xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision dbd8c25a42db0f3ce9ca430926dd9cd3605bf938)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
101085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
103a30f8f8cSSatish Balay       N = nrow++ - 1;  \
104a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
105a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
106a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
107a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
110a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
111a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
112a30f8f8cSSatish Balay       a_noinsert:; \
113a30f8f8cSSatish Balay     ailen[brow] = nrow; \
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
116a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
117a30f8f8cSSatish Balay { \
118a30f8f8cSSatish Balay     brow = row/bs;  \
119a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
120a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
121a30f8f8cSSatish Balay       bcol = col/bs; \
122a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
123a30f8f8cSSatish Balay       low = 0; high = nrow; \
124a30f8f8cSSatish Balay       while (high-low > 3) { \
125a30f8f8cSSatish Balay         t = (low+high)/2; \
126a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
127a30f8f8cSSatish Balay         else              low  = t; \
128a30f8f8cSSatish Balay       } \
129a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
130a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
131a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
132a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
133a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
134a30f8f8cSSatish Balay           else                    *bap  = value;  \
135a30f8f8cSSatish Balay           goto b_noinsert; \
136a30f8f8cSSatish Balay         } \
137a30f8f8cSSatish Balay       } \
138a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
139085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
140421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       b_noinsert:; \
151a30f8f8cSSatish Balay     bilen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #endif
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1564a2ae208SSatish Balay #undef __FUNCT__
1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
159a30f8f8cSSatish Balay {
160a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
161dfbe8321SBarry Smith   PetscErrorCode ierr;
1621302d50aSBarry Smith   PetscInt       i,N = m*n;
163a30f8f8cSSatish Balay   MatScalar      *vsingle;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   PetscFunctionBegin;
166a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
16705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
16882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
169a30f8f8cSSatish Balay     b->setvalueslen  = N;
170a30f8f8cSSatish Balay   }
171a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
172a30f8f8cSSatish Balay 
173a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
174a30f8f8cSSatish Balay     vsingle[i] = v[i];
175a30f8f8cSSatish Balay   }
176a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
177a30f8f8cSSatish Balay   PetscFunctionReturn(0);
178a30f8f8cSSatish Balay }
179a30f8f8cSSatish Balay 
1804a2ae208SSatish Balay #undef __FUNCT__
1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
183a30f8f8cSSatish Balay {
184a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
185dfbe8321SBarry Smith   PetscErrorCode ierr;
1861302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
187a30f8f8cSSatish Balay   MatScalar      *vsingle;
188a30f8f8cSSatish Balay 
189a30f8f8cSSatish Balay   PetscFunctionBegin;
190a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
19105b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
19282502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
193a30f8f8cSSatish Balay     b->setvalueslen  = N;
194a30f8f8cSSatish Balay   }
195a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
196a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
197a30f8f8cSSatish Balay     vsingle[i] = v[i];
198a30f8f8cSSatish Balay   }
199a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
201a30f8f8cSSatish Balay }
202a30f8f8cSSatish Balay #endif
203a30f8f8cSSatish Balay 
204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
205a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
206a30f8f8cSSatish Balay */
2074a2ae208SSatish Balay #undef __FUNCT__
208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar"
2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
210a30f8f8cSSatish Balay {
211a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
212a30f8f8cSSatish Balay   MatScalar      value;
213b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
214dfbe8321SBarry Smith   PetscErrorCode ierr;
2151302d50aSBarry Smith   PetscInt       i,j,row,col;
216899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
217899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
218899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
219a30f8f8cSSatish Balay 
220a30f8f8cSSatish Balay   /* Some Variables required in the macro */
221a30f8f8cSSatish Balay   Mat            A = baij->A;
222a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2231302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
224a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
225a30f8f8cSSatish Balay 
226a30f8f8cSSatish Balay   Mat            B = baij->B;
227a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2281302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
229a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
230a30f8f8cSSatish Balay 
2311302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2321302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
233a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
234a30f8f8cSSatish Balay 
235a30f8f8cSSatish Balay   /* for stash */
236910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
237910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
238a30f8f8cSSatish Balay 
239a30f8f8cSSatish Balay   PetscFunctionBegin;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   if (!baij->donotstash){
24259ffdab8SBarry Smith     if (n > baij->n_loc) {
24359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
24559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
24659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
24759ffdab8SBarry Smith       baij->n_loc = n;
24859ffdab8SBarry Smith     }
24959ffdab8SBarry Smith     in_loc = baij->in_loc;
25059ffdab8SBarry Smith     v_loc  = baij->v_loc;
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
254a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
256899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
257a30f8f8cSSatish Balay #endif
258a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
259a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
260a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
26201b2bd88SHong Zhang           if (a->ignore_ltriangular){
26301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26401b2bd88SHong Zhang           } else {
26501b2bd88SHong Zhang             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)");
26601b2bd88SHong Zhang           }
26701b2bd88SHong Zhang         }
268a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
269a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
270a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
271a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
272a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
273a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
274a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
275a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
277899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
278a30f8f8cSSatish Balay #endif
279a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
280a30f8f8cSSatish Balay           if (mat->was_assembled) {
281a30f8f8cSSatish Balay             if (!baij->colmap) {
282653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
283a30f8f8cSSatish Balay             }
284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
285a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28671730473SSatish Balay             col  = col - 1;
287a30f8f8cSSatish Balay #else
28871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
289a30f8f8cSSatish Balay #endif
290a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
291a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
292a30f8f8cSSatish Balay               col =  in[j];
293a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
294a30f8f8cSSatish Balay               B = baij->B;
295a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
296a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
297a30f8f8cSSatish Balay               ba=b->a;
29871730473SSatish Balay             } else col += in[j]%bs;
299a30f8f8cSSatish Balay           } else col = in[j];
300a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
301a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
302a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
303a30f8f8cSSatish Balay         }
304a30f8f8cSSatish Balay       }
305a30f8f8cSSatish Balay     } else {  /* off processor entry */
306a30f8f8cSSatish Balay       if (!baij->donotstash) {
307a30f8f8cSSatish Balay         n_loc = 0;
308a30f8f8cSSatish Balay         for (j=0; j<n; j++){
309f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
310a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
311a30f8f8cSSatish Balay           if (roworiented) {
312a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
313a30f8f8cSSatish Balay           } else {
314a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
315a30f8f8cSSatish Balay           }
316a30f8f8cSSatish Balay           n_loc++;
317a30f8f8cSSatish Balay         }
318a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
319a30f8f8cSSatish Balay       }
320a30f8f8cSSatish Balay     }
321a30f8f8cSSatish Balay   }
322a30f8f8cSSatish Balay   PetscFunctionReturn(0);
323a30f8f8cSSatish Balay }
324a30f8f8cSSatish Balay 
3254a2ae208SSatish Balay #undef __FUNCT__
326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
328a30f8f8cSSatish Balay {
3290880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
330f15d580aSBarry Smith   const MatScalar *value;
331f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3320880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
333dfbe8321SBarry Smith   PetscErrorCode  ierr;
334899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
335899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
336899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
3370880e062SHong Zhang 
338a30f8f8cSSatish Balay   PetscFunctionBegin;
3390880e062SHong Zhang   if(!barray) {
3400880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3410880e062SHong Zhang     baij->barray = barray;
3420880e062SHong Zhang   }
3430880e062SHong Zhang 
3440880e062SHong Zhang   if (roworiented) {
3450880e062SHong Zhang     stepval = (n-1)*bs;
3460880e062SHong Zhang   } else {
3470880e062SHong Zhang     stepval = (m-1)*bs;
3480880e062SHong Zhang   }
3490880e062SHong Zhang   for (i=0; i<m; i++) {
3500880e062SHong Zhang     if (im[i] < 0) continue;
3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
35277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3530880e062SHong Zhang #endif
3540880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3550880e062SHong Zhang       row = im[i] - rstart;
3560880e062SHong Zhang       for (j=0; j<n; j++) {
3570880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3580880e062SHong Zhang         if ((roworiented) && (n == 1)) {
359f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3600880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
361f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3620880e062SHong Zhang         } else { /* Here a copy is required */
3630880e062SHong Zhang           if (roworiented) {
3640880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3650880e062SHong Zhang           } else {
3660880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3670880e062SHong Zhang           }
3680880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3690880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3700880e062SHong Zhang               *barray++  = *value++;
3710880e062SHong Zhang             }
3720880e062SHong Zhang           }
3730880e062SHong Zhang           barray -=bs2;
3740880e062SHong Zhang         }
3750880e062SHong Zhang 
3760880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3770880e062SHong Zhang           col  = in[j] - cstart;
3780880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3790880e062SHong Zhang         }
3800880e062SHong Zhang         else if (in[j] < 0) continue;
3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
38277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3830880e062SHong Zhang #endif
3840880e062SHong Zhang         else {
3850880e062SHong Zhang           if (mat->was_assembled) {
3860880e062SHong Zhang             if (!baij->colmap) {
387653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3880880e062SHong Zhang             }
3890880e062SHong Zhang 
3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3921302d50aSBarry Smith             { PetscInt data;
3930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3940880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3950880e062SHong Zhang             }
3960880e062SHong Zhang #else
3970880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3980880e062SHong Zhang #endif
3990880e062SHong Zhang #endif
4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4010880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4020880e062SHong Zhang             col  = (col - 1)/bs;
4030880e062SHong Zhang #else
4040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4050880e062SHong Zhang #endif
4060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4070880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4080880e062SHong Zhang               col =  in[j];
4090880e062SHong Zhang             }
4100880e062SHong Zhang           }
4110880e062SHong Zhang           else col = in[j];
412e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4130880e062SHong Zhang         }
4140880e062SHong Zhang       }
4150880e062SHong Zhang     } else {
4160880e062SHong Zhang       if (!baij->donotstash) {
4170880e062SHong Zhang         if (roworiented) {
4180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4190880e062SHong Zhang         } else {
4200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4210880e062SHong Zhang         }
4220880e062SHong Zhang       }
4230880e062SHong Zhang     }
4240880e062SHong Zhang   }
4250880e062SHong Zhang   PetscFunctionReturn(0);
426a30f8f8cSSatish Balay }
427a30f8f8cSSatish Balay 
4284a2ae208SSatish Balay #undef __FUNCT__
4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
431a30f8f8cSSatish Balay {
432f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4336849ba73SBarry Smith   PetscErrorCode ierr;
434899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
435899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
436a30f8f8cSSatish Balay 
437a30f8f8cSSatish Balay   PetscFunctionBegin;
438a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43977431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
440899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
441a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
442a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
443a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
44477431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
445899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
446a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
447a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
448c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
449a30f8f8cSSatish Balay         } else {
450a30f8f8cSSatish Balay           if (!baij->colmap) {
451653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
452a30f8f8cSSatish Balay           }
453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
454a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
455a30f8f8cSSatish Balay           data --;
456a30f8f8cSSatish Balay #else
457a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
458a30f8f8cSSatish Balay #endif
459a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
460a30f8f8cSSatish Balay           else {
461a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
462e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
463a30f8f8cSSatish Balay           }
464a30f8f8cSSatish Balay         }
465a30f8f8cSSatish Balay       }
466a30f8f8cSSatish Balay     } else {
46729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
468a30f8f8cSSatish Balay     }
469a30f8f8cSSatish Balay   }
470a30f8f8cSSatish Balay  PetscFunctionReturn(0);
471a30f8f8cSSatish Balay }
472a30f8f8cSSatish Balay 
4734a2ae208SSatish Balay #undef __FUNCT__
4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
476a30f8f8cSSatish Balay {
477a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
478dfbe8321SBarry Smith   PetscErrorCode ierr;
479a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
480a30f8f8cSSatish Balay 
481a30f8f8cSSatish Balay   PetscFunctionBegin;
482a30f8f8cSSatish Balay   if (baij->size == 1) {
483a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
484a30f8f8cSSatish Balay   } else {
485a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
486f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
487a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
488a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
489a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
490a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
491d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
492a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
493a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4940b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4950b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4960b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4970b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
498899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
499899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
5000b8dc8d2SHong Zhang       MatScalar    *v;
5010b8dc8d2SHong Zhang 
502899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
503899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
504899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
5050b8dc8d2SHong Zhang       /* Amat */
5060b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5070b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5080b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5090b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5100b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5110b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5120b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5130b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5140b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5150b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5160b8dc8d2SHong Zhang               /* non-diagonal block */
5170b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5180b8dc8d2SHong Zhang             }
5190b8dc8d2SHong Zhang           }
5200b8dc8d2SHong Zhang         }
5210b8dc8d2SHong Zhang       }
5220b8dc8d2SHong Zhang       /* Bmat */
5230b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5240b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5250b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5260b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5270b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5280b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5290b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5300b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5310b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5320b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5330b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5340b8dc8d2SHong Zhang             }
5350b8dc8d2SHong Zhang           }
5360b8dc8d2SHong Zhang         }
5370b8dc8d2SHong Zhang       }
538899cda47SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5390b8dc8d2SHong Zhang       *norm = 0.0;
540899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
5410b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5420b8dc8d2SHong Zhang       }
5430b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     } else {
54529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay   }
548a30f8f8cSSatish Balay   PetscFunctionReturn(0);
549a30f8f8cSSatish Balay }
550a30f8f8cSSatish Balay 
5514a2ae208SSatish Balay #undef __FUNCT__
5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
554a30f8f8cSSatish Balay {
555a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
556dfbe8321SBarry Smith   PetscErrorCode ierr;
5571302d50aSBarry Smith   PetscInt       nstash,reallocs;
558a30f8f8cSSatish Balay   InsertMode     addv;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   PetscFunctionBegin;
561a30f8f8cSSatish Balay   if (baij->donotstash) {
562a30f8f8cSSatish Balay     PetscFunctionReturn(0);
563a30f8f8cSSatish Balay   }
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
566a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
569a30f8f8cSSatish Balay   }
570a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
571a30f8f8cSSatish Balay 
572899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
573899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
575ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
576a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
577ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
578a30f8f8cSSatish Balay   PetscFunctionReturn(0);
579a30f8f8cSSatish Balay }
580a30f8f8cSSatish Balay 
5814a2ae208SSatish Balay #undef __FUNCT__
5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
584a30f8f8cSSatish Balay {
585a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
586a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5876849ba73SBarry Smith   PetscErrorCode ierr;
58813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5891302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
59013f74950SBarry Smith   PetscMPIInt    n;
591a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
592a30f8f8cSSatish Balay   MatScalar      *val;
593a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
594a30f8f8cSSatish Balay 
59591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
596a30f8f8cSSatish Balay   PetscFunctionBegin;
597a30f8f8cSSatish Balay 
598a30f8f8cSSatish Balay   if (!baij->donotstash) {
599a30f8f8cSSatish Balay     while (1) {
600a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
601a30f8f8cSSatish Balay       if (!flg) break;
602a30f8f8cSSatish Balay 
603a30f8f8cSSatish Balay       for (i=0; i<n;) {
604a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
605a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
606a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
607a30f8f8cSSatish Balay         else       ncols = n-i;
608a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
609a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
610a30f8f8cSSatish Balay         i = j;
611a30f8f8cSSatish Balay       }
612a30f8f8cSSatish Balay     }
613a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
614a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
615a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
616a30f8f8cSSatish Balay        restore the original flags */
617a30f8f8cSSatish Balay     r1 = baij->roworiented;
618a30f8f8cSSatish Balay     r2 = a->roworiented;
61991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
620a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
621a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
62291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
623a30f8f8cSSatish Balay     while (1) {
624a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       if (!flg) break;
626a30f8f8cSSatish Balay 
627a30f8f8cSSatish Balay       for (i=0; i<n;) {
628a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
629a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
630a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
631a30f8f8cSSatish Balay         else       ncols = n-i;
632a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
633a30f8f8cSSatish Balay         i = j;
634a30f8f8cSSatish Balay       }
635a30f8f8cSSatish Balay     }
636a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
637a30f8f8cSSatish Balay     baij->roworiented = r1;
638a30f8f8cSSatish Balay     a->roworiented    = r2;
63991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
643a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
644a30f8f8cSSatish Balay 
645a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
646a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
647a30f8f8cSSatish Balay   /*
648a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
649a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
650a30f8f8cSSatish Balay   */
651a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
652a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
654c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
655a30f8f8cSSatish Balay     }
656a30f8f8cSSatish Balay   }
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
660a30f8f8cSSatish Balay   }
66191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
662a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
663a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
666a30f8f8cSSatish Balay   baij->rowvalues = 0;
6675222a1afSHong Zhang 
668a30f8f8cSSatish Balay   PetscFunctionReturn(0);
669a30f8f8cSSatish Balay }
670a30f8f8cSSatish Balay 
671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
6724a2ae208SSatish Balay #undef __FUNCT__
6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
675a30f8f8cSSatish Balay {
676a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
677dfbe8321SBarry Smith   PetscErrorCode    ierr;
678899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6791302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
68032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
681b0a32e0cSBarry Smith   PetscViewer       sviewer;
682f3ef73ceSBarry Smith   PetscViewerFormat format;
683a30f8f8cSSatish Balay 
684a30f8f8cSSatish Balay   PetscFunctionBegin;
68532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
686fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68732077d6dSBarry Smith   if (iascii) {
688b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
689456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
690a30f8f8cSSatish Balay       MatInfo info;
691a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
694899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
695899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
698a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
700b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
701a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
702a30f8f8cSSatish Balay       PetscFunctionReturn(0);
703fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
70477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
705a30f8f8cSSatish Balay       PetscFunctionReturn(0);
706c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
707c1490034SHong Zhang       PetscFunctionReturn(0);
708a30f8f8cSSatish Balay     }
709a30f8f8cSSatish Balay   }
710a30f8f8cSSatish Balay 
711a30f8f8cSSatish Balay   if (isdraw) {
712b0a32e0cSBarry Smith     PetscDraw  draw;
713a30f8f8cSSatish Balay     PetscTruth isnull;
714b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
715b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay 
718a30f8f8cSSatish Balay   if (size == 1) {
719e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
721a30f8f8cSSatish Balay   } else {
722a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
723a30f8f8cSSatish Balay     Mat          A;
72465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
72565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
726899cda47SBarry Smith     PetscInt     M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
727a30f8f8cSSatish Balay     MatScalar    *a;
728a30f8f8cSSatish Balay 
729f204ca49SKris Buschelman     /* Should this be the same type as mat? */
730f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
731a30f8f8cSSatish Balay     if (!rank) {
732f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
733a30f8f8cSSatish Balay     } else {
734f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
735a30f8f8cSSatish Balay     }
736f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
737899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
739a30f8f8cSSatish Balay 
740a30f8f8cSSatish Balay     /* copy over the A part */
74165d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
742a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7431302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
744a30f8f8cSSatish Balay 
745a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
746e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
747a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
748a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
749e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
750a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
751a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
752a30f8f8cSSatish Balay           col++; a += bs;
753a30f8f8cSSatish Balay         }
754a30f8f8cSSatish Balay       }
755a30f8f8cSSatish Balay     }
756a30f8f8cSSatish Balay     /* copy over the B part */
75765d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75865d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
759a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
760e9f7bc9eSHong Zhang 
761e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
762a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
763a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
764a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
765a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
766799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
767a30f8f8cSSatish Balay           col++; a += bs;
768a30f8f8cSSatish Balay         }
769a30f8f8cSSatish Balay       }
770a30f8f8cSSatish Balay     }
771a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
773a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
774a30f8f8cSSatish Balay     /*
775a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
776b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
777a30f8f8cSSatish Balay     */
778b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
77965d70643SHong Zhang     if (!rank) {
780e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
781a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
782a30f8f8cSSatish Balay     }
783b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
784a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   }
786a30f8f8cSSatish Balay   PetscFunctionReturn(0);
787a30f8f8cSSatish Balay }
788a30f8f8cSSatish Balay 
7894a2ae208SSatish Balay #undef __FUNCT__
7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
791dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
792a30f8f8cSSatish Balay {
793dfbe8321SBarry Smith   PetscErrorCode ierr;
79432077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
795a30f8f8cSSatish Balay 
796a30f8f8cSSatish Balay   PetscFunctionBegin;
79732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
798fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
799b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
800fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
80132077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
802a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
803a30f8f8cSSatish Balay   } else {
8041302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
805a30f8f8cSSatish Balay   }
806a30f8f8cSSatish Balay   PetscFunctionReturn(0);
807a30f8f8cSSatish Balay }
808a30f8f8cSSatish Balay 
8094a2ae208SSatish Balay #undef __FUNCT__
8104a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
811dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
812a30f8f8cSSatish Balay {
813a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
814dfbe8321SBarry Smith   PetscErrorCode ierr;
815a30f8f8cSSatish Balay 
816a30f8f8cSSatish Balay   PetscFunctionBegin;
817a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
818899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
819a30f8f8cSSatish Balay #endif
820a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
821a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
822a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
823a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
824a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
825a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
826a30f8f8cSSatish Balay #else
82705b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
828a30f8f8cSSatish Balay #endif
82905b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
830a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
831a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
83240781036SHong Zhang   if (baij->slvec0) {
83340781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
83440781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
83540781036SHong Zhang   }
83640781036SHong Zhang   if (baij->slvec1) {
83740781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83840781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83940781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
84040781036SHong Zhang   }
84140781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
84205b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
84305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
84405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
845a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
84605b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
847a30f8f8cSSatish Balay #endif
84859ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
84959ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
850899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
851a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
852901853e0SKris Buschelman 
853*dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
854901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
855901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
856901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
857901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
858a30f8f8cSSatish Balay   PetscFunctionReturn(0);
859a30f8f8cSSatish Balay }
860a30f8f8cSSatish Balay 
8614a2ae208SSatish Balay #undef __FUNCT__
862a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
863dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
864a9d4b620SHong Zhang {
865a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
866dfbe8321SBarry Smith   PetscErrorCode ierr;
867899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
868a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
869a9d4b620SHong Zhang 
870a9d4b620SHong Zhang   PetscFunctionBegin;
871a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
872899cda47SBarry Smith   if (nt != A->cmap.n) {
873a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
874a9d4b620SHong Zhang   }
875a9d4b620SHong Zhang 
876a9d4b620SHong Zhang   /* diagonal part */
877a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8782dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
879a9d4b620SHong Zhang 
880a9d4b620SHong Zhang   /* subdiagonal part */
881a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
882899cda47SBarry Smith   CHKMEMQ;
883a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8841ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8851ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
886899cda47SBarry Smith   CHKMEMQ;
887a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
888899cda47SBarry Smith   CHKMEMQ;
8891ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
890a9d4b620SHong Zhang 
891899cda47SBarry Smith   CHKMEMQ;
892a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
893899cda47SBarry Smith   CHKMEMQ;
8941ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
895899cda47SBarry Smith   CHKMEMQ;
896a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
897899cda47SBarry Smith     CHKMEMQ;
898a9d4b620SHong Zhang   /* supperdiagonal part */
899a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
900899cda47SBarry Smith     CHKMEMQ;
901a9d4b620SHong Zhang   PetscFunctionReturn(0);
902a9d4b620SHong Zhang }
903a9d4b620SHong Zhang 
904a9d4b620SHong Zhang #undef __FUNCT__
90540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
906dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
907a30f8f8cSSatish Balay {
908a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
909dfbe8321SBarry Smith   PetscErrorCode ierr;
9101302d50aSBarry Smith   PetscInt       nt;
911a30f8f8cSSatish Balay 
912a30f8f8cSSatish Balay   PetscFunctionBegin;
913a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
914899cda47SBarry Smith   if (nt != A->cmap.n) {
91529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
916a30f8f8cSSatish Balay   }
917a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
918899cda47SBarry Smith   if (nt != A->rmap.N) {
91929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
920a30f8f8cSSatish Balay   }
92165d70643SHong Zhang 
922b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
923b941877fSHong Zhang   /* do diagonal part */
924b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
925b941877fSHong Zhang   /* do supperdiagonal part */
926b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
927b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
928b941877fSHong Zhang   /* do subdiagonal part */
929b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
930b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
931b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
93265d70643SHong Zhang 
933a30f8f8cSSatish Balay   PetscFunctionReturn(0);
934a30f8f8cSSatish Balay }
935a30f8f8cSSatish Balay 
9364a2ae208SSatish Balay #undef __FUNCT__
9374a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
938dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
939a30f8f8cSSatish Balay {
940de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
941dfbe8321SBarry Smith   PetscErrorCode ierr;
942899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
943a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
944a9d4b620SHong Zhang 
945a9d4b620SHong Zhang   PetscFunctionBegin;
946a9d4b620SHong Zhang   /*
94756faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
94856faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
949a9d4b620SHong Zhang   */
950a9d4b620SHong Zhang   /* diagonal part */
951a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9522dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
953a9d4b620SHong Zhang 
954a9d4b620SHong Zhang   /* subdiagonal part */
955a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
956a9d4b620SHong Zhang 
957a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9581ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9591ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
960a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9611ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
962a9d4b620SHong Zhang 
963a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9641ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
965a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
966a9d4b620SHong Zhang 
967a9d4b620SHong Zhang   /* supperdiagonal part */
968a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
969a9d4b620SHong Zhang 
970a9d4b620SHong Zhang   PetscFunctionReturn(0);
971a9d4b620SHong Zhang }
972a9d4b620SHong Zhang 
973a9d4b620SHong Zhang #undef __FUNCT__
974a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
975dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
976a9d4b620SHong Zhang {
977a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
978dfbe8321SBarry Smith   PetscErrorCode ierr;
979a30f8f8cSSatish Balay 
980a30f8f8cSSatish Balay   PetscFunctionBegin;
981b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
982b941877fSHong Zhang   /* do diagonal part */
983b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
984b941877fSHong Zhang   /* do supperdiagonal part */
985b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
986de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
987de8b6608SHong Zhang 
988b941877fSHong Zhang   /* do subdiagonal part */
989a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
990a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
991a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
992aa482183SHong Zhang 
993a30f8f8cSSatish Balay   PetscFunctionReturn(0);
994a30f8f8cSSatish Balay }
995a30f8f8cSSatish Balay 
996a30f8f8cSSatish Balay /*
997a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
998a30f8f8cSSatish Balay    diagonal block
999a30f8f8cSSatish Balay */
10004a2ae208SSatish Balay #undef __FUNCT__
10014a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1002dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1003a30f8f8cSSatish Balay {
1004a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1005dfbe8321SBarry Smith   PetscErrorCode ierr;
1006a30f8f8cSSatish Balay 
1007a30f8f8cSSatish Balay   PetscFunctionBegin;
1008899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1009a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1010a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1011a30f8f8cSSatish Balay }
1012a30f8f8cSSatish Balay 
10134a2ae208SSatish Balay #undef __FUNCT__
10144a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1015f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1016a30f8f8cSSatish Balay {
1017a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1018dfbe8321SBarry Smith   PetscErrorCode ierr;
1019a30f8f8cSSatish Balay 
1020a30f8f8cSSatish Balay   PetscFunctionBegin;
1021f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1022f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1023a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1024a30f8f8cSSatish Balay }
1025a30f8f8cSSatish Balay 
10264a2ae208SSatish Balay #undef __FUNCT__
10274a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10281302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1029a30f8f8cSSatish Balay {
1030d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1031d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1032d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1033899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1034899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1035899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1036d0d4cfc2SHong Zhang 
1037a30f8f8cSSatish Balay   PetscFunctionBegin;
1038d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1039d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1040d0d4cfc2SHong Zhang 
1041d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1042d0d4cfc2SHong Zhang     /*
1043d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1044d0d4cfc2SHong Zhang     */
1045d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1046d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1047d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1048d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1049d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1050d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1051d0d4cfc2SHong Zhang     }
1052d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1053d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1054d0d4cfc2SHong Zhang   }
1055d0d4cfc2SHong Zhang 
1056d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1057d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1058d0d4cfc2SHong Zhang 
1059d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1060d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1061d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1062d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1063d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1064d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1065d0d4cfc2SHong Zhang 
1066d0d4cfc2SHong Zhang   cmap  = mat->garray;
1067d0d4cfc2SHong Zhang   if (v  || idx) {
1068d0d4cfc2SHong Zhang     if (nztot) {
1069d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1070d0d4cfc2SHong Zhang       PetscInt imark = -1;
1071d0d4cfc2SHong Zhang       if (v) {
1072d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1073d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1074d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1075d0d4cfc2SHong Zhang           else break;
1076d0d4cfc2SHong Zhang         }
1077d0d4cfc2SHong Zhang         imark = i;
1078d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1079d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1080d0d4cfc2SHong Zhang       }
1081d0d4cfc2SHong Zhang       if (idx) {
1082d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1083d0d4cfc2SHong Zhang         if (imark > -1) {
1084d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1085d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1086d0d4cfc2SHong Zhang           }
1087d0d4cfc2SHong Zhang         } else {
1088d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1089d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1090d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1091d0d4cfc2SHong Zhang             else break;
1092d0d4cfc2SHong Zhang           }
1093d0d4cfc2SHong Zhang           imark = i;
1094d0d4cfc2SHong Zhang         }
1095d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1096d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1097d0d4cfc2SHong Zhang       }
1098d0d4cfc2SHong Zhang     } else {
1099d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1100d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1101d0d4cfc2SHong Zhang     }
1102d0d4cfc2SHong Zhang   }
1103d0d4cfc2SHong Zhang   *nz = nztot;
1104d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1105d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1106a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1107a30f8f8cSSatish Balay }
1108a30f8f8cSSatish Balay 
11094a2ae208SSatish Balay #undef __FUNCT__
11104a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11111302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1112a30f8f8cSSatish Balay {
1113a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1114a30f8f8cSSatish Balay 
1115a30f8f8cSSatish Balay   PetscFunctionBegin;
1116abc0a331SBarry Smith   if (!baij->getrowactive) {
1117abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1118a30f8f8cSSatish Balay   }
1119a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1120a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1121a30f8f8cSSatish Balay }
1122a30f8f8cSSatish Balay 
11234a2ae208SSatish Balay #undef __FUNCT__
1124d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1125d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1126d0d4cfc2SHong Zhang {
1127d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1128d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1129d0d4cfc2SHong Zhang 
1130d0d4cfc2SHong Zhang   PetscFunctionBegin;
1131d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1132d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1133d0d4cfc2SHong Zhang }
1134d0d4cfc2SHong Zhang #undef __FUNCT__
1135d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1136d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1137d0d4cfc2SHong Zhang {
1138d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1139d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1140d0d4cfc2SHong Zhang 
1141d0d4cfc2SHong Zhang   PetscFunctionBegin;
1142d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1143d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1144d0d4cfc2SHong Zhang }
1145d0d4cfc2SHong Zhang 
1146d0d4cfc2SHong Zhang #undef __FUNCT__
114799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
114899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
114999cafbc1SBarry Smith {
115099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
115199cafbc1SBarry Smith   PetscErrorCode ierr;
115299cafbc1SBarry Smith 
115399cafbc1SBarry Smith   PetscFunctionBegin;
115499cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
115599cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
115699cafbc1SBarry Smith   PetscFunctionReturn(0);
115799cafbc1SBarry Smith }
115899cafbc1SBarry Smith 
115999cafbc1SBarry Smith #undef __FUNCT__
116099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
116199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
116299cafbc1SBarry Smith {
116399cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
116499cafbc1SBarry Smith   PetscErrorCode ierr;
116599cafbc1SBarry Smith 
116699cafbc1SBarry Smith   PetscFunctionBegin;
116799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
116899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
116999cafbc1SBarry Smith   PetscFunctionReturn(0);
117099cafbc1SBarry Smith }
117199cafbc1SBarry Smith 
117299cafbc1SBarry Smith #undef __FUNCT__
11734a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1174dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1175a30f8f8cSSatish Balay {
1176a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1177dfbe8321SBarry Smith   PetscErrorCode ierr;
1178a30f8f8cSSatish Balay 
1179a30f8f8cSSatish Balay   PetscFunctionBegin;
1180a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1181a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1182a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1183a30f8f8cSSatish Balay }
1184a30f8f8cSSatish Balay 
11854a2ae208SSatish Balay #undef __FUNCT__
11864a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1187dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1188a30f8f8cSSatish Balay {
1189a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1190a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1191dfbe8321SBarry Smith   PetscErrorCode ierr;
1192a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1193a30f8f8cSSatish Balay 
1194a30f8f8cSSatish Balay   PetscFunctionBegin;
1195899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1196a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1197a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1198a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1199a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1200a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1201a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1202a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1203a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1204a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1205a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1206a30f8f8cSSatish Balay     info->memory       = isend[3];
1207a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1208a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1209d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1210a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1211a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1212a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1213a30f8f8cSSatish Balay     info->memory       = irecv[3];
1214a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1215a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1216d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1217a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1218a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1219a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1220a30f8f8cSSatish Balay     info->memory       = irecv[3];
1221a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1222a30f8f8cSSatish Balay   } else {
122377431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1224a30f8f8cSSatish Balay   }
1225899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1226899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1227899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1228899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1229a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1230a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1231a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1232a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1233a30f8f8cSSatish Balay }
1234a30f8f8cSSatish Balay 
12354a2ae208SSatish Balay #undef __FUNCT__
12364a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1237dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1238a30f8f8cSSatish Balay {
1239a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1240d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1241dfbe8321SBarry Smith   PetscErrorCode ierr;
1242a30f8f8cSSatish Balay 
1243a30f8f8cSSatish Balay   PetscFunctionBegin;
1244e98b92d7SKris Buschelman   switch (op) {
1245e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1246e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1247e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1248e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1249e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1250e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1251e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1252a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1253a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1254e98b92d7SKris Buschelman     break;
1255e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1256a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1257a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1258a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1259e98b92d7SKris Buschelman     break;
1260e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1261e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1262e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1263290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1264e98b92d7SKris Buschelman     break;
1265e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1266a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1267a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1268a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1269e98b92d7SKris Buschelman     break;
1270e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1271a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1272e98b92d7SKris Buschelman     break;
1273e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
127429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1275e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1276a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1277e98b92d7SKris Buschelman     break;
12789a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12799a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12809a4540c5SBarry Smith   case MAT_HERMITIAN:
12819a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
128277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
128377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12849a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12859a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12869a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
1287290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
128877e54ba9SKris Buschelman     break;
1289d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
1290d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_TRUE;
1291d0d4cfc2SHong Zhang     break;
1292d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
1293d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_FALSE;
1294d0d4cfc2SHong Zhang     break;
1295d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
1296d0d4cfc2SHong Zhang     aA->getrow_utriangular = PETSC_TRUE;
1297d0d4cfc2SHong Zhang     break;
1298e98b92d7SKris Buschelman   default:
1299ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1300a30f8f8cSSatish Balay   }
1301a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1302a30f8f8cSSatish Balay }
1303a30f8f8cSSatish Balay 
13044a2ae208SSatish Balay #undef __FUNCT__
13058115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1306dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1307a30f8f8cSSatish Balay {
1308dfbe8321SBarry Smith   PetscErrorCode ierr;
1309a30f8f8cSSatish Balay   PetscFunctionBegin;
1310999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13118115998fSBarry Smith   PetscFunctionReturn(0);
1312a30f8f8cSSatish Balay }
1313a30f8f8cSSatish Balay 
13144a2ae208SSatish Balay #undef __FUNCT__
13154a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1316dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1317a30f8f8cSSatish Balay {
1318a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1319a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1320dfbe8321SBarry Smith   PetscErrorCode ierr;
13215e90f9d9SHong Zhang   PetscInt       nv,m,n;
1322b3bf805bSHong Zhang   PetscTruth     flg;
1323a30f8f8cSSatish Balay 
1324a30f8f8cSSatish Balay   PetscFunctionBegin;
1325a30f8f8cSSatish Balay   if (ll != rr){
1326b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1327b3bf805bSHong Zhang     if (!flg)
132829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1329a30f8f8cSSatish Balay   }
1330b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1331b3bf805bSHong Zhang 
13325e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
13335e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1334b3bf805bSHong Zhang 
13355e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
13365e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13375e90f9d9SHong Zhang 
1338a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
13395e90f9d9SHong Zhang 
13405e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1341a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13425e90f9d9SHong Zhang 
13435e90f9d9SHong Zhang   /* scale the diagonal part */
1344a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1345a30f8f8cSSatish Balay 
13465e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1347a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1348a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1349a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1350a30f8f8cSSatish Balay }
1351a30f8f8cSSatish Balay 
13524a2ae208SSatish Balay #undef __FUNCT__
13534a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1354dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1355a30f8f8cSSatish Balay {
1356f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1357dfbe8321SBarry Smith   PetscErrorCode ierr;
1358a30f8f8cSSatish Balay 
1359a30f8f8cSSatish Balay   PetscFunctionBegin;
1360a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1361a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1362a30f8f8cSSatish Balay }
1363a30f8f8cSSatish Balay 
13646849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1365a30f8f8cSSatish Balay 
13664a2ae208SSatish Balay #undef __FUNCT__
13674a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1368dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1369a30f8f8cSSatish Balay {
1370a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1371a30f8f8cSSatish Balay   Mat            a,b,c,d;
1372a30f8f8cSSatish Balay   PetscTruth     flg;
1373dfbe8321SBarry Smith   PetscErrorCode ierr;
1374a30f8f8cSSatish Balay 
1375a30f8f8cSSatish Balay   PetscFunctionBegin;
1376a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1377a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1378a30f8f8cSSatish Balay 
1379a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1380abc0a331SBarry Smith   if (flg) {
1381a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1382a30f8f8cSSatish Balay   }
1383a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1384a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1385a30f8f8cSSatish Balay }
1386a30f8f8cSSatish Balay 
13874a2ae208SSatish Balay #undef __FUNCT__
13883c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13893c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13903c896bc6SHong Zhang {
13913c896bc6SHong Zhang   PetscErrorCode ierr;
13923c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13933c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13943c896bc6SHong Zhang 
13953c896bc6SHong Zhang   PetscFunctionBegin;
13963c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13973c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1398d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13993c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1400d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
14013c896bc6SHong Zhang   } else {
14023c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14033c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14043c896bc6SHong Zhang   }
14053c896bc6SHong Zhang   PetscFunctionReturn(0);
14063c896bc6SHong Zhang }
14073c896bc6SHong Zhang 
14083c896bc6SHong Zhang #undef __FUNCT__
14094a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1410dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1411273d9f13SBarry Smith {
1412dfbe8321SBarry Smith   PetscErrorCode ierr;
1413273d9f13SBarry Smith 
1414273d9f13SBarry Smith   PetscFunctionBegin;
14157edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1416273d9f13SBarry Smith   PetscFunctionReturn(0);
1417273d9f13SBarry Smith }
1418a5e6ed63SBarry Smith 
14194fe895cdSHong Zhang #include "petscblaslapack.h"
14204fe895cdSHong Zhang #undef __FUNCT__
14214fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14224fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14234fe895cdSHong Zhang {
14244fe895cdSHong Zhang   PetscErrorCode ierr;
14254fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
14264fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14274fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14284fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14294fe895cdSHong Zhang 
14304fe895cdSHong Zhang   PetscFunctionBegin;
14314fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14324fe895cdSHong Zhang     PetscScalar alpha = a;
14334fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
14344fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
14354fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
14364fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
14374fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
14384fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
14394fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
14404fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
14414fe895cdSHong Zhang   } else {
1442d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14434fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1444d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14454fe895cdSHong Zhang   }
14464fe895cdSHong Zhang   PetscFunctionReturn(0);
14474fe895cdSHong Zhang }
14484fe895cdSHong Zhang 
1449a5e6ed63SBarry Smith #undef __FUNCT__
1450a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14511302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1452a5e6ed63SBarry Smith {
14536849ba73SBarry Smith   PetscErrorCode ierr;
14541302d50aSBarry Smith   PetscInt       i;
1455a5e6ed63SBarry Smith   PetscTruth     flg;
1456a5e6ed63SBarry Smith 
14576849ba73SBarry Smith   PetscFunctionBegin;
1458a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1459a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1460a5e6ed63SBarry Smith     if (!flg) {
14611302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1462a5e6ed63SBarry Smith     }
1463a5e6ed63SBarry Smith   }
1464a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1465a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1466a5e6ed63SBarry Smith }
1467a5e6ed63SBarry Smith 
1468a5e6ed63SBarry Smith 
1469a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1470a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1471a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1472a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1473a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1474a9d4b620SHong Zhang        MatMult_MPISBAIJ,
147597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1476431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1477431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
148197304618SKris Buschelman /*10*/ 0,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        0,
14842798e883SHong Zhang        MatRelax_MPISBAIJ,
1485a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
148697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1487a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1488a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1489a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1490a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
149197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1492a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1495a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1496dcf5cc72SBarry Smith /*25*/ 0,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        0,
1500a30f8f8cSSatish Balay        0,
150197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1502b5df2d14SHong Zhang        0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        0,
150697304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1507a30f8f8cSSatish Balay        0,
1508a30f8f8cSSatish Balay        0,
1509a30f8f8cSSatish Balay        0,
1510a30f8f8cSSatish Balay        0,
15114fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1512a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1513d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1514a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
15153c896bc6SHong Zhang        MatCopy_MPISBAIJ,
15168c07d4e3SBarry Smith /*45*/ 0,
1517a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1518a30f8f8cSSatish Balay        0,
1519a30f8f8cSSatish Balay        0,
1520a30f8f8cSSatish Balay        0,
1521521d7252SBarry Smith /*50*/ 0,
1522a30f8f8cSSatish Balay        0,
1523a30f8f8cSSatish Balay        0,
1524a30f8f8cSSatish Balay        0,
1525a30f8f8cSSatish Balay        0,
152697304618SKris Buschelman /*55*/ 0,
1527a30f8f8cSSatish Balay        0,
1528a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1529a30f8f8cSSatish Balay        0,
1530a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
153197304618SKris Buschelman /*60*/ 0,
1532a30f8f8cSSatish Balay        0,
1533a30f8f8cSSatish Balay        0,
1534357abbc8SBarry Smith        0,
153524d5174aSHong Zhang        0,
153697304618SKris Buschelman /*65*/ 0,
153724d5174aSHong Zhang        0,
153824d5174aSHong Zhang        0,
153924d5174aSHong Zhang        0,
154024d5174aSHong Zhang        0,
154197304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
154224d5174aSHong Zhang        0,
154397304618SKris Buschelman        0,
154497304618SKris Buschelman        0,
154597304618SKris Buschelman        0,
154697304618SKris Buschelman /*75*/ 0,
154797304618SKris Buschelman        0,
154897304618SKris Buschelman        0,
154997304618SKris Buschelman        0,
155097304618SKris Buschelman        0,
155197304618SKris Buschelman /*80*/ 0,
155297304618SKris Buschelman        0,
155397304618SKris Buschelman        0,
155497304618SKris Buschelman        0,
1555865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1556865e5f61SKris Buschelman /*85*/ 0,
1557865e5f61SKris Buschelman        0,
1558865e5f61SKris Buschelman        0,
1559865e5f61SKris Buschelman        0,
1560865e5f61SKris Buschelman        0,
1561865e5f61SKris Buschelman /*90*/ 0,
1562865e5f61SKris Buschelman        0,
1563865e5f61SKris Buschelman        0,
1564865e5f61SKris Buschelman        0,
1565865e5f61SKris Buschelman        0,
1566865e5f61SKris Buschelman /*95*/ 0,
1567865e5f61SKris Buschelman        0,
1568865e5f61SKris Buschelman        0,
156999cafbc1SBarry Smith        0,
157099cafbc1SBarry Smith        0,
157199cafbc1SBarry Smith /*100*/0,
157299cafbc1SBarry Smith        0,
157399cafbc1SBarry Smith        0,
157499cafbc1SBarry Smith        0,
157599cafbc1SBarry Smith        0,
157699cafbc1SBarry Smith /*105*/0,
157799cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1578d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1579d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1580d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
158199cafbc1SBarry Smith };
1582a30f8f8cSSatish Balay 
1583a30f8f8cSSatish Balay 
1584a30f8f8cSSatish Balay EXTERN_C_BEGIN
15854a2ae208SSatish Balay #undef __FUNCT__
15864a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1587be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1588a30f8f8cSSatish Balay {
1589a30f8f8cSSatish Balay   PetscFunctionBegin;
1590a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1591a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1592a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1593a30f8f8cSSatish Balay }
1594a30f8f8cSSatish Balay EXTERN_C_END
1595a30f8f8cSSatish Balay 
1596273d9f13SBarry Smith EXTERN_C_BEGIN
15974a2ae208SSatish Balay #undef __FUNCT__
1598a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1599be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1600a23d5eceSKris Buschelman {
1601a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1602dfbe8321SBarry Smith   PetscErrorCode ierr;
16031302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1604a23d5eceSKris Buschelman 
1605a23d5eceSKris Buschelman   PetscFunctionBegin;
160677925062SSatish Balay   ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
16078c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
16088c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1609a23d5eceSKris Buschelman 
1610a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1611a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1612a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
161377431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
161477431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1615899cda47SBarry Smith 
1616899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
1617899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
1618899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
1619899cda47SBarry Smith 
1620a23d5eceSKris Buschelman   if (d_nnz) {
1621899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
162277431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1623a23d5eceSKris Buschelman     }
1624a23d5eceSKris Buschelman   }
1625a23d5eceSKris Buschelman   if (o_nnz) {
1626899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
162777431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1628a23d5eceSKris Buschelman     }
1629a23d5eceSKris Buschelman   }
1630a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1631a23d5eceSKris Buschelman 
1632a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1633899cda47SBarry Smith   mbs = B->rmap.n/bs;
1634899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1635899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1636899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1637a23d5eceSKris Buschelman   }
1638a23d5eceSKris Buschelman 
1639899cda47SBarry Smith   B->rmap.bs  = bs;
1640a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1641a23d5eceSKris Buschelman   b->mbs = mbs;
1642a23d5eceSKris Buschelman   b->nbs = mbs;
1643a23d5eceSKris Buschelman   b->Mbs = Mbs;
1644a23d5eceSKris Buschelman   b->Nbs = Mbs;
1645a23d5eceSKris Buschelman 
1646a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1647899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1648a23d5eceSKris Buschelman   }
1649899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1650899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1651a23d5eceSKris Buschelman 
1652899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1653899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1654a23d5eceSKris Buschelman 
1655f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1656899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
16579c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1658c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
165952e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
16609c097c71SKris Buschelman 
1661f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1662899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
16634aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1664589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
166552e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1666a23d5eceSKris Buschelman 
1667a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1668a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1669a23d5eceSKris Buschelman 
1670a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1671a23d5eceSKris Buschelman }
1672a23d5eceSKris Buschelman EXTERN_C_END
1673a23d5eceSKris Buschelman 
16740bad9183SKris Buschelman /*MC
1675fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16760bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16770bad9183SKris Buschelman 
16780bad9183SKris Buschelman    Options Database Keys:
16790bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16800bad9183SKris Buschelman 
16810bad9183SKris Buschelman   Level: beginner
16820bad9183SKris Buschelman 
16830bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16840bad9183SKris Buschelman M*/
16850bad9183SKris Buschelman 
1686a23d5eceSKris Buschelman EXTERN_C_BEGIN
1687a23d5eceSKris Buschelman #undef __FUNCT__
16884a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1689be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1690b5df2d14SHong Zhang {
1691b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1692dfbe8321SBarry Smith   PetscErrorCode ierr;
1693b5df2d14SHong Zhang   PetscTruth     flg;
1694b5df2d14SHong Zhang 
1695b5df2d14SHong Zhang   PetscFunctionBegin;
1696b5df2d14SHong Zhang 
1697b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1698b0a32e0cSBarry Smith   B->data = (void*)b;
1699b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1700b5df2d14SHong Zhang 
1701b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1702b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1703b5df2d14SHong Zhang   B->mapping    = 0;
1704b5df2d14SHong Zhang   B->factor     = 0;
1705b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1706b5df2d14SHong Zhang 
1707b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1708b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1709b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1712899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1713b5df2d14SHong Zhang 
1714b5df2d14SHong Zhang   /* build cache for off array entries formed */
1715b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1716b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1717b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1718b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1719b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1720b5df2d14SHong Zhang 
1721f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1722b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
172364a35ccbSBarry Smith   b->setvalueslen     = 0;
1724b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1725b5df2d14SHong Zhang #endif
1726b5df2d14SHong Zhang 
1727b5df2d14SHong Zhang   /* stuff used in block assembly */
1728b5df2d14SHong Zhang   b->barray       = 0;
1729b5df2d14SHong Zhang 
1730b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1731b5df2d14SHong Zhang   b->lvec         = 0;
1732b5df2d14SHong Zhang   b->Mvctx        = 0;
173340781036SHong Zhang   b->slvec0       = 0;
173440781036SHong Zhang   b->slvec0b      = 0;
173540781036SHong Zhang   b->slvec1       = 0;
173640781036SHong Zhang   b->slvec1a      = 0;
173740781036SHong Zhang   b->slvec1b      = 0;
173840781036SHong Zhang   b->sMvctx       = 0;
1739b5df2d14SHong Zhang 
1740b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1741b5df2d14SHong Zhang   b->rowindices   = 0;
1742b5df2d14SHong Zhang   b->rowvalues    = 0;
1743b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1744b5df2d14SHong Zhang 
1745b5df2d14SHong Zhang   /* hash table stuff */
1746b5df2d14SHong Zhang   b->ht           = 0;
1747b5df2d14SHong Zhang   b->hd           = 0;
1748b5df2d14SHong Zhang   b->ht_size      = 0;
1749b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1750b5df2d14SHong Zhang   b->ht_fact      = 0;
1751b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1752b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1753b5df2d14SHong Zhang 
175459ffdab8SBarry Smith   b->in_loc       = 0;
175559ffdab8SBarry Smith   b->v_loc        = 0;
175659ffdab8SBarry Smith   b->n_loc        = 0;
175777925062SSatish Balay   ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17588c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1759b5df2d14SHong Zhang     if (flg) {
1760f6275e2eSBarry Smith       PetscReal fact = 1.39;
1761b5df2d14SHong Zhang       ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
17628c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1763b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1764b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1765ae15b995SBarry Smith       ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1766b5df2d14SHong Zhang     }
17678c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17688c07d4e3SBarry Smith 
1769b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1770b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1771b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1772b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1773b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1774b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1775b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1776b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1777b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1778a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1779a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1780a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
178123ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
178223ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178323ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178423ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1786b5df2d14SHong Zhang   PetscFunctionReturn(0);
1787b5df2d14SHong Zhang }
1788273d9f13SBarry Smith EXTERN_C_END
1789b5df2d14SHong Zhang 
1790209238afSKris Buschelman /*MC
1791002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1792209238afSKris Buschelman 
1793209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1794209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1795209238afSKris Buschelman 
1796209238afSKris Buschelman    Options Database Keys:
1797209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1798209238afSKris Buschelman 
1799209238afSKris Buschelman   Level: beginner
1800209238afSKris Buschelman 
1801209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1802209238afSKris Buschelman M*/
1803209238afSKris Buschelman 
1804209238afSKris Buschelman EXTERN_C_BEGIN
1805209238afSKris Buschelman #undef __FUNCT__
1806209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1807be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1808dfbe8321SBarry Smith {
18096849ba73SBarry Smith   PetscErrorCode ierr;
18101302d50aSBarry Smith   PetscMPIInt    size;
1811209238afSKris Buschelman 
1812209238afSKris Buschelman   PetscFunctionBegin;
1813209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1814209238afSKris Buschelman   if (size == 1) {
1815209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1816209238afSKris Buschelman   } else {
1817209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1818209238afSKris Buschelman   }
1819209238afSKris Buschelman   PetscFunctionReturn(0);
1820209238afSKris Buschelman }
1821209238afSKris Buschelman EXTERN_C_END
1822209238afSKris Buschelman 
18234a2ae208SSatish Balay #undef __FUNCT__
18244a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1825b5df2d14SHong Zhang /*@C
1826b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1827b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1828b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1829b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1830b5df2d14SHong Zhang 
1831b5df2d14SHong Zhang    Collective on Mat
1832b5df2d14SHong Zhang 
1833b5df2d14SHong Zhang    Input Parameters:
1834b5df2d14SHong Zhang +  A - the matrix
1835b5df2d14SHong Zhang .  bs   - size of blockk
1836b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1837b5df2d14SHong Zhang            submatrix  (same for all local rows)
1838b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18396d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18406d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18416d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1842b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1843b5df2d14SHong Zhang            submatrix (same for all local rows).
1844b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1845b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1846b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang    Options Database Keys:
1850b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1851b5df2d14SHong Zhang                      block calculations (much slower)
1852b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1853b5df2d14SHong Zhang 
1854b5df2d14SHong Zhang    Notes:
1855b5df2d14SHong Zhang 
1856b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1857b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1858b5df2d14SHong Zhang 
185949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
186049a6f317SBarry Smith 
1861b5df2d14SHong Zhang    Storage Information:
1862b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1863b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1864b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1865b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1868b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1869b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1870b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1871b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1872b5df2d14SHong Zhang 
1873b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1874b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1875b5df2d14SHong Zhang 
1876b5df2d14SHong Zhang .vb
1877b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1878b5df2d14SHong Zhang           -------------------
1879b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1880b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1881b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1882b5df2d14SHong Zhang           -------------------
1883b5df2d14SHong Zhang .ve
1884b5df2d14SHong Zhang 
1885b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1886b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18876d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18886d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1889b5df2d14SHong Zhang 
18906d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18916d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1892b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1893b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1894b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1895b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1896b5df2d14SHong Zhang    matrices.
1897b5df2d14SHong Zhang 
1898b5df2d14SHong Zhang    Level: intermediate
1899b5df2d14SHong Zhang 
1900b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1901b5df2d14SHong Zhang 
1902b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1903b5df2d14SHong Zhang @*/
1904be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1905b5df2d14SHong Zhang {
19061302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1907b5df2d14SHong Zhang 
1908b5df2d14SHong Zhang   PetscFunctionBegin;
1909a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1910a23d5eceSKris Buschelman   if (f) {
1911a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1912b5df2d14SHong Zhang   }
1913b5df2d14SHong Zhang   PetscFunctionReturn(0);
1914b5df2d14SHong Zhang }
1915b5df2d14SHong Zhang 
19164a2ae208SSatish Balay #undef __FUNCT__
19174a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1918a30f8f8cSSatish Balay /*@C
1919a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1920a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1921a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1922a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1923a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1924a30f8f8cSSatish Balay 
1925a30f8f8cSSatish Balay    Collective on MPI_Comm
1926a30f8f8cSSatish Balay 
1927a30f8f8cSSatish Balay    Input Parameters:
1928a30f8f8cSSatish Balay +  comm - MPI communicator
1929a30f8f8cSSatish Balay .  bs   - size of blockk
1930a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1931a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1932a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1933a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1934a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1935a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1936a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1937a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1938a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1939a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1940a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19416d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19426d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19436d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1944a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1945a30f8f8cSSatish Balay            submatrix (same for all local rows).
1946a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1947a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1948a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1949a30f8f8cSSatish Balay 
1950a30f8f8cSSatish Balay    Output Parameter:
1951a30f8f8cSSatish Balay .  A - the matrix
1952a30f8f8cSSatish Balay 
1953a30f8f8cSSatish Balay    Options Database Keys:
1954a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1955a30f8f8cSSatish Balay                      block calculations (much slower)
1956a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1957a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1958a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1959a30f8f8cSSatish Balay 
1960a30f8f8cSSatish Balay    Notes:
1961d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1962d1be2dadSMatthew Knepley 
1963a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1964a30f8f8cSSatish Balay    (possibly both).
1965a30f8f8cSSatish Balay 
1966a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1967a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1968a30f8f8cSSatish Balay 
196949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
197049a6f317SBarry Smith 
1971a30f8f8cSSatish Balay    Storage Information:
1972a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1973a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1974a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1975a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1978a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1979a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1980a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1981a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1982a30f8f8cSSatish Balay 
1983a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1984a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1985a30f8f8cSSatish Balay 
1986a30f8f8cSSatish Balay .vb
1987a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1988a30f8f8cSSatish Balay           -------------------
1989a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1990a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1991a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1992a30f8f8cSSatish Balay           -------------------
1993a30f8f8cSSatish Balay .ve
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1996a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19976d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19986d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1999a30f8f8cSSatish Balay 
20006d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20016d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2002a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2003a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2004a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2005a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2006a30f8f8cSSatish Balay    matrices.
2007a30f8f8cSSatish Balay 
2008a30f8f8cSSatish Balay    Level: intermediate
2009a30f8f8cSSatish Balay 
2010a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2011a30f8f8cSSatish Balay 
2012a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2013a30f8f8cSSatish Balay @*/
2014a30f8f8cSSatish Balay 
2015be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2016a30f8f8cSSatish Balay {
20176849ba73SBarry Smith   PetscErrorCode ierr;
20181302d50aSBarry Smith   PetscMPIInt    size;
2019a30f8f8cSSatish Balay 
2020a30f8f8cSSatish Balay   PetscFunctionBegin;
2021f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2022f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2023273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2024273d9f13SBarry Smith   if (size > 1) {
2025b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2026b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2027273d9f13SBarry Smith   } else {
2028273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2029273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2030273d9f13SBarry Smith   }
2031a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2032a30f8f8cSSatish Balay }
2033a30f8f8cSSatish Balay 
2034a30f8f8cSSatish Balay 
20354a2ae208SSatish Balay #undef __FUNCT__
20364a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20376849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2038a30f8f8cSSatish Balay {
2039a30f8f8cSSatish Balay   Mat            mat;
2040a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2041dfbe8321SBarry Smith   PetscErrorCode ierr;
2042899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
2043387bc808SHong Zhang   PetscScalar    *array;
2044a30f8f8cSSatish Balay 
2045a30f8f8cSSatish Balay   PetscFunctionBegin;
2046a30f8f8cSSatish Balay   *newmat       = 0;
2047f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2048899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2049be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20501d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2051899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2052899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2053e1b6402fSHong Zhang 
205482327fa8SHong Zhang   mat->factor       = matin->factor;
2055273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
205682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20577fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20587fff6886SHong Zhang 
2059b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2060a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2061a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2062a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2063a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2064a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2065a30f8f8cSSatish Balay 
2066899cda47SBarry Smith 
2067a30f8f8cSSatish Balay   a->size         = oldmat->size;
2068a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2069a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2070a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2071a30f8f8cSSatish Balay   a->rowindices   = 0;
2072a30f8f8cSSatish Balay   a->rowvalues    = 0;
2073a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2074a30f8f8cSSatish Balay   a->barray       = 0;
2075899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2076899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2077899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2078899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2079a30f8f8cSSatish Balay 
2080a30f8f8cSSatish Balay   /* hash table stuff */
2081a30f8f8cSSatish Balay   a->ht           = 0;
2082a30f8f8cSSatish Balay   a->hd           = 0;
2083a30f8f8cSSatish Balay   a->ht_size      = 0;
2084a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2085a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2086a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2087a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2088a30f8f8cSSatish Balay 
2089899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2090a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2091899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2092a30f8f8cSSatish Balay   if (oldmat->colmap) {
2093a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2094a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2095a30f8f8cSSatish Balay #else
20961302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
209752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20981302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2099a30f8f8cSSatish Balay #endif
2100a30f8f8cSSatish Balay   } else a->colmap = 0;
2101387bc808SHong Zhang 
2102a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21031302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
210452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21051302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2106a30f8f8cSSatish Balay   } else a->garray = 0;
2107a30f8f8cSSatish Balay 
2108a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
210952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2110a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
211152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
211282327fa8SHong Zhang 
211382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
211452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
211582327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
211652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2117387bc808SHong Zhang 
2118387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21191ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2120387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2121387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21221ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21231ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2124387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21251ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
212652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
212852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
212952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
213052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2131387bc808SHong Zhang 
2132387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2133387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2134387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
213682327fa8SHong Zhang 
2137a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
213852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2139a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
214052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2141b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2142a30f8f8cSSatish Balay   *newmat = mat;
2143a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2144a30f8f8cSSatish Balay }
2145a30f8f8cSSatish Balay 
2146a30f8f8cSSatish Balay #include "petscsys.h"
2147a30f8f8cSSatish Balay 
21484a2ae208SSatish Balay #undef __FUNCT__
21494a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2150f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2151a30f8f8cSSatish Balay {
2152a30f8f8cSSatish Balay   Mat            A;
21536849ba73SBarry Smith   PetscErrorCode ierr;
215413f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
215587828ca2SBarry Smith   PetscScalar    *vals,*buf;
2156a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2157a30f8f8cSSatish Balay   MPI_Status     status;
21582fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
215913f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21602fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21611302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21621302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21631302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
216413f74950SBarry Smith   int            fd;
2165a30f8f8cSSatish Balay 
2166a30f8f8cSSatish Balay   PetscFunctionBegin;
216777925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21688c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21698c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2170a30f8f8cSSatish Balay 
2171a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2172a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2173a30f8f8cSSatish Balay   if (!rank) {
2174b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2175a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2176552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2177a30f8f8cSSatish Balay     if (header[3] < 0) {
217829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2179a30f8f8cSSatish Balay     }
2180a30f8f8cSSatish Balay   }
2181a30f8f8cSSatish Balay 
2182a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2183a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2184a30f8f8cSSatish Balay 
218529bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2186a30f8f8cSSatish Balay 
2187a30f8f8cSSatish Balay   /*
2188a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2189a30f8f8cSSatish Balay      divisible by the blocksize
2190a30f8f8cSSatish Balay   */
2191a30f8f8cSSatish Balay   Mbs        = M/bs;
2192a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2193a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2194a30f8f8cSSatish Balay   else                  Mbs++;
2195a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2196ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2197a30f8f8cSSatish Balay   }
2198a30f8f8cSSatish Balay 
2199a30f8f8cSSatish Balay   /* determine ownership of all rows */
2200a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2201a30f8f8cSSatish Balay   m          = mbs*bs;
2202a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2203a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2204a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay   rowners[0] = 0;
2206a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2207a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2208a30f8f8cSSatish Balay   rstart = rowners[rank];
2209a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2210a30f8f8cSSatish Balay 
2211a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22122fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2213a30f8f8cSSatish Balay   if (!rank) {
22141302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2216a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2217a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2218a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2219a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay   } else {
2222a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay   }
2224a30f8f8cSSatish Balay 
22250222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2226a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22271302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22281302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2229a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2230a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2231a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2232a30f8f8cSSatish Balay       }
2233a30f8f8cSSatish Balay     }
2234a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2235a30f8f8cSSatish Balay 
2236a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2237a30f8f8cSSatish Balay     maxnz = 0;
2238a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2239a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2240a30f8f8cSSatish Balay     }
22411302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2242a30f8f8cSSatish Balay 
2243a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2244a30f8f8cSSatish Balay     nz     = procsnz[0];
22451302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2246a30f8f8cSSatish Balay     mycols = ibuf;
2247a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2248a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2250a30f8f8cSSatish Balay 
2251a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2252a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2253a30f8f8cSSatish Balay       nz   = procsnz[i];
2254a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2255a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay     }
2257a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2258a30f8f8cSSatish Balay     if (size != 1) {
2259a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2260a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2261a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2262a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2263a30f8f8cSSatish Balay     }
2264a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22650222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2266a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2267a30f8f8cSSatish Balay     nz = 0;
2268a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2269a30f8f8cSSatish Balay       nz += locrowlens[i];
2270a30f8f8cSSatish Balay     }
22711302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay     mycols = ibuf;
2273a30f8f8cSSatish Balay     /* receive message of column indices*/
2274a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2275a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
227629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2277a30f8f8cSSatish Balay   }
2278a30f8f8cSSatish Balay 
2279a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22801302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2281a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22821302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22831302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2284a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2285a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2286a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2287a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2288a30f8f8cSSatish Balay     dcount  = 0;
2289a30f8f8cSSatish Balay     odcount = 0;
2290a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2291a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2292a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22930222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2294a30f8f8cSSatish Balay         if (!mask[tmp]) {
2295a30f8f8cSSatish Balay           mask[tmp] = 1;
22960222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22970222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2298a30f8f8cSSatish Balay         }
2299a30f8f8cSSatish Balay       }
2300a30f8f8cSSatish Balay       rowcount++;
2301a30f8f8cSSatish Balay     }
2302a30f8f8cSSatish Balay 
23030222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23040222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2305a30f8f8cSSatish Balay 
2306a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2307a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2308a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2309a30f8f8cSSatish Balay   }
2310a30f8f8cSSatish Balay 
2311a30f8f8cSSatish Balay   /* create our matrix */
2312f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2313f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
231422191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
231522191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2316273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2317a30f8f8cSSatish Balay 
2318a30f8f8cSSatish Balay   if (!rank) {
231987828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2320a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2321a30f8f8cSSatish Balay     nz = procsnz[0];
2322a30f8f8cSSatish Balay     vals = buf;
2323a30f8f8cSSatish Balay     mycols = ibuf;
2324a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2325a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2326a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2327a30f8f8cSSatish Balay 
2328a30f8f8cSSatish Balay     /* insert into matrix */
2329a30f8f8cSSatish Balay     jj      = rstart*bs;
2330a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23317e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2332a30f8f8cSSatish Balay       mycols += locrowlens[i];
2333a30f8f8cSSatish Balay       vals   += locrowlens[i];
2334a30f8f8cSSatish Balay       jj++;
2335a30f8f8cSSatish Balay     }
23367e06b45fSHong Zhang 
2337a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2338a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2339a30f8f8cSSatish Balay       nz   = procsnz[i];
2340a30f8f8cSSatish Balay       vals = buf;
2341a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2342a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2343a30f8f8cSSatish Balay     }
2344a30f8f8cSSatish Balay     /* the last proc */
2345a30f8f8cSSatish Balay     if (size != 1){
2346a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2347a30f8f8cSSatish Balay       vals = buf;
2348a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2349a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2350a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2351a30f8f8cSSatish Balay     }
2352a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23537e06b45fSHong Zhang 
2354a30f8f8cSSatish Balay   } else {
2355a30f8f8cSSatish Balay     /* receive numeric values */
235687828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2357a30f8f8cSSatish Balay 
2358a30f8f8cSSatish Balay     /* receive message of values*/
2359a30f8f8cSSatish Balay     vals   = buf;
2360a30f8f8cSSatish Balay     mycols = ibuf;
2361a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2362a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
236329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2364a30f8f8cSSatish Balay 
2365a30f8f8cSSatish Balay     /* insert into matrix */
2366a30f8f8cSSatish Balay     jj      = rstart*bs;
2367a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2368a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2369a30f8f8cSSatish Balay       mycols += locrowlens[i];
2370a30f8f8cSSatish Balay       vals   += locrowlens[i];
2371a30f8f8cSSatish Balay       jj++;
2372a30f8f8cSSatish Balay     }
2373a30f8f8cSSatish Balay   }
23747e06b45fSHong Zhang 
2375a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2376a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2377a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2378a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2379a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2380a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2381a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2382a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238322191285SKris Buschelman   *newmat = A;
2384a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2385a30f8f8cSSatish Balay }
2386a30f8f8cSSatish Balay 
23874a2ae208SSatish Balay #undef __FUNCT__
23884a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2389dcf5cc72SBarry Smith /*XXXXX@
2390a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay    Input Parameters:
2393a30f8f8cSSatish Balay .  mat  - the matrix
2394a30f8f8cSSatish Balay .  fact - factor
2395a30f8f8cSSatish Balay 
2396a30f8f8cSSatish Balay    Collective on Mat
2397a30f8f8cSSatish Balay 
2398a30f8f8cSSatish Balay    Level: advanced
2399a30f8f8cSSatish Balay 
2400a30f8f8cSSatish Balay   Notes:
2401a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2402a30f8f8cSSatish Balay 
2403a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2404a30f8f8cSSatish Balay 
2405a30f8f8cSSatish Balay .seealso: MatSetOption()
2406dcf5cc72SBarry Smith @XXXXX*/
2407dcf5cc72SBarry Smith 
240824d5174aSHong Zhang 
24094a2ae208SSatish Balay #undef __FUNCT__
24104a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2411dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
241224d5174aSHong Zhang {
241324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2414f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2415ca54ac64SHong Zhang   PetscReal      atmp;
241687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2417dfbe8321SBarry Smith   PetscErrorCode ierr;
24181302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24191302d50aSBarry Smith   PetscMPIInt    rank,size;
24201302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
242187828ca2SBarry Smith   PetscScalar    *va;
24228a1c53f2SBarry Smith   MatScalar      *ba;
2423f4c0e9e4SHong Zhang   MPI_Status     stat;
242424d5174aSHong Zhang 
242524d5174aSHong Zhang   PetscFunctionBegin;
2426d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24271ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2428f4c0e9e4SHong Zhang 
242956faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
243056faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2431f4c0e9e4SHong Zhang 
2432899cda47SBarry Smith   bs   = A->rmap.bs;
2433f4c0e9e4SHong Zhang   mbs  = a->mbs;
2434f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2435f4c0e9e4SHong Zhang   ba   = b->a;
2436f4c0e9e4SHong Zhang   bi   = b->i;
2437f4c0e9e4SHong Zhang   bj   = b->j;
2438f4c0e9e4SHong Zhang 
2439f4c0e9e4SHong Zhang   /* find ownerships */
2440899cda47SBarry Smith   rowners_bs = A->rmap.range;
2441f4c0e9e4SHong Zhang 
2442f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
244382502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2444ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2445f4c0e9e4SHong Zhang 
2446f4c0e9e4SHong Zhang   /* row_max for B */
2447b8475685SHong Zhang   if (rank != size-1){
2448f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2449f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2450f4c0e9e4SHong Zhang       brow  = bs*i;
2451f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2452f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2453f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2454ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
245504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2456f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2457f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2458ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2459ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2460f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2461f4c0e9e4SHong Zhang           }
2462f4c0e9e4SHong Zhang         }
2463f4c0e9e4SHong Zhang         bj++;
2464f4c0e9e4SHong Zhang       }
2465f4c0e9e4SHong Zhang     }
2466f4c0e9e4SHong Zhang 
2467f4c0e9e4SHong Zhang     /* send values to its owners */
2468f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2469f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2470ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
247156faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2472ca54ac64SHong Zhang     }
2473f4c0e9e4SHong Zhang   }
2474f4c0e9e4SHong Zhang 
2475f4c0e9e4SHong Zhang   /* receive values */
2476ca54ac64SHong Zhang   if (rank){
2477f4c0e9e4SHong Zhang     rvalues = work;
2478ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2479f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
248056faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2481f4c0e9e4SHong Zhang       /* process values */
2482f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2483ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2484f4c0e9e4SHong Zhang       }
2485f4c0e9e4SHong Zhang     }
2486ca54ac64SHong Zhang   }
2487f4c0e9e4SHong Zhang 
24881ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2489ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
249024d5174aSHong Zhang   PetscFunctionReturn(0);
249124d5174aSHong Zhang }
24922798e883SHong Zhang 
24932798e883SHong Zhang #undef __FUNCT__
24942798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
24951302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24962798e883SHong Zhang {
24972798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2498dfbe8321SBarry Smith   PetscErrorCode ierr;
2499899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2500efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2501ffe4fb16SHong Zhang   Vec            bb1;
2502ffe4fb16SHong Zhang 
2503ffe4fb16SHong Zhang   PetscFunctionBegin;
250477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2505ffe4fb16SHong Zhang   if (bs > 1)
2506ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2507ffe4fb16SHong Zhang 
2508ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2509ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2510ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2511ffe4fb16SHong Zhang       its--;
2512ffe4fb16SHong Zhang     }
2513ffe4fb16SHong Zhang 
2514ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2515ffe4fb16SHong Zhang     while (its--){
2516ffe4fb16SHong Zhang 
2517ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2518ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2519ffe4fb16SHong Zhang 
2520ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25211ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25221ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2523ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25241ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2525ffe4fb16SHong Zhang 
2526efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2527ffe4fb16SHong Zhang 
2528ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25291ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25301ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2531ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25321ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2533ffe4fb16SHong Zhang 
2534ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25352dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2536ffe4fb16SHong Zhang 
2537ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25381ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25391ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2540ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2541ffe4fb16SHong Zhang 
2542ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2543ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2544ffe4fb16SHong Zhang 
2545ffe4fb16SHong Zhang       /* local diagonal sweep */
2546ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2547ffe4fb16SHong Zhang     }
2548ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2549ffe4fb16SHong Zhang   } else {
2550ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2551ffe4fb16SHong Zhang   }
2552ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2553ffe4fb16SHong Zhang }
2554ffe4fb16SHong Zhang 
2555ffe4fb16SHong Zhang #undef __FUNCT__
2556ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25571302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2558ffe4fb16SHong Zhang {
2559ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2560dfbe8321SBarry Smith   PetscErrorCode ierr;
25612798e883SHong Zhang   Vec            lvec1,bb1;
25622798e883SHong Zhang 
25632798e883SHong Zhang   PetscFunctionBegin;
256477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2565899cda47SBarry Smith   if (matin->rmap.bs > 1)
25662798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25672798e883SHong Zhang 
2568c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25692798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2570bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25712798e883SHong Zhang       its--;
25722798e883SHong Zhang     }
25732798e883SHong Zhang 
25742798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25752798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25762798e883SHong Zhang     while (its--){
25772798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25782798e883SHong Zhang 
25792798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25802798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2581efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
25822798e883SHong Zhang 
25832798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25842798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25852798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25862798e883SHong Zhang 
25872798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2588efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25892798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25902798e883SHong Zhang 
25912798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25922798e883SHong Zhang 
2593c14dc6b6SHong Zhang       /* diagonal sweep */
2594bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25952798e883SHong Zhang     }
25962798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25972798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2598c14dc6b6SHong Zhang   } else {
2599c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2600c14dc6b6SHong Zhang   }
26012798e883SHong Zhang   PetscFunctionReturn(0);
26022798e883SHong Zhang }
26032798e883SHong Zhang 
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