xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision e32f2f54e699d0aa6e733466c00da7e34666fe5e)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6f3da1532SBarry Smith #include "petscblaslapack.h"
7a30f8f8cSSatish Balay 
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay EXTERN_C_BEGIN
254a2ae208SSatish Balay #undef __FUNCT__
264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
28a30f8f8cSSatish Balay {
29f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
30dfbe8321SBarry Smith   PetscErrorCode ierr;
31a30f8f8cSSatish Balay 
32a30f8f8cSSatish Balay   PetscFunctionBegin;
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   PetscFunctionReturn(0);
36a30f8f8cSSatish Balay }
37a30f8f8cSSatish Balay EXTERN_C_END
38a30f8f8cSSatish Balay 
39a30f8f8cSSatish Balay EXTERN_C_BEGIN
404a2ae208SSatish Balay #undef __FUNCT__
414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
43a30f8f8cSSatish Balay {
44f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
45dfbe8321SBarry Smith   PetscErrorCode ierr;
46a30f8f8cSSatish Balay 
47a30f8f8cSSatish Balay   PetscFunctionBegin;
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
50a30f8f8cSSatish Balay   PetscFunctionReturn(0);
51a30f8f8cSSatish Balay }
52a30f8f8cSSatish Balay EXTERN_C_END
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay 
55a30f8f8cSSatish Balay #define CHUNKSIZE  10
56a30f8f8cSSatish Balay 
57a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
58a30f8f8cSSatish Balay { \
59a30f8f8cSSatish Balay  \
60a30f8f8cSSatish Balay     brow = row/bs;  \
61a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
62a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
63a30f8f8cSSatish Balay       bcol = col/bs; \
64a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
65a30f8f8cSSatish Balay       low = 0; high = nrow; \
66a30f8f8cSSatish Balay       while (high-low > 3) { \
67a30f8f8cSSatish Balay         t = (low+high)/2; \
68a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
69a30f8f8cSSatish Balay         else              low  = t; \
70a30f8f8cSSatish Balay       } \
71a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
72a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
73a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
74a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
75a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
76a30f8f8cSSatish Balay           else                    *bap  = value;  \
77a30f8f8cSSatish Balay           goto a_noinsert; \
78a30f8f8cSSatish Balay         } \
79a30f8f8cSSatish Balay       } \
80a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
81*e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
82421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
83a30f8f8cSSatish Balay       N = nrow++ - 1;  \
84a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
85a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
86a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
87a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
88a30f8f8cSSatish Balay       } \
89a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
90a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
91a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
92a30f8f8cSSatish Balay       a_noinsert:; \
93a30f8f8cSSatish Balay     ailen[brow] = nrow; \
94a30f8f8cSSatish Balay }
95e5e170daSBarry Smith 
96a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
97a30f8f8cSSatish Balay { \
98a30f8f8cSSatish Balay     brow = row/bs;  \
99a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
100a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
101a30f8f8cSSatish Balay       bcol = col/bs; \
102a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
103a30f8f8cSSatish Balay       low = 0; high = nrow; \
104a30f8f8cSSatish Balay       while (high-low > 3) { \
105a30f8f8cSSatish Balay         t = (low+high)/2; \
106a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
107a30f8f8cSSatish Balay         else              low  = t; \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
110a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
111a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
112a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
113a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
114a30f8f8cSSatish Balay           else                    *bap  = value;  \
115a30f8f8cSSatish Balay           goto b_noinsert; \
116a30f8f8cSSatish Balay         } \
117a30f8f8cSSatish Balay       } \
118a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
119*e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
120421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
121a30f8f8cSSatish Balay       N = nrow++ - 1;  \
122a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
123a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
124a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
125a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
126a30f8f8cSSatish Balay       } \
127a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
128a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
129a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
130a30f8f8cSSatish Balay       b_noinsert:; \
131a30f8f8cSSatish Balay     bilen[brow] = nrow; \
132a30f8f8cSSatish Balay }
133a30f8f8cSSatish Balay 
134a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
135a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
136a30f8f8cSSatish Balay */
1374a2ae208SSatish Balay #undef __FUNCT__
138dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
139dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
140a30f8f8cSSatish Balay {
141a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
142a30f8f8cSSatish Balay   MatScalar      value;
143b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
144dfbe8321SBarry Smith   PetscErrorCode ierr;
1451302d50aSBarry Smith   PetscInt       i,j,row,col;
146d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
147d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
148d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   /* Some Variables required in the macro */
151a30f8f8cSSatish Balay   Mat            A = baij->A;
152a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1531302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
154a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay   Mat            B = baij->B;
157a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1581302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
159a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
160a30f8f8cSSatish Balay 
1611302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1621302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
163a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   /* for stash */
166910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
167910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
168a30f8f8cSSatish Balay 
169a30f8f8cSSatish Balay   PetscFunctionBegin;
17071fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
171a30f8f8cSSatish Balay   if (!baij->donotstash){
17259ffdab8SBarry Smith     if (n > baij->n_loc) {
17359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17759ffdab8SBarry Smith       baij->n_loc = n;
17859ffdab8SBarry Smith     }
17959ffdab8SBarry Smith     in_loc = baij->in_loc;
18059ffdab8SBarry Smith     v_loc  = baij->v_loc;
181a30f8f8cSSatish Balay   }
182a30f8f8cSSatish Balay 
183a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
184a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1852515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
186*e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
187a30f8f8cSSatish Balay #endif
188a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
189a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
190a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19201b2bd88SHong Zhang           if (a->ignore_ltriangular){
19301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19401b2bd88SHong Zhang           } else {
195*e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19601b2bd88SHong Zhang           }
19701b2bd88SHong Zhang         }
198a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
199a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
200a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
201a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
202a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
203a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
204a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
205a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2062515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
207*e32f2f54SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
208a30f8f8cSSatish Balay #endif
209a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
210a30f8f8cSSatish Balay           if (mat->was_assembled) {
211a30f8f8cSSatish Balay             if (!baij->colmap) {
212653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
213a30f8f8cSSatish Balay             }
214a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
215a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21671730473SSatish Balay             col  = col - 1;
217a30f8f8cSSatish Balay #else
21871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
219a30f8f8cSSatish Balay #endif
220a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
221a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
222a30f8f8cSSatish Balay               col =  in[j];
223a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
224a30f8f8cSSatish Balay               B = baij->B;
225a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
226a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
227a30f8f8cSSatish Balay               ba=b->a;
22871730473SSatish Balay             } else col += in[j]%bs;
229a30f8f8cSSatish Balay           } else col = in[j];
230a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
231a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
232a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
233a30f8f8cSSatish Balay         }
234a30f8f8cSSatish Balay       }
235a30f8f8cSSatish Balay     } else {  /* off processor entry */
236a30f8f8cSSatish Balay       if (!baij->donotstash) {
237a30f8f8cSSatish Balay         n_loc = 0;
238a30f8f8cSSatish Balay         for (j=0; j<n; j++){
239f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
240a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
241a30f8f8cSSatish Balay           if (roworiented) {
242a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
243a30f8f8cSSatish Balay           } else {
244a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
245a30f8f8cSSatish Balay           }
246a30f8f8cSSatish Balay           n_loc++;
247a30f8f8cSSatish Balay         }
248b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
249a30f8f8cSSatish Balay       }
250a30f8f8cSSatish Balay     }
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   PetscFunctionReturn(0);
253a30f8f8cSSatish Balay }
254a30f8f8cSSatish Balay 
2554a2ae208SSatish Balay #undef __FUNCT__
256dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
257dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
258a30f8f8cSSatish Balay {
2590880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
260f15d580aSBarry Smith   const MatScalar *value;
261f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
262f3f98c53SJed Brown   PetscTruth      roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
263dfbe8321SBarry Smith   PetscErrorCode  ierr;
264899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
265899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
266d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2670880e062SHong Zhang 
268a30f8f8cSSatish Balay   PetscFunctionBegin;
2690880e062SHong Zhang   if(!barray) {
2700880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2710880e062SHong Zhang     baij->barray = barray;
2720880e062SHong Zhang   }
2730880e062SHong Zhang 
2740880e062SHong Zhang   if (roworiented) {
2750880e062SHong Zhang     stepval = (n-1)*bs;
2760880e062SHong Zhang   } else {
2770880e062SHong Zhang     stepval = (m-1)*bs;
2780880e062SHong Zhang   }
2790880e062SHong Zhang   for (i=0; i<m; i++) {
2800880e062SHong Zhang     if (im[i] < 0) continue;
2812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
282*e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2830880e062SHong Zhang #endif
2840880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2850880e062SHong Zhang       row = im[i] - rstart;
2860880e062SHong Zhang       for (j=0; j<n; j++) {
287f3f98c53SJed Brown         if (im[i] > in[j]) {
288f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
289*e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
290f3f98c53SJed Brown         }
2910880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2920880e062SHong Zhang         if ((roworiented) && (n == 1)) {
293f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2940880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
295f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2960880e062SHong Zhang         } else { /* Here a copy is required */
2970880e062SHong Zhang           if (roworiented) {
2980880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2990880e062SHong Zhang           } else {
3000880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3010880e062SHong Zhang           }
3020880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3030880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3040880e062SHong Zhang               *barray++  = *value++;
3050880e062SHong Zhang             }
3060880e062SHong Zhang           }
3070880e062SHong Zhang           barray -=bs2;
3080880e062SHong Zhang         }
3090880e062SHong Zhang 
3100880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3110880e062SHong Zhang           col  = in[j] - cstart;
3120880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3130880e062SHong Zhang         }
3140880e062SHong Zhang         else if (in[j] < 0) continue;
3152515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
316*e32f2f54SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3170880e062SHong Zhang #endif
3180880e062SHong Zhang         else {
3190880e062SHong Zhang           if (mat->was_assembled) {
3200880e062SHong Zhang             if (!baij->colmap) {
321653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3220880e062SHong Zhang             }
3230880e062SHong Zhang 
3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3250880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3261302d50aSBarry Smith             { PetscInt data;
3270880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
328*e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3290880e062SHong Zhang             }
3300880e062SHong Zhang #else
331*e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3320880e062SHong Zhang #endif
3330880e062SHong Zhang #endif
3340880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3350880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3360880e062SHong Zhang             col  = (col - 1)/bs;
3370880e062SHong Zhang #else
3380880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3390880e062SHong Zhang #endif
3400880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3410880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3420880e062SHong Zhang               col =  in[j];
3430880e062SHong Zhang             }
3440880e062SHong Zhang           }
3450880e062SHong Zhang           else col = in[j];
346e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3470880e062SHong Zhang         }
3480880e062SHong Zhang       }
3490880e062SHong Zhang     } else {
3500880e062SHong Zhang       if (!baij->donotstash) {
3510880e062SHong Zhang         if (roworiented) {
3520880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         } else {
3540880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3550880e062SHong Zhang         }
3560880e062SHong Zhang       }
3570880e062SHong Zhang     }
3580880e062SHong Zhang   }
3590880e062SHong Zhang   PetscFunctionReturn(0);
360a30f8f8cSSatish Balay }
361a30f8f8cSSatish Balay 
3624a2ae208SSatish Balay #undef __FUNCT__
3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
365a30f8f8cSSatish Balay {
366f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3676849ba73SBarry Smith   PetscErrorCode ierr;
368d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
369d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
370a30f8f8cSSatish Balay 
371a30f8f8cSSatish Balay   PetscFunctionBegin;
372a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
373*e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
374*e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
375a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
376a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
377a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
378*e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
379*e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
380a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
381a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
382c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
383a30f8f8cSSatish Balay         } else {
384a30f8f8cSSatish Balay           if (!baij->colmap) {
385653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
386a30f8f8cSSatish Balay           }
387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
388a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
389a30f8f8cSSatish Balay           data --;
390a30f8f8cSSatish Balay #else
391a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
392a30f8f8cSSatish Balay #endif
393a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
394a30f8f8cSSatish Balay           else {
395a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
396e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
397a30f8f8cSSatish Balay           }
398a30f8f8cSSatish Balay         }
399a30f8f8cSSatish Balay       }
400a30f8f8cSSatish Balay     } else {
401*e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
402a30f8f8cSSatish Balay     }
403a30f8f8cSSatish Balay   }
404a30f8f8cSSatish Balay  PetscFunctionReturn(0);
405a30f8f8cSSatish Balay }
406a30f8f8cSSatish Balay 
4074a2ae208SSatish Balay #undef __FUNCT__
4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
410a30f8f8cSSatish Balay {
411a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
412dfbe8321SBarry Smith   PetscErrorCode ierr;
413a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
414a30f8f8cSSatish Balay 
415a30f8f8cSSatish Balay   PetscFunctionBegin;
416a30f8f8cSSatish Balay   if (baij->size == 1) {
417a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
418a30f8f8cSSatish Balay   } else {
419a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
420f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
423a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4257adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
426a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
427a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4280b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4290b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4300b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4310b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
432899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
433d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4340b8dc8d2SHong Zhang       MatScalar    *v;
4350b8dc8d2SHong Zhang 
43674ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
437d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4380b8dc8d2SHong Zhang       /* Amat */
4390b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4420b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4440b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4450b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4460b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4470b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4490b8dc8d2SHong Zhang               /* non-diagonal block */
4500b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4510b8dc8d2SHong Zhang             }
4520b8dc8d2SHong Zhang           }
4530b8dc8d2SHong Zhang         }
4540b8dc8d2SHong Zhang       }
4550b8dc8d2SHong Zhang       /* Bmat */
4560b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4570b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4580b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4590b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4600b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4610b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4620b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4630b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4640b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4650b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4660b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4670b8dc8d2SHong Zhang             }
4680b8dc8d2SHong Zhang           }
4690b8dc8d2SHong Zhang         }
4700b8dc8d2SHong Zhang       }
471d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4720b8dc8d2SHong Zhang       *norm = 0.0;
473d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4740b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4750b8dc8d2SHong Zhang       }
47674ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
477a30f8f8cSSatish Balay     } else {
478*e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
479a30f8f8cSSatish Balay     }
480a30f8f8cSSatish Balay   }
481a30f8f8cSSatish Balay   PetscFunctionReturn(0);
482a30f8f8cSSatish Balay }
483a30f8f8cSSatish Balay 
4844a2ae208SSatish Balay #undef __FUNCT__
4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
487a30f8f8cSSatish Balay {
488a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
489dfbe8321SBarry Smith   PetscErrorCode ierr;
4901302d50aSBarry Smith   PetscInt       nstash,reallocs;
491a30f8f8cSSatish Balay   InsertMode     addv;
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   PetscFunctionBegin;
494a30f8f8cSSatish Balay   if (baij->donotstash) {
495a30f8f8cSSatish Balay     PetscFunctionReturn(0);
496a30f8f8cSSatish Balay   }
497a30f8f8cSSatish Balay 
498a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4997adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
500a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
501*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
502a30f8f8cSSatish Balay   }
503a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
504a30f8f8cSSatish Balay 
505d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5081e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
509a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5101e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
511a30f8f8cSSatish Balay   PetscFunctionReturn(0);
512a30f8f8cSSatish Balay }
513a30f8f8cSSatish Balay 
5144a2ae208SSatish Balay #undef __FUNCT__
5154a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
516dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
517a30f8f8cSSatish Balay {
518a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
519a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5206849ba73SBarry Smith   PetscErrorCode ierr;
52113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
522e44c0bd4SBarry Smith   PetscInt       *row,*col;
523e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52413f74950SBarry Smith   PetscMPIInt    n;
525a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
526a30f8f8cSSatish Balay   MatScalar      *val;
527a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
528a30f8f8cSSatish Balay 
52991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
530a30f8f8cSSatish Balay   PetscFunctionBegin;
531a30f8f8cSSatish Balay 
532a30f8f8cSSatish Balay   if (!baij->donotstash) {
533a30f8f8cSSatish Balay     while (1) {
534a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
535a30f8f8cSSatish Balay       if (!flg) break;
536a30f8f8cSSatish Balay 
537a30f8f8cSSatish Balay       for (i=0; i<n;) {
538a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
539a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
540a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
541a30f8f8cSSatish Balay         else       ncols = n-i;
542a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
543dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
544a30f8f8cSSatish Balay         i = j;
545a30f8f8cSSatish Balay       }
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
548a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
549a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
550a30f8f8cSSatish Balay        restore the original flags */
551a30f8f8cSSatish Balay     r1 = baij->roworiented;
552a30f8f8cSSatish Balay     r2 = a->roworiented;
55391c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
554a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
555a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
557a30f8f8cSSatish Balay     while (1) {
558a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
559a30f8f8cSSatish Balay       if (!flg) break;
560a30f8f8cSSatish Balay 
561a30f8f8cSSatish Balay       for (i=0; i<n;) {
562a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
563a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
564a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
565a30f8f8cSSatish Balay         else       ncols = n-i;
566dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         i = j;
568a30f8f8cSSatish Balay       }
569a30f8f8cSSatish Balay     }
570a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
571a30f8f8cSSatish Balay     baij->roworiented = r1;
572a30f8f8cSSatish Balay     a->roworiented    = r2;
57391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
574a30f8f8cSSatish Balay   }
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
577a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
578a30f8f8cSSatish Balay 
579a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
580a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
581a30f8f8cSSatish Balay   /*
582a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
583a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
584a30f8f8cSSatish Balay   */
585a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5867adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
587a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
588c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
589a30f8f8cSSatish Balay     }
590a30f8f8cSSatish Balay   }
591a30f8f8cSSatish Balay 
592a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59340781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
594a30f8f8cSSatish Balay   }
59591c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
596a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
597a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
598a30f8f8cSSatish Balay 
59974ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   baij->rowvalues = 0;
6015222a1afSHong Zhang 
602a30f8f8cSSatish Balay   PetscFunctionReturn(0);
603a30f8f8cSSatish Balay }
604a30f8f8cSSatish Balay 
605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6064a2ae208SSatish Balay #undef __FUNCT__
6074a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6086849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
609a30f8f8cSSatish Balay {
610a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
611dfbe8321SBarry Smith   PetscErrorCode    ierr;
612d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6131302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
615b0a32e0cSBarry Smith   PetscViewer       sviewer;
616f3ef73ceSBarry Smith   PetscViewerFormat format;
617a30f8f8cSSatish Balay 
618a30f8f8cSSatish Balay   PetscFunctionBegin;
61932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
620fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
62132077d6dSBarry Smith   if (iascii) {
622b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
623456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
624a30f8f8cSSatish Balay       MatInfo info;
6257adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
628d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
629d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
63177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
63377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
634b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
636a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
637a30f8f8cSSatish Balay       PetscFunctionReturn(0);
638fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
640a30f8f8cSSatish Balay       PetscFunctionReturn(0);
641c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
642c1490034SHong Zhang       PetscFunctionReturn(0);
643a30f8f8cSSatish Balay     }
644a30f8f8cSSatish Balay   }
645a30f8f8cSSatish Balay 
646a30f8f8cSSatish Balay   if (isdraw) {
647b0a32e0cSBarry Smith     PetscDraw  draw;
648a30f8f8cSSatish Balay     PetscTruth isnull;
649b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
650b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
651a30f8f8cSSatish Balay   }
652a30f8f8cSSatish Balay 
653a30f8f8cSSatish Balay   if (size == 1) {
6547adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
655a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
656a30f8f8cSSatish Balay   } else {
657a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
658a30f8f8cSSatish Balay     Mat          A;
65965d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
66065d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
661d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
662a30f8f8cSSatish Balay     MatScalar    *a;
663a30f8f8cSSatish Balay 
664f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6657adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     if (!rank) {
667f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     } else {
669f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
670a30f8f8cSSatish Balay     }
671f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
672d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
67352e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay     /* copy over the A part */
67665d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
677a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6781302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
679a30f8f8cSSatish Balay 
680a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
681e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
682a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
683a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
684e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
685a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
686dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
687a30f8f8cSSatish Balay           col++; a += bs;
688a30f8f8cSSatish Balay         }
689a30f8f8cSSatish Balay       }
690a30f8f8cSSatish Balay     }
691a30f8f8cSSatish Balay     /* copy over the B part */
69265d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69365d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
694a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
695e9f7bc9eSHong Zhang 
696e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
697a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
698a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
699a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
700a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
701799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
702a30f8f8cSSatish Balay           col++; a += bs;
703a30f8f8cSSatish Balay         }
704a30f8f8cSSatish Balay       }
705a30f8f8cSSatish Balay     }
706a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
708a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
709a30f8f8cSSatish Balay     /*
710a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
711b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
712a30f8f8cSSatish Balay     */
713b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71465d70643SHong Zhang     if (!rank) {
7157adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
716a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
717a30f8f8cSSatish Balay     }
718b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
719a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
720a30f8f8cSSatish Balay   }
721a30f8f8cSSatish Balay   PetscFunctionReturn(0);
722a30f8f8cSSatish Balay }
723a30f8f8cSSatish Balay 
7244a2ae208SSatish Balay #undef __FUNCT__
7254a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
726dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
727a30f8f8cSSatish Balay {
728dfbe8321SBarry Smith   PetscErrorCode ierr;
72932077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
730a30f8f8cSSatish Balay 
731a30f8f8cSSatish Balay   PetscFunctionBegin;
73232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
733fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
734b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
735fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73632077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
737a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
738a30f8f8cSSatish Balay   } else {
739*e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
740a30f8f8cSSatish Balay   }
741a30f8f8cSSatish Balay   PetscFunctionReturn(0);
742a30f8f8cSSatish Balay }
743a30f8f8cSSatish Balay 
7444a2ae208SSatish Balay #undef __FUNCT__
7454a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
746dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
747a30f8f8cSSatish Balay {
748a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
749dfbe8321SBarry Smith   PetscErrorCode ierr;
750a30f8f8cSSatish Balay 
751a30f8f8cSSatish Balay   PetscFunctionBegin;
752a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
753d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
754a30f8f8cSSatish Balay #endif
755a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
756a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
758a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7609c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
761a30f8f8cSSatish Balay #else
76205b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
763a30f8f8cSSatish Balay #endif
76405b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
765a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
766a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76740781036SHong Zhang   if (baij->slvec0) {
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
77040781036SHong Zhang   }
77140781036SHong Zhang   if (baij->slvec1) {
77240781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
77340781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77440781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77540781036SHong Zhang   }
77640781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
7775755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77805b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77905b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
780fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
781fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
782fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
78365460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78405b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
785a30f8f8cSSatish Balay #endif
78659ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78759ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
788899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
789a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
790901853e0SKris Buschelman 
791dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
793901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
794901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
795901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
796a30f8f8cSSatish Balay   PetscFunctionReturn(0);
797a30f8f8cSSatish Balay }
798a30f8f8cSSatish Balay 
7994a2ae208SSatish Balay #undef __FUNCT__
800547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
801547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
802547795f9SHong Zhang {
803547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
804547795f9SHong Zhang   PetscErrorCode ierr;
805547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
806547795f9SHong Zhang   PetscScalar    *x,*from;
807547795f9SHong Zhang 
808547795f9SHong Zhang   PetscFunctionBegin;
809547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
810547795f9SHong Zhang   if (nt != A->cmap->n) {
811*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
812547795f9SHong Zhang   }
813547795f9SHong Zhang 
814547795f9SHong Zhang   /* diagonal part */
815547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
816547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
817547795f9SHong Zhang 
818547795f9SHong Zhang   /* subdiagonal part */
819547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
820547795f9SHong Zhang 
821547795f9SHong Zhang   /* copy x into the vec slvec0 */
822547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
824547795f9SHong Zhang 
825547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
827547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
828547795f9SHong Zhang 
829547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
830547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
831547795f9SHong Zhang   /* supperdiagonal part */
832547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
833547795f9SHong Zhang   PetscFunctionReturn(0);
834547795f9SHong Zhang }
835547795f9SHong Zhang 
836547795f9SHong Zhang #undef __FUNCT__
837a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
838dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
839a9d4b620SHong Zhang {
840a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
841dfbe8321SBarry Smith   PetscErrorCode ierr;
842d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
843fa22f6d0SBarry Smith   PetscScalar    *x,*from;
844a9d4b620SHong Zhang 
845a9d4b620SHong Zhang   PetscFunctionBegin;
846a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
847d0f46423SBarry Smith   if (nt != A->cmap->n) {
848*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
849a9d4b620SHong Zhang   }
850a9d4b620SHong Zhang 
851a9d4b620SHong Zhang   /* diagonal part */
852a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
853fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
854a9d4b620SHong Zhang 
855a9d4b620SHong Zhang   /* subdiagonal part */
856a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
857fc165ae2SBarry Smith 
858a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8591ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8601ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
861a9d4b620SHong Zhang 
862fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
863fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8641ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
865fc165ae2SBarry Smith 
866fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
867ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
868a9d4b620SHong Zhang   /* supperdiagonal part */
869a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
870a9d4b620SHong Zhang   PetscFunctionReturn(0);
871a9d4b620SHong Zhang }
872a9d4b620SHong Zhang 
873a9d4b620SHong Zhang #undef __FUNCT__
87440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
875dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
876a30f8f8cSSatish Balay {
877a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
878dfbe8321SBarry Smith   PetscErrorCode ierr;
8791302d50aSBarry Smith   PetscInt       nt;
880a30f8f8cSSatish Balay 
881a30f8f8cSSatish Balay   PetscFunctionBegin;
882a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
883d0f46423SBarry Smith   if (nt != A->cmap->n) {
884*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
885a30f8f8cSSatish Balay   }
886a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
887d0f46423SBarry Smith   if (nt != A->rmap->N) {
888*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
889a30f8f8cSSatish Balay   }
89065d70643SHong Zhang 
891ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
892b941877fSHong Zhang   /* do diagonal part */
893b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
894b941877fSHong Zhang   /* do supperdiagonal part */
895ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
896b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
897b941877fSHong Zhang   /* do subdiagonal part */
898b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
899ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
900ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
90165d70643SHong Zhang 
902a30f8f8cSSatish Balay   PetscFunctionReturn(0);
903a30f8f8cSSatish Balay }
904a30f8f8cSSatish Balay 
9054a2ae208SSatish Balay #undef __FUNCT__
9064a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
907dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
908a30f8f8cSSatish Balay {
909de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
910dfbe8321SBarry Smith   PetscErrorCode ierr;
911d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
912a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
913a9d4b620SHong Zhang 
914a9d4b620SHong Zhang   PetscFunctionBegin;
915a9d4b620SHong Zhang   /*
9167adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9177adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
918a9d4b620SHong Zhang   */
919a9d4b620SHong Zhang   /* diagonal part */
920a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9212dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
922a9d4b620SHong Zhang 
923a9d4b620SHong Zhang   /* subdiagonal part */
924a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
925a9d4b620SHong Zhang 
926a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9271ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9281ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
929a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9301ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
931a9d4b620SHong Zhang 
932ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9331ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
934ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
935a9d4b620SHong Zhang 
936a9d4b620SHong Zhang   /* supperdiagonal part */
937a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
938a9d4b620SHong Zhang 
939a9d4b620SHong Zhang   PetscFunctionReturn(0);
940a9d4b620SHong Zhang }
941a9d4b620SHong Zhang 
942a9d4b620SHong Zhang #undef __FUNCT__
943a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
944dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
945a9d4b620SHong Zhang {
946a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
947dfbe8321SBarry Smith   PetscErrorCode ierr;
948a30f8f8cSSatish Balay 
949a30f8f8cSSatish Balay   PetscFunctionBegin;
950ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
951b941877fSHong Zhang   /* do diagonal part */
952b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
953b941877fSHong Zhang   /* do supperdiagonal part */
954ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
955de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
956de8b6608SHong Zhang 
957b941877fSHong Zhang   /* do subdiagonal part */
958a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
959ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
960ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
961aa482183SHong Zhang 
962a30f8f8cSSatish Balay   PetscFunctionReturn(0);
963a30f8f8cSSatish Balay }
964a30f8f8cSSatish Balay 
965a30f8f8cSSatish Balay /*
966a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
967a30f8f8cSSatish Balay    diagonal block
968a30f8f8cSSatish Balay */
9694a2ae208SSatish Balay #undef __FUNCT__
9704a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
971dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
972a30f8f8cSSatish Balay {
973a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
974dfbe8321SBarry Smith   PetscErrorCode ierr;
975a30f8f8cSSatish Balay 
976a30f8f8cSSatish Balay   PetscFunctionBegin;
977*e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
978a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
979a30f8f8cSSatish Balay   PetscFunctionReturn(0);
980a30f8f8cSSatish Balay }
981a30f8f8cSSatish Balay 
9824a2ae208SSatish Balay #undef __FUNCT__
9834a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
984f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
985a30f8f8cSSatish Balay {
986a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
987dfbe8321SBarry Smith   PetscErrorCode ierr;
988a30f8f8cSSatish Balay 
989a30f8f8cSSatish Balay   PetscFunctionBegin;
990f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
991f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
992a30f8f8cSSatish Balay   PetscFunctionReturn(0);
993a30f8f8cSSatish Balay }
994a30f8f8cSSatish Balay 
9954a2ae208SSatish Balay #undef __FUNCT__
9964a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9971302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
998a30f8f8cSSatish Balay {
999d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1000d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1001d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1002d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1003d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1004899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1005d0d4cfc2SHong Zhang 
1006a30f8f8cSSatish Balay   PetscFunctionBegin;
1007*e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1008d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1009d0d4cfc2SHong Zhang 
1010d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1011d0d4cfc2SHong Zhang     /*
1012d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1013d0d4cfc2SHong Zhang     */
1014d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1015d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1016d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1017d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1018d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1019d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1020d0d4cfc2SHong Zhang     }
102174ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1022d0d4cfc2SHong Zhang   }
1023d0d4cfc2SHong Zhang 
1024*e32f2f54SBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows")
1025d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1026d0d4cfc2SHong Zhang 
1027d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1028d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1029d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1030d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1031d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1032d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1033d0d4cfc2SHong Zhang 
1034d0d4cfc2SHong Zhang   cmap  = mat->garray;
1035d0d4cfc2SHong Zhang   if (v  || idx) {
1036d0d4cfc2SHong Zhang     if (nztot) {
1037d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1038d0d4cfc2SHong Zhang       PetscInt imark = -1;
1039d0d4cfc2SHong Zhang       if (v) {
1040d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1041d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1042d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1043d0d4cfc2SHong Zhang           else break;
1044d0d4cfc2SHong Zhang         }
1045d0d4cfc2SHong Zhang         imark = i;
1046d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1047d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1048d0d4cfc2SHong Zhang       }
1049d0d4cfc2SHong Zhang       if (idx) {
1050d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1051d0d4cfc2SHong Zhang         if (imark > -1) {
1052d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1053d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1054d0d4cfc2SHong Zhang           }
1055d0d4cfc2SHong Zhang         } else {
1056d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1057d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1058d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1059d0d4cfc2SHong Zhang             else break;
1060d0d4cfc2SHong Zhang           }
1061d0d4cfc2SHong Zhang           imark = i;
1062d0d4cfc2SHong Zhang         }
1063d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1064d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1065d0d4cfc2SHong Zhang       }
1066d0d4cfc2SHong Zhang     } else {
1067d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1068d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1069d0d4cfc2SHong Zhang     }
1070d0d4cfc2SHong Zhang   }
1071d0d4cfc2SHong Zhang   *nz = nztot;
1072d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1073d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1074a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1075a30f8f8cSSatish Balay }
1076a30f8f8cSSatish Balay 
10774a2ae208SSatish Balay #undef __FUNCT__
10784a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10791302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1080a30f8f8cSSatish Balay {
1081a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1082a30f8f8cSSatish Balay 
1083a30f8f8cSSatish Balay   PetscFunctionBegin;
1084abc0a331SBarry Smith   if (!baij->getrowactive) {
1085*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1086a30f8f8cSSatish Balay   }
1087a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1088a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1089a30f8f8cSSatish Balay }
1090a30f8f8cSSatish Balay 
10914a2ae208SSatish Balay #undef __FUNCT__
1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1093d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1094d0d4cfc2SHong Zhang {
1095d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1096d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1097d0d4cfc2SHong Zhang 
1098d0d4cfc2SHong Zhang   PetscFunctionBegin;
1099d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1100d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1101d0d4cfc2SHong Zhang }
1102d0d4cfc2SHong Zhang #undef __FUNCT__
1103d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1104d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1105d0d4cfc2SHong Zhang {
1106d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1107d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1108d0d4cfc2SHong Zhang 
1109d0d4cfc2SHong Zhang   PetscFunctionBegin;
1110d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1111d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1112d0d4cfc2SHong Zhang }
1113d0d4cfc2SHong Zhang 
1114d0d4cfc2SHong Zhang #undef __FUNCT__
111599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
111699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111799cafbc1SBarry Smith {
111899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111999cafbc1SBarry Smith   PetscErrorCode ierr;
112099cafbc1SBarry Smith 
112199cafbc1SBarry Smith   PetscFunctionBegin;
112299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
112399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
112499cafbc1SBarry Smith   PetscFunctionReturn(0);
112599cafbc1SBarry Smith }
112699cafbc1SBarry Smith 
112799cafbc1SBarry Smith #undef __FUNCT__
112899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
113099cafbc1SBarry Smith {
113199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
113299cafbc1SBarry Smith   PetscErrorCode ierr;
113399cafbc1SBarry Smith 
113499cafbc1SBarry Smith   PetscFunctionBegin;
113599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
113699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113799cafbc1SBarry Smith   PetscFunctionReturn(0);
113899cafbc1SBarry Smith }
113999cafbc1SBarry Smith 
114099cafbc1SBarry Smith #undef __FUNCT__
11414a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1142dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1143a30f8f8cSSatish Balay {
1144a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1145dfbe8321SBarry Smith   PetscErrorCode ierr;
1146a30f8f8cSSatish Balay 
1147a30f8f8cSSatish Balay   PetscFunctionBegin;
1148a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1149a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1150a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1151a30f8f8cSSatish Balay }
1152a30f8f8cSSatish Balay 
11534a2ae208SSatish Balay #undef __FUNCT__
11544a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1155dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1156a30f8f8cSSatish Balay {
1157a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1158a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1159dfbe8321SBarry Smith   PetscErrorCode ierr;
1160a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1161a30f8f8cSSatish Balay 
1162a30f8f8cSSatish Balay   PetscFunctionBegin;
1163d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1164a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1165a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1166a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1167a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1168a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1169a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1170a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1171a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1172a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1173a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1174a30f8f8cSSatish Balay     info->memory       = isend[3];
1175a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1176a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11777adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1178a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1179a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1180a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1181a30f8f8cSSatish Balay     info->memory       = irecv[3];
1182a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1183a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11847adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1185a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1186a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1187a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1188a30f8f8cSSatish Balay     info->memory       = irecv[3];
1189a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1190a30f8f8cSSatish Balay   } else {
1191*e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1192a30f8f8cSSatish Balay   }
1193a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1194a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1195a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1196a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1197a30f8f8cSSatish Balay }
1198a30f8f8cSSatish Balay 
11994a2ae208SSatish Balay #undef __FUNCT__
12004a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
12014e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1202a30f8f8cSSatish Balay {
1203a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1204d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1205dfbe8321SBarry Smith   PetscErrorCode ierr;
1206a30f8f8cSSatish Balay 
1207a30f8f8cSSatish Balay   PetscFunctionBegin;
1208e98b92d7SKris Buschelman   switch (op) {
1209512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1210e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
121128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1212a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1213e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12144e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12154e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1216e98b92d7SKris Buschelman     break;
1217e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12184e0d8c25SBarry Smith     a->roworiented = flg;
12194e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12204e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1221e98b92d7SKris Buschelman     break;
12224e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1223290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1224e98b92d7SKris Buschelman     break;
1225e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12264e0d8c25SBarry Smith     a->donotstash = flg;
1227e98b92d7SKris Buschelman     break;
1228e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12294e0d8c25SBarry Smith     a->ht_flag = flg;
1230e98b92d7SKris Buschelman     break;
12319a4540c5SBarry Smith   case MAT_HERMITIAN:
1232*e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1233eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1234547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1235eeffb40dSHong Zhang     break;
123677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1237eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1238eeffb40dSHong Zhang     break;
123977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1240eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1241eeffb40dSHong Zhang     break;
12429a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1243*e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1244290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124577e54ba9SKris Buschelman     break;
1246d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12474e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1248d0d4cfc2SHong Zhang     break;
1249d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12504e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1251d0d4cfc2SHong Zhang     break;
1252d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12534e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1254d0d4cfc2SHong Zhang     break;
1255e98b92d7SKris Buschelman   default:
1256*e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1257a30f8f8cSSatish Balay   }
1258a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1259a30f8f8cSSatish Balay }
1260a30f8f8cSSatish Balay 
12614a2ae208SSatish Balay #undef __FUNCT__
12628115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1263fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1264a30f8f8cSSatish Balay {
1265dfbe8321SBarry Smith   PetscErrorCode ierr;
1266a30f8f8cSSatish Balay   PetscFunctionBegin;
1267815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1268999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1269fc4dec0aSBarry Smith   }
12708115998fSBarry Smith   PetscFunctionReturn(0);
1271a30f8f8cSSatish Balay }
1272a30f8f8cSSatish Balay 
12734a2ae208SSatish Balay #undef __FUNCT__
12744a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1275dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1276a30f8f8cSSatish Balay {
1277a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1278a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1279dfbe8321SBarry Smith   PetscErrorCode ierr;
12805e90f9d9SHong Zhang   PetscInt       nv,m,n;
1281b3bf805bSHong Zhang   PetscTruth     flg;
1282a30f8f8cSSatish Balay 
1283a30f8f8cSSatish Balay   PetscFunctionBegin;
1284a30f8f8cSSatish Balay   if (ll != rr){
1285b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1286b3bf805bSHong Zhang     if (!flg)
1287*e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1288a30f8f8cSSatish Balay   }
1289b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1290b3bf805bSHong Zhang 
12915e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1292*e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1293b3bf805bSHong Zhang 
12945e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1295*e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12965e90f9d9SHong Zhang 
1297ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12985e90f9d9SHong Zhang 
12995e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1300a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13015e90f9d9SHong Zhang 
13025e90f9d9SHong Zhang   /* scale the diagonal part */
1303a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1304a30f8f8cSSatish Balay 
13055e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1306ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1307a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1308a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1309a30f8f8cSSatish Balay }
1310a30f8f8cSSatish Balay 
13114a2ae208SSatish Balay #undef __FUNCT__
13124a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1313dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1314a30f8f8cSSatish Balay {
1315f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1316dfbe8321SBarry Smith   PetscErrorCode ierr;
1317a30f8f8cSSatish Balay 
1318a30f8f8cSSatish Balay   PetscFunctionBegin;
1319a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1320a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1321a30f8f8cSSatish Balay }
1322a30f8f8cSSatish Balay 
13236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1324a30f8f8cSSatish Balay 
13254a2ae208SSatish Balay #undef __FUNCT__
13264a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1327dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1328a30f8f8cSSatish Balay {
1329a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1330a30f8f8cSSatish Balay   Mat            a,b,c,d;
1331a30f8f8cSSatish Balay   PetscTruth     flg;
1332dfbe8321SBarry Smith   PetscErrorCode ierr;
1333a30f8f8cSSatish Balay 
1334a30f8f8cSSatish Balay   PetscFunctionBegin;
1335a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1336a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1337a30f8f8cSSatish Balay 
1338a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1339abc0a331SBarry Smith   if (flg) {
1340a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1341a30f8f8cSSatish Balay   }
13427adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1343a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1344a30f8f8cSSatish Balay }
1345a30f8f8cSSatish Balay 
13464a2ae208SSatish Balay #undef __FUNCT__
13473c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13483c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13493c896bc6SHong Zhang {
13503c896bc6SHong Zhang   PetscErrorCode ierr;
13513c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13523c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13533c896bc6SHong Zhang 
13543c896bc6SHong Zhang   PetscFunctionBegin;
13553c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13563c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1357d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13583c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1359d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13603c896bc6SHong Zhang   } else {
13613c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13623c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13633c896bc6SHong Zhang   }
13643c896bc6SHong Zhang   PetscFunctionReturn(0);
13653c896bc6SHong Zhang }
13663c896bc6SHong Zhang 
13673c896bc6SHong Zhang #undef __FUNCT__
13684a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1369dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1370273d9f13SBarry Smith {
1371dfbe8321SBarry Smith   PetscErrorCode ierr;
1372273d9f13SBarry Smith 
1373273d9f13SBarry Smith   PetscFunctionBegin;
1374db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1375273d9f13SBarry Smith   PetscFunctionReturn(0);
1376273d9f13SBarry Smith }
1377a5e6ed63SBarry Smith 
13784fe895cdSHong Zhang #undef __FUNCT__
13794fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13804fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13814fe895cdSHong Zhang {
13824fe895cdSHong Zhang   PetscErrorCode ierr;
13834fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13844fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13854fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13864fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13874fe895cdSHong Zhang 
13884fe895cdSHong Zhang   PetscFunctionBegin;
13894fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13904fe895cdSHong Zhang     PetscScalar alpha = a;
13914fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13924fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13930805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13944fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13954fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13964fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13970805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13984fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13994fe895cdSHong Zhang   } else {
1400d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14014fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1402d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14034fe895cdSHong Zhang   }
14044fe895cdSHong Zhang   PetscFunctionReturn(0);
14054fe895cdSHong Zhang }
14064fe895cdSHong Zhang 
1407a5e6ed63SBarry Smith #undef __FUNCT__
14086363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14096363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14106363de48SJed Brown {
14116363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14126363de48SJed Brown   PetscInt        rbs,cbs;
14136363de48SJed Brown   PetscErrorCode  ierr;
14146363de48SJed Brown 
14156363de48SJed Brown   PetscFunctionBegin;
14166363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14176363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14186363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14196363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1420*e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1421*e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14226363de48SJed Brown   PetscFunctionReturn(0);
14236363de48SJed Brown }
14246363de48SJed Brown 
14256363de48SJed Brown #undef __FUNCT__
1426a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14271302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1428a5e6ed63SBarry Smith {
14296849ba73SBarry Smith   PetscErrorCode ierr;
14301302d50aSBarry Smith   PetscInt       i;
1431a5e6ed63SBarry Smith   PetscTruth     flg;
1432a5e6ed63SBarry Smith 
14336849ba73SBarry Smith   PetscFunctionBegin;
1434a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1435a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1436a5e6ed63SBarry Smith     if (!flg) {
1437*e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1438a5e6ed63SBarry Smith     }
1439a5e6ed63SBarry Smith   }
1440a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1441a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1442a5e6ed63SBarry Smith }
1443a5e6ed63SBarry Smith 
1444a5e6ed63SBarry Smith 
1445a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1446a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1447a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1448a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1449a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1450a9d4b620SHong Zhang        MatMult_MPISBAIJ,
145197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1452431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1453431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
1456a30f8f8cSSatish Balay        0,
145797304618SKris Buschelman /*10*/ 0,
1458a30f8f8cSSatish Balay        0,
1459a30f8f8cSSatish Balay        0,
146041f059aeSBarry Smith        MatSOR_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
146297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1463a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1468a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1469a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1470a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1471d519adbfSMatthew Knepley /*24*/ 0,
1472a30f8f8cSSatish Balay        0,
1473a30f8f8cSSatish Balay        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1477b5df2d14SHong Zhang        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        0,
1484a30f8f8cSSatish Balay        0,
1485a30f8f8cSSatish Balay        0,
1486d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1487a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1488d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1489a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14903c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1491d519adbfSMatthew Knepley /*44*/ 0,
1492a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
14966363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        0,
1500a30f8f8cSSatish Balay        0,
1501d519adbfSMatthew Knepley /*54*/ 0,
1502a30f8f8cSSatish Balay        0,
1503a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1506d519adbfSMatthew Knepley /*59*/ 0,
1507a30f8f8cSSatish Balay        0,
1508a30f8f8cSSatish Balay        0,
1509357abbc8SBarry Smith        0,
151024d5174aSHong Zhang        0,
1511d519adbfSMatthew Knepley /*64*/ 0,
151224d5174aSHong Zhang        0,
151324d5174aSHong Zhang        0,
151424d5174aSHong Zhang        0,
151524d5174aSHong Zhang        0,
1516d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151724d5174aSHong Zhang        0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
1521d519adbfSMatthew Knepley /*74*/ 0,
152297304618SKris Buschelman        0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
1526d519adbfSMatthew Knepley /*79*/ 0,
152797304618SKris Buschelman        0,
152897304618SKris Buschelman        0,
152997304618SKris Buschelman        0,
1530865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1531d519adbfSMatthew Knepley /*84*/ 0,
1532865e5f61SKris Buschelman        0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536d519adbfSMatthew Knepley /*89*/ 0,
1537865e5f61SKris Buschelman        0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
1540865e5f61SKris Buschelman        0,
1541d519adbfSMatthew Knepley /*94*/ 0,
1542865e5f61SKris Buschelman        0,
1543865e5f61SKris Buschelman        0,
154499cafbc1SBarry Smith        0,
154599cafbc1SBarry Smith        0,
1546d519adbfSMatthew Knepley /*99*/ 0,
154799cafbc1SBarry Smith        0,
154899cafbc1SBarry Smith        0,
154999cafbc1SBarry Smith        0,
155099cafbc1SBarry Smith        0,
1551d519adbfSMatthew Knepley /*104*/0,
155299cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1553d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1554d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1555d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
155699cafbc1SBarry Smith };
1557a30f8f8cSSatish Balay 
1558a30f8f8cSSatish Balay 
1559a30f8f8cSSatish Balay EXTERN_C_BEGIN
15604a2ae208SSatish Balay #undef __FUNCT__
15614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1562be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1563a30f8f8cSSatish Balay {
1564a30f8f8cSSatish Balay   PetscFunctionBegin;
1565a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1566a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1567a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1568a30f8f8cSSatish Balay }
1569a30f8f8cSSatish Balay EXTERN_C_END
1570a30f8f8cSSatish Balay 
1571273d9f13SBarry Smith EXTERN_C_BEGIN
15724a2ae208SSatish Balay #undef __FUNCT__
1573a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1574be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1575a23d5eceSKris Buschelman {
1576a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1577dfbe8321SBarry Smith   PetscErrorCode ierr;
1578db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1579a23d5eceSKris Buschelman 
1580a23d5eceSKris Buschelman   PetscFunctionBegin;
1581db4efbfdSBarry Smith   if (bs < 0){
15827adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1583db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15848c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1585db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1586db4efbfdSBarry Smith   }
1587db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1588*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1589db4efbfdSBarry Smith   }
1590db4efbfdSBarry Smith   bs = newbs;
1591a23d5eceSKris Buschelman 
1592a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1593a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1594*e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1595*e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1596899cda47SBarry Smith 
1597d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
159826283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159926283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1600899cda47SBarry Smith 
1601a23d5eceSKris Buschelman   if (d_nnz) {
1602d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1603*e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1604a23d5eceSKris Buschelman     }
1605a23d5eceSKris Buschelman   }
1606a23d5eceSKris Buschelman   if (o_nnz) {
1607d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1608*e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1609a23d5eceSKris Buschelman     }
1610a23d5eceSKris Buschelman   }
1611a23d5eceSKris Buschelman 
1612a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1613d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1614d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1615d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1616*e32f2f54SBarry Smith     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1617a23d5eceSKris Buschelman   }
1618a23d5eceSKris Buschelman 
1619d0f46423SBarry Smith   B->rmap->bs  = bs;
1620a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1621a23d5eceSKris Buschelman   b->mbs = mbs;
1622a23d5eceSKris Buschelman   b->nbs = mbs;
1623a23d5eceSKris Buschelman   b->Mbs = Mbs;
1624a23d5eceSKris Buschelman   b->Nbs = Mbs;
1625a23d5eceSKris Buschelman 
1626a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1627d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1628a23d5eceSKris Buschelman   }
1629d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1630d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1631a23d5eceSKris Buschelman 
1632d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1633d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1634a23d5eceSKris Buschelman 
1635526dfc15SBarry Smith   if (!B->preallocated) {
1636f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1637d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16389c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
163952e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1640f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1641d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16424aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
164352e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
164415bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1645526dfc15SBarry Smith   }
1646a23d5eceSKris Buschelman 
1647526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1648526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1649526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1650a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1651a23d5eceSKris Buschelman }
1652a23d5eceSKris Buschelman EXTERN_C_END
1653a23d5eceSKris Buschelman 
16545c9eb25fSBarry Smith EXTERN_C_BEGIN
1655611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1656611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1657611f576cSBarry Smith #endif
1658611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16595c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1660611f576cSBarry Smith #endif
1661b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1662b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1663b5e56a35SBarry Smith #endif
16645c9eb25fSBarry Smith EXTERN_C_END
16655c9eb25fSBarry Smith 
16660bad9183SKris Buschelman /*MC
1667fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16680bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16690bad9183SKris Buschelman 
16700bad9183SKris Buschelman    Options Database Keys:
16710bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16720bad9183SKris Buschelman 
16730bad9183SKris Buschelman   Level: beginner
16740bad9183SKris Buschelman 
16750bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16760bad9183SKris Buschelman M*/
16770bad9183SKris Buschelman 
1678a23d5eceSKris Buschelman EXTERN_C_BEGIN
1679a23d5eceSKris Buschelman #undef __FUNCT__
16804a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1681be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1682b5df2d14SHong Zhang {
1683b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1684dfbe8321SBarry Smith   PetscErrorCode ierr;
1685b5df2d14SHong Zhang   PetscTruth     flg;
1686b5df2d14SHong Zhang 
1687b5df2d14SHong Zhang   PetscFunctionBegin;
1688b5df2d14SHong Zhang 
168938f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1690b0a32e0cSBarry Smith   B->data = (void*)b;
1691b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1692b5df2d14SHong Zhang 
1693b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1694b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1695b5df2d14SHong Zhang   B->mapping         = 0;
1696b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1697b5df2d14SHong Zhang 
1698b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16997adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17007adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1701b5df2d14SHong Zhang 
1702b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1703899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1704b5df2d14SHong Zhang 
1705b5df2d14SHong Zhang   /* build cache for off array entries formed */
17067adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1707b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1708b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1709b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1710b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang   /* stuff used in block assembly */
1713b5df2d14SHong Zhang   b->barray       = 0;
1714b5df2d14SHong Zhang 
1715b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1716b5df2d14SHong Zhang   b->lvec         = 0;
1717b5df2d14SHong Zhang   b->Mvctx        = 0;
171840781036SHong Zhang   b->slvec0       = 0;
171940781036SHong Zhang   b->slvec0b      = 0;
172040781036SHong Zhang   b->slvec1       = 0;
172140781036SHong Zhang   b->slvec1a      = 0;
172240781036SHong Zhang   b->slvec1b      = 0;
172340781036SHong Zhang   b->sMvctx       = 0;
1724b5df2d14SHong Zhang 
1725b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1726b5df2d14SHong Zhang   b->rowindices   = 0;
1727b5df2d14SHong Zhang   b->rowvalues    = 0;
1728b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1729b5df2d14SHong Zhang 
1730b5df2d14SHong Zhang   /* hash table stuff */
1731b5df2d14SHong Zhang   b->ht           = 0;
1732b5df2d14SHong Zhang   b->hd           = 0;
1733b5df2d14SHong Zhang   b->ht_size      = 0;
1734b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1735b5df2d14SHong Zhang   b->ht_fact      = 0;
1736b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1737b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1738b5df2d14SHong Zhang 
173959ffdab8SBarry Smith   b->in_loc       = 0;
174059ffdab8SBarry Smith   b->v_loc        = 0;
174159ffdab8SBarry Smith   b->n_loc        = 0;
17427adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17438c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1744b5df2d14SHong Zhang     if (flg) {
1745f6275e2eSBarry Smith       PetscReal fact = 1.39;
17464e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17478c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1748b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1749b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17501e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1751b5df2d14SHong Zhang     }
17528c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17538c07d4e3SBarry Smith 
1754b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1755ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1756b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1757b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1758b5e56a35SBarry Smith #endif
1759611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1760ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17615c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17625c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1763611f576cSBarry Smith #endif
1764611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1765ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17665c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17675c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1768611f576cSBarry Smith #endif
1769b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1770b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1771b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1772b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1773b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1774b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1775b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1776b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1777b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1778a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1779a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1780a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
178123ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
178223ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178323ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178423ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1786b5df2d14SHong Zhang   PetscFunctionReturn(0);
1787b5df2d14SHong Zhang }
1788273d9f13SBarry Smith EXTERN_C_END
1789b5df2d14SHong Zhang 
1790209238afSKris Buschelman /*MC
1791002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1792209238afSKris Buschelman 
1793209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1794209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1795209238afSKris Buschelman 
1796209238afSKris Buschelman    Options Database Keys:
1797209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1798209238afSKris Buschelman 
1799209238afSKris Buschelman   Level: beginner
1800209238afSKris Buschelman 
1801209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1802209238afSKris Buschelman M*/
1803209238afSKris Buschelman 
1804209238afSKris Buschelman EXTERN_C_BEGIN
1805209238afSKris Buschelman #undef __FUNCT__
1806209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1807be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1808dfbe8321SBarry Smith {
18096849ba73SBarry Smith   PetscErrorCode ierr;
18101302d50aSBarry Smith   PetscMPIInt    size;
1811209238afSKris Buschelman 
1812209238afSKris Buschelman   PetscFunctionBegin;
18137adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1814209238afSKris Buschelman   if (size == 1) {
1815209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1816209238afSKris Buschelman   } else {
1817209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1818209238afSKris Buschelman   }
1819209238afSKris Buschelman   PetscFunctionReturn(0);
1820209238afSKris Buschelman }
1821209238afSKris Buschelman EXTERN_C_END
1822209238afSKris Buschelman 
18234a2ae208SSatish Balay #undef __FUNCT__
18244a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1825b5df2d14SHong Zhang /*@C
1826b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1827b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1828b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1829b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1830b5df2d14SHong Zhang 
1831b5df2d14SHong Zhang    Collective on Mat
1832b5df2d14SHong Zhang 
1833b5df2d14SHong Zhang    Input Parameters:
1834b5df2d14SHong Zhang +  A - the matrix
1835b5df2d14SHong Zhang .  bs   - size of blockk
1836b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1837b5df2d14SHong Zhang            submatrix  (same for all local rows)
1838b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18396d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18406d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18416d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1842b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1843b5df2d14SHong Zhang            submatrix (same for all local rows).
1844b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1845b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1846b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang    Options Database Keys:
1850b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1851b5df2d14SHong Zhang                      block calculations (much slower)
1852b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1853b5df2d14SHong Zhang 
1854b5df2d14SHong Zhang    Notes:
1855b5df2d14SHong Zhang 
1856b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1857b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1858b5df2d14SHong Zhang 
185949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
186049a6f317SBarry Smith 
1861b5df2d14SHong Zhang    Storage Information:
1862b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1863b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1864b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1865b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1868b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1869b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1870b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1871b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1872b5df2d14SHong Zhang 
1873aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1874aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1875aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1876aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1877aa95bbe8SBarry Smith 
1878b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1879b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1880b5df2d14SHong Zhang 
1881b5df2d14SHong Zhang .vb
1882b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1883b5df2d14SHong Zhang           -------------------
1884b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1885b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1886b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1887b5df2d14SHong Zhang           -------------------
1888b5df2d14SHong Zhang .ve
1889b5df2d14SHong Zhang 
1890b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1891b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18926d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18936d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1894b5df2d14SHong Zhang 
18956d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18966d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1897b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1898b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1899b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1900b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1901b5df2d14SHong Zhang    matrices.
1902b5df2d14SHong Zhang 
1903b5df2d14SHong Zhang    Level: intermediate
1904b5df2d14SHong Zhang 
1905b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1906b5df2d14SHong Zhang 
1907b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1908b5df2d14SHong Zhang @*/
1909be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1910b5df2d14SHong Zhang {
19111302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1912b5df2d14SHong Zhang 
1913b5df2d14SHong Zhang   PetscFunctionBegin;
1914a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1915a23d5eceSKris Buschelman   if (f) {
1916a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1917b5df2d14SHong Zhang   }
1918b5df2d14SHong Zhang   PetscFunctionReturn(0);
1919b5df2d14SHong Zhang }
1920b5df2d14SHong Zhang 
19214a2ae208SSatish Balay #undef __FUNCT__
19224a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1923a30f8f8cSSatish Balay /*@C
1924a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1925a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1926a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1927a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1928a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1929a30f8f8cSSatish Balay 
1930a30f8f8cSSatish Balay    Collective on MPI_Comm
1931a30f8f8cSSatish Balay 
1932a30f8f8cSSatish Balay    Input Parameters:
1933a30f8f8cSSatish Balay +  comm - MPI communicator
1934a30f8f8cSSatish Balay .  bs   - size of blockk
1935a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1936a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1937a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1938a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1939a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1940a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1941a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1942a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1943a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1944a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1945a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19466d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19476d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19486d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1949a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1950a30f8f8cSSatish Balay            submatrix (same for all local rows).
1951a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1952a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1953a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1954a30f8f8cSSatish Balay 
1955a30f8f8cSSatish Balay    Output Parameter:
1956a30f8f8cSSatish Balay .  A - the matrix
1957a30f8f8cSSatish Balay 
1958a30f8f8cSSatish Balay    Options Database Keys:
1959a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1960a30f8f8cSSatish Balay                      block calculations (much slower)
1961a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1962a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1963a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1964a30f8f8cSSatish Balay 
1965175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1966ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1967175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1968175b88e8SBarry Smith 
1969a30f8f8cSSatish Balay    Notes:
1970d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19716d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1972d1be2dadSMatthew Knepley 
1973a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1974a30f8f8cSSatish Balay    (possibly both).
1975a30f8f8cSSatish Balay 
1976a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1977a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1978a30f8f8cSSatish Balay 
197949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
198049a6f317SBarry Smith 
1981a30f8f8cSSatish Balay    Storage Information:
1982a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1983a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1984a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1985a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1986a30f8f8cSSatish Balay 
1987a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1988a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1989a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1990a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1991a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1992a30f8f8cSSatish Balay 
1993a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1994a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1995a30f8f8cSSatish Balay 
1996a30f8f8cSSatish Balay .vb
1997a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1998a30f8f8cSSatish Balay           -------------------
1999a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2000a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2001a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2002a30f8f8cSSatish Balay           -------------------
2003a30f8f8cSSatish Balay .ve
2004a30f8f8cSSatish Balay 
2005a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2006a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20076d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20086d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2009a30f8f8cSSatish Balay 
20106d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20116d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2012a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2013a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2014a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2015a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2016a30f8f8cSSatish Balay    matrices.
2017a30f8f8cSSatish Balay 
2018a30f8f8cSSatish Balay    Level: intermediate
2019a30f8f8cSSatish Balay 
2020a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2021a30f8f8cSSatish Balay 
2022a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2023a30f8f8cSSatish Balay @*/
2024a30f8f8cSSatish Balay 
2025be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2026a30f8f8cSSatish Balay {
20276849ba73SBarry Smith   PetscErrorCode ierr;
20281302d50aSBarry Smith   PetscMPIInt    size;
2029a30f8f8cSSatish Balay 
2030a30f8f8cSSatish Balay   PetscFunctionBegin;
2031f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2032f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2033273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2034273d9f13SBarry Smith   if (size > 1) {
2035b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2036b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2037273d9f13SBarry Smith   } else {
2038273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2039273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2040273d9f13SBarry Smith   }
2041a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2042a30f8f8cSSatish Balay }
2043a30f8f8cSSatish Balay 
2044a30f8f8cSSatish Balay 
20454a2ae208SSatish Balay #undef __FUNCT__
20464a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20476849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2048a30f8f8cSSatish Balay {
2049a30f8f8cSSatish Balay   Mat            mat;
2050a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2051dfbe8321SBarry Smith   PetscErrorCode ierr;
2052d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2053387bc808SHong Zhang   PetscScalar    *array;
2054a30f8f8cSSatish Balay 
2055a30f8f8cSSatish Balay   PetscFunctionBegin;
2056a30f8f8cSSatish Balay   *newmat       = 0;
20577adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2058d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20597adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20601d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
206126283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
206226283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2063e1b6402fSHong Zhang 
2064d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2065273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20677fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20687fff6886SHong Zhang 
2069b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2070a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2071a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2072a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2073a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2074a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2075a30f8f8cSSatish Balay 
2076899cda47SBarry Smith 
2077a30f8f8cSSatish Balay   a->size         = oldmat->size;
2078a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2079a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2080a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2081a30f8f8cSSatish Balay   a->rowindices   = 0;
2082a30f8f8cSSatish Balay   a->rowvalues    = 0;
2083a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2084a30f8f8cSSatish Balay   a->barray       = 0;
2085899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2086899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2087899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2088899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2089a30f8f8cSSatish Balay 
2090a30f8f8cSSatish Balay   /* hash table stuff */
2091a30f8f8cSSatish Balay   a->ht           = 0;
2092a30f8f8cSSatish Balay   a->hd           = 0;
2093a30f8f8cSSatish Balay   a->ht_size      = 0;
2094a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2095a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2096a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2097a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2098a30f8f8cSSatish Balay 
2099899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2100a30f8f8cSSatish Balay   if (oldmat->colmap) {
2101a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2102a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay #else
21041302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21061302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2107a30f8f8cSSatish Balay #endif
2108a30f8f8cSSatish Balay   } else a->colmap = 0;
2109387bc808SHong Zhang 
2110a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21111302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
211252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21131302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2114a30f8f8cSSatish Balay   } else a->garray = 0;
2115a30f8f8cSSatish Balay 
2116533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2117a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
211852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2119a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
212182327fa8SHong Zhang 
212282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
212352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2126387bc808SHong Zhang 
2127387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21281ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2129387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2130387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21311ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21321ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2133387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21341ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
213752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
213852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
213952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2140387bc808SHong Zhang 
2141387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2142387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2143387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214582327fa8SHong Zhang 
2146a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
214752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2148a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
214952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21507adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay   *newmat = mat;
2152a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2153a30f8f8cSSatish Balay }
2154a30f8f8cSSatish Balay 
21554a2ae208SSatish Balay #undef __FUNCT__
21564a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2157a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2158a30f8f8cSSatish Balay {
2159a30f8f8cSSatish Balay   Mat            A;
21606849ba73SBarry Smith   PetscErrorCode ierr;
216113f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216287828ca2SBarry Smith   PetscScalar    *vals,*buf;
2163a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2164a30f8f8cSSatish Balay   MPI_Status     status;
2165e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
216613f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21672fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21681302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21691302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21701302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
217113f74950SBarry Smith   int            fd;
2172a30f8f8cSSatish Balay 
2173a30f8f8cSSatish Balay   PetscFunctionBegin;
217477925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21758c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21768c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2177a30f8f8cSSatish Balay 
2178a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay   if (!rank) {
2181b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2183*e32f2f54SBarry Smith     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2184a30f8f8cSSatish Balay     if (header[3] < 0) {
2185*e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2186a30f8f8cSSatish Balay     }
2187a30f8f8cSSatish Balay   }
2188a30f8f8cSSatish Balay 
2189a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2190a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2191a30f8f8cSSatish Balay 
2192*e32f2f54SBarry Smith   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
2193a30f8f8cSSatish Balay 
2194a30f8f8cSSatish Balay   /*
2195a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2196a30f8f8cSSatish Balay      divisible by the blocksize
2197a30f8f8cSSatish Balay   */
2198a30f8f8cSSatish Balay   Mbs        = M/bs;
2199a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2200a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2201a30f8f8cSSatish Balay   else                  Mbs++;
2202a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
22031e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2204a30f8f8cSSatish Balay   }
2205a30f8f8cSSatish Balay 
2206a30f8f8cSSatish Balay   /* determine ownership of all rows */
2207a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2208a30f8f8cSSatish Balay   m          = mbs*bs;
220974ed9c26SBarry Smith   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2210e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2211e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay   rowners[0] = 0;
2213a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2214a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2215a30f8f8cSSatish Balay   rstart = rowners[rank];
2216a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2217a30f8f8cSSatish Balay 
2218a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22192fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay   if (!rank) {
22211302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2224a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2226a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   } else {
2229a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay   }
2231a30f8f8cSSatish Balay 
22320222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2233a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22341302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22351302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2236a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2237a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2238a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2239a30f8f8cSSatish Balay       }
2240a30f8f8cSSatish Balay     }
2241a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2242a30f8f8cSSatish Balay 
2243a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2244a30f8f8cSSatish Balay     maxnz = 0;
2245a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2246a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2247a30f8f8cSSatish Balay     }
22481302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay 
2250a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2251a30f8f8cSSatish Balay     nz     = procsnz[0];
22521302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2253a30f8f8cSSatish Balay     mycols = ibuf;
2254a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2255a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2257a30f8f8cSSatish Balay 
2258a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2259a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2260a30f8f8cSSatish Balay       nz   = procsnz[i];
2261a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2262a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2263a30f8f8cSSatish Balay     }
2264a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2265a30f8f8cSSatish Balay     if (size != 1) {
2266a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2267a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2269a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2270a30f8f8cSSatish Balay     }
2271a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22720222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2273a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2274a30f8f8cSSatish Balay     nz = 0;
2275a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2276a30f8f8cSSatish Balay       nz += locrowlens[i];
2277a30f8f8cSSatish Balay     }
22781302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2279a30f8f8cSSatish Balay     mycols = ibuf;
2280a30f8f8cSSatish Balay     /* receive message of column indices*/
2281a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2282a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
2283*e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2284a30f8f8cSSatish Balay   }
2285a30f8f8cSSatish Balay 
2286a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
228774ed9c26SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
228874ed9c26SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
228974ed9c26SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229074ed9c26SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229174ed9c26SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229274ed9c26SBarry Smith   rowcount = 0;
229374ed9c26SBarry Smith   nzcount  = 0;
2294a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2295a30f8f8cSSatish Balay     dcount  = 0;
2296a30f8f8cSSatish Balay     odcount = 0;
2297a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2298a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2299a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23000222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2301a30f8f8cSSatish Balay         if (!mask[tmp]) {
2302a30f8f8cSSatish Balay           mask[tmp] = 1;
23030222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23040222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2305a30f8f8cSSatish Balay         }
2306a30f8f8cSSatish Balay       }
2307a30f8f8cSSatish Balay       rowcount++;
2308a30f8f8cSSatish Balay     }
2309a30f8f8cSSatish Balay 
23100222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23110222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2312a30f8f8cSSatish Balay 
2313a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2314a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2315a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2316a30f8f8cSSatish Balay   }
2317a30f8f8cSSatish Balay 
2318a30f8f8cSSatish Balay   /* create our matrix */
2319f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2320f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
232122191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232217fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
232322191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2324a30f8f8cSSatish Balay 
2325a30f8f8cSSatish Balay   if (!rank) {
232687828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2327a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2328a30f8f8cSSatish Balay     nz = procsnz[0];
2329a30f8f8cSSatish Balay     vals = buf;
2330a30f8f8cSSatish Balay     mycols = ibuf;
2331a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2332a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2333a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2334a30f8f8cSSatish Balay 
2335a30f8f8cSSatish Balay     /* insert into matrix */
2336a30f8f8cSSatish Balay     jj      = rstart*bs;
2337a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23387e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2339a30f8f8cSSatish Balay       mycols += locrowlens[i];
2340a30f8f8cSSatish Balay       vals   += locrowlens[i];
2341a30f8f8cSSatish Balay       jj++;
2342a30f8f8cSSatish Balay     }
23437e06b45fSHong Zhang 
2344a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2345a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2346a30f8f8cSSatish Balay       nz   = procsnz[i];
2347a30f8f8cSSatish Balay       vals = buf;
2348a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23497adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2350a30f8f8cSSatish Balay     }
2351a30f8f8cSSatish Balay     /* the last proc */
2352a30f8f8cSSatish Balay     if (size != 1){
2353a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2354a30f8f8cSSatish Balay       vals = buf;
2355a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2356a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23577adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay     }
2359a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23607e06b45fSHong Zhang 
2361a30f8f8cSSatish Balay   } else {
2362a30f8f8cSSatish Balay     /* receive numeric values */
236387828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2364a30f8f8cSSatish Balay 
2365a30f8f8cSSatish Balay     /* receive message of values*/
2366a30f8f8cSSatish Balay     vals   = buf;
2367a30f8f8cSSatish Balay     mycols = ibuf;
23687adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2369a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2370*e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2371a30f8f8cSSatish Balay 
2372a30f8f8cSSatish Balay     /* insert into matrix */
2373a30f8f8cSSatish Balay     jj      = rstart*bs;
2374a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2375a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2376a30f8f8cSSatish Balay       mycols += locrowlens[i];
2377a30f8f8cSSatish Balay       vals   += locrowlens[i];
2378a30f8f8cSSatish Balay       jj++;
2379a30f8f8cSSatish Balay     }
2380a30f8f8cSSatish Balay   }
23817e06b45fSHong Zhang 
2382a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2383a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2384a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
238574ed9c26SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
238674ed9c26SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
238774ed9c26SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2388a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2389a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239022191285SKris Buschelman   *newmat = A;
2391a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2392a30f8f8cSSatish Balay }
2393a30f8f8cSSatish Balay 
23944a2ae208SSatish Balay #undef __FUNCT__
23954a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2396dcf5cc72SBarry Smith /*XXXXX@
2397a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2398a30f8f8cSSatish Balay 
2399a30f8f8cSSatish Balay    Input Parameters:
2400a30f8f8cSSatish Balay .  mat  - the matrix
2401a30f8f8cSSatish Balay .  fact - factor
2402a30f8f8cSSatish Balay 
2403a30f8f8cSSatish Balay    Collective on Mat
2404a30f8f8cSSatish Balay 
2405a30f8f8cSSatish Balay    Level: advanced
2406a30f8f8cSSatish Balay 
2407a30f8f8cSSatish Balay   Notes:
2408a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2409a30f8f8cSSatish Balay 
2410a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2411a30f8f8cSSatish Balay 
2412a30f8f8cSSatish Balay .seealso: MatSetOption()
2413dcf5cc72SBarry Smith @XXXXX*/
2414dcf5cc72SBarry Smith 
241524d5174aSHong Zhang 
24164a2ae208SSatish Balay #undef __FUNCT__
2417985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2418985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
241924d5174aSHong Zhang {
242024d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2421f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2422ca54ac64SHong Zhang   PetscReal      atmp;
242387828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2424dfbe8321SBarry Smith   PetscErrorCode ierr;
24251302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24261302d50aSBarry Smith   PetscMPIInt    rank,size;
24271302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
242887828ca2SBarry Smith   PetscScalar    *va;
24298a1c53f2SBarry Smith   MatScalar      *ba;
2430f4c0e9e4SHong Zhang   MPI_Status     stat;
243124d5174aSHong Zhang 
243224d5174aSHong Zhang   PetscFunctionBegin;
2433*e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2434985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24351ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2436f4c0e9e4SHong Zhang 
24377adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24387adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2439f4c0e9e4SHong Zhang 
2440d0f46423SBarry Smith   bs   = A->rmap->bs;
2441f4c0e9e4SHong Zhang   mbs  = a->mbs;
2442f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2443f4c0e9e4SHong Zhang   ba   = b->a;
2444f4c0e9e4SHong Zhang   bi   = b->i;
2445f4c0e9e4SHong Zhang   bj   = b->j;
2446f4c0e9e4SHong Zhang 
2447f4c0e9e4SHong Zhang   /* find ownerships */
2448d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2449f4c0e9e4SHong Zhang 
2450f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245182502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2452ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2453f4c0e9e4SHong Zhang 
2454f4c0e9e4SHong Zhang   /* row_max for B */
2455b8475685SHong Zhang   if (rank != size-1){
2456f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2457f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2458f4c0e9e4SHong Zhang       brow  = bs*i;
2459f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2460f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2461f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2462ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2464f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2465f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2466ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2467ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2468f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2469f4c0e9e4SHong Zhang           }
2470f4c0e9e4SHong Zhang         }
2471f4c0e9e4SHong Zhang         bj++;
2472f4c0e9e4SHong Zhang       }
2473f4c0e9e4SHong Zhang     }
2474f4c0e9e4SHong Zhang 
2475f4c0e9e4SHong Zhang     /* send values to its owners */
2476f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2477f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2478ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24797adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2480ca54ac64SHong Zhang     }
2481f4c0e9e4SHong Zhang   }
2482f4c0e9e4SHong Zhang 
2483f4c0e9e4SHong Zhang   /* receive values */
2484ca54ac64SHong Zhang   if (rank){
2485f4c0e9e4SHong Zhang     rvalues = work;
2486ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2487f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24887adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2489f4c0e9e4SHong Zhang       /* process values */
2490f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2491ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2492f4c0e9e4SHong Zhang       }
2493f4c0e9e4SHong Zhang     }
2494ca54ac64SHong Zhang   }
2495f4c0e9e4SHong Zhang 
24961ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2497ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
249824d5174aSHong Zhang   PetscFunctionReturn(0);
249924d5174aSHong Zhang }
25002798e883SHong Zhang 
25012798e883SHong Zhang #undef __FUNCT__
250241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
250341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25042798e883SHong Zhang {
25052798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2506dfbe8321SBarry Smith   PetscErrorCode ierr;
2507d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2508fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2509ffe4fb16SHong Zhang   Vec            bb1;
2510ffe4fb16SHong Zhang 
2511ffe4fb16SHong Zhang   PetscFunctionBegin;
2512*e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2513*e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2514ffe4fb16SHong Zhang 
2515a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
251641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2517a2b30743SBarry Smith     PetscFunctionReturn(0);
2518a2b30743SBarry Smith   }
2519a2b30743SBarry Smith 
2520ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2521ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
252241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2523ffe4fb16SHong Zhang       its--;
2524ffe4fb16SHong Zhang     }
2525ffe4fb16SHong Zhang 
2526ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2527ffe4fb16SHong Zhang     while (its--){
2528ffe4fb16SHong Zhang 
2529ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2530ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2531ffe4fb16SHong Zhang 
2532ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25331ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25341ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2535ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25361ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2537ffe4fb16SHong Zhang 
2538efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2539ffe4fb16SHong Zhang 
2540ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25411ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25421ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2543ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25441ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2545ffe4fb16SHong Zhang 
2546ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2547fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2548ffe4fb16SHong Zhang 
2549ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25501ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25511ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2552ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2553ffe4fb16SHong Zhang 
2554ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2555ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang 
2557ffe4fb16SHong Zhang       /* local diagonal sweep */
255841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2559ffe4fb16SHong Zhang     }
2560ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2561fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2563fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2565fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2566fa22f6d0SBarry Smith     Vec               xx1;
2567fa22f6d0SBarry Smith     PetscTruth        hasop;
256820f1ed55SBarry Smith     const PetscScalar *diag;
2569887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
257020f1ed55SBarry Smith     PetscInt          i,n;
2571fa22f6d0SBarry Smith 
2572fa22f6d0SBarry Smith     if (!mat->xx1) {
2573fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2574fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2575fa22f6d0SBarry Smith     }
2576fa22f6d0SBarry Smith     xx1 = mat->xx1;
2577fa22f6d0SBarry Smith     bb1 = mat->bb1;
2578fa22f6d0SBarry Smith 
257941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2580fa22f6d0SBarry Smith 
2581fa22f6d0SBarry Smith     if (!mat->diag) {
2582effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2583fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2584fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2585fa22f6d0SBarry Smith     }
2586fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2587fa22f6d0SBarry Smith 
2588fa22f6d0SBarry Smith     if (hasop) {
2589fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2590887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259120f1ed55SBarry Smith     } else {
259220f1ed55SBarry Smith       /*
259320f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
259420f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2595887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259620f1ed55SBarry Smith       */
259720f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
259820f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
259920f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
260020f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
260120f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2602887ee2caSBarry Smith       if (omega == 1.0) {
260320f1ed55SBarry Smith 	for (i=0; i<n; i++) {
260420f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
260520f1ed55SBarry Smith 	}
260620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2607887ee2caSBarry Smith       } else {
2608887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2609887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2610887ee2caSBarry Smith 	}
2611887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2612887ee2caSBarry Smith       }
261320f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
261420f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
261520f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
261620f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
261720f1ed55SBarry Smith     }
2618fa22f6d0SBarry Smith 
2619fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2620fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2621fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2622fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2623fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2624fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2625fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2626fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2627fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2628fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2629effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2630fa22f6d0SBarry Smith 
2631fa22f6d0SBarry Smith     /* local sweep */
263241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2633fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2634ffe4fb16SHong Zhang   } else {
2635*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2636ffe4fb16SHong Zhang   }
2637ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2638ffe4fb16SHong Zhang }
2639ffe4fb16SHong Zhang 
2640ffe4fb16SHong Zhang #undef __FUNCT__
264141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
264241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2643ffe4fb16SHong Zhang {
2644ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2645dfbe8321SBarry Smith   PetscErrorCode ierr;
26462798e883SHong Zhang   Vec            lvec1,bb1;
26472798e883SHong Zhang 
26482798e883SHong Zhang   PetscFunctionBegin;
2649*e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2650*e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26512798e883SHong Zhang 
2652c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26532798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
265441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26552798e883SHong Zhang       its--;
26562798e883SHong Zhang     }
26572798e883SHong Zhang 
26582798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26592798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26602798e883SHong Zhang     while (its--){
2661ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26622798e883SHong Zhang 
26632798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26642798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2665efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26662798e883SHong Zhang 
2667ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26682798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2669ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26702798e883SHong Zhang 
26712798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2672efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26732798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26742798e883SHong Zhang 
2675ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26762798e883SHong Zhang 
2677c14dc6b6SHong Zhang       /* diagonal sweep */
267841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26792798e883SHong Zhang     }
26802798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26812798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2682c14dc6b6SHong Zhang   } else {
2683*e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2684c14dc6b6SHong Zhang   }
26852798e883SHong Zhang   PetscFunctionReturn(0);
26862798e883SHong Zhang }
26872798e883SHong Zhang 
2688