1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 10177431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1041302d50aSBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 10777431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 1101302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1121302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 1181302d50aSBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1201302d50aSBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 1361302d50aSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 17777431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1801302d50aSBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 18377431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 1861302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1881302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 1941302d50aSBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 1961302d50aSBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 2121302d50aSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 2381302d50aSBarry Smith PetscInt i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261dfbe8321SBarry Smith PetscErrorCode ierr; 2621302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 263a30f8f8cSSatish Balay MatScalar *vsingle; 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay PetscFunctionBegin; 266a30f8f8cSSatish Balay if (N > b->setvalueslen) { 267a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 269a30f8f8cSSatish Balay b->setvalueslen = N; 270a30f8f8cSSatish Balay } 271a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 272a30f8f8cSSatish Balay for (i=0; i<N; i++) { 273a30f8f8cSSatish Balay vsingle[i] = v[i]; 274a30f8f8cSSatish Balay } 275a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 276a30f8f8cSSatish Balay PetscFunctionReturn(0); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay 280a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 281a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 282a30f8f8cSSatish Balay */ 2834a2ae208SSatish Balay #undef __FUNCT__ 284e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2851302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 286a30f8f8cSSatish Balay { 287a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 288a30f8f8cSSatish Balay MatScalar value; 289b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 290dfbe8321SBarry Smith PetscErrorCode ierr; 2911302d50aSBarry Smith PetscInt i,j,row,col; 2921302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2931302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 294521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay /* Some Variables required in the macro */ 297a30f8f8cSSatish Balay Mat A = baij->A; 298a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2991302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 300a30f8f8cSSatish Balay MatScalar *aa=a->a; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay Mat B = baij->B; 303a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 3041302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 305a30f8f8cSSatish Balay MatScalar *ba=b->a; 306a30f8f8cSSatish Balay 3071302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 3081302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 309a30f8f8cSSatish Balay MatScalar *ap,*bap; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay /* for stash */ 3121302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 313f65c83cfSHong Zhang MatScalar *v_loc=0; 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay PetscFunctionBegin; 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay if(!baij->donotstash){ 3181302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 31982502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay 322a30f8f8cSSatish Balay for (i=0; i<m; i++) { 323a30f8f8cSSatish Balay if (im[i] < 0) continue; 324a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 32577431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 326a30f8f8cSSatish Balay #endif 327a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 328a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 329a30f8f8cSSatish Balay for (j=0; j<n; j++) { 330f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 331a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 332a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 333a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 334a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 335a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 336a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 337a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 338a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 339a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 34077431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 341a30f8f8cSSatish Balay #endif 342a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 343a30f8f8cSSatish Balay if (mat->was_assembled) { 344a30f8f8cSSatish Balay if (!baij->colmap) { 345653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 346a30f8f8cSSatish Balay } 347a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 348a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 34971730473SSatish Balay col = col - 1; 350a30f8f8cSSatish Balay #else 35171730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 352a30f8f8cSSatish Balay #endif 353a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 354a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 355a30f8f8cSSatish Balay col = in[j]; 356a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 357a30f8f8cSSatish Balay B = baij->B; 358a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 359a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 360a30f8f8cSSatish Balay ba=b->a; 36171730473SSatish Balay } else col += in[j]%bs; 362a30f8f8cSSatish Balay } else col = in[j]; 363a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 364a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 365a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 366a30f8f8cSSatish Balay } 367a30f8f8cSSatish Balay } 368a30f8f8cSSatish Balay } else { /* off processor entry */ 369a30f8f8cSSatish Balay if (!baij->donotstash) { 370a30f8f8cSSatish Balay n_loc = 0; 371a30f8f8cSSatish Balay for (j=0; j<n; j++){ 372f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 373a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 374a30f8f8cSSatish Balay if (roworiented) { 375a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 376a30f8f8cSSatish Balay } else { 377a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 378a30f8f8cSSatish Balay } 379a30f8f8cSSatish Balay n_loc++; 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay } 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay 386a30f8f8cSSatish Balay if(!baij->donotstash){ 387a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 388a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 389a30f8f8cSSatish Balay } 390a30f8f8cSSatish Balay PetscFunctionReturn(0); 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay 3934a2ae208SSatish Balay #undef __FUNCT__ 394e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 396a30f8f8cSSatish Balay { 3970880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 398f15d580aSBarry Smith const MatScalar *value; 399f15d580aSBarry Smith MatScalar *barray=baij->barray; 4000880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 401dfbe8321SBarry Smith PetscErrorCode ierr; 4021302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 4031302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 404521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 4050880e062SHong Zhang 406a30f8f8cSSatish Balay PetscFunctionBegin; 4070880e062SHong Zhang if(!barray) { 4080880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4090880e062SHong Zhang baij->barray = barray; 4100880e062SHong Zhang } 4110880e062SHong Zhang 4120880e062SHong Zhang if (roworiented) { 4130880e062SHong Zhang stepval = (n-1)*bs; 4140880e062SHong Zhang } else { 4150880e062SHong Zhang stepval = (m-1)*bs; 4160880e062SHong Zhang } 4170880e062SHong Zhang for (i=0; i<m; i++) { 4180880e062SHong Zhang if (im[i] < 0) continue; 4190880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 42077431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 4210880e062SHong Zhang #endif 4220880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4230880e062SHong Zhang row = im[i] - rstart; 4240880e062SHong Zhang for (j=0; j<n; j++) { 4250880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4260880e062SHong Zhang if ((roworiented) && (n == 1)) { 427f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4280880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 429f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4300880e062SHong Zhang } else { /* Here a copy is required */ 4310880e062SHong Zhang if (roworiented) { 4320880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4330880e062SHong Zhang } else { 4340880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4350880e062SHong Zhang } 4360880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4370880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4380880e062SHong Zhang *barray++ = *value++; 4390880e062SHong Zhang } 4400880e062SHong Zhang } 4410880e062SHong Zhang barray -=bs2; 4420880e062SHong Zhang } 4430880e062SHong Zhang 4440880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4450880e062SHong Zhang col = in[j] - cstart; 4460880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4470880e062SHong Zhang } 4480880e062SHong Zhang else if (in[j] < 0) continue; 4490880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 45077431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 4510880e062SHong Zhang #endif 4520880e062SHong Zhang else { 4530880e062SHong Zhang if (mat->was_assembled) { 4540880e062SHong Zhang if (!baij->colmap) { 455653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4560880e062SHong Zhang } 4570880e062SHong Zhang 4580880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4590880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4601302d50aSBarry Smith { PetscInt data; 4610880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4620880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4630880e062SHong Zhang } 4640880e062SHong Zhang #else 4650880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4660880e062SHong Zhang #endif 4670880e062SHong Zhang #endif 4680880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4690880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4700880e062SHong Zhang col = (col - 1)/bs; 4710880e062SHong Zhang #else 4720880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4730880e062SHong Zhang #endif 4740880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4750880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4760880e062SHong Zhang col = in[j]; 4770880e062SHong Zhang } 4780880e062SHong Zhang } 4790880e062SHong Zhang else col = in[j]; 480e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4810880e062SHong Zhang } 4820880e062SHong Zhang } 4830880e062SHong Zhang } else { 4840880e062SHong Zhang if (!baij->donotstash) { 4850880e062SHong Zhang if (roworiented) { 4860880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4870880e062SHong Zhang } else { 4880880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4890880e062SHong Zhang } 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang } 4930880e062SHong Zhang PetscFunctionReturn(0); 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay 4964a2ae208SSatish Balay #undef __FUNCT__ 4974a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4981302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 499a30f8f8cSSatish Balay { 500f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5016849ba73SBarry Smith PetscErrorCode ierr; 502521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 5031302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 504a30f8f8cSSatish Balay 505a30f8f8cSSatish Balay PetscFunctionBegin; 506a30f8f8cSSatish Balay for (i=0; i<m; i++) { 50777431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 50877431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 509a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 510a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 511a30f8f8cSSatish Balay for (j=0; j<n; j++) { 51277431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 51377431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 514a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 515a30f8f8cSSatish Balay col = idxn[j] - bscstart; 516c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 517a30f8f8cSSatish Balay } else { 518a30f8f8cSSatish Balay if (!baij->colmap) { 519653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 520a30f8f8cSSatish Balay } 521a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 522a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 523a30f8f8cSSatish Balay data --; 524a30f8f8cSSatish Balay #else 525a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 526a30f8f8cSSatish Balay #endif 527a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 528a30f8f8cSSatish Balay else { 529a30f8f8cSSatish Balay col = data + idxn[j]%bs; 530e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 531a30f8f8cSSatish Balay } 532a30f8f8cSSatish Balay } 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay } else { 53529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay PetscFunctionReturn(0); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay 5414a2ae208SSatish Balay #undef __FUNCT__ 5424a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 543dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 544a30f8f8cSSatish Balay { 545a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 546dfbe8321SBarry Smith PetscErrorCode ierr; 547a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 548a30f8f8cSSatish Balay 549a30f8f8cSSatish Balay PetscFunctionBegin; 550a30f8f8cSSatish Balay if (baij->size == 1) { 551a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 552a30f8f8cSSatish Balay } else { 553a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 554f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 555a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 556a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 557a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 558a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 559d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 560a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 561a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 562a30f8f8cSSatish Balay } else { 56329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay PetscFunctionReturn(0); 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay 5694a2ae208SSatish Balay #undef __FUNCT__ 5704a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 571dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 572a30f8f8cSSatish Balay { 573a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 574dfbe8321SBarry Smith PetscErrorCode ierr; 5751302d50aSBarry Smith PetscInt nstash,reallocs; 576a30f8f8cSSatish Balay InsertMode addv; 577a30f8f8cSSatish Balay 578a30f8f8cSSatish Balay PetscFunctionBegin; 579a30f8f8cSSatish Balay if (baij->donotstash) { 580a30f8f8cSSatish Balay PetscFunctionReturn(0); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay 583a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 584a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 585a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 58629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 589a30f8f8cSSatish Balay 590a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 591a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 592a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 59377431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs); 594a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 59577431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs); 596a30f8f8cSSatish Balay PetscFunctionReturn(0); 597a30f8f8cSSatish Balay } 598a30f8f8cSSatish Balay 5994a2ae208SSatish Balay #undef __FUNCT__ 6004a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 601dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 602a30f8f8cSSatish Balay { 603a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 604a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 605a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 6066849ba73SBarry Smith PetscErrorCode ierr; 60713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 6081302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 60913f74950SBarry Smith PetscMPIInt n; 610a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 611a30f8f8cSSatish Balay MatScalar *val; 612a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay PetscFunctionBegin; 615a30f8f8cSSatish Balay 616a30f8f8cSSatish Balay if (!baij->donotstash) { 617a30f8f8cSSatish Balay while (1) { 618a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 619a30f8f8cSSatish Balay if (!flg) break; 620a30f8f8cSSatish Balay 621a30f8f8cSSatish Balay for (i=0; i<n;) { 622a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 623a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 624a30f8f8cSSatish Balay if (j < n) ncols = j-i; 625a30f8f8cSSatish Balay else ncols = n-i; 626a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 627a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 628a30f8f8cSSatish Balay i = j; 629a30f8f8cSSatish Balay } 630a30f8f8cSSatish Balay } 631a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 632a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 633a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 634a30f8f8cSSatish Balay restore the original flags */ 635a30f8f8cSSatish Balay r1 = baij->roworiented; 636a30f8f8cSSatish Balay r2 = a->roworiented; 637a30f8f8cSSatish Balay r3 = b->roworiented; 638a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 639a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 640a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 641a30f8f8cSSatish Balay while (1) { 642a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 643a30f8f8cSSatish Balay if (!flg) break; 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay for (i=0; i<n;) { 646a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 647a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 648a30f8f8cSSatish Balay if (j < n) ncols = j-i; 649a30f8f8cSSatish Balay else ncols = n-i; 650a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 651a30f8f8cSSatish Balay i = j; 652a30f8f8cSSatish Balay } 653a30f8f8cSSatish Balay } 654a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 655a30f8f8cSSatish Balay baij->roworiented = r1; 656a30f8f8cSSatish Balay a->roworiented = r2; 657a30f8f8cSSatish Balay b->roworiented = r3; 658a30f8f8cSSatish Balay } 659a30f8f8cSSatish Balay 660a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 661a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 662a30f8f8cSSatish Balay 663a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 664a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 665a30f8f8cSSatish Balay /* 666a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 667a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 668a30f8f8cSSatish Balay */ 669a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 670a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 671a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 672c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 673a30f8f8cSSatish Balay } 674a30f8f8cSSatish Balay } 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 67740781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 678a30f8f8cSSatish Balay } 679a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 680a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 681a30f8f8cSSatish Balay 682a30f8f8cSSatish Balay if (baij->rowvalues) { 683a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 684a30f8f8cSSatish Balay baij->rowvalues = 0; 685a30f8f8cSSatish Balay } 6865222a1afSHong Zhang 687a30f8f8cSSatish Balay PetscFunctionReturn(0); 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay 6904a2ae208SSatish Balay #undef __FUNCT__ 6914a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6926849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 693a30f8f8cSSatish Balay { 694a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 695dfbe8321SBarry Smith PetscErrorCode ierr; 696521d7252SBarry Smith PetscInt bs = mat->bs; 6971302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 69832077d6dSBarry Smith PetscTruth iascii,isdraw; 699b0a32e0cSBarry Smith PetscViewer sviewer; 700f3ef73ceSBarry Smith PetscViewerFormat format; 701a30f8f8cSSatish Balay 702a30f8f8cSSatish Balay PetscFunctionBegin; 70332077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 704fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 70532077d6dSBarry Smith if (iascii) { 706b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 707456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 708a30f8f8cSSatish Balay MatInfo info; 709a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 710a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 71177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 71277431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 713521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 71577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 716a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 71777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 718b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 719a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 720a30f8f8cSSatish Balay PetscFunctionReturn(0); 721fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 72277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 723a30f8f8cSSatish Balay PetscFunctionReturn(0); 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay 727a30f8f8cSSatish Balay if (isdraw) { 728b0a32e0cSBarry Smith PetscDraw draw; 729a30f8f8cSSatish Balay PetscTruth isnull; 730b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 731b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 732a30f8f8cSSatish Balay } 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay if (size == 1) { 735e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 736a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 737a30f8f8cSSatish Balay } else { 738a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 739a30f8f8cSSatish Balay Mat A; 74065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7421302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 743a30f8f8cSSatish Balay MatScalar *a; 744a30f8f8cSSatish Balay 745f204ca49SKris Buschelman /* Should this be the same type as mat? */ 746a30f8f8cSSatish Balay if (!rank) { 747f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 748a30f8f8cSSatish Balay } else { 749f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 750a30f8f8cSSatish Balay } 751f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 752521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 753b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay /* copy over the A part */ 75665d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 757a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7581302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 759a30f8f8cSSatish Balay 760a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 761a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 762a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 763a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 764a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 765a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 766a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 767a30f8f8cSSatish Balay col++; a += bs; 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay /* copy over the B part */ 77265d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77365d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 774a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 775a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 776a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 777a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 778a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 779a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 780a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 781a30f8f8cSSatish Balay col++; a += bs; 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 786a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 787a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 788a30f8f8cSSatish Balay /* 789a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 790b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 791a30f8f8cSSatish Balay */ 792b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79365d70643SHong Zhang if (!rank) { 794e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 795a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 796a30f8f8cSSatish Balay } 797b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 798a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 799a30f8f8cSSatish Balay } 800a30f8f8cSSatish Balay PetscFunctionReturn(0); 801a30f8f8cSSatish Balay } 802a30f8f8cSSatish Balay 8034a2ae208SSatish Balay #undef __FUNCT__ 8044a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 805dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 806a30f8f8cSSatish Balay { 807dfbe8321SBarry Smith PetscErrorCode ierr; 80832077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 809a30f8f8cSSatish Balay 810a30f8f8cSSatish Balay PetscFunctionBegin; 81132077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 812fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 813b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 814fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 81532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 816a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 817a30f8f8cSSatish Balay } else { 8181302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay PetscFunctionReturn(0); 821a30f8f8cSSatish Balay } 822a30f8f8cSSatish Balay 8234a2ae208SSatish Balay #undef __FUNCT__ 8244a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 825dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 826a30f8f8cSSatish Balay { 827a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 828dfbe8321SBarry Smith PetscErrorCode ierr; 829a30f8f8cSSatish Balay 830a30f8f8cSSatish Balay PetscFunctionBegin; 831a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 83277431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 833a30f8f8cSSatish Balay #endif 834a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 835a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 836a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 837a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 838a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 839a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 840a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 841a30f8f8cSSatish Balay #else 842a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 843a30f8f8cSSatish Balay #endif 844a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 845a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 846a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 84740781036SHong Zhang if (baij->slvec0) { 84840781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 84940781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 85040781036SHong Zhang } 85140781036SHong Zhang if (baij->slvec1) { 85240781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 85340781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 85440781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 85540781036SHong Zhang } 85640781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 857a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 858a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 859a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 860a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 861a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 862a30f8f8cSSatish Balay #endif 863a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 864901853e0SKris Buschelman 865901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 866901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 867901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 868901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 869a30f8f8cSSatish Balay PetscFunctionReturn(0); 870a30f8f8cSSatish Balay } 871a30f8f8cSSatish Balay 8724a2ae208SSatish Balay #undef __FUNCT__ 873a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 874dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 875a9d4b620SHong Zhang { 876a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 877dfbe8321SBarry Smith PetscErrorCode ierr; 878521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 879a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 880a9d4b620SHong Zhang 881a9d4b620SHong Zhang PetscFunctionBegin; 882a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 883a9d4b620SHong Zhang if (nt != A->n) { 884a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 885a9d4b620SHong Zhang } 886a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 887a9d4b620SHong Zhang if (nt != A->m) { 888a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 889a9d4b620SHong Zhang } 890a9d4b620SHong Zhang 891a9d4b620SHong Zhang /* diagonal part */ 892a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 893a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 894a9d4b620SHong Zhang 895a9d4b620SHong Zhang /* subdiagonal part */ 896a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 897a9d4b620SHong Zhang 898a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8991ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9001ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 901a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9021ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 903a9d4b620SHong Zhang 904a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9051ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 906a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 907a9d4b620SHong Zhang 908a9d4b620SHong Zhang /* supperdiagonal part */ 909a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 910a9d4b620SHong Zhang 911a9d4b620SHong Zhang PetscFunctionReturn(0); 912a9d4b620SHong Zhang } 913a9d4b620SHong Zhang 914a9d4b620SHong Zhang #undef __FUNCT__ 91540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 916dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 917a30f8f8cSSatish Balay { 918a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 919dfbe8321SBarry Smith PetscErrorCode ierr; 9201302d50aSBarry Smith PetscInt nt; 921a30f8f8cSSatish Balay 922a30f8f8cSSatish Balay PetscFunctionBegin; 923a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 924b5df2d14SHong Zhang if (nt != A->n) { 92529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 926a30f8f8cSSatish Balay } 927a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 928b5df2d14SHong Zhang if (nt != A->m) { 92929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 930a30f8f8cSSatish Balay } 93165d70643SHong Zhang 932b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 933b941877fSHong Zhang /* do diagonal part */ 934b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 935b941877fSHong Zhang /* do supperdiagonal part */ 936b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 937b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 938b941877fSHong Zhang /* do subdiagonal part */ 939b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 940b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 941b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 94265d70643SHong Zhang 943a30f8f8cSSatish Balay PetscFunctionReturn(0); 944a30f8f8cSSatish Balay } 945a30f8f8cSSatish Balay 9464a2ae208SSatish Balay #undef __FUNCT__ 9474a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 948dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 949a30f8f8cSSatish Balay { 950de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 951dfbe8321SBarry Smith PetscErrorCode ierr; 952521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 953a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 954a9d4b620SHong Zhang 955a9d4b620SHong Zhang PetscFunctionBegin; 956a9d4b620SHong Zhang /* 95756faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 95856faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 959a9d4b620SHong Zhang */ 960a9d4b620SHong Zhang /* diagonal part */ 961a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 962a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 963a9d4b620SHong Zhang 964a9d4b620SHong Zhang /* subdiagonal part */ 965a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 966a9d4b620SHong Zhang 967a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9681ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9691ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 970a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9711ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 972a9d4b620SHong Zhang 973a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9741ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 975a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 976a9d4b620SHong Zhang 977a9d4b620SHong Zhang /* supperdiagonal part */ 978a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 979a9d4b620SHong Zhang 980a9d4b620SHong Zhang PetscFunctionReturn(0); 981a9d4b620SHong Zhang } 982a9d4b620SHong Zhang 983a9d4b620SHong Zhang #undef __FUNCT__ 984a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 985dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 986a9d4b620SHong Zhang { 987a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 988dfbe8321SBarry Smith PetscErrorCode ierr; 989a30f8f8cSSatish Balay 990a30f8f8cSSatish Balay PetscFunctionBegin; 991b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 992b941877fSHong Zhang /* do diagonal part */ 993b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 994b941877fSHong Zhang /* do supperdiagonal part */ 995b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 996de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 997de8b6608SHong Zhang 998b941877fSHong Zhang /* do subdiagonal part */ 999a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1000a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1001a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1002aa482183SHong Zhang 1003a30f8f8cSSatish Balay PetscFunctionReturn(0); 1004a30f8f8cSSatish Balay } 1005a30f8f8cSSatish Balay 10064a2ae208SSatish Balay #undef __FUNCT__ 10074a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1008dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1009a30f8f8cSSatish Balay { 1010dfbe8321SBarry Smith PetscErrorCode ierr; 10115a7c0312SHong Zhang 1012a30f8f8cSSatish Balay PetscFunctionBegin; 10135a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10145a7c0312SHong Zhang PetscFunctionReturn(0); 1015a30f8f8cSSatish Balay } 1016a30f8f8cSSatish Balay 10174a2ae208SSatish Balay #undef __FUNCT__ 10184a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1019dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1020a30f8f8cSSatish Balay { 1021dfbe8321SBarry Smith PetscErrorCode ierr; 10225a7c0312SHong Zhang 1023a30f8f8cSSatish Balay PetscFunctionBegin; 10245a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10255a7c0312SHong Zhang PetscFunctionReturn(0); 1026a30f8f8cSSatish Balay } 1027a30f8f8cSSatish Balay 1028a30f8f8cSSatish Balay /* 1029a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1030a30f8f8cSSatish Balay diagonal block 1031a30f8f8cSSatish Balay */ 10324a2ae208SSatish Balay #undef __FUNCT__ 10334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1034dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1035a30f8f8cSSatish Balay { 1036a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1037dfbe8321SBarry Smith PetscErrorCode ierr; 1038a30f8f8cSSatish Balay 1039a30f8f8cSSatish Balay PetscFunctionBegin; 104029bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1041a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1042a30f8f8cSSatish Balay PetscFunctionReturn(0); 1043a30f8f8cSSatish Balay } 1044a30f8f8cSSatish Balay 10454a2ae208SSatish Balay #undef __FUNCT__ 10464a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1047dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1048a30f8f8cSSatish Balay { 1049a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1050dfbe8321SBarry Smith PetscErrorCode ierr; 1051a30f8f8cSSatish Balay 1052a30f8f8cSSatish Balay PetscFunctionBegin; 1053a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1054a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1055a30f8f8cSSatish Balay PetscFunctionReturn(0); 1056a30f8f8cSSatish Balay } 1057a30f8f8cSSatish Balay 10584a2ae208SSatish Balay #undef __FUNCT__ 10594a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10601302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1061a30f8f8cSSatish Balay { 1062a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 106387828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 10646849ba73SBarry Smith PetscErrorCode ierr; 1065521d7252SBarry Smith PetscInt bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 10661302d50aSBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 10671302d50aSBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstart; 1068a30f8f8cSSatish Balay 1069a30f8f8cSSatish Balay PetscFunctionBegin; 107029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1071a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1072a30f8f8cSSatish Balay 1073a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1074a30f8f8cSSatish Balay /* 1075a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1076a30f8f8cSSatish Balay */ 1077a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1078a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 10791302d50aSBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1080a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1081a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1082a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1083a30f8f8cSSatish Balay } 10841302d50aSBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 10851302d50aSBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1086a30f8f8cSSatish Balay } 1087a30f8f8cSSatish Balay 108829bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1089a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1090a30f8f8cSSatish Balay 1091a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1092a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1093a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1094a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1095a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1096a30f8f8cSSatish Balay nztot = nzA + nzB; 1097a30f8f8cSSatish Balay 1098a30f8f8cSSatish Balay cmap = mat->garray; 1099a30f8f8cSSatish Balay if (v || idx) { 1100a30f8f8cSSatish Balay if (nztot) { 1101a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 11021302d50aSBarry Smith PetscInt imark = -1; 1103a30f8f8cSSatish Balay if (v) { 1104a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1105a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1106a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1107a30f8f8cSSatish Balay else break; 1108a30f8f8cSSatish Balay } 1109a30f8f8cSSatish Balay imark = i; 1110a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1111a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1112a30f8f8cSSatish Balay } 1113a30f8f8cSSatish Balay if (idx) { 1114a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1115a30f8f8cSSatish Balay if (imark > -1) { 1116a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1117a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1118a30f8f8cSSatish Balay } 1119a30f8f8cSSatish Balay } else { 1120a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1121a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1122a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1123a30f8f8cSSatish Balay else break; 1124a30f8f8cSSatish Balay } 1125a30f8f8cSSatish Balay imark = i; 1126a30f8f8cSSatish Balay } 1127a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1128a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1129a30f8f8cSSatish Balay } 1130a30f8f8cSSatish Balay } else { 1131a30f8f8cSSatish Balay if (idx) *idx = 0; 1132a30f8f8cSSatish Balay if (v) *v = 0; 1133a30f8f8cSSatish Balay } 1134a30f8f8cSSatish Balay } 1135a30f8f8cSSatish Balay *nz = nztot; 1136a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay PetscFunctionReturn(0); 1139a30f8f8cSSatish Balay } 1140a30f8f8cSSatish Balay 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11431302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1144a30f8f8cSSatish Balay { 1145a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1146a30f8f8cSSatish Balay 1147a30f8f8cSSatish Balay PetscFunctionBegin; 1148a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 114929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1150a30f8f8cSSatish Balay } 1151a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1152a30f8f8cSSatish Balay PetscFunctionReturn(0); 1153a30f8f8cSSatish Balay } 1154a30f8f8cSSatish Balay 11554a2ae208SSatish Balay #undef __FUNCT__ 11564a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1157dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1158a30f8f8cSSatish Balay { 1159a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1160dfbe8321SBarry Smith PetscErrorCode ierr; 1161a30f8f8cSSatish Balay 1162a30f8f8cSSatish Balay PetscFunctionBegin; 1163a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1164a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1165a30f8f8cSSatish Balay PetscFunctionReturn(0); 1166a30f8f8cSSatish Balay } 1167a30f8f8cSSatish Balay 11684a2ae208SSatish Balay #undef __FUNCT__ 11694a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1170dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1171a30f8f8cSSatish Balay { 1172a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1173a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1174dfbe8321SBarry Smith PetscErrorCode ierr; 1175a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1176a30f8f8cSSatish Balay 1177a30f8f8cSSatish Balay PetscFunctionBegin; 1178521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1179a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1180a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1181a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1182a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1183a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1184a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1185a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1186a30f8f8cSSatish Balay info->nz_used = isend[0]; 1187a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1188a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1189a30f8f8cSSatish Balay info->memory = isend[3]; 1190a30f8f8cSSatish Balay info->mallocs = isend[4]; 1191a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1192d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1193a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1194a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1195a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1196a30f8f8cSSatish Balay info->memory = irecv[3]; 1197a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1198a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1199d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1200a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1201a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1202a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1203a30f8f8cSSatish Balay info->memory = irecv[3]; 1204a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1205a30f8f8cSSatish Balay } else { 120677431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1207a30f8f8cSSatish Balay } 1208f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1209f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1210f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1211f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1212a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1213a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1214a30f8f8cSSatish Balay info->factor_mallocs = 0; 1215a30f8f8cSSatish Balay PetscFunctionReturn(0); 1216a30f8f8cSSatish Balay } 1217a30f8f8cSSatish Balay 12184a2ae208SSatish Balay #undef __FUNCT__ 12194a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1220dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1221a30f8f8cSSatish Balay { 1222a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1223dfbe8321SBarry Smith PetscErrorCode ierr; 1224a30f8f8cSSatish Balay 1225a30f8f8cSSatish Balay PetscFunctionBegin; 1226e98b92d7SKris Buschelman switch (op) { 1227e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1228e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1229e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1230e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1231e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1232e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1233e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1234a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1235a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1236e98b92d7SKris Buschelman break; 1237e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1238a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1239a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1240a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1241e98b92d7SKris Buschelman break; 1242e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1243e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1244e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1245b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1246e98b92d7SKris Buschelman break; 1247e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1248a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1249a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1250a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1251e98b92d7SKris Buschelman break; 1252e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1253a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1254e98b92d7SKris Buschelman break; 1255e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 125629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1257e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1258a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1259e98b92d7SKris Buschelman break; 12609a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12619a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12629a4540c5SBarry Smith case MAT_HERMITIAN: 12639a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 126477e54ba9SKris Buschelman case MAT_SYMMETRIC: 126577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12669a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12679a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12689a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 126977e54ba9SKris Buschelman break; 1270e98b92d7SKris Buschelman default: 127129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1272a30f8f8cSSatish Balay } 1273a30f8f8cSSatish Balay PetscFunctionReturn(0); 1274a30f8f8cSSatish Balay } 1275a30f8f8cSSatish Balay 12764a2ae208SSatish Balay #undef __FUNCT__ 12778115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1278dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1279a30f8f8cSSatish Balay { 1280dfbe8321SBarry Smith PetscErrorCode ierr; 1281a30f8f8cSSatish Balay PetscFunctionBegin; 1282999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12838115998fSBarry Smith PetscFunctionReturn(0); 1284a30f8f8cSSatish Balay } 1285a30f8f8cSSatish Balay 12864a2ae208SSatish Balay #undef __FUNCT__ 12874a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1288dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1289a30f8f8cSSatish Balay { 1290a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1291a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1292dfbe8321SBarry Smith PetscErrorCode ierr; 12931302d50aSBarry Smith PetscInt s1,s2,s3; 1294a30f8f8cSSatish Balay 1295a30f8f8cSSatish Balay PetscFunctionBegin; 1296a30f8f8cSSatish Balay if (ll != rr) { 129729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1298a30f8f8cSSatish Balay } 1299a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1300a30f8f8cSSatish Balay if (rr) { 1301a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 130229bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1303a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1304a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay /*} if (ll) { */ 1306a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 130729bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1308a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1309a30f8f8cSSatish Balay /* } */ 1310a30f8f8cSSatish Balay /* scale the diagonal block */ 1311a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1312a30f8f8cSSatish Balay 1313a30f8f8cSSatish Balay /* if (rr) { */ 1314a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1315a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1316a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1317a30f8f8cSSatish Balay } 1318a30f8f8cSSatish Balay 1319a30f8f8cSSatish Balay PetscFunctionReturn(0); 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay 13224a2ae208SSatish Balay #undef __FUNCT__ 13234a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1324dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1325a30f8f8cSSatish Balay { 1326a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1327a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 13281302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1329dfbe8321SBarry Smith PetscErrorCode ierr; 1330a30f8f8cSSatish Balay 1331a30f8f8cSSatish Balay PetscFunctionBegin; 1332a30f8f8cSSatish Balay if (!a->rank) { 1333a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1334a30f8f8cSSatish Balay } 13351302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1336a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1337a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1338a30f8f8cSSatish Balay PetscFunctionReturn(0); 1339a30f8f8cSSatish Balay } 1340a30f8f8cSSatish Balay 13414a2ae208SSatish Balay #undef __FUNCT__ 13424a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1343dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1344a30f8f8cSSatish Balay { 1345f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1346dfbe8321SBarry Smith PetscErrorCode ierr; 1347a30f8f8cSSatish Balay 1348a30f8f8cSSatish Balay PetscFunctionBegin; 1349a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1350a30f8f8cSSatish Balay PetscFunctionReturn(0); 1351a30f8f8cSSatish Balay } 1352a30f8f8cSSatish Balay 13536849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1354a30f8f8cSSatish Balay 13554a2ae208SSatish Balay #undef __FUNCT__ 13564a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1357dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1358a30f8f8cSSatish Balay { 1359a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1360a30f8f8cSSatish Balay Mat a,b,c,d; 1361a30f8f8cSSatish Balay PetscTruth flg; 1362dfbe8321SBarry Smith PetscErrorCode ierr; 1363a30f8f8cSSatish Balay 1364a30f8f8cSSatish Balay PetscFunctionBegin; 1365a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1366a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1367a30f8f8cSSatish Balay 1368a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1369a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1370a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1371a30f8f8cSSatish Balay } 1372a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1373a30f8f8cSSatish Balay PetscFunctionReturn(0); 1374a30f8f8cSSatish Balay } 1375a30f8f8cSSatish Balay 13764a2ae208SSatish Balay #undef __FUNCT__ 13774a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1378dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1379273d9f13SBarry Smith { 1380dfbe8321SBarry Smith PetscErrorCode ierr; 1381273d9f13SBarry Smith 1382273d9f13SBarry Smith PetscFunctionBegin; 1383273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1384273d9f13SBarry Smith PetscFunctionReturn(0); 1385273d9f13SBarry Smith } 1386a5e6ed63SBarry Smith 1387a5e6ed63SBarry Smith #undef __FUNCT__ 1388a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 13891302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1390a5e6ed63SBarry Smith { 13916849ba73SBarry Smith PetscErrorCode ierr; 13921302d50aSBarry Smith PetscInt i; 1393a5e6ed63SBarry Smith PetscTruth flg; 1394a5e6ed63SBarry Smith 13956849ba73SBarry Smith PetscFunctionBegin; 1396a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1397a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1398a5e6ed63SBarry Smith if (!flg) { 13991302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1400a5e6ed63SBarry Smith } 1401a5e6ed63SBarry Smith } 1402a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1403a5e6ed63SBarry Smith PetscFunctionReturn(0); 1404a5e6ed63SBarry Smith } 1405a5e6ed63SBarry Smith 1406a5e6ed63SBarry Smith 1407a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1408a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1409a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1410a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1411a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1412a9d4b620SHong Zhang MatMult_MPISBAIJ, 141397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1414a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1415a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1416a30f8f8cSSatish Balay 0, 1417a30f8f8cSSatish Balay 0, 1418a30f8f8cSSatish Balay 0, 141997304618SKris Buschelman /*10*/ 0, 1420a30f8f8cSSatish Balay 0, 1421a30f8f8cSSatish Balay 0, 14222798e883SHong Zhang MatRelax_MPISBAIJ, 1423a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 142497304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1425a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1426a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1427a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1428a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 142997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1430a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1431a30f8f8cSSatish Balay 0, 1432a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1433a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1434*dcf5cc72SBarry Smith /*25*/ 0, 1435a30f8f8cSSatish Balay 0, 1436a30f8f8cSSatish Balay 0, 1437a30f8f8cSSatish Balay 0, 1438a30f8f8cSSatish Balay 0, 143997304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1440b5df2d14SHong Zhang 0, 1441a30f8f8cSSatish Balay 0, 1442a30f8f8cSSatish Balay 0, 1443a30f8f8cSSatish Balay 0, 144497304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1445a30f8f8cSSatish Balay 0, 1446a30f8f8cSSatish Balay 0, 1447a30f8f8cSSatish Balay 0, 1448a30f8f8cSSatish Balay 0, 144997304618SKris Buschelman /*40*/ 0, 1450a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1451d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1452a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1453a30f8f8cSSatish Balay 0, 145497304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1455a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1456a30f8f8cSSatish Balay 0, 1457a30f8f8cSSatish Balay 0, 1458a30f8f8cSSatish Balay 0, 1459521d7252SBarry Smith /*50*/ 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 146497304618SKris Buschelman /*55*/ 0, 1465a30f8f8cSSatish Balay 0, 1466a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1467a30f8f8cSSatish Balay 0, 1468a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 146997304618SKris Buschelman /*60*/ 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 14728a124369SBarry Smith MatGetPetscMaps_Petsc, 147324d5174aSHong Zhang 0, 147497304618SKris Buschelman /*65*/ 0, 147524d5174aSHong Zhang 0, 147624d5174aSHong Zhang 0, 147724d5174aSHong Zhang 0, 147824d5174aSHong Zhang 0, 147997304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 148024d5174aSHong Zhang 0, 148197304618SKris Buschelman 0, 148297304618SKris Buschelman 0, 148397304618SKris Buschelman 0, 148497304618SKris Buschelman /*75*/ 0, 148597304618SKris Buschelman 0, 148697304618SKris Buschelman 0, 148797304618SKris Buschelman 0, 148897304618SKris Buschelman 0, 148997304618SKris Buschelman /*80*/ 0, 149097304618SKris Buschelman 0, 149197304618SKris Buschelman 0, 149297304618SKris Buschelman 0, 1493865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1494865e5f61SKris Buschelman /*85*/ 0, 1495865e5f61SKris Buschelman 0, 1496865e5f61SKris Buschelman 0, 1497865e5f61SKris Buschelman 0, 1498865e5f61SKris Buschelman 0, 1499865e5f61SKris Buschelman /*90*/ 0, 1500865e5f61SKris Buschelman 0, 1501865e5f61SKris Buschelman 0, 1502865e5f61SKris Buschelman 0, 1503865e5f61SKris Buschelman 0, 1504865e5f61SKris Buschelman /*95*/ 0, 1505865e5f61SKris Buschelman 0, 1506865e5f61SKris Buschelman 0, 1507865e5f61SKris Buschelman 0}; 1508a30f8f8cSSatish Balay 1509a30f8f8cSSatish Balay 1510a30f8f8cSSatish Balay EXTERN_C_BEGIN 15114a2ae208SSatish Balay #undef __FUNCT__ 15124a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1513dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1514a30f8f8cSSatish Balay { 1515a30f8f8cSSatish Balay PetscFunctionBegin; 1516a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1517a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1518a30f8f8cSSatish Balay PetscFunctionReturn(0); 1519a30f8f8cSSatish Balay } 1520a30f8f8cSSatish Balay EXTERN_C_END 1521a30f8f8cSSatish Balay 1522273d9f13SBarry Smith EXTERN_C_BEGIN 15234a2ae208SSatish Balay #undef __FUNCT__ 1524a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 15251302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1526a23d5eceSKris Buschelman { 1527a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1528dfbe8321SBarry Smith PetscErrorCode ierr; 15291302d50aSBarry Smith PetscInt i,mbs,Mbs; 1530a23d5eceSKris Buschelman 1531a23d5eceSKris Buschelman PetscFunctionBegin; 1532a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1533a23d5eceSKris Buschelman 1534a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1535a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1536a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 153777431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 153877431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1539a23d5eceSKris Buschelman if (d_nnz) { 1540a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 154177431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1542a23d5eceSKris Buschelman } 1543a23d5eceSKris Buschelman } 1544a23d5eceSKris Buschelman if (o_nnz) { 1545a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 154677431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1547a23d5eceSKris Buschelman } 1548a23d5eceSKris Buschelman } 1549a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1550a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1551a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1552a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1553a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1554a23d5eceSKris Buschelman 1555a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1556a23d5eceSKris Buschelman mbs = B->m/bs; 1557a23d5eceSKris Buschelman Mbs = B->M/bs; 1558a23d5eceSKris Buschelman if (mbs*bs != B->m) { 155977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1560a23d5eceSKris Buschelman } 1561a23d5eceSKris Buschelman 1562521d7252SBarry Smith B->bs = bs; 1563a23d5eceSKris Buschelman b->bs2 = bs*bs; 1564a23d5eceSKris Buschelman b->mbs = mbs; 1565a23d5eceSKris Buschelman b->nbs = mbs; 1566a23d5eceSKris Buschelman b->Mbs = Mbs; 1567a23d5eceSKris Buschelman b->Nbs = Mbs; 1568a23d5eceSKris Buschelman 1569a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1570a23d5eceSKris Buschelman b->rowners[0] = 0; 1571a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1572a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1573a23d5eceSKris Buschelman } 1574a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1575a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1576a23d5eceSKris Buschelman b->cstart = b->rstart; 1577a23d5eceSKris Buschelman b->cend = b->rend; 1578a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1579a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1580a23d5eceSKris Buschelman } 1581a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1582a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1583a23d5eceSKris Buschelman 1584a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1585a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1586a23d5eceSKris Buschelman 15879c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 15889c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1589c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 15909c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 15919c097c71SKris Buschelman 15929c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 15934aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1594589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 15959c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1596a23d5eceSKris Buschelman 1597a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1598a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1599a23d5eceSKris Buschelman 1600a23d5eceSKris Buschelman PetscFunctionReturn(0); 1601a23d5eceSKris Buschelman } 1602a23d5eceSKris Buschelman EXTERN_C_END 1603a23d5eceSKris Buschelman 16040bad9183SKris Buschelman /*MC 1605fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16060bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16070bad9183SKris Buschelman 16080bad9183SKris Buschelman Options Database Keys: 16090bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16100bad9183SKris Buschelman 16110bad9183SKris Buschelman Level: beginner 16120bad9183SKris Buschelman 16130bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16140bad9183SKris Buschelman M*/ 16150bad9183SKris Buschelman 1616a23d5eceSKris Buschelman EXTERN_C_BEGIN 1617a23d5eceSKris Buschelman #undef __FUNCT__ 16184a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1619dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1620b5df2d14SHong Zhang { 1621b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1622dfbe8321SBarry Smith PetscErrorCode ierr; 1623b5df2d14SHong Zhang PetscTruth flg; 1624b5df2d14SHong Zhang 1625b5df2d14SHong Zhang PetscFunctionBegin; 1626b5df2d14SHong Zhang 1627b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1628b0a32e0cSBarry Smith B->data = (void*)b; 1629b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1630b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1631b5df2d14SHong Zhang 1632b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1633b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1634b5df2d14SHong Zhang B->mapping = 0; 1635b5df2d14SHong Zhang B->factor = 0; 1636b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1637b5df2d14SHong Zhang 1638b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1639b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1640b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1641b5df2d14SHong Zhang 1642b5df2d14SHong Zhang /* build local table of row and column ownerships */ 16431302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1644273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1645273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 16461302d50aSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1647b5df2d14SHong Zhang 1648b5df2d14SHong Zhang /* build cache for off array entries formed */ 1649b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1650b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1651b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1652b5df2d14SHong Zhang b->garray = PETSC_NULL; 1653b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1654b5df2d14SHong Zhang 1655f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1656b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 165764a35ccbSBarry Smith b->setvalueslen = 0; 1658b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1659b5df2d14SHong Zhang #endif 1660b5df2d14SHong Zhang 1661b5df2d14SHong Zhang /* stuff used in block assembly */ 1662b5df2d14SHong Zhang b->barray = 0; 1663b5df2d14SHong Zhang 1664b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1665b5df2d14SHong Zhang b->lvec = 0; 1666b5df2d14SHong Zhang b->Mvctx = 0; 166740781036SHong Zhang b->slvec0 = 0; 166840781036SHong Zhang b->slvec0b = 0; 166940781036SHong Zhang b->slvec1 = 0; 167040781036SHong Zhang b->slvec1a = 0; 167140781036SHong Zhang b->slvec1b = 0; 167240781036SHong Zhang b->sMvctx = 0; 1673b5df2d14SHong Zhang 1674b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1675b5df2d14SHong Zhang b->rowindices = 0; 1676b5df2d14SHong Zhang b->rowvalues = 0; 1677b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1678b5df2d14SHong Zhang 1679b5df2d14SHong Zhang /* hash table stuff */ 1680b5df2d14SHong Zhang b->ht = 0; 1681b5df2d14SHong Zhang b->hd = 0; 1682b5df2d14SHong Zhang b->ht_size = 0; 1683b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1684b5df2d14SHong Zhang b->ht_fact = 0; 1685b5df2d14SHong Zhang b->ht_total_ct = 0; 1686b5df2d14SHong Zhang b->ht_insert_ct = 0; 1687b5df2d14SHong Zhang 1688e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1689b5df2d14SHong Zhang if (flg) { 1690f6275e2eSBarry Smith PetscReal fact = 1.39; 1691b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1692e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1693b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1694b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1695b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1696b5df2d14SHong Zhang } 1697b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1698b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1699b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1700b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1701b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1702b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1703b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1704b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1705b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1706a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1707a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1708a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 170923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 171023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 171123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 171223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1713b5df2d14SHong Zhang PetscFunctionReturn(0); 1714b5df2d14SHong Zhang } 1715273d9f13SBarry Smith EXTERN_C_END 1716b5df2d14SHong Zhang 1717209238afSKris Buschelman /*MC 1718002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1719209238afSKris Buschelman 1720209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1721209238afSKris Buschelman and MATMPISBAIJ otherwise. 1722209238afSKris Buschelman 1723209238afSKris Buschelman Options Database Keys: 1724209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1725209238afSKris Buschelman 1726209238afSKris Buschelman Level: beginner 1727209238afSKris Buschelman 1728209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1729209238afSKris Buschelman M*/ 1730209238afSKris Buschelman 1731209238afSKris Buschelman EXTERN_C_BEGIN 1732209238afSKris Buschelman #undef __FUNCT__ 1733209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1734dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1735dfbe8321SBarry Smith { 17366849ba73SBarry Smith PetscErrorCode ierr; 17371302d50aSBarry Smith PetscMPIInt size; 1738209238afSKris Buschelman 1739209238afSKris Buschelman PetscFunctionBegin; 1740209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1741209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1742209238afSKris Buschelman if (size == 1) { 1743209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1744209238afSKris Buschelman } else { 1745209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1746209238afSKris Buschelman } 1747209238afSKris Buschelman PetscFunctionReturn(0); 1748209238afSKris Buschelman } 1749209238afSKris Buschelman EXTERN_C_END 1750209238afSKris Buschelman 17514a2ae208SSatish Balay #undef __FUNCT__ 17524a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1753b5df2d14SHong Zhang /*@C 1754b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1755b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1756b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1757b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1758b5df2d14SHong Zhang 1759b5df2d14SHong Zhang Collective on Mat 1760b5df2d14SHong Zhang 1761b5df2d14SHong Zhang Input Parameters: 1762b5df2d14SHong Zhang + A - the matrix 1763b5df2d14SHong Zhang . bs - size of blockk 1764b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1765b5df2d14SHong Zhang submatrix (same for all local rows) 1766b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17676d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17686d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17696d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1770b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1771b5df2d14SHong Zhang submatrix (same for all local rows). 1772b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1773b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1774b5df2d14SHong Zhang each block row) or PETSC_NULL. 1775b5df2d14SHong Zhang 1776b5df2d14SHong Zhang 1777b5df2d14SHong Zhang Options Database Keys: 1778b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1779b5df2d14SHong Zhang block calculations (much slower) 1780b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1781b5df2d14SHong Zhang 1782b5df2d14SHong Zhang Notes: 1783b5df2d14SHong Zhang 1784b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1785b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1786b5df2d14SHong Zhang 178749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 178849a6f317SBarry Smith 1789b5df2d14SHong Zhang Storage Information: 1790b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1791b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1792b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1793b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1794b5df2d14SHong Zhang 1795b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1796b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1797b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1798b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1799b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1800b5df2d14SHong Zhang 1801b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1802b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1803b5df2d14SHong Zhang 1804b5df2d14SHong Zhang .vb 1805b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1806b5df2d14SHong Zhang ------------------- 1807b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1808b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1809b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1810b5df2d14SHong Zhang ------------------- 1811b5df2d14SHong Zhang .ve 1812b5df2d14SHong Zhang 1813b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1814b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18156d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18166d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1817b5df2d14SHong Zhang 18186d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18196d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1820b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1821b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1822b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1823b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1824b5df2d14SHong Zhang matrices. 1825b5df2d14SHong Zhang 1826b5df2d14SHong Zhang Level: intermediate 1827b5df2d14SHong Zhang 1828b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1831b5df2d14SHong Zhang @*/ 18321302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1833b5df2d14SHong Zhang { 18341302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1835b5df2d14SHong Zhang 1836b5df2d14SHong Zhang PetscFunctionBegin; 1837a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1838a23d5eceSKris Buschelman if (f) { 1839a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1840b5df2d14SHong Zhang } 1841b5df2d14SHong Zhang PetscFunctionReturn(0); 1842b5df2d14SHong Zhang } 1843b5df2d14SHong Zhang 18444a2ae208SSatish Balay #undef __FUNCT__ 18454a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1846a30f8f8cSSatish Balay /*@C 1847a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1848a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1849a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1850a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1851a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1852a30f8f8cSSatish Balay 1853a30f8f8cSSatish Balay Collective on MPI_Comm 1854a30f8f8cSSatish Balay 1855a30f8f8cSSatish Balay Input Parameters: 1856a30f8f8cSSatish Balay + comm - MPI communicator 1857a30f8f8cSSatish Balay . bs - size of blockk 1858a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1859a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1860a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1861a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1862a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1863a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1864a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1865a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1866a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1867a30f8f8cSSatish Balay submatrix (same for all local rows) 1868a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 18696d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 18706d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 18716d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1872a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1873a30f8f8cSSatish Balay submatrix (same for all local rows). 1874a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1875a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1876a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1877a30f8f8cSSatish Balay 1878a30f8f8cSSatish Balay Output Parameter: 1879a30f8f8cSSatish Balay . A - the matrix 1880a30f8f8cSSatish Balay 1881a30f8f8cSSatish Balay Options Database Keys: 1882a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1883a30f8f8cSSatish Balay block calculations (much slower) 1884a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1885a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1886a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1887a30f8f8cSSatish Balay 1888a30f8f8cSSatish Balay Notes: 1889a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1890a30f8f8cSSatish Balay (possibly both). 1891a30f8f8cSSatish Balay 1892a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1893a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1894a30f8f8cSSatish Balay 189549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 189649a6f317SBarry Smith 1897a30f8f8cSSatish Balay Storage Information: 1898a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1899a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1900a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1901a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1902a30f8f8cSSatish Balay 1903a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1904a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1905a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1906a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1907a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1908a30f8f8cSSatish Balay 1909a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1910a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1911a30f8f8cSSatish Balay 1912a30f8f8cSSatish Balay .vb 1913a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1914a30f8f8cSSatish Balay ------------------- 1915a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1916a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1917a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1918a30f8f8cSSatish Balay ------------------- 1919a30f8f8cSSatish Balay .ve 1920a30f8f8cSSatish Balay 1921a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1922a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19236d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19246d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1925a30f8f8cSSatish Balay 19266d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19276d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1928a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1929a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1930a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1931a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1932a30f8f8cSSatish Balay matrices. 1933a30f8f8cSSatish Balay 1934a30f8f8cSSatish Balay Level: intermediate 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1937a30f8f8cSSatish Balay 1938a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1939a30f8f8cSSatish Balay @*/ 1940a30f8f8cSSatish Balay 19411302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1942a30f8f8cSSatish Balay { 19436849ba73SBarry Smith PetscErrorCode ierr; 19441302d50aSBarry Smith PetscMPIInt size; 1945a30f8f8cSSatish Balay 1946a30f8f8cSSatish Balay PetscFunctionBegin; 1947b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1948273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1949273d9f13SBarry Smith if (size > 1) { 1950b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1951b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1952273d9f13SBarry Smith } else { 1953273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1954273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1955273d9f13SBarry Smith } 1956a30f8f8cSSatish Balay PetscFunctionReturn(0); 1957a30f8f8cSSatish Balay } 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay 19604a2ae208SSatish Balay #undef __FUNCT__ 19614a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 19626849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1963a30f8f8cSSatish Balay { 1964a30f8f8cSSatish Balay Mat mat; 1965a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1966dfbe8321SBarry Smith PetscErrorCode ierr; 1967521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 1968387bc808SHong Zhang PetscScalar *array; 1969a30f8f8cSSatish Balay 1970a30f8f8cSSatish Balay PetscFunctionBegin; 1971a30f8f8cSSatish Balay *newmat = 0; 1972b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1973be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 19741d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1975e1b6402fSHong Zhang 197682327fa8SHong Zhang mat->factor = matin->factor; 1977273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 197882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 19797fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 19807fff6886SHong Zhang 1981b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1982521d7252SBarry Smith mat->bs = matin->bs; 1983a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1984a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1985a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1986a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1987a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1988a30f8f8cSSatish Balay 1989a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1990a30f8f8cSSatish Balay a->rend = oldmat->rend; 1991a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1992a30f8f8cSSatish Balay a->cend = oldmat->cend; 1993a30f8f8cSSatish Balay a->size = oldmat->size; 1994a30f8f8cSSatish Balay a->rank = oldmat->rank; 1995a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1996a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1997a30f8f8cSSatish Balay a->rowindices = 0; 1998a30f8f8cSSatish Balay a->rowvalues = 0; 1999a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2000a30f8f8cSSatish Balay a->barray = 0; 2001a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2002a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2003a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2004a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2005a30f8f8cSSatish Balay 2006a30f8f8cSSatish Balay /* hash table stuff */ 2007a30f8f8cSSatish Balay a->ht = 0; 2008a30f8f8cSSatish Balay a->hd = 0; 2009a30f8f8cSSatish Balay a->ht_size = 0; 2010a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2011a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2012a30f8f8cSSatish Balay a->ht_total_ct = 0; 2013a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2014a30f8f8cSSatish Balay 20151302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2016a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2017521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 2018a30f8f8cSSatish Balay if (oldmat->colmap) { 2019a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2020a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2021a30f8f8cSSatish Balay #else 20221302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 20231302d50aSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt)); 20241302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2025a30f8f8cSSatish Balay #endif 2026a30f8f8cSSatish Balay } else a->colmap = 0; 2027387bc808SHong Zhang 2028a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20291302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 20301302d50aSBarry Smith PetscLogObjectMemory(mat,len*sizeof(PetscInt)); 20311302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2032a30f8f8cSSatish Balay } else a->garray = 0; 2033a30f8f8cSSatish Balay 2034a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2035b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2036a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2037b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 203882327fa8SHong Zhang 203982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2040387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 204182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2042387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2043387bc808SHong Zhang 2044387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 20451ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2046387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2047387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 20481ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 20491ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2050387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 20511ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 2052387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2053387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2054387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2055387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2056387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2057387bc808SHong Zhang 2058387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2059387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2060387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2061387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 206282327fa8SHong Zhang 2063a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2064b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2065a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2066b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2067b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2068a30f8f8cSSatish Balay *newmat = mat; 2069a30f8f8cSSatish Balay PetscFunctionReturn(0); 2070a30f8f8cSSatish Balay } 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay #include "petscsys.h" 2073a30f8f8cSSatish Balay 20744a2ae208SSatish Balay #undef __FUNCT__ 20754a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2076dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2077a30f8f8cSSatish Balay { 2078a30f8f8cSSatish Balay Mat A; 20796849ba73SBarry Smith PetscErrorCode ierr; 208013f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 208187828ca2SBarry Smith PetscScalar *vals,*buf; 2082a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2083a30f8f8cSSatish Balay MPI_Status status; 208413f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners; 208513f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 208613f74950SBarry Smith PetscInt *locrowlens,*procsnz = 0,jj,*mycols,*ibuf; 20871302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 20881302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 20891302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 209013f74950SBarry Smith int fd; 2091a30f8f8cSSatish Balay 2092a30f8f8cSSatish Balay PetscFunctionBegin; 2093b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2094a30f8f8cSSatish Balay 2095a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2096a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2097a30f8f8cSSatish Balay if (!rank) { 2098b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2100552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2101a30f8f8cSSatish Balay if (header[3] < 0) { 210229bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2103a30f8f8cSSatish Balay } 2104a30f8f8cSSatish Balay } 2105a30f8f8cSSatish Balay 2106a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2107a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2108a30f8f8cSSatish Balay 210929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2110a30f8f8cSSatish Balay 2111a30f8f8cSSatish Balay /* 2112a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2113a30f8f8cSSatish Balay divisible by the blocksize 2114a30f8f8cSSatish Balay */ 2115a30f8f8cSSatish Balay Mbs = M/bs; 2116a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2117a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2118a30f8f8cSSatish Balay else Mbs++; 2119a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2120b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2121a30f8f8cSSatish Balay } 2122a30f8f8cSSatish Balay 2123a30f8f8cSSatish Balay /* determine ownership of all rows */ 2124a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2125a30f8f8cSSatish Balay m = mbs*bs; 2126a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2127a30f8f8cSSatish Balay browners = rowners + size + 1; 2128a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2129a30f8f8cSSatish Balay rowners[0] = 0; 2130a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2131a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2132a30f8f8cSSatish Balay rstart = rowners[rank]; 2133a30f8f8cSSatish Balay rend = rowners[rank+1]; 2134a30f8f8cSSatish Balay 2135a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 21361302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2137a30f8f8cSSatish Balay if (!rank) { 21381302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2140a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2141a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2142a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2143a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2144a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2145a30f8f8cSSatish Balay } else { 2146a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2147a30f8f8cSSatish Balay } 2148a30f8f8cSSatish Balay 21490222edb1SHong Zhang if (!rank) { /* procs[0] */ 2150a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 21511302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 21521302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2153a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2154a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2155a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2156a30f8f8cSSatish Balay } 2157a30f8f8cSSatish Balay } 2158a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay 2160a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2161a30f8f8cSSatish Balay maxnz = 0; 2162a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2163a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2164a30f8f8cSSatish Balay } 21651302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay 2167a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2168a30f8f8cSSatish Balay nz = procsnz[0]; 21691302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2170a30f8f8cSSatish Balay mycols = ibuf; 2171a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2172a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2174a30f8f8cSSatish Balay 2175a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2176a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2177a30f8f8cSSatish Balay nz = procsnz[i]; 2178a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2179a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay } 2181a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2182a30f8f8cSSatish Balay if (size != 1) { 2183a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2184a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2186a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay } 2188a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21890222edb1SHong Zhang } else { /* procs[i], i>0 */ 2190a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2191a30f8f8cSSatish Balay nz = 0; 2192a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2193a30f8f8cSSatish Balay nz += locrowlens[i]; 2194a30f8f8cSSatish Balay } 21951302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay mycols = ibuf; 2197a30f8f8cSSatish Balay /* receive message of column indices*/ 2198a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2199a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 220029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2201a30f8f8cSSatish Balay } 2202a30f8f8cSSatish Balay 2203a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22041302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22061302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22071302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2208a30f8f8cSSatish Balay masked1 = mask + Mbs; 2209a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2210a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2211a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2212a30f8f8cSSatish Balay dcount = 0; 2213a30f8f8cSSatish Balay odcount = 0; 2214a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2215a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2216a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22170222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2218a30f8f8cSSatish Balay if (!mask[tmp]) { 2219a30f8f8cSSatish Balay mask[tmp] = 1; 22200222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22210222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2222a30f8f8cSSatish Balay } 2223a30f8f8cSSatish Balay } 2224a30f8f8cSSatish Balay rowcount++; 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay 22270222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22280222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2229a30f8f8cSSatish Balay 2230a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2231a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2232a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2233a30f8f8cSSatish Balay } 2234a30f8f8cSSatish Balay 2235a30f8f8cSSatish Balay /* create our matrix */ 223622191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 223722191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 223822191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2239273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2240a30f8f8cSSatish Balay 2241a30f8f8cSSatish Balay if (!rank) { 224287828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2243a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2244a30f8f8cSSatish Balay nz = procsnz[0]; 2245a30f8f8cSSatish Balay vals = buf; 2246a30f8f8cSSatish Balay mycols = ibuf; 2247a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2248a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2250a30f8f8cSSatish Balay 2251a30f8f8cSSatish Balay /* insert into matrix */ 2252a30f8f8cSSatish Balay jj = rstart*bs; 2253a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22547e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2255a30f8f8cSSatish Balay mycols += locrowlens[i]; 2256a30f8f8cSSatish Balay vals += locrowlens[i]; 2257a30f8f8cSSatish Balay jj++; 2258a30f8f8cSSatish Balay } 22597e06b45fSHong Zhang 2260a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2261a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2262a30f8f8cSSatish Balay nz = procsnz[i]; 2263a30f8f8cSSatish Balay vals = buf; 2264a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay } 2267a30f8f8cSSatish Balay /* the last proc */ 2268a30f8f8cSSatish Balay if (size != 1){ 2269a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2270a30f8f8cSSatish Balay vals = buf; 2271a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2273a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay } 2275a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22767e06b45fSHong Zhang 2277a30f8f8cSSatish Balay } else { 2278a30f8f8cSSatish Balay /* receive numeric values */ 227987828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay 2281a30f8f8cSSatish Balay /* receive message of values*/ 2282a30f8f8cSSatish Balay vals = buf; 2283a30f8f8cSSatish Balay mycols = ibuf; 2284a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2285a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 228629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2287a30f8f8cSSatish Balay 2288a30f8f8cSSatish Balay /* insert into matrix */ 2289a30f8f8cSSatish Balay jj = rstart*bs; 2290a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2291a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2292a30f8f8cSSatish Balay mycols += locrowlens[i]; 2293a30f8f8cSSatish Balay vals += locrowlens[i]; 2294a30f8f8cSSatish Balay jj++; 2295a30f8f8cSSatish Balay } 2296a30f8f8cSSatish Balay } 22977e06b45fSHong Zhang 2298a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2299a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2300a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2301a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2302a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2303a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2304a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2305a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 230622191285SKris Buschelman *newmat = A; 2307a30f8f8cSSatish Balay PetscFunctionReturn(0); 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay 23104a2ae208SSatish Balay #undef __FUNCT__ 23114a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2312*dcf5cc72SBarry Smith /*XXXXX@ 2313a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2314a30f8f8cSSatish Balay 2315a30f8f8cSSatish Balay Input Parameters: 2316a30f8f8cSSatish Balay . mat - the matrix 2317a30f8f8cSSatish Balay . fact - factor 2318a30f8f8cSSatish Balay 2319a30f8f8cSSatish Balay Collective on Mat 2320a30f8f8cSSatish Balay 2321a30f8f8cSSatish Balay Level: advanced 2322a30f8f8cSSatish Balay 2323a30f8f8cSSatish Balay Notes: 2324a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2325a30f8f8cSSatish Balay 2326a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2327a30f8f8cSSatish Balay 2328a30f8f8cSSatish Balay .seealso: MatSetOption() 2329*dcf5cc72SBarry Smith @XXXXX*/ 2330*dcf5cc72SBarry Smith 233124d5174aSHong Zhang 23324a2ae208SSatish Balay #undef __FUNCT__ 23334a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2334dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 233524d5174aSHong Zhang { 233624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2337f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2338ca54ac64SHong Zhang PetscReal atmp; 233987828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2340dfbe8321SBarry Smith PetscErrorCode ierr; 23411302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 23421302d50aSBarry Smith PetscMPIInt rank,size; 23431302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 234487828ca2SBarry Smith PetscScalar *va; 23458a1c53f2SBarry Smith MatScalar *ba; 2346f4c0e9e4SHong Zhang MPI_Status stat; 234724d5174aSHong Zhang 234824d5174aSHong Zhang PetscFunctionBegin; 2349d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 23501ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2351f4c0e9e4SHong Zhang 235256faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 235356faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2354f4c0e9e4SHong Zhang 2355521d7252SBarry Smith bs = A->bs; 2356f4c0e9e4SHong Zhang mbs = a->mbs; 2357f4c0e9e4SHong Zhang Mbs = a->Mbs; 2358f4c0e9e4SHong Zhang ba = b->a; 2359f4c0e9e4SHong Zhang bi = b->i; 2360f4c0e9e4SHong Zhang bj = b->j; 2361f4c0e9e4SHong Zhang 2362f4c0e9e4SHong Zhang /* find ownerships */ 2363f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2364f4c0e9e4SHong Zhang 2365f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 236682502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2367ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2368f4c0e9e4SHong Zhang 2369f4c0e9e4SHong Zhang /* row_max for B */ 2370b8475685SHong Zhang if (rank != size-1){ 2371f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2372f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2373f4c0e9e4SHong Zhang brow = bs*i; 2374f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2375f4c0e9e4SHong Zhang bcol = bs*(*bj); 2376f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2377ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 237804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2379f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2380f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2381ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2382ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2383f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2384f4c0e9e4SHong Zhang } 2385f4c0e9e4SHong Zhang } 2386f4c0e9e4SHong Zhang bj++; 2387f4c0e9e4SHong Zhang } 2388f4c0e9e4SHong Zhang } 2389f4c0e9e4SHong Zhang 2390f4c0e9e4SHong Zhang /* send values to its owners */ 2391f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2392f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2393ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 239456faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2395ca54ac64SHong Zhang } 2396f4c0e9e4SHong Zhang } 2397f4c0e9e4SHong Zhang 2398f4c0e9e4SHong Zhang /* receive values */ 2399ca54ac64SHong Zhang if (rank){ 2400f4c0e9e4SHong Zhang rvalues = work; 2401ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2402f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 240356faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2404f4c0e9e4SHong Zhang /* process values */ 2405f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2406ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2407f4c0e9e4SHong Zhang } 2408f4c0e9e4SHong Zhang } 2409ca54ac64SHong Zhang } 2410f4c0e9e4SHong Zhang 24111ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2412ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 241324d5174aSHong Zhang PetscFunctionReturn(0); 241424d5174aSHong Zhang } 24152798e883SHong Zhang 24162798e883SHong Zhang #undef __FUNCT__ 24172798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24181302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24192798e883SHong Zhang { 24202798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2421dfbe8321SBarry Smith PetscErrorCode ierr; 2422521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2423ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2424ffe4fb16SHong Zhang Vec bb1; 2425ffe4fb16SHong Zhang 2426ffe4fb16SHong Zhang PetscFunctionBegin; 242777431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2428ffe4fb16SHong Zhang if (bs > 1) 2429ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2430ffe4fb16SHong Zhang 2431ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2432ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2433ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2434ffe4fb16SHong Zhang its--; 2435ffe4fb16SHong Zhang } 2436ffe4fb16SHong Zhang 2437ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2438ffe4fb16SHong Zhang while (its--){ 2439ffe4fb16SHong Zhang 2440ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2441ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2442ffe4fb16SHong Zhang 2443ffe4fb16SHong Zhang /* copy xx into slvec0a */ 24441ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 24451ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2446ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24471ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2448ffe4fb16SHong Zhang 2449ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2450ffe4fb16SHong Zhang 2451ffe4fb16SHong Zhang /* copy bb into slvec1a */ 24521ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 24531ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2454ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24551ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2456ffe4fb16SHong Zhang 2457ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2458ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2459ffe4fb16SHong Zhang 2460ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 24611ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 24621ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2463ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2464ffe4fb16SHong Zhang 2465ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2466ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2467ffe4fb16SHong Zhang 2468ffe4fb16SHong Zhang /* local diagonal sweep */ 2469ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2470ffe4fb16SHong Zhang } 2471ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2472ffe4fb16SHong Zhang } else { 2473ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2474ffe4fb16SHong Zhang } 2475ffe4fb16SHong Zhang PetscFunctionReturn(0); 2476ffe4fb16SHong Zhang } 2477ffe4fb16SHong Zhang 2478ffe4fb16SHong Zhang #undef __FUNCT__ 2479ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 24801302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2481ffe4fb16SHong Zhang { 2482ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2483dfbe8321SBarry Smith PetscErrorCode ierr; 2484d05c616dSSatish Balay PetscScalar mone=-1.0; 24852798e883SHong Zhang Vec lvec1,bb1; 24862798e883SHong Zhang 24872798e883SHong Zhang PetscFunctionBegin; 248877431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2489521d7252SBarry Smith if (matin->bs > 1) 24902798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24912798e883SHong Zhang 2492c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24932798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2494bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 24952798e883SHong Zhang its--; 24962798e883SHong Zhang } 24972798e883SHong Zhang 24982798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24992798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25002798e883SHong Zhang while (its--){ 25012798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25022798e883SHong Zhang 25032798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25042798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25052798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25062798e883SHong Zhang 25072798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25082798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25092798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25102798e883SHong Zhang 25112798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25122798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25132798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25142798e883SHong Zhang 25152798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25162798e883SHong Zhang 2517c14dc6b6SHong Zhang /* diagonal sweep */ 2518bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25192798e883SHong Zhang } 25202798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25212798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2522c14dc6b6SHong Zhang } else { 2523c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2524c14dc6b6SHong Zhang } 25252798e883SHong Zhang PetscFunctionReturn(0); 25262798e883SHong Zhang } 25272798e883SHong Zhang 2528