1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6f3da1532SBarry Smith #include "petscblaslapack.h" 7a30f8f8cSSatish Balay 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay EXTERN_C_BEGIN 254a2ae208SSatish Balay #undef __FUNCT__ 264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 28a30f8f8cSSatish Balay { 29f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 30dfbe8321SBarry Smith PetscErrorCode ierr; 31a30f8f8cSSatish Balay 32a30f8f8cSSatish Balay PetscFunctionBegin; 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 35a30f8f8cSSatish Balay PetscFunctionReturn(0); 36a30f8f8cSSatish Balay } 37a30f8f8cSSatish Balay EXTERN_C_END 38a30f8f8cSSatish Balay 39a30f8f8cSSatish Balay EXTERN_C_BEGIN 404a2ae208SSatish Balay #undef __FUNCT__ 414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 43a30f8f8cSSatish Balay { 44f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 45dfbe8321SBarry Smith PetscErrorCode ierr; 46a30f8f8cSSatish Balay 47a30f8f8cSSatish Balay PetscFunctionBegin; 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 49a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 50a30f8f8cSSatish Balay PetscFunctionReturn(0); 51a30f8f8cSSatish Balay } 52a30f8f8cSSatish Balay EXTERN_C_END 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay 55a30f8f8cSSatish Balay #define CHUNKSIZE 10 56a30f8f8cSSatish Balay 57a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 58a30f8f8cSSatish Balay { \ 59a30f8f8cSSatish Balay \ 60a30f8f8cSSatish Balay brow = row/bs; \ 61a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 62a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 63a30f8f8cSSatish Balay bcol = col/bs; \ 64a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 65a30f8f8cSSatish Balay low = 0; high = nrow; \ 66a30f8f8cSSatish Balay while (high-low > 3) { \ 67a30f8f8cSSatish Balay t = (low+high)/2; \ 68a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 69a30f8f8cSSatish Balay else low = t; \ 70a30f8f8cSSatish Balay } \ 71a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 72a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 73a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 74a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 75a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 76a30f8f8cSSatish Balay else *bap = value; \ 77a30f8f8cSSatish Balay goto a_noinsert; \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay } \ 80a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 81*e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 82421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 83a30f8f8cSSatish Balay N = nrow++ - 1; \ 84a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 85a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 86a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 87a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 90a30f8f8cSSatish Balay rp[_i] = bcol; \ 91a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 92a30f8f8cSSatish Balay a_noinsert:; \ 93a30f8f8cSSatish Balay ailen[brow] = nrow; \ 94a30f8f8cSSatish Balay } 95e5e170daSBarry Smith 96a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 97a30f8f8cSSatish Balay { \ 98a30f8f8cSSatish Balay brow = row/bs; \ 99a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 100a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 101a30f8f8cSSatish Balay bcol = col/bs; \ 102a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 103a30f8f8cSSatish Balay low = 0; high = nrow; \ 104a30f8f8cSSatish Balay while (high-low > 3) { \ 105a30f8f8cSSatish Balay t = (low+high)/2; \ 106a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 107a30f8f8cSSatish Balay else low = t; \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 110a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 111a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 112a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 113a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 114a30f8f8cSSatish Balay else *bap = value; \ 115a30f8f8cSSatish Balay goto b_noinsert; \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay } \ 118a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 119*e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 120421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 121a30f8f8cSSatish Balay N = nrow++ - 1; \ 122a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 123a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 124a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 125a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 126a30f8f8cSSatish Balay } \ 127a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 128a30f8f8cSSatish Balay rp[_i] = bcol; \ 129a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 130a30f8f8cSSatish Balay b_noinsert:; \ 131a30f8f8cSSatish Balay bilen[brow] = nrow; \ 132a30f8f8cSSatish Balay } 133a30f8f8cSSatish Balay 134a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 135a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 136a30f8f8cSSatish Balay */ 1374a2ae208SSatish Balay #undef __FUNCT__ 138dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 139dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 140a30f8f8cSSatish Balay { 141a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 142a30f8f8cSSatish Balay MatScalar value; 143b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 144dfbe8321SBarry Smith PetscErrorCode ierr; 1451302d50aSBarry Smith PetscInt i,j,row,col; 146d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 147d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 148d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay /* Some Variables required in the macro */ 151a30f8f8cSSatish Balay Mat A = baij->A; 152a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1531302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 154a30f8f8cSSatish Balay MatScalar *aa=a->a; 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay Mat B = baij->B; 157a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1581302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 159a30f8f8cSSatish Balay MatScalar *ba=b->a; 160a30f8f8cSSatish Balay 1611302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1621302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 163a30f8f8cSSatish Balay MatScalar *ap,*bap; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay /* for stash */ 166910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 167910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 168a30f8f8cSSatish Balay 169a30f8f8cSSatish Balay PetscFunctionBegin; 17071fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 171a30f8f8cSSatish Balay if (!baij->donotstash){ 17259ffdab8SBarry Smith if (n > baij->n_loc) { 17359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17759ffdab8SBarry Smith baij->n_loc = n; 17859ffdab8SBarry Smith } 17959ffdab8SBarry Smith in_loc = baij->in_loc; 18059ffdab8SBarry Smith v_loc = baij->v_loc; 181a30f8f8cSSatish Balay } 182a30f8f8cSSatish Balay 183a30f8f8cSSatish Balay for (i=0; i<m; i++) { 184a30f8f8cSSatish Balay if (im[i] < 0) continue; 1852515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 186*e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 187a30f8f8cSSatish Balay #endif 188a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 189a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 190a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19201b2bd88SHong Zhang if (a->ignore_ltriangular){ 19301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19401b2bd88SHong Zhang } else { 195*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19601b2bd88SHong Zhang } 19701b2bd88SHong Zhang } 198a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 199a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 200a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 201a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 202a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 203a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 204a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 205a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2062515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 207*e32f2f54SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);} 208a30f8f8cSSatish Balay #endif 209a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 210a30f8f8cSSatish Balay if (mat->was_assembled) { 211a30f8f8cSSatish Balay if (!baij->colmap) { 212653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 213a30f8f8cSSatish Balay } 214a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 215a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21671730473SSatish Balay col = col - 1; 217a30f8f8cSSatish Balay #else 21871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 219a30f8f8cSSatish Balay #endif 220a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 221a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 222a30f8f8cSSatish Balay col = in[j]; 223a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 224a30f8f8cSSatish Balay B = baij->B; 225a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 226a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 227a30f8f8cSSatish Balay ba=b->a; 22871730473SSatish Balay } else col += in[j]%bs; 229a30f8f8cSSatish Balay } else col = in[j]; 230a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 231a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 232a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay } else { /* off processor entry */ 236a30f8f8cSSatish Balay if (!baij->donotstash) { 237a30f8f8cSSatish Balay n_loc = 0; 238a30f8f8cSSatish Balay for (j=0; j<n; j++){ 239f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 240a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 241a30f8f8cSSatish Balay if (roworiented) { 242a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 243a30f8f8cSSatish Balay } else { 244a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay n_loc++; 247a30f8f8cSSatish Balay } 248b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay PetscFunctionReturn(0); 253a30f8f8cSSatish Balay } 254a30f8f8cSSatish Balay 2554a2ae208SSatish Balay #undef __FUNCT__ 256dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 257dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 258a30f8f8cSSatish Balay { 2590880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 260f15d580aSBarry Smith const MatScalar *value; 261f15d580aSBarry Smith MatScalar *barray=baij->barray; 262f3f98c53SJed Brown PetscTruth roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 263dfbe8321SBarry Smith PetscErrorCode ierr; 264899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 265899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 266d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2670880e062SHong Zhang 268a30f8f8cSSatish Balay PetscFunctionBegin; 2690880e062SHong Zhang if(!barray) { 2700880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2710880e062SHong Zhang baij->barray = barray; 2720880e062SHong Zhang } 2730880e062SHong Zhang 2740880e062SHong Zhang if (roworiented) { 2750880e062SHong Zhang stepval = (n-1)*bs; 2760880e062SHong Zhang } else { 2770880e062SHong Zhang stepval = (m-1)*bs; 2780880e062SHong Zhang } 2790880e062SHong Zhang for (i=0; i<m; i++) { 2800880e062SHong Zhang if (im[i] < 0) continue; 2812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 282*e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2830880e062SHong Zhang #endif 2840880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2850880e062SHong Zhang row = im[i] - rstart; 2860880e062SHong Zhang for (j=0; j<n; j++) { 287f3f98c53SJed Brown if (im[i] > in[j]) { 288f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 289*e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 290f3f98c53SJed Brown } 2910880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2920880e062SHong Zhang if ((roworiented) && (n == 1)) { 293f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2940880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 295f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2960880e062SHong Zhang } else { /* Here a copy is required */ 2970880e062SHong Zhang if (roworiented) { 2980880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2990880e062SHong Zhang } else { 3000880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3010880e062SHong Zhang } 3020880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3030880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3040880e062SHong Zhang *barray++ = *value++; 3050880e062SHong Zhang } 3060880e062SHong Zhang } 3070880e062SHong Zhang barray -=bs2; 3080880e062SHong Zhang } 3090880e062SHong Zhang 3100880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3110880e062SHong Zhang col = in[j] - cstart; 3120880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3130880e062SHong Zhang } 3140880e062SHong Zhang else if (in[j] < 0) continue; 3152515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 316*e32f2f54SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3170880e062SHong Zhang #endif 3180880e062SHong Zhang else { 3190880e062SHong Zhang if (mat->was_assembled) { 3200880e062SHong Zhang if (!baij->colmap) { 321653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3220880e062SHong Zhang } 3230880e062SHong Zhang 3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3250880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3261302d50aSBarry Smith { PetscInt data; 3270880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 328*e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3290880e062SHong Zhang } 3300880e062SHong Zhang #else 331*e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3320880e062SHong Zhang #endif 3330880e062SHong Zhang #endif 3340880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3350880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3360880e062SHong Zhang col = (col - 1)/bs; 3370880e062SHong Zhang #else 3380880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3390880e062SHong Zhang #endif 3400880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3410880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3420880e062SHong Zhang col = in[j]; 3430880e062SHong Zhang } 3440880e062SHong Zhang } 3450880e062SHong Zhang else col = in[j]; 346e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3470880e062SHong Zhang } 3480880e062SHong Zhang } 3490880e062SHong Zhang } else { 3500880e062SHong Zhang if (!baij->donotstash) { 3510880e062SHong Zhang if (roworiented) { 3520880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } else { 3540880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang } 3590880e062SHong Zhang PetscFunctionReturn(0); 360a30f8f8cSSatish Balay } 361a30f8f8cSSatish Balay 3624a2ae208SSatish Balay #undef __FUNCT__ 3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 365a30f8f8cSSatish Balay { 366f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3676849ba73SBarry Smith PetscErrorCode ierr; 368d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 369d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 370a30f8f8cSSatish Balay 371a30f8f8cSSatish Balay PetscFunctionBegin; 372a30f8f8cSSatish Balay for (i=0; i<m; i++) { 373*e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 374*e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 375a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 376a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 377a30f8f8cSSatish Balay for (j=0; j<n; j++) { 378*e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 379*e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 380a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 381a30f8f8cSSatish Balay col = idxn[j] - bscstart; 382c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } else { 384a30f8f8cSSatish Balay if (!baij->colmap) { 385653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 386a30f8f8cSSatish Balay } 387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 388a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 389a30f8f8cSSatish Balay data --; 390a30f8f8cSSatish Balay #else 391a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 392a30f8f8cSSatish Balay #endif 393a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 394a30f8f8cSSatish Balay else { 395a30f8f8cSSatish Balay col = data + idxn[j]%bs; 396e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay } else { 401*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay PetscFunctionReturn(0); 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay 4074a2ae208SSatish Balay #undef __FUNCT__ 4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 410a30f8f8cSSatish Balay { 411a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 412dfbe8321SBarry Smith PetscErrorCode ierr; 413a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 414a30f8f8cSSatish Balay 415a30f8f8cSSatish Balay PetscFunctionBegin; 416a30f8f8cSSatish Balay if (baij->size == 1) { 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } else { 419a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 420f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 422a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 423a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 424a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4257adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 426a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 427a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4280b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4290b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4300b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4310b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 432899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 433d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4340b8dc8d2SHong Zhang MatScalar *v; 4350b8dc8d2SHong Zhang 43674ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 437d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4380b8dc8d2SHong Zhang /* Amat */ 4390b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4420b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4440b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4450b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4460b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4490b8dc8d2SHong Zhang /* non-diagonal block */ 4500b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang } 4550b8dc8d2SHong Zhang /* Bmat */ 4560b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4570b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4580b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4590b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4600b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4610b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4620b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4630b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4640b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4650b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4660b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 4700b8dc8d2SHong Zhang } 471d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4720b8dc8d2SHong Zhang *norm = 0.0; 473d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4740b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4750b8dc8d2SHong Zhang } 47674ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay } 481a30f8f8cSSatish Balay PetscFunctionReturn(0); 482a30f8f8cSSatish Balay } 483a30f8f8cSSatish Balay 4844a2ae208SSatish Balay #undef __FUNCT__ 4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 487a30f8f8cSSatish Balay { 488a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 489dfbe8321SBarry Smith PetscErrorCode ierr; 4901302d50aSBarry Smith PetscInt nstash,reallocs; 491a30f8f8cSSatish Balay InsertMode addv; 492a30f8f8cSSatish Balay 493a30f8f8cSSatish Balay PetscFunctionBegin; 494a30f8f8cSSatish Balay if (baij->donotstash) { 495a30f8f8cSSatish Balay PetscFunctionReturn(0); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay 498a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4997adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 500a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 501*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 504a30f8f8cSSatish Balay 505d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5081e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 509a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5101e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 511a30f8f8cSSatish Balay PetscFunctionReturn(0); 512a30f8f8cSSatish Balay } 513a30f8f8cSSatish Balay 5144a2ae208SSatish Balay #undef __FUNCT__ 5154a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 516dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 517a30f8f8cSSatish Balay { 518a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 519a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5206849ba73SBarry Smith PetscErrorCode ierr; 52113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 522e44c0bd4SBarry Smith PetscInt *row,*col; 523e44c0bd4SBarry Smith PetscTruth other_disassembled; 52413f74950SBarry Smith PetscMPIInt n; 525a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 526a30f8f8cSSatish Balay MatScalar *val; 527a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 528a30f8f8cSSatish Balay 52991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 530a30f8f8cSSatish Balay PetscFunctionBegin; 531a30f8f8cSSatish Balay 532a30f8f8cSSatish Balay if (!baij->donotstash) { 533a30f8f8cSSatish Balay while (1) { 534a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 535a30f8f8cSSatish Balay if (!flg) break; 536a30f8f8cSSatish Balay 537a30f8f8cSSatish Balay for (i=0; i<n;) { 538a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 539a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 540a30f8f8cSSatish Balay if (j < n) ncols = j-i; 541a30f8f8cSSatish Balay else ncols = n-i; 542a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 543dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 544a30f8f8cSSatish Balay i = j; 545a30f8f8cSSatish Balay } 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 548a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 549a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 550a30f8f8cSSatish Balay restore the original flags */ 551a30f8f8cSSatish Balay r1 = baij->roworiented; 552a30f8f8cSSatish Balay r2 = a->roworiented; 55391c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 554a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 555a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 557a30f8f8cSSatish Balay while (1) { 558a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 559a30f8f8cSSatish Balay if (!flg) break; 560a30f8f8cSSatish Balay 561a30f8f8cSSatish Balay for (i=0; i<n;) { 562a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 563a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 564a30f8f8cSSatish Balay if (j < n) ncols = j-i; 565a30f8f8cSSatish Balay else ncols = n-i; 566dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 567a30f8f8cSSatish Balay i = j; 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 571a30f8f8cSSatish Balay baij->roworiented = r1; 572a30f8f8cSSatish Balay a->roworiented = r2; 57391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 574a30f8f8cSSatish Balay } 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 577a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 578a30f8f8cSSatish Balay 579a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 580a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 581a30f8f8cSSatish Balay /* 582a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 583a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 584a30f8f8cSSatish Balay */ 585a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5867adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 587a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 588c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay } 591a30f8f8cSSatish Balay 592a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59340781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 594a30f8f8cSSatish Balay } 59591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 596a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 597a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 598a30f8f8cSSatish Balay 59974ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 600a30f8f8cSSatish Balay baij->rowvalues = 0; 6015222a1afSHong Zhang 602a30f8f8cSSatish Balay PetscFunctionReturn(0); 603a30f8f8cSSatish Balay } 604a30f8f8cSSatish Balay 605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6064a2ae208SSatish Balay #undef __FUNCT__ 6074a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6086849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 609a30f8f8cSSatish Balay { 610a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 611dfbe8321SBarry Smith PetscErrorCode ierr; 612d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6131302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61432077d6dSBarry Smith PetscTruth iascii,isdraw; 615b0a32e0cSBarry Smith PetscViewer sviewer; 616f3ef73ceSBarry Smith PetscViewerFormat format; 617a30f8f8cSSatish Balay 618a30f8f8cSSatish Balay PetscFunctionBegin; 61932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 620fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 62132077d6dSBarry Smith if (iascii) { 622b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 623456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 624a30f8f8cSSatish Balay MatInfo info; 6257adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 628d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 629d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 63177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 63377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 634b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63507d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 636a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 637a30f8f8cSSatish Balay PetscFunctionReturn(0); 638fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 640a30f8f8cSSatish Balay PetscFunctionReturn(0); 641c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 642c1490034SHong Zhang PetscFunctionReturn(0); 643a30f8f8cSSatish Balay } 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay 646a30f8f8cSSatish Balay if (isdraw) { 647b0a32e0cSBarry Smith PetscDraw draw; 648a30f8f8cSSatish Balay PetscTruth isnull; 649b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 650b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 651a30f8f8cSSatish Balay } 652a30f8f8cSSatish Balay 653a30f8f8cSSatish Balay if (size == 1) { 6547adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 655a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 656a30f8f8cSSatish Balay } else { 657a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 658a30f8f8cSSatish Balay Mat A; 65965d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 66065d70643SHong Zhang Mat_SeqBAIJ *Bloc; 661d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 662a30f8f8cSSatish Balay MatScalar *a; 663a30f8f8cSSatish Balay 664f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6657adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 666a30f8f8cSSatish Balay if (!rank) { 667f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } else { 669f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 670a30f8f8cSSatish Balay } 671f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 672d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 67352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay /* copy over the A part */ 67665d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 677a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6781302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 679a30f8f8cSSatish Balay 680a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 681e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 682a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 683a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 684e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 685a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 686dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 687a30f8f8cSSatish Balay col++; a += bs; 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay /* copy over the B part */ 69265d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69365d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 694a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 695e9f7bc9eSHong Zhang 696e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 697a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 698a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 699a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 700a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 701799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 702a30f8f8cSSatish Balay col++; a += bs; 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay } 705a30f8f8cSSatish Balay } 706a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 707a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 708a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 709a30f8f8cSSatish Balay /* 710a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 711b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 712a30f8f8cSSatish Balay */ 713b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71465d70643SHong Zhang if (!rank) { 7157adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 716a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 717a30f8f8cSSatish Balay } 718b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 719a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 720a30f8f8cSSatish Balay } 721a30f8f8cSSatish Balay PetscFunctionReturn(0); 722a30f8f8cSSatish Balay } 723a30f8f8cSSatish Balay 7244a2ae208SSatish Balay #undef __FUNCT__ 7254a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 726dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 727a30f8f8cSSatish Balay { 728dfbe8321SBarry Smith PetscErrorCode ierr; 72932077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 730a30f8f8cSSatish Balay 731a30f8f8cSSatish Balay PetscFunctionBegin; 73232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 733fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 734b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 735fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 737a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 738a30f8f8cSSatish Balay } else { 739*e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay PetscFunctionReturn(0); 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay 7444a2ae208SSatish Balay #undef __FUNCT__ 7454a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 746dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 747a30f8f8cSSatish Balay { 748a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 749dfbe8321SBarry Smith PetscErrorCode ierr; 750a30f8f8cSSatish Balay 751a30f8f8cSSatish Balay PetscFunctionBegin; 752a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 753d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 754a30f8f8cSSatish Balay #endif 755a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 756a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 758a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7609c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 761a30f8f8cSSatish Balay #else 76205b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 763a30f8f8cSSatish Balay #endif 76405b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 765a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 766a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76740781036SHong Zhang if (baij->slvec0) { 76840781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76940781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 77040781036SHong Zhang } 77140781036SHong Zhang if (baij->slvec1) { 77240781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 77340781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77440781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77540781036SHong Zhang } 77640781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 7775755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77905b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 780fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 781fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 782fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 78365460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE) 78405b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 785a30f8f8cSSatish Balay #endif 78659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 788899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 789a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 790901853e0SKris Buschelman 791dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 793901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 794901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 795901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 796a30f8f8cSSatish Balay PetscFunctionReturn(0); 797a30f8f8cSSatish Balay } 798a30f8f8cSSatish Balay 7994a2ae208SSatish Balay #undef __FUNCT__ 800547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 801547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 802547795f9SHong Zhang { 803547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 804547795f9SHong Zhang PetscErrorCode ierr; 805547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 806547795f9SHong Zhang PetscScalar *x,*from; 807547795f9SHong Zhang 808547795f9SHong Zhang PetscFunctionBegin; 809547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 810547795f9SHong Zhang if (nt != A->cmap->n) { 811*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 812547795f9SHong Zhang } 813547795f9SHong Zhang 814547795f9SHong Zhang /* diagonal part */ 815547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 816547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 817547795f9SHong Zhang 818547795f9SHong Zhang /* subdiagonal part */ 819547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 820547795f9SHong Zhang 821547795f9SHong Zhang /* copy x into the vec slvec0 */ 822547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 823547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 824547795f9SHong Zhang 825547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 827547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 828547795f9SHong Zhang 829547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 830547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 831547795f9SHong Zhang /* supperdiagonal part */ 832547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 833547795f9SHong Zhang PetscFunctionReturn(0); 834547795f9SHong Zhang } 835547795f9SHong Zhang 836547795f9SHong Zhang #undef __FUNCT__ 837a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 838dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 839a9d4b620SHong Zhang { 840a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 841dfbe8321SBarry Smith PetscErrorCode ierr; 842d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 843fa22f6d0SBarry Smith PetscScalar *x,*from; 844a9d4b620SHong Zhang 845a9d4b620SHong Zhang PetscFunctionBegin; 846a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 847d0f46423SBarry Smith if (nt != A->cmap->n) { 848*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 849a9d4b620SHong Zhang } 850a9d4b620SHong Zhang 851a9d4b620SHong Zhang /* diagonal part */ 852a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 853fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 854a9d4b620SHong Zhang 855a9d4b620SHong Zhang /* subdiagonal part */ 856a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 857fc165ae2SBarry Smith 858a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8591ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8601ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 861a9d4b620SHong Zhang 862fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 863fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8641ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 865fc165ae2SBarry Smith 866fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 867ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 868a9d4b620SHong Zhang /* supperdiagonal part */ 869a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 870a9d4b620SHong Zhang PetscFunctionReturn(0); 871a9d4b620SHong Zhang } 872a9d4b620SHong Zhang 873a9d4b620SHong Zhang #undef __FUNCT__ 87440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 875dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 876a30f8f8cSSatish Balay { 877a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 878dfbe8321SBarry Smith PetscErrorCode ierr; 8791302d50aSBarry Smith PetscInt nt; 880a30f8f8cSSatish Balay 881a30f8f8cSSatish Balay PetscFunctionBegin; 882a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 883d0f46423SBarry Smith if (nt != A->cmap->n) { 884*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 885a30f8f8cSSatish Balay } 886a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 887d0f46423SBarry Smith if (nt != A->rmap->N) { 888*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 889a30f8f8cSSatish Balay } 89065d70643SHong Zhang 891ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 892b941877fSHong Zhang /* do diagonal part */ 893b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 894b941877fSHong Zhang /* do supperdiagonal part */ 895ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 896b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 897b941877fSHong Zhang /* do subdiagonal part */ 898b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 899ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 900ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 90165d70643SHong Zhang 902a30f8f8cSSatish Balay PetscFunctionReturn(0); 903a30f8f8cSSatish Balay } 904a30f8f8cSSatish Balay 9054a2ae208SSatish Balay #undef __FUNCT__ 9064a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 907dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 908a30f8f8cSSatish Balay { 909de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 910dfbe8321SBarry Smith PetscErrorCode ierr; 911d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 912a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 913a9d4b620SHong Zhang 914a9d4b620SHong Zhang PetscFunctionBegin; 915a9d4b620SHong Zhang /* 9167adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9177adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 918a9d4b620SHong Zhang */ 919a9d4b620SHong Zhang /* diagonal part */ 920a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9212dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 922a9d4b620SHong Zhang 923a9d4b620SHong Zhang /* subdiagonal part */ 924a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 925a9d4b620SHong Zhang 926a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9271ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9281ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 929a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9301ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 931a9d4b620SHong Zhang 932ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9331ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 934ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 935a9d4b620SHong Zhang 936a9d4b620SHong Zhang /* supperdiagonal part */ 937a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 938a9d4b620SHong Zhang 939a9d4b620SHong Zhang PetscFunctionReturn(0); 940a9d4b620SHong Zhang } 941a9d4b620SHong Zhang 942a9d4b620SHong Zhang #undef __FUNCT__ 943a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 944dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 945a9d4b620SHong Zhang { 946a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 947dfbe8321SBarry Smith PetscErrorCode ierr; 948a30f8f8cSSatish Balay 949a30f8f8cSSatish Balay PetscFunctionBegin; 950ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 951b941877fSHong Zhang /* do diagonal part */ 952b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 953b941877fSHong Zhang /* do supperdiagonal part */ 954ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 955de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 956de8b6608SHong Zhang 957b941877fSHong Zhang /* do subdiagonal part */ 958a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 959ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 960ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 961aa482183SHong Zhang 962a30f8f8cSSatish Balay PetscFunctionReturn(0); 963a30f8f8cSSatish Balay } 964a30f8f8cSSatish Balay 965a30f8f8cSSatish Balay /* 966a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 967a30f8f8cSSatish Balay diagonal block 968a30f8f8cSSatish Balay */ 9694a2ae208SSatish Balay #undef __FUNCT__ 9704a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 971dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 972a30f8f8cSSatish Balay { 973a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 974dfbe8321SBarry Smith PetscErrorCode ierr; 975a30f8f8cSSatish Balay 976a30f8f8cSSatish Balay PetscFunctionBegin; 977*e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 978a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 979a30f8f8cSSatish Balay PetscFunctionReturn(0); 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay 9824a2ae208SSatish Balay #undef __FUNCT__ 9834a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 984f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 985a30f8f8cSSatish Balay { 986a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 987dfbe8321SBarry Smith PetscErrorCode ierr; 988a30f8f8cSSatish Balay 989a30f8f8cSSatish Balay PetscFunctionBegin; 990f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 991f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 992a30f8f8cSSatish Balay PetscFunctionReturn(0); 993a30f8f8cSSatish Balay } 994a30f8f8cSSatish Balay 9954a2ae208SSatish Balay #undef __FUNCT__ 9964a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9971302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 998a30f8f8cSSatish Balay { 999d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1000d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1001d0d4cfc2SHong Zhang PetscErrorCode ierr; 1002d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1003d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1004899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1005d0d4cfc2SHong Zhang 1006a30f8f8cSSatish Balay PetscFunctionBegin; 1007*e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1008d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1009d0d4cfc2SHong Zhang 1010d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1011d0d4cfc2SHong Zhang /* 1012d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1013d0d4cfc2SHong Zhang */ 1014d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1015d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1016d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1017d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1018d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1019d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1020d0d4cfc2SHong Zhang } 102174ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1022d0d4cfc2SHong Zhang } 1023d0d4cfc2SHong Zhang 1024*e32f2f54SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows") 1025d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1026d0d4cfc2SHong Zhang 1027d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1028d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1029d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1030d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1031d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1032d0d4cfc2SHong Zhang nztot = nzA + nzB; 1033d0d4cfc2SHong Zhang 1034d0d4cfc2SHong Zhang cmap = mat->garray; 1035d0d4cfc2SHong Zhang if (v || idx) { 1036d0d4cfc2SHong Zhang if (nztot) { 1037d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1038d0d4cfc2SHong Zhang PetscInt imark = -1; 1039d0d4cfc2SHong Zhang if (v) { 1040d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1041d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1042d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1043d0d4cfc2SHong Zhang else break; 1044d0d4cfc2SHong Zhang } 1045d0d4cfc2SHong Zhang imark = i; 1046d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1047d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1048d0d4cfc2SHong Zhang } 1049d0d4cfc2SHong Zhang if (idx) { 1050d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1051d0d4cfc2SHong Zhang if (imark > -1) { 1052d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1053d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1054d0d4cfc2SHong Zhang } 1055d0d4cfc2SHong Zhang } else { 1056d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1057d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1058d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1059d0d4cfc2SHong Zhang else break; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang imark = i; 1062d0d4cfc2SHong Zhang } 1063d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1064d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1065d0d4cfc2SHong Zhang } 1066d0d4cfc2SHong Zhang } else { 1067d0d4cfc2SHong Zhang if (idx) *idx = 0; 1068d0d4cfc2SHong Zhang if (v) *v = 0; 1069d0d4cfc2SHong Zhang } 1070d0d4cfc2SHong Zhang } 1071d0d4cfc2SHong Zhang *nz = nztot; 1072d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1073d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1074a30f8f8cSSatish Balay PetscFunctionReturn(0); 1075a30f8f8cSSatish Balay } 1076a30f8f8cSSatish Balay 10774a2ae208SSatish Balay #undef __FUNCT__ 10784a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10791302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1080a30f8f8cSSatish Balay { 1081a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1082a30f8f8cSSatish Balay 1083a30f8f8cSSatish Balay PetscFunctionBegin; 1084abc0a331SBarry Smith if (!baij->getrowactive) { 1085*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1086a30f8f8cSSatish Balay } 1087a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1088a30f8f8cSSatish Balay PetscFunctionReturn(0); 1089a30f8f8cSSatish Balay } 1090a30f8f8cSSatish Balay 10914a2ae208SSatish Balay #undef __FUNCT__ 1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1093d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1094d0d4cfc2SHong Zhang { 1095d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1096d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1097d0d4cfc2SHong Zhang 1098d0d4cfc2SHong Zhang PetscFunctionBegin; 1099d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1100d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1101d0d4cfc2SHong Zhang } 1102d0d4cfc2SHong Zhang #undef __FUNCT__ 1103d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1104d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1105d0d4cfc2SHong Zhang { 1106d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1107d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1108d0d4cfc2SHong Zhang 1109d0d4cfc2SHong Zhang PetscFunctionBegin; 1110d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1111d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1112d0d4cfc2SHong Zhang } 1113d0d4cfc2SHong Zhang 1114d0d4cfc2SHong Zhang #undef __FUNCT__ 111599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 111699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 111799cafbc1SBarry Smith { 111899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111999cafbc1SBarry Smith PetscErrorCode ierr; 112099cafbc1SBarry Smith 112199cafbc1SBarry Smith PetscFunctionBegin; 112299cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 112399cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 112499cafbc1SBarry Smith PetscFunctionReturn(0); 112599cafbc1SBarry Smith } 112699cafbc1SBarry Smith 112799cafbc1SBarry Smith #undef __FUNCT__ 112899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 113099cafbc1SBarry Smith { 113199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 113299cafbc1SBarry Smith PetscErrorCode ierr; 113399cafbc1SBarry Smith 113499cafbc1SBarry Smith PetscFunctionBegin; 113599cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 113699cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 113799cafbc1SBarry Smith PetscFunctionReturn(0); 113899cafbc1SBarry Smith } 113999cafbc1SBarry Smith 114099cafbc1SBarry Smith #undef __FUNCT__ 11414a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1142dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1143a30f8f8cSSatish Balay { 1144a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1145dfbe8321SBarry Smith PetscErrorCode ierr; 1146a30f8f8cSSatish Balay 1147a30f8f8cSSatish Balay PetscFunctionBegin; 1148a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1149a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1150a30f8f8cSSatish Balay PetscFunctionReturn(0); 1151a30f8f8cSSatish Balay } 1152a30f8f8cSSatish Balay 11534a2ae208SSatish Balay #undef __FUNCT__ 11544a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1155dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1156a30f8f8cSSatish Balay { 1157a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1158a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1159dfbe8321SBarry Smith PetscErrorCode ierr; 1160a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1161a30f8f8cSSatish Balay 1162a30f8f8cSSatish Balay PetscFunctionBegin; 1163d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1164a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1165a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1166a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1167a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1168a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1169a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1170a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1171a30f8f8cSSatish Balay info->nz_used = isend[0]; 1172a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1173a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1174a30f8f8cSSatish Balay info->memory = isend[3]; 1175a30f8f8cSSatish Balay info->mallocs = isend[4]; 1176a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11777adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1178a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1179a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1180a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1181a30f8f8cSSatish Balay info->memory = irecv[3]; 1182a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1183a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11847adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1185a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1186a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1187a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1188a30f8f8cSSatish Balay info->memory = irecv[3]; 1189a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1190a30f8f8cSSatish Balay } else { 1191*e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1192a30f8f8cSSatish Balay } 1193a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1194a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1195a30f8f8cSSatish Balay info->factor_mallocs = 0; 1196a30f8f8cSSatish Balay PetscFunctionReturn(0); 1197a30f8f8cSSatish Balay } 1198a30f8f8cSSatish Balay 11994a2ae208SSatish Balay #undef __FUNCT__ 12004a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 12014e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1202a30f8f8cSSatish Balay { 1203a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1204d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1205dfbe8321SBarry Smith PetscErrorCode ierr; 1206a30f8f8cSSatish Balay 1207a30f8f8cSSatish Balay PetscFunctionBegin; 1208e98b92d7SKris Buschelman switch (op) { 1209512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1210e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 121128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1212a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1213e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12144e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12154e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1216e98b92d7SKris Buschelman break; 1217e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12184e0d8c25SBarry Smith a->roworiented = flg; 12194e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12204e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1221e98b92d7SKris Buschelman break; 12224e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1223290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1224e98b92d7SKris Buschelman break; 1225e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12264e0d8c25SBarry Smith a->donotstash = flg; 1227e98b92d7SKris Buschelman break; 1228e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12294e0d8c25SBarry Smith a->ht_flag = flg; 1230e98b92d7SKris Buschelman break; 12319a4540c5SBarry Smith case MAT_HERMITIAN: 1232*e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1233eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1234547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1235eeffb40dSHong Zhang break; 123677e54ba9SKris Buschelman case MAT_SYMMETRIC: 1237eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1238eeffb40dSHong Zhang break; 123977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1240eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1241eeffb40dSHong Zhang break; 12429a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1243*e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1244290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124577e54ba9SKris Buschelman break; 1246d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12474e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1248d0d4cfc2SHong Zhang break; 1249d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12504e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1251d0d4cfc2SHong Zhang break; 1252d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12534e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1254d0d4cfc2SHong Zhang break; 1255e98b92d7SKris Buschelman default: 1256*e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1257a30f8f8cSSatish Balay } 1258a30f8f8cSSatish Balay PetscFunctionReturn(0); 1259a30f8f8cSSatish Balay } 1260a30f8f8cSSatish Balay 12614a2ae208SSatish Balay #undef __FUNCT__ 12628115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1263fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1264a30f8f8cSSatish Balay { 1265dfbe8321SBarry Smith PetscErrorCode ierr; 1266a30f8f8cSSatish Balay PetscFunctionBegin; 1267815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1268999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1269fc4dec0aSBarry Smith } 12708115998fSBarry Smith PetscFunctionReturn(0); 1271a30f8f8cSSatish Balay } 1272a30f8f8cSSatish Balay 12734a2ae208SSatish Balay #undef __FUNCT__ 12744a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1275dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1276a30f8f8cSSatish Balay { 1277a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1278a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1279dfbe8321SBarry Smith PetscErrorCode ierr; 12805e90f9d9SHong Zhang PetscInt nv,m,n; 1281b3bf805bSHong Zhang PetscTruth flg; 1282a30f8f8cSSatish Balay 1283a30f8f8cSSatish Balay PetscFunctionBegin; 1284a30f8f8cSSatish Balay if (ll != rr){ 1285b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1286b3bf805bSHong Zhang if (!flg) 1287*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1288a30f8f8cSSatish Balay } 1289b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1290b3bf805bSHong Zhang 12915e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1292*e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1293b3bf805bSHong Zhang 12945e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1295*e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12965e90f9d9SHong Zhang 1297ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12985e90f9d9SHong Zhang 12995e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1300a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13015e90f9d9SHong Zhang 13025e90f9d9SHong Zhang /* scale the diagonal part */ 1303a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1304a30f8f8cSSatish Balay 13055e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1306ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1308a30f8f8cSSatish Balay PetscFunctionReturn(0); 1309a30f8f8cSSatish Balay } 1310a30f8f8cSSatish Balay 13114a2ae208SSatish Balay #undef __FUNCT__ 13124a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1313dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1314a30f8f8cSSatish Balay { 1315f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1316dfbe8321SBarry Smith PetscErrorCode ierr; 1317a30f8f8cSSatish Balay 1318a30f8f8cSSatish Balay PetscFunctionBegin; 1319a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1320a30f8f8cSSatish Balay PetscFunctionReturn(0); 1321a30f8f8cSSatish Balay } 1322a30f8f8cSSatish Balay 13236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1324a30f8f8cSSatish Balay 13254a2ae208SSatish Balay #undef __FUNCT__ 13264a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1327dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1328a30f8f8cSSatish Balay { 1329a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1330a30f8f8cSSatish Balay Mat a,b,c,d; 1331a30f8f8cSSatish Balay PetscTruth flg; 1332dfbe8321SBarry Smith PetscErrorCode ierr; 1333a30f8f8cSSatish Balay 1334a30f8f8cSSatish Balay PetscFunctionBegin; 1335a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1336a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1337a30f8f8cSSatish Balay 1338a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1339abc0a331SBarry Smith if (flg) { 1340a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay } 13427adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1343a30f8f8cSSatish Balay PetscFunctionReturn(0); 1344a30f8f8cSSatish Balay } 1345a30f8f8cSSatish Balay 13464a2ae208SSatish Balay #undef __FUNCT__ 13473c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13483c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13493c896bc6SHong Zhang { 13503c896bc6SHong Zhang PetscErrorCode ierr; 13513c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13523c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13533c896bc6SHong Zhang 13543c896bc6SHong Zhang PetscFunctionBegin; 13553c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13563c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1357d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13583c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1359d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13603c896bc6SHong Zhang } else { 13613c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13623c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13633c896bc6SHong Zhang } 13643c896bc6SHong Zhang PetscFunctionReturn(0); 13653c896bc6SHong Zhang } 13663c896bc6SHong Zhang 13673c896bc6SHong Zhang #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1369dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1370273d9f13SBarry Smith { 1371dfbe8321SBarry Smith PetscErrorCode ierr; 1372273d9f13SBarry Smith 1373273d9f13SBarry Smith PetscFunctionBegin; 1374db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1375273d9f13SBarry Smith PetscFunctionReturn(0); 1376273d9f13SBarry Smith } 1377a5e6ed63SBarry Smith 13784fe895cdSHong Zhang #undef __FUNCT__ 13794fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13804fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13814fe895cdSHong Zhang { 13824fe895cdSHong Zhang PetscErrorCode ierr; 13834fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13844fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13854fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13864fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13874fe895cdSHong Zhang 13884fe895cdSHong Zhang PetscFunctionBegin; 13894fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13904fe895cdSHong Zhang PetscScalar alpha = a; 13914fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13924fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13930805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13944fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13954fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13964fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13970805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13984fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13994fe895cdSHong Zhang } else { 1400d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14014fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1402d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14034fe895cdSHong Zhang } 14044fe895cdSHong Zhang PetscFunctionReturn(0); 14054fe895cdSHong Zhang } 14064fe895cdSHong Zhang 1407a5e6ed63SBarry Smith #undef __FUNCT__ 14086363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14096363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14106363de48SJed Brown { 14116363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14126363de48SJed Brown PetscInt rbs,cbs; 14136363de48SJed Brown PetscErrorCode ierr; 14146363de48SJed Brown 14156363de48SJed Brown PetscFunctionBegin; 14166363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14176363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14186363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14196363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1420*e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 1421*e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14226363de48SJed Brown PetscFunctionReturn(0); 14236363de48SJed Brown } 14246363de48SJed Brown 14256363de48SJed Brown #undef __FUNCT__ 1426a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14271302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1428a5e6ed63SBarry Smith { 14296849ba73SBarry Smith PetscErrorCode ierr; 14301302d50aSBarry Smith PetscInt i; 1431a5e6ed63SBarry Smith PetscTruth flg; 1432a5e6ed63SBarry Smith 14336849ba73SBarry Smith PetscFunctionBegin; 1434a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1435a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1436a5e6ed63SBarry Smith if (!flg) { 1437*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1438a5e6ed63SBarry Smith } 1439a5e6ed63SBarry Smith } 1440a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1441a5e6ed63SBarry Smith PetscFunctionReturn(0); 1442a5e6ed63SBarry Smith } 1443a5e6ed63SBarry Smith 1444a5e6ed63SBarry Smith 1445a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1446a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1447a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1448a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1449a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1450a9d4b620SHong Zhang MatMult_MPISBAIJ, 145197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1452431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1453431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 145797304618SKris Buschelman /*10*/ 0, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 146041f059aeSBarry Smith MatSOR_MPISBAIJ, 1461a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 146297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1463a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1464a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1465a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1466a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1468a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1469a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1470a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1471d519adbfSMatthew Knepley /*24*/ 0, 1472a30f8f8cSSatish Balay 0, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1477b5df2d14SHong Zhang 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1487a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1488d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1489a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14903c896bc6SHong Zhang MatCopy_MPISBAIJ, 1491d519adbfSMatthew Knepley /*44*/ 0, 1492a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 14966363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501d519adbfSMatthew Knepley /*54*/ 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1506d519adbfSMatthew Knepley /*59*/ 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509357abbc8SBarry Smith 0, 151024d5174aSHong Zhang 0, 1511d519adbfSMatthew Knepley /*64*/ 0, 151224d5174aSHong Zhang 0, 151324d5174aSHong Zhang 0, 151424d5174aSHong Zhang 0, 151524d5174aSHong Zhang 0, 1516d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151724d5174aSHong Zhang 0, 151897304618SKris Buschelman 0, 151997304618SKris Buschelman 0, 152097304618SKris Buschelman 0, 1521d519adbfSMatthew Knepley /*74*/ 0, 152297304618SKris Buschelman 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 1526d519adbfSMatthew Knepley /*79*/ 0, 152797304618SKris Buschelman 0, 152897304618SKris Buschelman 0, 152997304618SKris Buschelman 0, 1530865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1531d519adbfSMatthew Knepley /*84*/ 0, 1532865e5f61SKris Buschelman 0, 1533865e5f61SKris Buschelman 0, 1534865e5f61SKris Buschelman 0, 1535865e5f61SKris Buschelman 0, 1536d519adbfSMatthew Knepley /*89*/ 0, 1537865e5f61SKris Buschelman 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 1540865e5f61SKris Buschelman 0, 1541d519adbfSMatthew Knepley /*94*/ 0, 1542865e5f61SKris Buschelman 0, 1543865e5f61SKris Buschelman 0, 154499cafbc1SBarry Smith 0, 154599cafbc1SBarry Smith 0, 1546d519adbfSMatthew Knepley /*99*/ 0, 154799cafbc1SBarry Smith 0, 154899cafbc1SBarry Smith 0, 154999cafbc1SBarry Smith 0, 155099cafbc1SBarry Smith 0, 1551d519adbfSMatthew Knepley /*104*/0, 155299cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1553d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1554d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1555d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 155699cafbc1SBarry Smith }; 1557a30f8f8cSSatish Balay 1558a30f8f8cSSatish Balay 1559a30f8f8cSSatish Balay EXTERN_C_BEGIN 15604a2ae208SSatish Balay #undef __FUNCT__ 15614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1562be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1563a30f8f8cSSatish Balay { 1564a30f8f8cSSatish Balay PetscFunctionBegin; 1565a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1566a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1567a30f8f8cSSatish Balay PetscFunctionReturn(0); 1568a30f8f8cSSatish Balay } 1569a30f8f8cSSatish Balay EXTERN_C_END 1570a30f8f8cSSatish Balay 1571273d9f13SBarry Smith EXTERN_C_BEGIN 15724a2ae208SSatish Balay #undef __FUNCT__ 1573a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1574be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1575a23d5eceSKris Buschelman { 1576a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1577dfbe8321SBarry Smith PetscErrorCode ierr; 1578db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1579a23d5eceSKris Buschelman 1580a23d5eceSKris Buschelman PetscFunctionBegin; 1581db4efbfdSBarry Smith if (bs < 0){ 15827adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1583db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15848c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1585db4efbfdSBarry Smith bs = PetscAbs(bs); 1586db4efbfdSBarry Smith } 1587db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 1588*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1589db4efbfdSBarry Smith } 1590db4efbfdSBarry Smith bs = newbs; 1591a23d5eceSKris Buschelman 1592a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1593a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1594*e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1595*e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1596899cda47SBarry Smith 1597d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 159826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1600899cda47SBarry Smith 1601a23d5eceSKris Buschelman if (d_nnz) { 1602d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1603*e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1604a23d5eceSKris Buschelman } 1605a23d5eceSKris Buschelman } 1606a23d5eceSKris Buschelman if (o_nnz) { 1607d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1608*e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1609a23d5eceSKris Buschelman } 1610a23d5eceSKris Buschelman } 1611a23d5eceSKris Buschelman 1612a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1613d0f46423SBarry Smith mbs = B->rmap->n/bs; 1614d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1615d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1616*e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman 1619d0f46423SBarry Smith B->rmap->bs = bs; 1620a23d5eceSKris Buschelman b->bs2 = bs*bs; 1621a23d5eceSKris Buschelman b->mbs = mbs; 1622a23d5eceSKris Buschelman b->nbs = mbs; 1623a23d5eceSKris Buschelman b->Mbs = Mbs; 1624a23d5eceSKris Buschelman b->Nbs = Mbs; 1625a23d5eceSKris Buschelman 1626a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1627d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1628a23d5eceSKris Buschelman } 1629d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1630d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1631a23d5eceSKris Buschelman 1632d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1633d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1634a23d5eceSKris Buschelman 1635526dfc15SBarry Smith if (!B->preallocated) { 1636f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1637d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16389c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 163952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1640f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1641d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16424aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 164352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 164415bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1645526dfc15SBarry Smith } 1646a23d5eceSKris Buschelman 1647526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1648526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1649526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1650a23d5eceSKris Buschelman PetscFunctionReturn(0); 1651a23d5eceSKris Buschelman } 1652a23d5eceSKris Buschelman EXTERN_C_END 1653a23d5eceSKris Buschelman 16545c9eb25fSBarry Smith EXTERN_C_BEGIN 1655611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1656611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*); 1657611f576cSBarry Smith #endif 1658611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16595c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1660611f576cSBarry Smith #endif 1661b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1662b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1663b5e56a35SBarry Smith #endif 16645c9eb25fSBarry Smith EXTERN_C_END 16655c9eb25fSBarry Smith 16660bad9183SKris Buschelman /*MC 1667fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16680bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16690bad9183SKris Buschelman 16700bad9183SKris Buschelman Options Database Keys: 16710bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16720bad9183SKris Buschelman 16730bad9183SKris Buschelman Level: beginner 16740bad9183SKris Buschelman 16750bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16760bad9183SKris Buschelman M*/ 16770bad9183SKris Buschelman 1678a23d5eceSKris Buschelman EXTERN_C_BEGIN 1679a23d5eceSKris Buschelman #undef __FUNCT__ 16804a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1681be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1682b5df2d14SHong Zhang { 1683b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1684dfbe8321SBarry Smith PetscErrorCode ierr; 1685b5df2d14SHong Zhang PetscTruth flg; 1686b5df2d14SHong Zhang 1687b5df2d14SHong Zhang PetscFunctionBegin; 1688b5df2d14SHong Zhang 168938f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1690b0a32e0cSBarry Smith B->data = (void*)b; 1691b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1692b5df2d14SHong Zhang 1693b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1694b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1695b5df2d14SHong Zhang B->mapping = 0; 1696b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1697b5df2d14SHong Zhang 1698b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16997adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 17007adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1701b5df2d14SHong Zhang 1702b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1703899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1704b5df2d14SHong Zhang 1705b5df2d14SHong Zhang /* build cache for off array entries formed */ 17067adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1707b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1708b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1709b5df2d14SHong Zhang b->garray = PETSC_NULL; 1710b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang /* stuff used in block assembly */ 1713b5df2d14SHong Zhang b->barray = 0; 1714b5df2d14SHong Zhang 1715b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1716b5df2d14SHong Zhang b->lvec = 0; 1717b5df2d14SHong Zhang b->Mvctx = 0; 171840781036SHong Zhang b->slvec0 = 0; 171940781036SHong Zhang b->slvec0b = 0; 172040781036SHong Zhang b->slvec1 = 0; 172140781036SHong Zhang b->slvec1a = 0; 172240781036SHong Zhang b->slvec1b = 0; 172340781036SHong Zhang b->sMvctx = 0; 1724b5df2d14SHong Zhang 1725b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1726b5df2d14SHong Zhang b->rowindices = 0; 1727b5df2d14SHong Zhang b->rowvalues = 0; 1728b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang /* hash table stuff */ 1731b5df2d14SHong Zhang b->ht = 0; 1732b5df2d14SHong Zhang b->hd = 0; 1733b5df2d14SHong Zhang b->ht_size = 0; 1734b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1735b5df2d14SHong Zhang b->ht_fact = 0; 1736b5df2d14SHong Zhang b->ht_total_ct = 0; 1737b5df2d14SHong Zhang b->ht_insert_ct = 0; 1738b5df2d14SHong Zhang 173959ffdab8SBarry Smith b->in_loc = 0; 174059ffdab8SBarry Smith b->v_loc = 0; 174159ffdab8SBarry Smith b->n_loc = 0; 17427adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17438c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1744b5df2d14SHong Zhang if (flg) { 1745f6275e2eSBarry Smith PetscReal fact = 1.39; 17464e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17478c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1748b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1749b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17501e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1751b5df2d14SHong Zhang } 17528c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17538c07d4e3SBarry Smith 1754b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1755ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1756b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1757b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1758b5e56a35SBarry Smith #endif 1759611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1760ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 17615c9eb25fSBarry Smith "MatGetFactor_mpisbaij_mumps", 17625c9eb25fSBarry Smith MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr); 1763611f576cSBarry Smith #endif 1764611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1765ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 17665c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17675c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1768611f576cSBarry Smith #endif 1769b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1770b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1771b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1772b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1773b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1774b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1775b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1776b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1777b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1778a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1779a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1780a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 178223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 178517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1786b5df2d14SHong Zhang PetscFunctionReturn(0); 1787b5df2d14SHong Zhang } 1788273d9f13SBarry Smith EXTERN_C_END 1789b5df2d14SHong Zhang 1790209238afSKris Buschelman /*MC 1791002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1792209238afSKris Buschelman 1793209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1794209238afSKris Buschelman and MATMPISBAIJ otherwise. 1795209238afSKris Buschelman 1796209238afSKris Buschelman Options Database Keys: 1797209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1798209238afSKris Buschelman 1799209238afSKris Buschelman Level: beginner 1800209238afSKris Buschelman 1801209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1802209238afSKris Buschelman M*/ 1803209238afSKris Buschelman 1804209238afSKris Buschelman EXTERN_C_BEGIN 1805209238afSKris Buschelman #undef __FUNCT__ 1806209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1807be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1808dfbe8321SBarry Smith { 18096849ba73SBarry Smith PetscErrorCode ierr; 18101302d50aSBarry Smith PetscMPIInt size; 1811209238afSKris Buschelman 1812209238afSKris Buschelman PetscFunctionBegin; 18137adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1814209238afSKris Buschelman if (size == 1) { 1815209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1816209238afSKris Buschelman } else { 1817209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1818209238afSKris Buschelman } 1819209238afSKris Buschelman PetscFunctionReturn(0); 1820209238afSKris Buschelman } 1821209238afSKris Buschelman EXTERN_C_END 1822209238afSKris Buschelman 18234a2ae208SSatish Balay #undef __FUNCT__ 18244a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1825b5df2d14SHong Zhang /*@C 1826b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1827b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1828b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1829b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1830b5df2d14SHong Zhang 1831b5df2d14SHong Zhang Collective on Mat 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang Input Parameters: 1834b5df2d14SHong Zhang + A - the matrix 1835b5df2d14SHong Zhang . bs - size of blockk 1836b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1837b5df2d14SHong Zhang submatrix (same for all local rows) 1838b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18396d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18406d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18416d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1842b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1843b5df2d14SHong Zhang submatrix (same for all local rows). 1844b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1845b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1846b5df2d14SHong Zhang each block row) or PETSC_NULL. 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang Options Database Keys: 1850b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1851b5df2d14SHong Zhang block calculations (much slower) 1852b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1853b5df2d14SHong Zhang 1854b5df2d14SHong Zhang Notes: 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1857b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1858b5df2d14SHong Zhang 185949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 186049a6f317SBarry Smith 1861b5df2d14SHong Zhang Storage Information: 1862b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1863b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1864b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1865b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1868b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1869b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1870b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1871b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1872b5df2d14SHong Zhang 1873aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1874aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1875aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1876aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1877aa95bbe8SBarry Smith 1878b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1879b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1880b5df2d14SHong Zhang 1881b5df2d14SHong Zhang .vb 1882b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1883b5df2d14SHong Zhang ------------------- 1884b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1885b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1886b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1887b5df2d14SHong Zhang ------------------- 1888b5df2d14SHong Zhang .ve 1889b5df2d14SHong Zhang 1890b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1891b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18926d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18936d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1894b5df2d14SHong Zhang 18956d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18966d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1897b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1898b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1899b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1900b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1901b5df2d14SHong Zhang matrices. 1902b5df2d14SHong Zhang 1903b5df2d14SHong Zhang Level: intermediate 1904b5df2d14SHong Zhang 1905b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1906b5df2d14SHong Zhang 1907b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1908b5df2d14SHong Zhang @*/ 1909be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1910b5df2d14SHong Zhang { 19111302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1912b5df2d14SHong Zhang 1913b5df2d14SHong Zhang PetscFunctionBegin; 1914a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1915a23d5eceSKris Buschelman if (f) { 1916a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1917b5df2d14SHong Zhang } 1918b5df2d14SHong Zhang PetscFunctionReturn(0); 1919b5df2d14SHong Zhang } 1920b5df2d14SHong Zhang 19214a2ae208SSatish Balay #undef __FUNCT__ 19224a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1923a30f8f8cSSatish Balay /*@C 1924a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1925a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1926a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1927a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1928a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1929a30f8f8cSSatish Balay 1930a30f8f8cSSatish Balay Collective on MPI_Comm 1931a30f8f8cSSatish Balay 1932a30f8f8cSSatish Balay Input Parameters: 1933a30f8f8cSSatish Balay + comm - MPI communicator 1934a30f8f8cSSatish Balay . bs - size of blockk 1935a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1936a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1937a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1938a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1939a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1940a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1941a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1942a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1943a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1944a30f8f8cSSatish Balay submatrix (same for all local rows) 1945a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19466d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19476d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19486d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1949a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1950a30f8f8cSSatish Balay submatrix (same for all local rows). 1951a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1952a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1953a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay Output Parameter: 1956a30f8f8cSSatish Balay . A - the matrix 1957a30f8f8cSSatish Balay 1958a30f8f8cSSatish Balay Options Database Keys: 1959a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1960a30f8f8cSSatish Balay block calculations (much slower) 1961a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1962a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1963a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1964a30f8f8cSSatish Balay 1965175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1966ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1967175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1968175b88e8SBarry Smith 1969a30f8f8cSSatish Balay Notes: 1970d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19716d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1972d1be2dadSMatthew Knepley 1973a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1974a30f8f8cSSatish Balay (possibly both). 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1977a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1978a30f8f8cSSatish Balay 197949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 198049a6f317SBarry Smith 1981a30f8f8cSSatish Balay Storage Information: 1982a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1983a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1984a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1985a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1988a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1989a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1990a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1991a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1992a30f8f8cSSatish Balay 1993a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1994a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1995a30f8f8cSSatish Balay 1996a30f8f8cSSatish Balay .vb 1997a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1998a30f8f8cSSatish Balay ------------------- 1999a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2000a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2001a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2002a30f8f8cSSatish Balay ------------------- 2003a30f8f8cSSatish Balay .ve 2004a30f8f8cSSatish Balay 2005a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2006a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20076d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20086d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2009a30f8f8cSSatish Balay 20106d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20116d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2012a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2013a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2014a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2015a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2016a30f8f8cSSatish Balay matrices. 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay Level: intermediate 2019a30f8f8cSSatish Balay 2020a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2021a30f8f8cSSatish Balay 2022a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2023a30f8f8cSSatish Balay @*/ 2024a30f8f8cSSatish Balay 2025be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2026a30f8f8cSSatish Balay { 20276849ba73SBarry Smith PetscErrorCode ierr; 20281302d50aSBarry Smith PetscMPIInt size; 2029a30f8f8cSSatish Balay 2030a30f8f8cSSatish Balay PetscFunctionBegin; 2031f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2032f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2033273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2034273d9f13SBarry Smith if (size > 1) { 2035b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2036b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2037273d9f13SBarry Smith } else { 2038273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2039273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2040273d9f13SBarry Smith } 2041a30f8f8cSSatish Balay PetscFunctionReturn(0); 2042a30f8f8cSSatish Balay } 2043a30f8f8cSSatish Balay 2044a30f8f8cSSatish Balay 20454a2ae208SSatish Balay #undef __FUNCT__ 20464a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20476849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2048a30f8f8cSSatish Balay { 2049a30f8f8cSSatish Balay Mat mat; 2050a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2051dfbe8321SBarry Smith PetscErrorCode ierr; 2052d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2053387bc808SHong Zhang PetscScalar *array; 2054a30f8f8cSSatish Balay 2055a30f8f8cSSatish Balay PetscFunctionBegin; 2056a30f8f8cSSatish Balay *newmat = 0; 20577adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2058d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20597adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20601d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 206126283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 206226283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2063e1b6402fSHong Zhang 2064d5f3da31SBarry Smith mat->factortype = matin->factortype; 2065273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20677fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20687fff6886SHong Zhang 2069b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2070a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2071a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2072a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2073a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2074a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2075a30f8f8cSSatish Balay 2076899cda47SBarry Smith 2077a30f8f8cSSatish Balay a->size = oldmat->size; 2078a30f8f8cSSatish Balay a->rank = oldmat->rank; 2079a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2080a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2081a30f8f8cSSatish Balay a->rowindices = 0; 2082a30f8f8cSSatish Balay a->rowvalues = 0; 2083a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2084a30f8f8cSSatish Balay a->barray = 0; 2085899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2086899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2087899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2088899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2089a30f8f8cSSatish Balay 2090a30f8f8cSSatish Balay /* hash table stuff */ 2091a30f8f8cSSatish Balay a->ht = 0; 2092a30f8f8cSSatish Balay a->hd = 0; 2093a30f8f8cSSatish Balay a->ht_size = 0; 2094a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2095a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2096a30f8f8cSSatish Balay a->ht_total_ct = 0; 2097a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2098a30f8f8cSSatish Balay 2099899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2100a30f8f8cSSatish Balay if (oldmat->colmap) { 2101a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2102a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay #else 21041302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21061302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2107a30f8f8cSSatish Balay #endif 2108a30f8f8cSSatish Balay } else a->colmap = 0; 2109387bc808SHong Zhang 2110a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21111302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 211252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21131302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2114a30f8f8cSSatish Balay } else a->garray = 0; 2115a30f8f8cSSatish Balay 2116533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2117a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2119a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 212182327fa8SHong Zhang 212282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 212352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2126387bc808SHong Zhang 2127387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21281ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2129387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2130387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21311ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21321ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2133387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21341ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 213752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 213852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 213952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2140387bc808SHong Zhang 2141387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2142387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2143387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 214452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214582327fa8SHong Zhang 2146a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2148a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 214952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21507adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay *newmat = mat; 2152a30f8f8cSSatish Balay PetscFunctionReturn(0); 2153a30f8f8cSSatish Balay } 2154a30f8f8cSSatish Balay 21554a2ae208SSatish Balay #undef __FUNCT__ 21564a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2157a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2158a30f8f8cSSatish Balay { 2159a30f8f8cSSatish Balay Mat A; 21606849ba73SBarry Smith PetscErrorCode ierr; 216113f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 216287828ca2SBarry Smith PetscScalar *vals,*buf; 2163a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2164a30f8f8cSSatish Balay MPI_Status status; 2165e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 216613f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21672fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21681302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21691302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21701302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 217113f74950SBarry Smith int fd; 2172a30f8f8cSSatish Balay 2173a30f8f8cSSatish Balay PetscFunctionBegin; 217477925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21758c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21768c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay if (!rank) { 2181b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2183*e32f2f54SBarry Smith if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2184a30f8f8cSSatish Balay if (header[3] < 0) { 2185*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2186a30f8f8cSSatish Balay } 2187a30f8f8cSSatish Balay } 2188a30f8f8cSSatish Balay 2189a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2191a30f8f8cSSatish Balay 2192*e32f2f54SBarry Smith if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 2193a30f8f8cSSatish Balay 2194a30f8f8cSSatish Balay /* 2195a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2196a30f8f8cSSatish Balay divisible by the blocksize 2197a30f8f8cSSatish Balay */ 2198a30f8f8cSSatish Balay Mbs = M/bs; 2199a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2200a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2201a30f8f8cSSatish Balay else Mbs++; 2202a30f8f8cSSatish Balay if (extra_rows &&!rank) { 22031e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2204a30f8f8cSSatish Balay } 2205a30f8f8cSSatish Balay 2206a30f8f8cSSatish Balay /* determine ownership of all rows */ 2207a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2208a30f8f8cSSatish Balay m = mbs*bs; 220974ed9c26SBarry Smith ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 2210e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2211e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay rowners[0] = 0; 2213a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2214a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2215a30f8f8cSSatish Balay rstart = rowners[rank]; 2216a30f8f8cSSatish Balay rend = rowners[rank+1]; 2217a30f8f8cSSatish Balay 2218a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22192fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay if (!rank) { 22211302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2224a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2226a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay } else { 2229a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay } 2231a30f8f8cSSatish Balay 22320222edb1SHong Zhang if (!rank) { /* procs[0] */ 2233a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22341302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22351302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2236a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2237a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2238a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2239a30f8f8cSSatish Balay } 2240a30f8f8cSSatish Balay } 2241a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2242a30f8f8cSSatish Balay 2243a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2244a30f8f8cSSatish Balay maxnz = 0; 2245a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2246a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2247a30f8f8cSSatish Balay } 22481302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay 2250a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2251a30f8f8cSSatish Balay nz = procsnz[0]; 22521302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2253a30f8f8cSSatish Balay mycols = ibuf; 2254a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2255a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2257a30f8f8cSSatish Balay 2258a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2259a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2260a30f8f8cSSatish Balay nz = procsnz[i]; 2261a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2262a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay } 2264a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2265a30f8f8cSSatish Balay if (size != 1) { 2266a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2267a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2269a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay } 2271a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22720222edb1SHong Zhang } else { /* procs[i], i>0 */ 2273a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2274a30f8f8cSSatish Balay nz = 0; 2275a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2276a30f8f8cSSatish Balay nz += locrowlens[i]; 2277a30f8f8cSSatish Balay } 22781302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2279a30f8f8cSSatish Balay mycols = ibuf; 2280a30f8f8cSSatish Balay /* receive message of column indices*/ 2281a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2282a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 2283*e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2284a30f8f8cSSatish Balay } 2285a30f8f8cSSatish Balay 2286a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 228774ed9c26SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 228874ed9c26SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 228974ed9c26SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 229074ed9c26SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 229174ed9c26SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 229274ed9c26SBarry Smith rowcount = 0; 229374ed9c26SBarry Smith nzcount = 0; 2294a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2295a30f8f8cSSatish Balay dcount = 0; 2296a30f8f8cSSatish Balay odcount = 0; 2297a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2298a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2299a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23000222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2301a30f8f8cSSatish Balay if (!mask[tmp]) { 2302a30f8f8cSSatish Balay mask[tmp] = 1; 23030222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23040222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2305a30f8f8cSSatish Balay } 2306a30f8f8cSSatish Balay } 2307a30f8f8cSSatish Balay rowcount++; 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay 23100222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23110222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2314a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2315a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2316a30f8f8cSSatish Balay } 2317a30f8f8cSSatish Balay 2318a30f8f8cSSatish Balay /* create our matrix */ 2319f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2320f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 232122191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232217fa8088SHong Zhang ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 232322191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2324a30f8f8cSSatish Balay 2325a30f8f8cSSatish Balay if (!rank) { 232687828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2327a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2328a30f8f8cSSatish Balay nz = procsnz[0]; 2329a30f8f8cSSatish Balay vals = buf; 2330a30f8f8cSSatish Balay mycols = ibuf; 2331a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2332a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2333a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay /* insert into matrix */ 2336a30f8f8cSSatish Balay jj = rstart*bs; 2337a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23387e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2339a30f8f8cSSatish Balay mycols += locrowlens[i]; 2340a30f8f8cSSatish Balay vals += locrowlens[i]; 2341a30f8f8cSSatish Balay jj++; 2342a30f8f8cSSatish Balay } 23437e06b45fSHong Zhang 2344a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2345a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2346a30f8f8cSSatish Balay nz = procsnz[i]; 2347a30f8f8cSSatish Balay vals = buf; 2348a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23497adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2350a30f8f8cSSatish Balay } 2351a30f8f8cSSatish Balay /* the last proc */ 2352a30f8f8cSSatish Balay if (size != 1){ 2353a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2354a30f8f8cSSatish Balay vals = buf; 2355a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2356a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23577adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay } 2359a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23607e06b45fSHong Zhang 2361a30f8f8cSSatish Balay } else { 2362a30f8f8cSSatish Balay /* receive numeric values */ 236387828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2364a30f8f8cSSatish Balay 2365a30f8f8cSSatish Balay /* receive message of values*/ 2366a30f8f8cSSatish Balay vals = buf; 2367a30f8f8cSSatish Balay mycols = ibuf; 23687adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2369a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2370*e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2371a30f8f8cSSatish Balay 2372a30f8f8cSSatish Balay /* insert into matrix */ 2373a30f8f8cSSatish Balay jj = rstart*bs; 2374a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2375a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2376a30f8f8cSSatish Balay mycols += locrowlens[i]; 2377a30f8f8cSSatish Balay vals += locrowlens[i]; 2378a30f8f8cSSatish Balay jj++; 2379a30f8f8cSSatish Balay } 2380a30f8f8cSSatish Balay } 23817e06b45fSHong Zhang 2382a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2383a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 238574ed9c26SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 238674ed9c26SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 238774ed9c26SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 2388a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2389a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239022191285SKris Buschelman *newmat = A; 2391a30f8f8cSSatish Balay PetscFunctionReturn(0); 2392a30f8f8cSSatish Balay } 2393a30f8f8cSSatish Balay 23944a2ae208SSatish Balay #undef __FUNCT__ 23954a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2396dcf5cc72SBarry Smith /*XXXXX@ 2397a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2398a30f8f8cSSatish Balay 2399a30f8f8cSSatish Balay Input Parameters: 2400a30f8f8cSSatish Balay . mat - the matrix 2401a30f8f8cSSatish Balay . fact - factor 2402a30f8f8cSSatish Balay 2403a30f8f8cSSatish Balay Collective on Mat 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay Level: advanced 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay Notes: 2408a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2409a30f8f8cSSatish Balay 2410a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay .seealso: MatSetOption() 2413dcf5cc72SBarry Smith @XXXXX*/ 2414dcf5cc72SBarry Smith 241524d5174aSHong Zhang 24164a2ae208SSatish Balay #undef __FUNCT__ 2417985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2418985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 241924d5174aSHong Zhang { 242024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2421f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2422ca54ac64SHong Zhang PetscReal atmp; 242387828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2424dfbe8321SBarry Smith PetscErrorCode ierr; 24251302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24261302d50aSBarry Smith PetscMPIInt rank,size; 24271302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 242887828ca2SBarry Smith PetscScalar *va; 24298a1c53f2SBarry Smith MatScalar *ba; 2430f4c0e9e4SHong Zhang MPI_Status stat; 243124d5174aSHong Zhang 243224d5174aSHong Zhang PetscFunctionBegin; 2433*e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2434985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24351ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2436f4c0e9e4SHong Zhang 24377adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24387adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2439f4c0e9e4SHong Zhang 2440d0f46423SBarry Smith bs = A->rmap->bs; 2441f4c0e9e4SHong Zhang mbs = a->mbs; 2442f4c0e9e4SHong Zhang Mbs = a->Mbs; 2443f4c0e9e4SHong Zhang ba = b->a; 2444f4c0e9e4SHong Zhang bi = b->i; 2445f4c0e9e4SHong Zhang bj = b->j; 2446f4c0e9e4SHong Zhang 2447f4c0e9e4SHong Zhang /* find ownerships */ 2448d0f46423SBarry Smith rowners_bs = A->rmap->range; 2449f4c0e9e4SHong Zhang 2450f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245182502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2452ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2453f4c0e9e4SHong Zhang 2454f4c0e9e4SHong Zhang /* row_max for B */ 2455b8475685SHong Zhang if (rank != size-1){ 2456f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2457f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2458f4c0e9e4SHong Zhang brow = bs*i; 2459f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2460f4c0e9e4SHong Zhang bcol = bs*(*bj); 2461f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2462ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2464f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2465f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2466ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2467ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2468f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2469f4c0e9e4SHong Zhang } 2470f4c0e9e4SHong Zhang } 2471f4c0e9e4SHong Zhang bj++; 2472f4c0e9e4SHong Zhang } 2473f4c0e9e4SHong Zhang } 2474f4c0e9e4SHong Zhang 2475f4c0e9e4SHong Zhang /* send values to its owners */ 2476f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2477f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2478ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24797adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2480ca54ac64SHong Zhang } 2481f4c0e9e4SHong Zhang } 2482f4c0e9e4SHong Zhang 2483f4c0e9e4SHong Zhang /* receive values */ 2484ca54ac64SHong Zhang if (rank){ 2485f4c0e9e4SHong Zhang rvalues = work; 2486ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2487f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24887adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2489f4c0e9e4SHong Zhang /* process values */ 2490f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2491ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2492f4c0e9e4SHong Zhang } 2493f4c0e9e4SHong Zhang } 2494ca54ac64SHong Zhang } 2495f4c0e9e4SHong Zhang 24961ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2497ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249824d5174aSHong Zhang PetscFunctionReturn(0); 249924d5174aSHong Zhang } 25002798e883SHong Zhang 25012798e883SHong Zhang #undef __FUNCT__ 250241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 250341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25042798e883SHong Zhang { 25052798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2506dfbe8321SBarry Smith PetscErrorCode ierr; 2507d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 2508fa22f6d0SBarry Smith PetscScalar *x,*b,*ptr,*from; 2509ffe4fb16SHong Zhang Vec bb1; 2510ffe4fb16SHong Zhang 2511ffe4fb16SHong Zhang PetscFunctionBegin; 2512*e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2513*e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2514ffe4fb16SHong Zhang 2515a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 251641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2517a2b30743SBarry Smith PetscFunctionReturn(0); 2518a2b30743SBarry Smith } 2519a2b30743SBarry Smith 2520ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2521ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 252241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2523ffe4fb16SHong Zhang its--; 2524ffe4fb16SHong Zhang } 2525ffe4fb16SHong Zhang 2526ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2527ffe4fb16SHong Zhang while (its--){ 2528ffe4fb16SHong Zhang 2529ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2530ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2531ffe4fb16SHong Zhang 2532ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25331ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25341ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25361ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang 2538efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang 2540ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25411ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25441ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2545ffe4fb16SHong Zhang 2546ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2547fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2548ffe4fb16SHong Zhang 2549ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25501ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25511ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2552ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2555ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang /* local diagonal sweep */ 255841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2559ffe4fb16SHong Zhang } 2560ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2561fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 256241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2563fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 256441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2565fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2566fa22f6d0SBarry Smith Vec xx1; 2567fa22f6d0SBarry Smith PetscTruth hasop; 256820f1ed55SBarry Smith const PetscScalar *diag; 2569887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 257020f1ed55SBarry Smith PetscInt i,n; 2571fa22f6d0SBarry Smith 2572fa22f6d0SBarry Smith if (!mat->xx1) { 2573fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2574fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2575fa22f6d0SBarry Smith } 2576fa22f6d0SBarry Smith xx1 = mat->xx1; 2577fa22f6d0SBarry Smith bb1 = mat->bb1; 2578fa22f6d0SBarry Smith 257941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2580fa22f6d0SBarry Smith 2581fa22f6d0SBarry Smith if (!mat->diag) { 2582effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2583fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2584fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2585fa22f6d0SBarry Smith } 2586fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2587fa22f6d0SBarry Smith 2588fa22f6d0SBarry Smith if (hasop) { 2589fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2590887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 259120f1ed55SBarry Smith } else { 259220f1ed55SBarry Smith /* 259320f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 259420f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2595887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 259620f1ed55SBarry Smith */ 259720f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 259820f1ed55SBarry Smith ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 259920f1ed55SBarry Smith ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 260020f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 260120f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2602887ee2caSBarry Smith if (omega == 1.0) { 260320f1ed55SBarry Smith for (i=0; i<n; i++) { 260420f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 260520f1ed55SBarry Smith } 260620f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2607887ee2caSBarry Smith } else { 2608887ee2caSBarry Smith for (i=0; i<n; i++) { 2609887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2610887ee2caSBarry Smith } 2611887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2612887ee2caSBarry Smith } 261320f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 261420f1ed55SBarry Smith ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 261520f1ed55SBarry Smith ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 261620f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 261720f1ed55SBarry Smith } 2618fa22f6d0SBarry Smith 2619fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2620fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2621fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2622fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2623fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2624fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2625fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2626fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2627fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2628fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2629effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2630fa22f6d0SBarry Smith 2631fa22f6d0SBarry Smith /* local sweep */ 263241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2633fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2634ffe4fb16SHong Zhang } else { 2635*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2636ffe4fb16SHong Zhang } 2637ffe4fb16SHong Zhang PetscFunctionReturn(0); 2638ffe4fb16SHong Zhang } 2639ffe4fb16SHong Zhang 2640ffe4fb16SHong Zhang #undef __FUNCT__ 264141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 264241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2643ffe4fb16SHong Zhang { 2644ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2645dfbe8321SBarry Smith PetscErrorCode ierr; 26462798e883SHong Zhang Vec lvec1,bb1; 26472798e883SHong Zhang 26482798e883SHong Zhang PetscFunctionBegin; 2649*e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2650*e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26512798e883SHong Zhang 2652c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26532798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 265441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26552798e883SHong Zhang its--; 26562798e883SHong Zhang } 26572798e883SHong Zhang 26582798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26592798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26602798e883SHong Zhang while (its--){ 2661ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26622798e883SHong Zhang 26632798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26642798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2665efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26662798e883SHong Zhang 2667ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26682798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2669ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26702798e883SHong Zhang 26712798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2672efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26732798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26742798e883SHong Zhang 2675ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26762798e883SHong Zhang 2677c14dc6b6SHong Zhang /* diagonal sweep */ 267841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26792798e883SHong Zhang } 26802798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26812798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2682c14dc6b6SHong Zhang } else { 2683*e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2684c14dc6b6SHong Zhang } 26852798e883SHong Zhang PetscFunctionReturn(0); 26862798e883SHong Zhang } 26872798e883SHong Zhang 2688