30f8f8cSSatish Balay } else { 734f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 735a30f8f8cSSatish Balay } 736f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 737899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 739a30f8f8cSSatish Balay 740a30f8f8cSSatish Balay /* copy over the A part */ 74165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 742a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7431302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 746e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 747a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 748a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 749e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 750a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 751a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 752a30f8f8cSSatish Balay col++; a += bs; 753a30f8f8cSSatish Balay } 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay /* copy over the B part */ 75765d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75865d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 759a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 760e9f7bc9eSHong Zhang 761e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 762a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 763a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 764a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 765a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 766799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 767a30f8f8cSSatish Balay col++; a += bs; 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 773a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 774a30f8f8cSSatish Balay /* 775a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 776b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 777a30f8f8cSSatish Balay */ 778b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77965d70643SHong Zhang if (!rank) { 780e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 781a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 782a30f8f8cSSatish Balay } 783b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 784a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 785a30f8f8cSSatish Balay } 786a30f8f8cSSatish Balay PetscFunctionReturn(0); 787a30f8f8cSSatish Balay } 788a30f8f8cSSatish Balay 7894a2ae208SSatish Balay #undef __FUNCT__ 7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 791dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 792a30f8f8cSSatish Balay { 793dfbe8321SBarry Smith PetscErrorCode ierr; 79432077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 795a30f8f8cSSatish Balay 796a30f8f8cSSatish Balay PetscFunctionBegin; 79732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 798fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 799b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 800fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80132077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 802a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 803a30f8f8cSSatish Balay } else { 8041302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 805a30f8f8cSSatish Balay } 806a30f8f8cSSatish Balay PetscFunctionReturn(0); 807a30f8f8cSSatish Balay } 808a30f8f8cSSatish Balay 8094a2ae208SSatish Balay #undef __FUNCT__ 8104a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 811dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 812a30f8f8cSSatish Balay { 813a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 815a30f8f8cSSatish Balay 816a30f8f8cSSatish Balay PetscFunctionBegin; 817a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 818899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 819a30f8f8cSSatish Balay #endif 820a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 822a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 824a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 825a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 826a30f8f8cSSatish Balay #else 82705b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 828a30f8f8cSSatish Balay #endif 82905b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 830a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 831a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83240781036SHong Zhang if (baij->slvec0) { 83340781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83440781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83540781036SHong Zhang } 83640781036SHong Zhang if (baij->slvec1) { 83740781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83840781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83940781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 84040781036SHong Zhang } 84140781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 84205b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 845a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84605b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 847a30f8f8cSSatish Balay #endif 84859ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 84959ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 850899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 851a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 852901853e0SKris Buschelman 853*dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 854901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 855901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 856901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 857901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 858a30f8f8cSSatish Balay PetscFunctionReturn(0); 859a30f8f8cSSatish Balay } 860a30f8f8cSSatish Balay 8614a2ae208SSatish Balay #undef __FUNCT__ 862a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 863dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 864a9d4b620SHong Zhang { 865a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 866dfbe8321SBarry Smith PetscErrorCode ierr; 867899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 868a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 869a9d4b620SHong Zhang 870a9d4b620SHong Zhang PetscFunctionBegin; 871a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 872899cda47SBarry Smith if (nt != A->cmap.n) { 873a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 874a9d4b620SHong Zhang } 875a9d4b620SHong Zhang 876a9d4b620SHong Zhang /* diagonal part */ 877a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8782dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 879a9d4b620SHong Zhang 880a9d4b620SHong Zhang /* subdiagonal part */ 881a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 882899cda47SBarry Smith CHKMEMQ; 883a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8841ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8851ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 886899cda47SBarry Smith CHKMEMQ; 887a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 888899cda47SBarry Smith CHKMEMQ; 8891ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 890a9d4b620SHong Zhang 891899cda47SBarry Smith CHKMEMQ; 892a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 893899cda47SBarry Smith CHKMEMQ; 8941ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 895899cda47SBarry Smith CHKMEMQ; 896a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 897899cda47SBarry Smith CHKMEMQ; 898a9d4b620SHong Zhang /* supperdiagonal part */ 899a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 900899cda47SBarry Smith CHKMEMQ; 901a9d4b620SHong Zhang PetscFunctionReturn(0); 902a9d4b620SHong Zhang } 903a9d4b620SHong Zhang 904a9d4b620SHong Zhang #undef __FUNCT__ 90540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 906dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 907a30f8f8cSSatish Balay { 908a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 909dfbe8321SBarry Smith PetscErrorCode ierr; 9101302d50aSBarry Smith PetscInt nt; 911a30f8f8cSSatish Balay 912a30f8f8cSSatish Balay PetscFunctionBegin; 913a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 914899cda47SBarry Smith if (nt != A->cmap.n) { 91529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 916a30f8f8cSSatish Balay } 917a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 918899cda47SBarry Smith if (nt != A->rmap.N) { 91929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 920a30f8f8cSSatish Balay } 92165d70643SHong Zhang 922b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 923b941877fSHong Zhang /* do diagonal part */ 924b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 925b941877fSHong Zhang /* do supperdiagonal part */ 926b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 927b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 928b941877fSHong Zhang /* do subdiagonal part */ 929b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 930b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 931b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 93265d70643SHong Zhang 933a30f8f8cSSatish Balay PetscFunctionReturn(0); 934a30f8f8cSSatish Balay } 935a30f8f8cSSatish Balay 9364a2ae208SSatish Balay #undef __FUNCT__ 9374a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 938dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 939a30f8f8cSSatish Balay { 940de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 941dfbe8321SBarry Smith PetscErrorCode ierr; 942899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 943a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 944a9d4b620SHong Zhang 945a9d4b620SHong Zhang PetscFunctionBegin; 946a9d4b620SHong Zhang /* 94756faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 94856faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 949a9d4b620SHong Zhang */ 950a9d4b620SHong Zhang /* diagonal part */ 951a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9522dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 953a9d4b620SHong Zhang 954a9d4b620SHong Zhang /* subdiagonal part */ 955a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 956a9d4b620SHong Zhang 957a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9581ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9591ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 960a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9611ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 962a9d4b620SHong Zhang 963a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9641ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 965a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 966a9d4b620SHong Zhang 967a9d4b620SHong Zhang /* supperdiagonal part */ 968a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 969a9d4b620SHong Zhang 970a9d4b620SHong Zhang PetscFunctionReturn(0); 971a9d4b620SHong Zhang } 972a9d4b620SHong Zhang 973a9d4b620SHong Zhang #undef __FUNCT__ 974a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 975dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 976a9d4b620SHong Zhang { 977a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 978dfbe8321SBarry Smith PetscErrorCode ierr; 979a30f8f8cSSatish Balay 980a30f8f8cSSatish Balay PetscFunctionBegin; 981b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 982b941877fSHong Zhang /* do diagonal part */ 983b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 984b941877fSHong Zhang /* do supperdiagonal part */ 985b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 986de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 987de8b6608SHong Zhang 988b941877fSHong Zhang /* do subdiagonal part */ 989a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 990a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 991a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 992aa482183SHong Zhang 993a30f8f8cSSatish Balay PetscFunctionReturn(0); 994a30f8f8cSSatish Balay } 995a30f8f8cSSatish Balay 996a30f8f8cSSatish Balay /* 997a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 998a30f8f8cSSatish Balay diagonal block 999a30f8f8cSSatish Balay */ 10004a2ae208SSatish Balay #undef __FUNCT__ 10014a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1002dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1003a30f8f8cSSatish Balay { 1004a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1005dfbe8321SBarry Smith PetscErrorCode ierr; 1006a30f8f8cSSatish Balay 1007a30f8f8cSSatish Balay PetscFunctionBegin; 1008899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1009a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1010a30f8f8cSSatish Balay PetscFunctionReturn(0); 1011a30f8f8cSSatish Balay } 1012a30f8f8cSSatish Balay 10134a2ae208SSatish Balay #undef __FUNCT__ 10144a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1015f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1016a30f8f8cSSatish Balay { 1017a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1018dfbe8321SBarry Smith PetscErrorCode ierr; 1019a30f8f8cSSatish Balay 1020a30f8f8cSSatish Balay PetscFunctionBegin; 1021f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1022f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1023a30f8f8cSSatish Balay PetscFunctionReturn(0); 1024a30f8f8cSSatish Balay } 1025a30f8f8cSSatish Balay 10264a2ae208SSatish Balay #undef __FUNCT__ 10274a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10281302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1029a30f8f8cSSatish Balay { 1030d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1031d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1032d0d4cfc2SHong Zhang PetscErrorCode ierr; 1033899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1034899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1035899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1036d0d4cfc2SHong Zhang 1037a30f8f8cSSatish Balay PetscFunctionBegin; 1038d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1039d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1040d0d4cfc2SHong Zhang 1041d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1042d0d4cfc2SHong Zhang /* 1043d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1044d0d4cfc2SHong Zhang */ 1045d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1046d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1047d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1048d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1049d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1050d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1051d0d4cfc2SHong Zhang } 1052d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1053d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1054d0d4cfc2SHong Zhang } 1055d0d4cfc2SHong Zhang 1056d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1057d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1058d0d4cfc2SHong Zhang 1059d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1060d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1061d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1062d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1063d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1064d0d4cfc2SHong Zhang nztot = nzA + nzB; 1065d0d4cfc2SHong Zhang 1066d0d4cfc2SHong Zhang cmap = mat->garray; 1067d0d4cfc2SHong Zhang if (v || idx) { 1068d0d4cfc2SHong Zhang if (nztot) { 1069d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1070d0d4cfc2SHong Zhang PetscInt imark = -1; 1071d0d4cfc2SHong Zhang if (v) { 1072d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1073d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1074d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1075d0d4cfc2SHong Zhang else break; 1076d0d4cfc2SHong Zhang } 1077d0d4cfc2SHong Zhang imark = i; 1078d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1079d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1080d0d4cfc2SHong Zhang } 1081d0d4cfc2SHong Zhang if (idx) { 1082d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1083d0d4cfc2SHong Zhang if (imark > -1) { 1084d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1085d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1086d0d4cfc2SHong Zhang } 1087d0d4cfc2SHong Zhang } else { 1088d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1089d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1090d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1091d0d4cfc2SHong Zhang else break; 1092d0d4cfc2SHong Zhang } 1093d0d4cfc2SHong Zhang imark = i; 1094d0d4cfc2SHong Zhang } 1095d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1096d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1097d0d4cfc2SHong Zhang } 1098d0d4cfc2SHong Zhang } else { 1099d0d4cfc2SHong Zhang if (idx) *idx = 0; 1100d0d4cfc2SHong Zhang if (v) *v = 0; 1101d0d4cfc2SHong Zhang } 1102d0d4cfc2SHong Zhang } 1103d0d4cfc2SHong Zhang *nz = nztot; 1104d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1105d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1106a30f8f8cSSatish Balay PetscFunctionReturn(0); 1107a30f8f8cSSatish Balay } 1108a30f8f8cSSatish Balay 11094a2ae208SSatish Balay #undef __FUNCT__ 11104a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11111302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1112a30f8f8cSSatish Balay { 1113a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1114a30f8f8cSSatish Balay 1115a30f8f8cSSatish Balay PetscFunctionBegin; 1116abc0a331SBarry Smith if (!baij->getrowactive) { 1117abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1118a30f8f8cSSatish Balay } 1119a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1120a30f8f8cSSatish Balay PetscFunctionReturn(0); 1121a30f8f8cSSatish Balay } 1122a30f8f8cSSatish Balay 11234a2ae208SSatish Balay #undef __FUNCT__ 1124d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1125d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1126d0d4cfc2SHong Zhang { 1127d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1129d0d4cfc2SHong Zhang 1130d0d4cfc2SHong Zhang PetscFunctionBegin; 1131d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1132d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1133d0d4cfc2SHong Zhang } 1134d0d4cfc2SHong Zhang #undef __FUNCT__ 1135d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1136d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1137d0d4cfc2SHong Zhang { 1138d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1139d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1140d0d4cfc2SHong Zhang 1141d0d4cfc2SHong Zhang PetscFunctionBegin; 1142d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1143d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1144d0d4cfc2SHong Zhang } 1145d0d4cfc2SHong Zhang 1146d0d4cfc2SHong Zhang #undef __FUNCT__ 114799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 114999cafbc1SBarry Smith { 115099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115199cafbc1SBarry Smith PetscErrorCode ierr; 115299cafbc1SBarry Smith 115399cafbc1SBarry Smith PetscFunctionBegin; 115499cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115599cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115699cafbc1SBarry Smith PetscFunctionReturn(0); 115799cafbc1SBarry Smith } 115899cafbc1SBarry Smith 115999cafbc1SBarry Smith #undef __FUNCT__ 116099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 116199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 116299cafbc1SBarry Smith { 116399cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 116499cafbc1SBarry Smith PetscErrorCode ierr; 116599cafbc1SBarry Smith 116699cafbc1SBarry Smith PetscFunctionBegin; 116799cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116899cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 116999cafbc1SBarry Smith PetscFunctionReturn(0); 117099cafbc1SBarry Smith } 117199cafbc1SBarry Smith 117299cafbc1SBarry Smith #undef __FUNCT__ 11734a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1174dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1175a30f8f8cSSatish Balay { 1176a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1177dfbe8321SBarry Smith PetscErrorCode ierr; 1178a30f8f8cSSatish Balay 1179a30f8f8cSSatish Balay PetscFunctionBegin; 1180a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1181a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1182a30f8f8cSSatish Balay PetscFunctionReturn(0); 1183a30f8f8cSSatish Balay } 1184a30f8f8cSSatish Balay 11854a2ae208SSatish Balay #undef __FUNCT__ 11864a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1187dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1188a30f8f8cSSatish Balay { 1189a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1190a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1191dfbe8321SBarry Smith PetscErrorCode ierr; 1192a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1193a30f8f8cSSatish Balay 1194a30f8f8cSSatish Balay PetscFunctionBegin; 1195899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1196a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1197a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1198a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1199a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1200a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1201a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1202a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1203a30f8f8cSSatish Balay info->nz_used = isend[0]; 1204a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1205a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1206a30f8f8cSSatish Balay info->memory = isend[3]; 1207a30f8f8cSSatish Balay info->mallocs = isend[4]; 1208a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1209d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1210a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1211a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1212a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1213a30f8f8cSSatish Balay info->memory = irecv[3]; 1214a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1215a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1216d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1217a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1218a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1219a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1220a30f8f8cSSatish Balay info->memory = irecv[3]; 1221a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1222a30f8f8cSSatish Balay } else { 122377431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1224a30f8f8cSSatish Balay } 1225899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1226899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1227899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1228899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1229a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1230a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1231a30f8f8cSSatish Balay info->factor_mallocs = 0; 1232a30f8f8cSSatish Balay PetscFunctionReturn(0); 1233a30f8f8cSSatish Balay } 1234a30f8f8cSSatish Balay 12354a2ae208SSatish Balay #undef __FUNCT__ 12364a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1237dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1238a30f8f8cSSatish Balay { 1239a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1240d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1241dfbe8321SBarry Smith PetscErrorCode ierr; 1242a30f8f8cSSatish Balay 1243a30f8f8cSSatish Balay PetscFunctionBegin; 1244e98b92d7SKris Buschelman switch (op) { 1245e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1246e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1247e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1248e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1249e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1250e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1251e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1252a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1253a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1254e98b92d7SKris Buschelman break; 1255e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1256a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1257a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1258a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1259e98b92d7SKris Buschelman break; 1260e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1261e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1262e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1263290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1264e98b92d7SKris Buschelman break; 1265e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1266a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1267a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1268a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1269e98b92d7SKris Buschelman break; 1270e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1271a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1272e98b92d7SKris Buschelman break; 1273e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 127429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1275e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1276a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1277e98b92d7SKris Buschelman break; 12789a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12799a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12809a4540c5SBarry Smith case MAT_HERMITIAN: 12819a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 128277e54ba9SKris Buschelman case MAT_SYMMETRIC: 128377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12849a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12859a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12869a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 1287290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 128877e54ba9SKris Buschelman break; 1289d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1290d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_TRUE; 1291d0d4cfc2SHong Zhang break; 1292d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1293d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_FALSE; 1294d0d4cfc2SHong Zhang break; 1295d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1296d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1297d0d4cfc2SHong Zhang break; 1298e98b92d7SKris Buschelman default: 1299ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1300a30f8f8cSSatish Balay } 1301a30f8f8cSSatish Balay PetscFunctionReturn(0); 1302a30f8f8cSSatish Balay } 1303a30f8f8cSSatish Balay 13044a2ae208SSatish Balay #undef __FUNCT__ 13058115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1306dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1307a30f8f8cSSatish Balay { 1308dfbe8321SBarry Smith PetscErrorCode ierr; 1309a30f8f8cSSatish Balay PetscFunctionBegin; 1310999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13118115998fSBarry Smith PetscFunctionReturn(0); 1312a30f8f8cSSatish Balay } 1313a30f8f8cSSatish Balay 13144a2ae208SSatish Balay #undef __FUNCT__ 13154a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1316dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1317a30f8f8cSSatish Balay { 1318a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1319a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1320dfbe8321SBarry Smith PetscErrorCode ierr; 13215e90f9d9SHong Zhang PetscInt nv,m,n; 1322b3bf805bSHong Zhang PetscTruth flg; 1323a30f8f8cSSatish Balay 1324a30f8f8cSSatish Balay PetscFunctionBegin; 1325a30f8f8cSSatish Balay if (ll != rr){ 1326b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1327b3bf805bSHong Zhang if (!flg) 132829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1329a30f8f8cSSatish Balay } 1330b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1331b3bf805bSHong Zhang 13325e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13335e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1334b3bf805bSHong Zhang 13355e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13365e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13375e90f9d9SHong Zhang 1338a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 13395e90f9d9SHong Zhang 13405e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1341a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13425e90f9d9SHong Zhang 13435e90f9d9SHong Zhang /* scale the diagonal part */ 1344a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1345a30f8f8cSSatish Balay 13465e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1347a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1348a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1349a30f8f8cSSatish Balay PetscFunctionReturn(0); 1350a30f8f8cSSatish Balay } 1351a30f8f8cSSatish Balay 13524a2ae208SSatish Balay #undef __FUNCT__ 13534a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1354dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1355a30f8f8cSSatish Balay { 1356f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1357dfbe8321SBarry Smith PetscErrorCode ierr; 1358a30f8f8cSSatish Balay 1359a30f8f8cSSatish Balay PetscFunctionBegin; 1360a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1361a30f8f8cSSatish Balay PetscFunctionReturn(0); 1362a30f8f8cSSatish Balay } 1363a30f8f8cSSatish Balay 13646849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1365a30f8f8cSSatish Balay 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1369a30f8f8cSSatish Balay { 1370a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1371a30f8f8cSSatish Balay Mat a,b,c,d; 1372a30f8f8cSSatish Balay PetscTruth flg; 1373dfbe8321SBarry Smith PetscErrorCode ierr; 1374a30f8f8cSSatish Balay 1375a30f8f8cSSatish Balay PetscFunctionBegin; 1376a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1377a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1378a30f8f8cSSatish Balay 1379a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1380abc0a331SBarry Smith if (flg) { 1381a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1382a30f8f8cSSatish Balay } 1383a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1384a30f8f8cSSatish Balay PetscFunctionReturn(0); 1385a30f8f8cSSatish Balay } 1386a30f8f8cSSatish Balay 13874a2ae208SSatish Balay #undef __FUNCT__ 13883c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13893c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13903c896bc6SHong Zhang { 13913c896bc6SHong Zhang PetscErrorCode ierr; 13923c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13933c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13943c896bc6SHong Zhang 13953c896bc6SHong Zhang PetscFunctionBegin; 13963c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13973c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1398d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13993c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1400d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14013c896bc6SHong Zhang } else { 14023c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14033c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14043c896bc6SHong Zhang } 14053c896bc6SHong Zhang PetscFunctionReturn(0); 14063c896bc6SHong Zhang } 14073c896bc6SHong Zhang 14083c896bc6SHong Zhang #undef __FUNCT__ 14094a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1410dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1411273d9f13SBarry Smith { 1412dfbe8321SBarry Smith PetscErrorCode ierr; 1413273d9f13SBarry Smith 1414273d9f13SBarry Smith PetscFunctionBegin; 14157edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1416273d9f13SBarry Smith PetscFunctionReturn(0); 1417273d9f13SBarry Smith } 1418a5e6ed63SBarry Smith 14194fe895cdSHong Zhang #include "petscblaslapack.h" 14204fe895cdSHong Zhang #undef __FUNCT__ 14214fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14224fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14234fe895cdSHong Zhang { 14244fe895cdSHong Zhang PetscErrorCode ierr; 14254fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14264fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14274fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14284fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14294fe895cdSHong Zhang 14304fe895cdSHong Zhang PetscFunctionBegin; 14314fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14324fe895cdSHong Zhang PetscScalar alpha = a; 14334fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14344fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14354fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14364fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14374fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14384fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14394fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14404fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14414fe895cdSHong Zhang } else { 1442d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14434fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1444d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14454fe895cdSHong Zhang } 14464fe895cdSHong Zhang PetscFunctionReturn(0); 14474fe895cdSHong Zhang } 14484fe895cdSHong Zhang 1449a5e6ed63SBarry Smith #undef __FUNCT__ 1450a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14511302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1452a5e6ed63SBarry Smith { 14536849ba73SBarry Smith PetscErrorCode ierr; 14541302d50aSBarry Smith PetscInt i; 1455a5e6ed63SBarry Smith PetscTruth flg; 1456a5e6ed63SBarry Smith 14576849ba73SBarry Smith PetscFunctionBegin; 1458a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1459a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1460a5e6ed63SBarry Smith if (!flg) { 14611302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1462a5e6ed63SBarry Smith } 1463a5e6ed63SBarry Smith } 1464a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1465a5e6ed63SBarry Smith PetscFunctionReturn(0); 1466a5e6ed63SBarry Smith } 1467a5e6ed63SBarry Smith 1468a5e6ed63SBarry Smith 1469a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1470a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1471a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1472a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1473a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1474a9d4b620SHong Zhang MatMult_MPISBAIJ, 147597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1476431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1477431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 148197304618SKris Buschelman /*10*/ 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 14842798e883SHong Zhang MatRelax_MPISBAIJ, 1485a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 148697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1487a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1488a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1489a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1490a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 149197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1492a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1495a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1496dcf5cc72SBarry Smith /*25*/ 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 150197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1502b5df2d14SHong Zhang 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 150697304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 15114fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1512a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1513d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1514a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15153c896bc6SHong Zhang MatCopy_MPISBAIJ, 15168c07d4e3SBarry Smith /*45*/ 0, 1517a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1518a30f8f8cSSatish Balay 0, 1519a30f8f8cSSatish Balay 0, 1520a30f8f8cSSatish Balay 0, 1521521d7252SBarry Smith /*50*/ 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 152697304618SKris Buschelman /*55*/ 0, 1527a30f8f8cSSatish Balay 0, 1528a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 153197304618SKris Buschelman /*60*/ 0, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay 0, 1534357abbc8SBarry Smith 0, 153524d5174aSHong Zhang 0, 153697304618SKris Buschelman /*65*/ 0, 153724d5174aSHong Zhang 0, 153824d5174aSHong Zhang 0, 153924d5174aSHong Zhang 0, 154024d5174aSHong Zhang 0, 154197304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 154224d5174aSHong Zhang 0, 154397304618SKris Buschelman 0, 154497304618SKris Buschelman 0, 154597304618SKris Buschelman 0, 154697304618SKris Buschelman /*75*/ 0, 154797304618SKris Buschelman 0, 154897304618SKris Buschelman 0, 154997304618SKris Buschelman 0, 155097304618SKris Buschelman 0, 155197304618SKris Buschelman /*80*/ 0, 155297304618SKris Buschelman 0, 155397304618SKris Buschelman 0, 155497304618SKris Buschelman 0, 1555865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1556865e5f61SKris Buschelman /*85*/ 0, 1557865e5f61SKris Buschelman 0, 1558865e5f61SKris Buschelman 0, 1559865e5f61SKris Buschelman 0, 1560865e5f61SKris Buschelman 0, 1561865e5f61SKris Buschelman /*90*/ 0, 1562865e5f61SKris Buschelman 0, 1563865e5f61SKris Buschelman 0, 1564865e5f61SKris Buschelman 0, 1565865e5f61SKris Buschelman 0, 1566865e5f61SKris Buschelman /*95*/ 0, 1567865e5f61SKris Buschelman 0, 1568865e5f61SKris Buschelman 0, 156999cafbc1SBarry Smith 0, 157099cafbc1SBarry Smith 0, 157199cafbc1SBarry Smith /*100*/0, 157299cafbc1SBarry Smith 0, 157399cafbc1SBarry Smith 0, 157499cafbc1SBarry Smith 0, 157599cafbc1SBarry Smith 0, 157699cafbc1SBarry Smith /*105*/0, 157799cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1578d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1579d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1580d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 158199cafbc1SBarry Smith }; 1582a30f8f8cSSatish Balay 1583a30f8f8cSSatish Balay 1584a30f8f8cSSatish Balay EXTERN_C_BEGIN 15854a2ae208SSatish Balay #undef __FUNCT__ 15864a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1587be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1588a30f8f8cSSatish Balay { 1589a30f8f8cSSatish Balay PetscFunctionBegin; 1590a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1591a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1592a30f8f8cSSatish Balay PetscFunctionReturn(0); 1593a30f8f8cSSatish Balay } 1594a30f8f8cSSatish Balay EXTERN_C_END 1595a30f8f8cSSatish Balay 1596273d9f13SBarry Smith EXTERN_C_BEGIN 15974a2ae208SSatish Balay #undef __FUNCT__ 1598a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1599be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1600a23d5eceSKris Buschelman { 1601a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1602dfbe8321SBarry Smith PetscErrorCode ierr; 16031302d50aSBarry Smith PetscInt i,mbs,Mbs; 1604a23d5eceSKris Buschelman 1605a23d5eceSKris Buschelman PetscFunctionBegin; 160677925062SSatish Balay ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 16078c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 16088c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1609a23d5eceSKris Buschelman 1610a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1611a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1612a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 161377431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 161477431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1615899cda47SBarry Smith 1616899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 1617899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr); 1618899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr); 1619899cda47SBarry Smith 1620a23d5eceSKris Buschelman if (d_nnz) { 1621899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 162277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1623a23d5eceSKris Buschelman } 1624a23d5eceSKris Buschelman } 1625a23d5eceSKris Buschelman if (o_nnz) { 1626899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 162777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1628a23d5eceSKris Buschelman } 1629a23d5eceSKris Buschelman } 1630a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1631a23d5eceSKris Buschelman 1632a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1633899cda47SBarry Smith mbs = B->rmap.n/bs; 1634899cda47SBarry Smith Mbs = B->rmap.N/bs; 1635899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1636899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1637a23d5eceSKris Buschelman } 1638a23d5eceSKris Buschelman 1639899cda47SBarry Smith B->rmap.bs = bs; 1640a23d5eceSKris Buschelman b->bs2 = bs*bs; 1641a23d5eceSKris Buschelman b->mbs = mbs; 1642a23d5eceSKris Buschelman b->nbs = mbs; 1643a23d5eceSKris Buschelman b->Mbs = Mbs; 1644a23d5eceSKris Buschelman b->Nbs = Mbs; 1645a23d5eceSKris Buschelman 1646a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1647899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1648a23d5eceSKris Buschelman } 1649899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1650899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1651a23d5eceSKris Buschelman 1652899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1653899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1654a23d5eceSKris Buschelman 1655f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1656899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16579c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1658c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 165952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16609c097c71SKris Buschelman 1661f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1662899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16634aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1664589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 166552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1666a23d5eceSKris Buschelman 1667a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1668a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1669a23d5eceSKris Buschelman 1670a23d5eceSKris Buschelman PetscFunctionReturn(0); 1671a23d5eceSKris Buschelman } 1672a23d5eceSKris Buschelman EXTERN_C_END 1673a23d5eceSKris Buschelman 16740bad9183SKris Buschelman /*MC 1675fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16760bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16770bad9183SKris Buschelman 16780bad9183SKris Buschelman Options Database Keys: 16790bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16800bad9183SKris Buschelman 16810bad9183SKris Buschelman Level: beginner 16820bad9183SKris Buschelman 16830bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16840bad9183SKris Buschelman M*/ 16850bad9183SKris Buschelman 1686a23d5eceSKris Buschelman EXTERN_C_BEGIN 1687a23d5eceSKris Buschelman #undef __FUNCT__ 16884a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1689be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1690b5df2d14SHong Zhang { 1691b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1692dfbe8321SBarry Smith PetscErrorCode ierr; 1693b5df2d14SHong Zhang PetscTruth flg; 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang PetscFunctionBegin; 1696b5df2d14SHong Zhang 1697b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1698b0a32e0cSBarry Smith B->data = (void*)b; 1699b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1700b5df2d14SHong Zhang 1701b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1702b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1703b5df2d14SHong Zhang B->mapping = 0; 1704b5df2d14SHong Zhang B->factor = 0; 1705b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1706b5df2d14SHong Zhang 1707b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1708b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1709b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1710b5df2d14SHong Zhang 1711b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1712899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1713b5df2d14SHong Zhang 1714b5df2d14SHong Zhang /* build cache for off array entries formed */ 1715b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1716b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1717b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1718b5df2d14SHong Zhang b->garray = PETSC_NULL; 1719b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1720b5df2d14SHong Zhang 1721f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1722b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 172364a35ccbSBarry Smith b->setvalueslen = 0; 1724b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1725b5df2d14SHong Zhang #endif 1726b5df2d14SHong Zhang 1727b5df2d14SHong Zhang /* stuff used in block assembly */ 1728b5df2d14SHong Zhang b->barray = 0; 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1731b5df2d14SHong Zhang b->lvec = 0; 1732b5df2d14SHong Zhang b->Mvctx = 0; 173340781036SHong Zhang b->slvec0 = 0; 173440781036SHong Zhang b->slvec0b = 0; 173540781036SHong Zhang b->slvec1 = 0; 173640781036SHong Zhang b->slvec1a = 0; 173740781036SHong Zhang b->slvec1b = 0; 173840781036SHong Zhang b->sMvctx = 0; 1739b5df2d14SHong Zhang 1740b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1741b5df2d14SHong Zhang b->rowindices = 0; 1742b5df2d14SHong Zhang b->rowvalues = 0; 1743b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1744b5df2d14SHong Zhang 1745b5df2d14SHong Zhang /* hash table stuff */ 1746b5df2d14SHong Zhang b->ht = 0; 1747b5df2d14SHong Zhang b->hd = 0; 1748b5df2d14SHong Zhang b->ht_size = 0; 1749b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1750b5df2d14SHong Zhang b->ht_fact = 0; 1751b5df2d14SHong Zhang b->ht_total_ct = 0; 1752b5df2d14SHong Zhang b->ht_insert_ct = 0; 1753b5df2d14SHong Zhang 175459ffdab8SBarry Smith b->in_loc = 0; 175559ffdab8SBarry Smith b->v_loc = 0; 175659ffdab8SBarry Smith b->n_loc = 0; 175777925062SSatish Balay ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17588c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1759b5df2d14SHong Zhang if (flg) { 1760f6275e2eSBarry Smith PetscReal fact = 1.39; 1761b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 17628c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1763b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1764b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1765ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1766b5df2d14SHong Zhang } 17678c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17688c07d4e3SBarry Smith 1769b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1770b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1771b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1772b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1773b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1774b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1775b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1776b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1777b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1778a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1779a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1780a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 178223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 178517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1786b5df2d14SHong Zhang PetscFunctionReturn(0); 1787b5df2d14SHong Zhang } 1788273d9f13SBarry Smith EXTERN_C_END 1789b5df2d14SHong Zhang 1790209238afSKris Buschelman /*MC 1791002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1792209238afSKris Buschelman 1793209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1794209238afSKris Buschelman and MATMPISBAIJ otherwise. 1795209238afSKris Buschelman 1796209238afSKris Buschelman Options Database Keys: 1797209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1798209238afSKris Buschelman 1799209238afSKris Buschelman Level: beginner 1800209238afSKris Buschelman 1801209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1802209238afSKris Buschelman M*/ 1803209238afSKris Buschelman 1804209238afSKris Buschelman EXTERN_C_BEGIN 1805209238afSKris Buschelman #undef __FUNCT__ 1806209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1807be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1808dfbe8321SBarry Smith { 18096849ba73SBarry Smith PetscErrorCode ierr; 18101302d50aSBarry Smith PetscMPIInt size; 1811209238afSKris Buschelman 1812209238afSKris Buschelman PetscFunctionBegin; 1813209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1814209238afSKris Buschelman if (size == 1) { 1815209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1816209238afSKris Buschelman } else { 1817209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1818209238afSKris Buschelman } 1819209238afSKris Buschelman PetscFunctionReturn(0); 1820209238afSKris Buschelman } 1821209238afSKris Buschelman EXTERN_C_END 1822209238afSKris Buschelman 18234a2ae208SSatish Balay #undef __FUNCT__ 18244a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1825b5df2d14SHong Zhang /*@C 1826b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1827b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1828b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1829b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1830b5df2d14SHong Zhang 1831b5df2d14SHong Zhang Collective on Mat 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang Input Parameters: 1834b5df2d14SHong Zhang + A - the matrix 1835b5df2d14SHong Zhang . bs - size of blockk 1836b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1837b5df2d14SHong Zhang submatrix (same for all local rows) 1838b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18396d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18406d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18416d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1842b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1843b5df2d14SHong Zhang submatrix (same for all local rows). 1844b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1845b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1846b5df2d14SHong Zhang each block row) or PETSC_NULL. 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang Options Database Keys: 1850b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1851b5df2d14SHong Zhang block calculations (much slower) 1852b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1853b5df2d14SHong Zhang 1854b5df2d14SHong Zhang Notes: 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1857b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1858b5df2d14SHong Zhang 185949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 186049a6f317SBarry Smith 1861b5df2d14SHong Zhang Storage Information: 1862b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1863b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1864b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1865b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1868b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1869b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1870b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1871b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1872b5df2d14SHong Zhang 1873b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1874b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1875b5df2d14SHong Zhang 1876b5df2d14SHong Zhang .vb 1877b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1878b5df2d14SHong Zhang ------------------- 1879b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1880b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1881b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1882b5df2d14SHong Zhang ------------------- 1883b5df2d14SHong Zhang .ve 1884b5df2d14SHong Zhang 1885b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1886b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18876d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18886d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1889b5df2d14SHong Zhang 18906d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18916d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1892b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1893b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1894b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1895b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1896b5df2d14SHong Zhang matrices. 1897b5df2d14SHong Zhang 1898b5df2d14SHong Zhang Level: intermediate 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1903b5df2d14SHong Zhang @*/ 1904be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1905b5df2d14SHong Zhang { 19061302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1907b5df2d14SHong Zhang 1908b5df2d14SHong Zhang PetscFunctionBegin; 1909a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1910a23d5eceSKris Buschelman if (f) { 1911a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1912b5df2d14SHong Zhang } 1913b5df2d14SHong Zhang PetscFunctionReturn(0); 1914b5df2d14SHong Zhang } 1915b5df2d14SHong Zhang 19164a2ae208SSatish Balay #undef __FUNCT__ 19174a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1918a30f8f8cSSatish Balay /*@C 1919a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1920a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1921a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1922a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1923a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1924a30f8f8cSSatish Balay 1925a30f8f8cSSatish Balay Collective on MPI_Comm 1926a30f8f8cSSatish Balay 1927a30f8f8cSSatish Balay Input Parameters: 1928a30f8f8cSSatish Balay + comm - MPI communicator 1929a30f8f8cSSatish Balay . bs - size of blockk 1930a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1931a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1932a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1933a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1934a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1935a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1936a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1937a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1938a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1939a30f8f8cSSatish Balay submatrix (same for all local rows) 1940a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19416d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19426d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19436d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1944a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1945a30f8f8cSSatish Balay submatrix (same for all local rows). 1946a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1947a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1948a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1949a30f8f8cSSatish Balay 1950a30f8f8cSSatish Balay Output Parameter: 1951a30f8f8cSSatish Balay . A - the matrix 1952a30f8f8cSSatish Balay 1953a30f8f8cSSatish Balay Options Database Keys: 1954a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1955a30f8f8cSSatish Balay block calculations (much slower) 1956a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1957a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1958a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay Notes: 1961d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1962d1be2dadSMatthew Knepley 1963a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1964a30f8f8cSSatish Balay (possibly both). 1965a30f8f8cSSatish Balay 1966a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1967a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1968a30f8f8cSSatish Balay 196949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 197049a6f317SBarry Smith 1971a30f8f8cSSatish Balay Storage Information: 1972a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1973a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1974a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1975a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1978a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1979a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1980a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1981a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1982a30f8f8cSSatish Balay 1983a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1984a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay .vb 1987a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1988a30f8f8cSSatish Balay ------------------- 1989a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1990a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1991a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1992a30f8f8cSSatish Balay ------------------- 1993a30f8f8cSSatish Balay .ve 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1996a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19976d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19986d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1999a30f8f8cSSatish Balay 20006d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20016d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2002a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2003a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2004a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2005a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2006a30f8f8cSSatish Balay matrices. 2007a30f8f8cSSatish Balay 2008a30f8f8cSSatish Balay Level: intermediate 2009a30f8f8cSSatish Balay 2010a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2011a30f8f8cSSatish Balay 2012a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2013a30f8f8cSSatish Balay @*/ 2014a30f8f8cSSatish Balay 2015be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2016a30f8f8cSSatish Balay { 20176849ba73SBarry Smith PetscErrorCode ierr; 20181302d50aSBarry Smith PetscMPIInt size; 2019a30f8f8cSSatish Balay 2020a30f8f8cSSatish Balay PetscFunctionBegin; 2021f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2022f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2023273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2024273d9f13SBarry Smith if (size > 1) { 2025b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2026b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2027273d9f13SBarry Smith } else { 2028273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2029273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2030273d9f13SBarry Smith } 2031a30f8f8cSSatish Balay PetscFunctionReturn(0); 2032a30f8f8cSSatish Balay } 2033a30f8f8cSSatish Balay 2034a30f8f8cSSatish Balay 20354a2ae208SSatish Balay #undef __FUNCT__ 20364a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20376849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2038a30f8f8cSSatish Balay { 2039a30f8f8cSSatish Balay Mat mat; 2040a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2041dfbe8321SBarry Smith PetscErrorCode ierr; 2042899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2043387bc808SHong Zhang PetscScalar *array; 2044a30f8f8cSSatish Balay 2045a30f8f8cSSatish Balay PetscFunctionBegin; 2046a30f8f8cSSatish Balay *newmat = 0; 2047f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2048899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2049be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20501d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2051899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2052899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2053e1b6402fSHong Zhang 205482327fa8SHong Zhang mat->factor = matin->factor; 2055273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 205682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20577fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20587fff6886SHong Zhang 2059b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2060a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2061a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2062a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2063a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2064a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2065a30f8f8cSSatish Balay 2066899cda47SBarry Smith 2067a30f8f8cSSatish Balay a->size = oldmat->size; 2068a30f8f8cSSatish Balay a->rank = oldmat->rank; 2069a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2070a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2071a30f8f8cSSatish Balay a->rowindices = 0; 2072a30f8f8cSSatish Balay a->rowvalues = 0; 2073a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2074a30f8f8cSSatish Balay a->barray = 0; 2075899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2076899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2077899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2078899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2079a30f8f8cSSatish Balay 2080a30f8f8cSSatish Balay /* hash table stuff */ 2081a30f8f8cSSatish Balay a->ht = 0; 2082a30f8f8cSSatish Balay a->hd = 0; 2083a30f8f8cSSatish Balay a->ht_size = 0; 2084a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2085a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2086a30f8f8cSSatish Balay a->ht_total_ct = 0; 2087a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2088a30f8f8cSSatish Balay 2089899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2090a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2091899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2092a30f8f8cSSatish Balay if (oldmat->colmap) { 2093a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2094a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2095a30f8f8cSSatish Balay #else 20961302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 209752e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20981302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2099a30f8f8cSSatish Balay #endif 2100a30f8f8cSSatish Balay } else a->colmap = 0; 2101387bc808SHong Zhang 2102a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21031302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 210452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21051302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2106a30f8f8cSSatish Balay } else a->garray = 0; 2107a30f8f8cSSatish Balay 2108a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 210952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2110a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 211152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 211282327fa8SHong Zhang 211382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 211452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 211582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 211652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2117387bc808SHong Zhang 2118387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21191ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2120387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2121387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21221ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21231ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2124387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21251ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 212652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 212852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 212952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 213052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2131387bc808SHong Zhang 2132387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2133387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2134387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 213552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 213682327fa8SHong Zhang 2137a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 213852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 214052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2141b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2142a30f8f8cSSatish Balay *newmat = mat; 2143a30f8f8cSSatish Balay PetscFunctionReturn(0); 2144a30f8f8cSSatish Balay } 2145a30f8f8cSSatish Balay 2146a30f8f8cSSatish Balay #include "petscsys.h" 2147a30f8f8cSSatish Balay 21484a2ae208SSatish Balay #undef __FUNCT__ 21494a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2150f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2151a30f8f8cSSatish Balay { 2152a30f8f8cSSatish Balay Mat A; 21536849ba73SBarry Smith PetscErrorCode ierr; 215413f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 215587828ca2SBarry Smith PetscScalar *vals,*buf; 2156a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2157a30f8f8cSSatish Balay MPI_Status status; 21582fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 215913f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21602fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21611302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21621302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21631302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 216413f74950SBarry Smith int fd; 2165a30f8f8cSSatish Balay 2166a30f8f8cSSatish Balay PetscFunctionBegin; 216777925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21688c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21698c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2170a30f8f8cSSatish Balay 2171a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay if (!rank) { 2174b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2175a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2176552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2177a30f8f8cSSatish Balay if (header[3] < 0) { 217829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2179a30f8f8cSSatish Balay } 2180a30f8f8cSSatish Balay } 2181a30f8f8cSSatish Balay 2182a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2183a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2184a30f8f8cSSatish Balay 218529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2186a30f8f8cSSatish Balay 2187a30f8f8cSSatish Balay /* 2188a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2189a30f8f8cSSatish Balay divisible by the blocksize 2190a30f8f8cSSatish Balay */ 2191a30f8f8cSSatish Balay Mbs = M/bs; 2192a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2193a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2194a30f8f8cSSatish Balay else Mbs++; 2195a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2196ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2197a30f8f8cSSatish Balay } 2198a30f8f8cSSatish Balay 2199a30f8f8cSSatish Balay /* determine ownership of all rows */ 2200a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2201a30f8f8cSSatish Balay m = mbs*bs; 2202a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2203a30f8f8cSSatish Balay browners = rowners + size + 1; 2204a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay rowners[0] = 0; 2206a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2207a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2208a30f8f8cSSatish Balay rstart = rowners[rank]; 2209a30f8f8cSSatish Balay rend = rowners[rank+1]; 2210a30f8f8cSSatish Balay 2211a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22122fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay if (!rank) { 22141302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2216a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2217a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2218a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2219a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay } else { 2222a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay } 2224a30f8f8cSSatish Balay 22250222edb1SHong Zhang if (!rank) { /* procs[0] */ 2226a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22271302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22281302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2229a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2230a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2231a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2232a30f8f8cSSatish Balay } 2233a30f8f8cSSatish Balay } 2234a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2235a30f8f8cSSatish Balay 2236a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2237a30f8f8cSSatish Balay maxnz = 0; 2238a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2239a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2240a30f8f8cSSatish Balay } 22411302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2242a30f8f8cSSatish Balay 2243a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2244a30f8f8cSSatish Balay nz = procsnz[0]; 22451302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2246a30f8f8cSSatish Balay mycols = ibuf; 2247a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2248a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2250a30f8f8cSSatish Balay 2251a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2252a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2253a30f8f8cSSatish Balay nz = procsnz[i]; 2254a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2255a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay } 2257a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2258a30f8f8cSSatish Balay if (size != 1) { 2259a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2260a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2261a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2262a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay } 2264a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22650222edb1SHong Zhang } else { /* procs[i], i>0 */ 2266a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2267a30f8f8cSSatish Balay nz = 0; 2268a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2269a30f8f8cSSatish Balay nz += locrowlens[i]; 2270a30f8f8cSSatish Balay } 22711302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay mycols = ibuf; 2273a30f8f8cSSatish Balay /* receive message of column indices*/ 2274a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2275a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 227629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2277a30f8f8cSSatish Balay } 2278a30f8f8cSSatish Balay 2279a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22801302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2281a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22821302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22831302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2284a30f8f8cSSatish Balay masked1 = mask + Mbs; 2285a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2286a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2287a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2288a30f8f8cSSatish Balay dcount = 0; 2289a30f8f8cSSatish Balay odcount = 0; 2290a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2291a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2292a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22930222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2294a30f8f8cSSatish Balay if (!mask[tmp]) { 2295a30f8f8cSSatish Balay mask[tmp] = 1; 22960222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22970222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2298a30f8f8cSSatish Balay } 2299a30f8f8cSSatish Balay } 2300a30f8f8cSSatish Balay rowcount++; 2301a30f8f8cSSatish Balay } 2302a30f8f8cSSatish Balay 23030222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23040222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2305a30f8f8cSSatish Balay 2306a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2307a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2308a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2309a30f8f8cSSatish Balay } 2310a30f8f8cSSatish Balay 2311a30f8f8cSSatish Balay /* create our matrix */ 2312f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2313f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 231422191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 231522191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2316273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2317a30f8f8cSSatish Balay 2318a30f8f8cSSatish Balay if (!rank) { 231987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2320a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2321a30f8f8cSSatish Balay nz = procsnz[0]; 2322a30f8f8cSSatish Balay vals = buf; 2323a30f8f8cSSatish Balay mycols = ibuf; 2324a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2325a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2326a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2327a30f8f8cSSatish Balay 2328a30f8f8cSSatish Balay /* insert into matrix */ 2329a30f8f8cSSatish Balay jj = rstart*bs; 2330a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23317e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2332a30f8f8cSSatish Balay mycols += locrowlens[i]; 2333a30f8f8cSSatish Balay vals += locrowlens[i]; 2334a30f8f8cSSatish Balay jj++; 2335a30f8f8cSSatish Balay } 23367e06b45fSHong Zhang 2337a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2338a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2339a30f8f8cSSatish Balay nz = procsnz[i]; 2340a30f8f8cSSatish Balay vals = buf; 2341a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2342a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2343a30f8f8cSSatish Balay } 2344a30f8f8cSSatish Balay /* the last proc */ 2345a30f8f8cSSatish Balay if (size != 1){ 2346a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2347a30f8f8cSSatish Balay vals = buf; 2348a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2349a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2350a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2351a30f8f8cSSatish Balay } 2352a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23537e06b45fSHong Zhang 2354a30f8f8cSSatish Balay } else { 2355a30f8f8cSSatish Balay /* receive numeric values */ 235687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2357a30f8f8cSSatish Balay 2358a30f8f8cSSatish Balay /* receive message of values*/ 2359a30f8f8cSSatish Balay vals = buf; 2360a30f8f8cSSatish Balay mycols = ibuf; 2361a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2362a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 236329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2364a30f8f8cSSatish Balay 2365a30f8f8cSSatish Balay /* insert into matrix */ 2366a30f8f8cSSatish Balay jj = rstart*bs; 2367a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2368a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2369a30f8f8cSSatish Balay mycols += locrowlens[i]; 2370a30f8f8cSSatish Balay vals += locrowlens[i]; 2371a30f8f8cSSatish Balay jj++; 2372a30f8f8cSSatish Balay } 2373a30f8f8cSSatish Balay } 23747e06b45fSHong Zhang 2375a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2376a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2377a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2379a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2380a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2381a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2382a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238322191285SKris Buschelman *newmat = A; 2384a30f8f8cSSatish Balay PetscFunctionReturn(0); 2385a30f8f8cSSatish Balay } 2386a30f8f8cSSatish Balay 23874a2ae208SSatish Balay #undef __FUNCT__ 23884a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2389dcf5cc72SBarry Smith /*XXXXX@ 2390a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2391a30f8f8cSSatish Balay 2392a30f8f8cSSatish Balay Input Parameters: 2393a30f8f8cSSatish Balay . mat - the matrix 2394a30f8f8cSSatish Balay . fact - factor 2395a30f8f8cSSatish Balay 2396a30f8f8cSSatish Balay Collective on Mat 2397a30f8f8cSSatish Balay 2398a30f8f8cSSatish Balay Level: advanced 2399a30f8f8cSSatish Balay 2400a30f8f8cSSatish Balay Notes: 2401a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2402a30f8f8cSSatish Balay 2403a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay .seealso: MatSetOption() 2406dcf5cc72SBarry Smith @XXXXX*/ 2407dcf5cc72SBarry Smith 240824d5174aSHong Zhang 24094a2ae208SSatish Balay #undef __FUNCT__ 24104a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2411dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 241224d5174aSHong Zhang { 241324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2414f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2415ca54ac64SHong Zhang PetscReal atmp; 241687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2417dfbe8321SBarry Smith PetscErrorCode ierr; 24181302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24191302d50aSBarry Smith PetscMPIInt rank,size; 24201302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 242187828ca2SBarry Smith PetscScalar *va; 24228a1c53f2SBarry Smith MatScalar *ba; 2423f4c0e9e4SHong Zhang MPI_Status stat; 242424d5174aSHong Zhang 242524d5174aSHong Zhang PetscFunctionBegin; 2426d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24271ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2428f4c0e9e4SHong Zhang 242956faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 243056faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2431f4c0e9e4SHong Zhang 2432899cda47SBarry Smith bs = A->rmap.bs; 2433f4c0e9e4SHong Zhang mbs = a->mbs; 2434f4c0e9e4SHong Zhang Mbs = a->Mbs; 2435f4c0e9e4SHong Zhang ba = b->a; 2436f4c0e9e4SHong Zhang bi = b->i; 2437f4c0e9e4SHong Zhang bj = b->j; 2438f4c0e9e4SHong Zhang 2439f4c0e9e4SHong Zhang /* find ownerships */ 2440899cda47SBarry Smith rowners_bs = A->rmap.range; 2441f4c0e9e4SHong Zhang 2442f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 244382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2444ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2445f4c0e9e4SHong Zhang 2446f4c0e9e4SHong Zhang /* row_max for B */ 2447b8475685SHong Zhang if (rank != size-1){ 2448f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2449f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2450f4c0e9e4SHong Zhang brow = bs*i; 2451f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2452f4c0e9e4SHong Zhang bcol = bs*(*bj); 2453f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2454ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 245504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2456f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2457f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2458ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2459ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2460f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2461f4c0e9e4SHong Zhang } 2462f4c0e9e4SHong Zhang } 2463f4c0e9e4SHong Zhang bj++; 2464f4c0e9e4SHong Zhang } 2465f4c0e9e4SHong Zhang } 2466f4c0e9e4SHong Zhang 2467f4c0e9e4SHong Zhang /* send values to its owners */ 2468f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2469f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2470ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 247156faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2472ca54ac64SHong Zhang } 2473f4c0e9e4SHong Zhang } 2474f4c0e9e4SHong Zhang 2475f4c0e9e4SHong Zhang /* receive values */ 2476ca54ac64SHong Zhang if (rank){ 2477f4c0e9e4SHong Zhang rvalues = work; 2478ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2479f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 248056faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2481f4c0e9e4SHong Zhang /* process values */ 2482f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2483ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2484f4c0e9e4SHong Zhang } 2485f4c0e9e4SHong Zhang } 2486ca54ac64SHong Zhang } 2487f4c0e9e4SHong Zhang 24881ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2489ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249024d5174aSHong Zhang PetscFunctionReturn(0); 249124d5174aSHong Zhang } 24922798e883SHong Zhang 24932798e883SHong Zhang #undef __FUNCT__ 24942798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24951302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24962798e883SHong Zhang { 24972798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2498dfbe8321SBarry Smith PetscErrorCode ierr; 2499899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2500efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2501ffe4fb16SHong Zhang Vec bb1; 2502ffe4fb16SHong Zhang 2503ffe4fb16SHong Zhang PetscFunctionBegin; 250477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2505ffe4fb16SHong Zhang if (bs > 1) 2506ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2507ffe4fb16SHong Zhang 2508ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2509ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2510ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2511ffe4fb16SHong Zhang its--; 2512ffe4fb16SHong Zhang } 2513ffe4fb16SHong Zhang 2514ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2515ffe4fb16SHong Zhang while (its--){ 2516ffe4fb16SHong Zhang 2517ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2518ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2519ffe4fb16SHong Zhang 2520ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25211ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25221ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2523ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25241ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2525ffe4fb16SHong Zhang 2526efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2527ffe4fb16SHong Zhang 2528ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25291ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25301ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2531ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25321ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2533ffe4fb16SHong Zhang 2534ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25352dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2536ffe4fb16SHong Zhang 2537ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25381ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25391ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2540ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2541ffe4fb16SHong Zhang 2542ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2543ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2544ffe4fb16SHong Zhang 2545ffe4fb16SHong Zhang /* local diagonal sweep */ 2546ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2547ffe4fb16SHong Zhang } 2548ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2549ffe4fb16SHong Zhang } else { 2550ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2551ffe4fb16SHong Zhang } 2552ffe4fb16SHong Zhang PetscFunctionReturn(0); 2553ffe4fb16SHong Zhang } 2554ffe4fb16SHong Zhang 2555ffe4fb16SHong Zhang #undef __FUNCT__ 2556ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25571302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2558ffe4fb16SHong Zhang { 2559ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2560dfbe8321SBarry Smith PetscErrorCode ierr; 25612798e883SHong Zhang Vec lvec1,bb1; 25622798e883SHong Zhang 25632798e883SHong Zhang PetscFunctionBegin; 256477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2565899cda47SBarry Smith if (matin->rmap.bs > 1) 25662798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25672798e883SHong Zhang 2568c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25692798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2570bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25712798e883SHong Zhang its--; 25722798e883SHong Zhang } 25732798e883SHong Zhang 25742798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25752798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25762798e883SHong Zhang while (its--){ 25772798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25782798e883SHong Zhang 25792798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25802798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2581efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25822798e883SHong Zhang 25832798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25842798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25852798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25862798e883SHong Zhang 25872798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2588efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25892798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25902798e883SHong Zhang 25912798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25922798e883SHong Zhang 2593c14dc6b6SHong Zhang /* diagonal sweep */ 2594bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25952798e883SHong Zhang } 25962798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25972798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2598c14dc6b6SHong Zhang } else { 2599c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2600c14dc6b6SHong Zhang } 26012798e883SHong Zhang PetscFunctionReturn(0); 26022798e883SHong Zhang } 26032798e883SHong Zhang 2604