xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision e363090ee43a664d4526792f98cff07bf0c53dde)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay 
666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith 
1026cec326SBarry Smith   PetscFunctionBegin;
1126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith   PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith   PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith   PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith   PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith   PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith   PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith   PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith   PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith 
4426cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
52d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
5326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith 
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith 
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini 
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini   Mat       preallocator;
78b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
79b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
80b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   PetscFunctionBegin;
83b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini   }
90b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini     PetscInt           ncols;
102b147fbf3SStefano Zampini     const PetscInt    *row;
103b147fbf3SStefano Zampini     const PetscScalar *vals;
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini     }
111b147fbf3SStefano Zampini   }
1129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini   Mat      B;
122b147fbf3SStefano Zampini   PetscInt r;
123b147fbf3SStefano Zampini 
124b147fbf3SStefano Zampini   PetscFunctionBegin;
125b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini     PetscInt  bs;
128b147fbf3SStefano Zampini 
1299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet     if (!isdense) {
1389566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet     } else {
1429566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet     }
14428d58a37SPierre Jolivet   } else {
14528d58a37SPierre Jolivet     B = *newmat;
1469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet   }
148b147fbf3SStefano Zampini 
1499566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini     PetscInt           ncols;
152b147fbf3SStefano Zampini     const PetscInt    *row;
153b147fbf3SStefano Zampini     const PetscScalar *vals;
154b147fbf3SStefano Zampini 
1559566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini       PetscInt i;
16048a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini     } else {
1629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini     }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini   }
1699566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini 
173b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini   } else {
176b147fbf3SStefano Zampini     *newmat = B;
177b147fbf3SStefano Zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini 
18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay 
185a30f8f8cSSatish Balay   PetscFunctionBegin;
1869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay 
19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay 
195a30f8f8cSSatish Balay   PetscFunctionBegin;
1969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay 
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet   do { \
203a30f8f8cSSatish Balay     brow = row / bs; \
2049371c9d4SSatish Balay     rp   = aj + ai[brow]; \
2059371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay     rmax = aimax[brow]; \
2079371c9d4SSatish Balay     nrow = ailen[brow]; \
208a30f8f8cSSatish Balay     bcol = col / bs; \
2099371c9d4SSatish Balay     ridx = row % bs; \
2109371c9d4SSatish Balay     cidx = col % bs; \
2119371c9d4SSatish Balay     low  = 0; \
2129371c9d4SSatish Balay     high = nrow; \
213a30f8f8cSSatish Balay     while (high - low > 3) { \
214a30f8f8cSSatish Balay       t = (low + high) / 2; \
215a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay       else low = t; \
217a30f8f8cSSatish Balay     } \
218a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay         else *bap = value; \
224a30f8f8cSSatish Balay         goto a_noinsert; \
225a30f8f8cSSatish Balay       } \
226a30f8f8cSSatish Balay     } \
227a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay     N = nrow++ - 1; \
231a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
236a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
237a30f8f8cSSatish Balay   a_noinsert:; \
238a30f8f8cSSatish Balay     ailen[brow] = nrow; \
239a8f51744SPierre Jolivet   } while (0)
240e5e170daSBarry Smith 
241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
242a8f51744SPierre Jolivet   do { \
243a30f8f8cSSatish Balay     brow = row / bs; \
2449371c9d4SSatish Balay     rp   = bj + bi[brow]; \
2459371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
2469371c9d4SSatish Balay     rmax = bimax[brow]; \
2479371c9d4SSatish Balay     nrow = bilen[brow]; \
248a30f8f8cSSatish Balay     bcol = col / bs; \
2499371c9d4SSatish Balay     ridx = row % bs; \
2509371c9d4SSatish Balay     cidx = col % bs; \
2519371c9d4SSatish Balay     low  = 0; \
2529371c9d4SSatish Balay     high = nrow; \
253a30f8f8cSSatish Balay     while (high - low > 3) { \
254a30f8f8cSSatish Balay       t = (low + high) / 2; \
255a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
256a30f8f8cSSatish Balay       else low = t; \
257a30f8f8cSSatish Balay     } \
258a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
259a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
260a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
261a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
262a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
263a30f8f8cSSatish Balay         else *bap = value; \
264a30f8f8cSSatish Balay         goto b_noinsert; \
265a30f8f8cSSatish Balay       } \
266a30f8f8cSSatish Balay     } \
267a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2685f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
269fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
270a30f8f8cSSatish Balay     N = nrow++ - 1; \
271a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2729566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2749566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
275a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
276a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
277a30f8f8cSSatish Balay   b_noinsert:; \
278a30f8f8cSSatish Balay     bilen[brow] = nrow; \
279a8f51744SPierre Jolivet   } while (0)
280a30f8f8cSSatish Balay 
281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
282da81f932SPierre Jolivet    Any a(i,j) with i>j input by user is ignored or generates an error
283a30f8f8cSSatish Balay */
28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
285d71ae5a4SJacob Faibussowitsch {
286a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
287a30f8f8cSSatish Balay   MatScalar     value;
288ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2891302d50aSBarry Smith   PetscInt      i, j, row, col;
290d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
291d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
292d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
293a30f8f8cSSatish Balay 
294a30f8f8cSSatish Balay   /* Some Variables required in the macro */
295a30f8f8cSSatish Balay   Mat           A     = baij->A;
29657508eceSPierre Jolivet   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)A->data;
2971302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
298a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
299a30f8f8cSSatish Balay 
300a30f8f8cSSatish Balay   Mat          B     = baij->B;
30157508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
3021302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
303a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
304a30f8f8cSSatish Balay 
3051302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
3061302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
307a30f8f8cSSatish Balay   MatScalar *ap, *bap;
308a30f8f8cSSatish Balay 
309a30f8f8cSSatish Balay   /* for stash */
3100298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
3110298fd71SBarry Smith   MatScalar *v_loc = NULL;
312a30f8f8cSSatish Balay 
313a30f8f8cSSatish Balay   PetscFunctionBegin;
314a30f8f8cSSatish Balay   if (!baij->donotstash) {
31559ffdab8SBarry Smith     if (n > baij->n_loc) {
3169566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
3179566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
3189566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
3199566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
32026fbe8dcSKarl Rupp 
32159ffdab8SBarry Smith       baij->n_loc = n;
32259ffdab8SBarry Smith     }
32359ffdab8SBarry Smith     in_loc = baij->in_loc;
32459ffdab8SBarry Smith     v_loc  = baij->v_loc;
325a30f8f8cSSatish Balay   }
326a30f8f8cSSatish Balay 
327a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
328a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3295f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
330a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
331a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
332a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
33301b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
334966bd95aSPierre Jolivet           PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33501b2bd88SHong Zhang           continue; /* ignore lower triangular blocks */
33601b2bd88SHong Zhang         }
337a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
338a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
3399371c9d4SSatish Balay           brow = row / bs;
3409371c9d4SSatish Balay           bcol = col / bs;
341a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
342db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
343db4deed7SKarl Rupp           else value = v[i + j * m];
344d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3459566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
346f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
347f7d195e4SLawrence Mitchell           continue;
348f7d195e4SLawrence Mitchell         } else {
349f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
350f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
351a30f8f8cSSatish Balay           if (mat->was_assembled) {
35248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
353a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
354eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35571730473SSatish Balay             col = col - 1;
356a30f8f8cSSatish Balay #else
35771730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
358a30f8f8cSSatish Balay #endif
359f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) {
3609566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
361a30f8f8cSSatish Balay               col = in[j];
362a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
363a30f8f8cSSatish Balay               B     = baij->B;
36457508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
3659371c9d4SSatish Balay               bimax = b->imax;
3669371c9d4SSatish Balay               bi    = b->i;
3679371c9d4SSatish Balay               bilen = b->ilen;
3689371c9d4SSatish Balay               bj    = b->j;
369a30f8f8cSSatish Balay               ba    = b->a;
37071730473SSatish Balay             } else col += in[j] % bs;
371a30f8f8cSSatish Balay           } else col = in[j];
372db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
373db4deed7SKarl Rupp           else value = v[i + j * m];
374d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3759566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
376a30f8f8cSSatish Balay         }
377a30f8f8cSSatish Balay       }
378a30f8f8cSSatish Balay     } else { /* off processor entry */
3795f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
380a30f8f8cSSatish Balay       if (!baij->donotstash) {
3815080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
382a30f8f8cSSatish Balay         n_loc          = 0;
383a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
384f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
385a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
386a30f8f8cSSatish Balay           if (roworiented) {
387a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
388a30f8f8cSSatish Balay           } else {
389a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
390a30f8f8cSSatish Balay           }
391a30f8f8cSSatish Balay           n_loc++;
392a30f8f8cSSatish Balay         }
3939566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     }
396a30f8f8cSSatish Balay   }
3973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
398a30f8f8cSSatish Balay }
399a30f8f8cSSatish Balay 
400d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
401d71ae5a4SJacob Faibussowitsch {
40236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
40336bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40436bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40536bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40636bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
40736bd2089SBarry Smith   const PetscScalar *value       = v;
40836bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
40936bd2089SBarry Smith 
41036bd2089SBarry Smith   PetscFunctionBegin;
41136bd2089SBarry Smith   if (col < row) {
412966bd95aSPierre Jolivet     PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
413966bd95aSPierre Jolivet     PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41436bd2089SBarry Smith   }
41536bd2089SBarry Smith   rp    = aj + ai[row];
41636bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
41736bd2089SBarry Smith   rmax  = imax[row];
41836bd2089SBarry Smith   nrow  = ailen[row];
41936bd2089SBarry Smith   value = v;
42036bd2089SBarry Smith   low   = 0;
42136bd2089SBarry Smith   high  = nrow;
42236bd2089SBarry Smith 
42336bd2089SBarry Smith   while (high - low > 7) {
42436bd2089SBarry Smith     t = (low + high) / 2;
42536bd2089SBarry Smith     if (rp[t] > col) high = t;
42636bd2089SBarry Smith     else low = t;
42736bd2089SBarry Smith   }
42836bd2089SBarry Smith   for (i = low; i < high; i++) {
42936bd2089SBarry Smith     if (rp[i] > col) break;
43036bd2089SBarry Smith     if (rp[i] == col) {
43136bd2089SBarry Smith       bap = ap + bs2 * i;
43236bd2089SBarry Smith       if (roworiented) {
43336bd2089SBarry Smith         if (is == ADD_VALUES) {
43436bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
435ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43636bd2089SBarry Smith           }
43736bd2089SBarry Smith         } else {
43836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
439ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44036bd2089SBarry Smith           }
44136bd2089SBarry Smith         }
44236bd2089SBarry Smith       } else {
44336bd2089SBarry Smith         if (is == ADD_VALUES) {
44436bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
445ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44636bd2089SBarry Smith           }
44736bd2089SBarry Smith         } else {
44836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
449ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45036bd2089SBarry Smith           }
45136bd2089SBarry Smith         }
45236bd2089SBarry Smith       }
45336bd2089SBarry Smith       goto noinsert2;
45436bd2089SBarry Smith     }
45536bd2089SBarry Smith   }
45636bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4575f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
45836bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4599371c9d4SSatish Balay   N = nrow++ - 1;
4609371c9d4SSatish Balay   high++;
46136bd2089SBarry Smith   /* shift up all the later entries in this row */
4629566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4639566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46436bd2089SBarry Smith   rp[i] = col;
46536bd2089SBarry Smith   bap   = ap + bs2 * i;
46636bd2089SBarry Smith   if (roworiented) {
46736bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
468ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
46936bd2089SBarry Smith     }
47036bd2089SBarry Smith   } else {
47136bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
472ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47336bd2089SBarry Smith     }
47436bd2089SBarry Smith   }
47536bd2089SBarry Smith noinsert2:;
47636bd2089SBarry Smith   ailen[row] = nrow;
4773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47836bd2089SBarry Smith }
47936bd2089SBarry Smith 
48036bd2089SBarry Smith /*
48136bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
48236bd2089SBarry Smith */
483d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
484d71ae5a4SJacob Faibussowitsch {
48536bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
48636bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
48736bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
48836bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
48936bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
49036bd2089SBarry Smith   const PetscScalar *value       = v;
49136bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
49236bd2089SBarry Smith 
49336bd2089SBarry Smith   PetscFunctionBegin;
49436bd2089SBarry Smith   rp    = aj + ai[row];
49536bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
49636bd2089SBarry Smith   rmax  = imax[row];
49736bd2089SBarry Smith   nrow  = ailen[row];
49836bd2089SBarry Smith   low   = 0;
49936bd2089SBarry Smith   high  = nrow;
50036bd2089SBarry Smith   value = v;
50136bd2089SBarry Smith   while (high - low > 7) {
50236bd2089SBarry Smith     t = (low + high) / 2;
50336bd2089SBarry Smith     if (rp[t] > col) high = t;
50436bd2089SBarry Smith     else low = t;
50536bd2089SBarry Smith   }
50636bd2089SBarry Smith   for (i = low; i < high; i++) {
50736bd2089SBarry Smith     if (rp[i] > col) break;
50836bd2089SBarry Smith     if (rp[i] == col) {
50936bd2089SBarry Smith       bap = ap + bs2 * i;
51036bd2089SBarry Smith       if (roworiented) {
51136bd2089SBarry Smith         if (is == ADD_VALUES) {
51236bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
513ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51436bd2089SBarry Smith           }
51536bd2089SBarry Smith         } else {
51636bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
517ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
51836bd2089SBarry Smith           }
51936bd2089SBarry Smith         }
52036bd2089SBarry Smith       } else {
52136bd2089SBarry Smith         if (is == ADD_VALUES) {
52236bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
523ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52436bd2089SBarry Smith             bap += bs;
52536bd2089SBarry Smith           }
52636bd2089SBarry Smith         } else {
52736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
528ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
52936bd2089SBarry Smith             bap += bs;
53036bd2089SBarry Smith           }
53136bd2089SBarry Smith         }
53236bd2089SBarry Smith       }
53336bd2089SBarry Smith       goto noinsert2;
53436bd2089SBarry Smith     }
53536bd2089SBarry Smith   }
53636bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
5375f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
53836bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5399371c9d4SSatish Balay   N = nrow++ - 1;
5409371c9d4SSatish Balay   high++;
54136bd2089SBarry Smith   /* shift up all the later entries in this row */
5429566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5439566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54436bd2089SBarry Smith   rp[i] = col;
54536bd2089SBarry Smith   bap   = ap + bs2 * i;
54636bd2089SBarry Smith   if (roworiented) {
54736bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
548ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
54936bd2089SBarry Smith     }
55036bd2089SBarry Smith   } else {
55136bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
552ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55336bd2089SBarry Smith     }
55436bd2089SBarry Smith   }
55536bd2089SBarry Smith noinsert2:;
55636bd2089SBarry Smith   ailen[row] = nrow;
5573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55836bd2089SBarry Smith }
55936bd2089SBarry Smith 
56036bd2089SBarry Smith /*
56136bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
56236bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56336bd2089SBarry Smith */
56466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
565d71ae5a4SJacob Faibussowitsch {
5660880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
567f15d580aSBarry Smith   const MatScalar *value;
568f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
569ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
570899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
571476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
572476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5730880e062SHong Zhang 
574a30f8f8cSSatish Balay   PetscFunctionBegin;
5750880e062SHong Zhang   if (!barray) {
5769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5770880e062SHong Zhang     baij->barray = barray;
5780880e062SHong Zhang   }
5790880e062SHong Zhang 
5800880e062SHong Zhang   if (roworiented) {
5810880e062SHong Zhang     stepval = (n - 1) * bs;
5820880e062SHong Zhang   } else {
5830880e062SHong Zhang     stepval = (m - 1) * bs;
5840880e062SHong Zhang   }
5850880e062SHong Zhang   for (i = 0; i < m; i++) {
5860880e062SHong Zhang     if (im[i] < 0) continue;
5876bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5880880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5890880e062SHong Zhang       row = im[i] - rstart;
5900880e062SHong Zhang       for (j = 0; j < n; j++) {
591f3f98c53SJed Brown         if (im[i] > in[j]) {
592966bd95aSPierre Jolivet           PetscCheck(ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
593966bd95aSPierre Jolivet           continue; /* ignore lower triangular blocks */
594f3f98c53SJed Brown         }
5950880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
596966bd95aSPierre Jolivet         if (roworiented && n == 1) {
597f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
5980880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
599f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
6000880e062SHong Zhang         } else { /* Here a copy is required */
6010880e062SHong Zhang           if (roworiented) {
6020880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
6030880e062SHong Zhang           } else {
6040880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
6050880e062SHong Zhang           }
6060880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
607ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6080880e062SHong Zhang           }
6090880e062SHong Zhang           barray -= bs2;
6100880e062SHong Zhang         }
6110880e062SHong Zhang 
6120880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
6130880e062SHong Zhang           col = in[j] - cstart;
6149566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
615f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
616f7d195e4SLawrence Mitchell           continue;
617f7d195e4SLawrence Mitchell         } else {
618f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6190880e062SHong Zhang           if (mat->was_assembled) {
62048a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6210880e062SHong Zhang 
6220880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
623eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
624b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
6250880e062SHong Zhang #else
626b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
6270880e062SHong Zhang #endif
628f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
6299566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6300880e062SHong Zhang               col = in[j];
6310880e062SHong Zhang             }
63226fbe8dcSKarl Rupp           } else col = in[j];
6339566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6340880e062SHong Zhang         }
6350880e062SHong Zhang       }
6360880e062SHong Zhang     } else {
6375f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6380880e062SHong Zhang       if (!baij->donotstash) {
6390880e062SHong Zhang         if (roworiented) {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410880e062SHong Zhang         } else {
6429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6430880e062SHong Zhang         }
6440880e062SHong Zhang       }
6450880e062SHong Zhang     }
6460880e062SHong Zhang   }
6473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
648a30f8f8cSSatish Balay }
649a30f8f8cSSatish Balay 
65066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
651d71ae5a4SJacob Faibussowitsch {
652f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
653d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
654d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
655a30f8f8cSSatish Balay 
656a30f8f8cSSatish Balay   PetscFunctionBegin;
657a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
65854c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
65954c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
660966bd95aSPierre Jolivet     PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
661a30f8f8cSSatish Balay     row = idxm[i] - bsrstart;
662a30f8f8cSSatish Balay     for (j = 0; j < n; j++) {
66354c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
66454c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
665a30f8f8cSSatish Balay       if (idxn[j] >= bscstart && idxn[j] < bscend) {
666a30f8f8cSSatish Balay         col = idxn[j] - bscstart;
6679566063dSJacob Faibussowitsch         PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
668a30f8f8cSSatish Balay       } else {
66948a46eb9SPierre Jolivet         if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
670a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
671eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
672a30f8f8cSSatish Balay         data--;
673a30f8f8cSSatish Balay #else
674a30f8f8cSSatish Balay         data = baij->colmap[idxn[j] / bs] - 1;
675a30f8f8cSSatish Balay #endif
676966bd95aSPierre Jolivet         if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0;
677a30f8f8cSSatish Balay         else {
678a30f8f8cSSatish Balay           col = data + idxn[j] % bs;
6799566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
680a30f8f8cSSatish Balay         }
681a30f8f8cSSatish Balay       }
682a30f8f8cSSatish Balay     }
683a30f8f8cSSatish Balay   }
6843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
685a30f8f8cSSatish Balay }
686a30f8f8cSSatish Balay 
68766976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
688d71ae5a4SJacob Faibussowitsch {
689a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
690a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
691a30f8f8cSSatish Balay 
692a30f8f8cSSatish Balay   PetscFunctionBegin;
693a30f8f8cSSatish Balay   if (baij->size == 1) {
6949566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
695a30f8f8cSSatish Balay   } else {
696a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
6979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
6989566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
6999371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
70075dbe01dSPierre Jolivet       lnorm2++; /* square power of norm(A) */
7019566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
7029371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
70375dbe01dSPierre Jolivet       lnorm2--; /* square power of norm(B) */
704462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7058f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7069566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
7070b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7080b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7090b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
710e91c04dfSPierre Jolivet       PetscReal    *rsum, vabs;
711899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
712d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7130b8dc8d2SHong Zhang       MatScalar    *v;
7140b8dc8d2SHong Zhang 
71575dbe01dSPierre Jolivet       PetscCall(PetscCalloc1(mat->cmap->N, &rsum));
7160b8dc8d2SHong Zhang       /* Amat */
7179371c9d4SSatish Balay       v  = amat->a;
7189371c9d4SSatish Balay       jj = amat->j;
7190b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7200b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7210b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
7220b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7239371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
7249371c9d4SSatish Balay           jj++;
7250b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7260b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7279371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7289371c9d4SSatish Balay               v++;
7290b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7300b8dc8d2SHong Zhang               /* non-diagonal block */
7310b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7320b8dc8d2SHong Zhang             }
7330b8dc8d2SHong Zhang           }
7340b8dc8d2SHong Zhang         }
7359566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7360b8dc8d2SHong Zhang       }
7370b8dc8d2SHong Zhang       /* Bmat */
7389371c9d4SSatish Balay       v  = bmat->a;
7399371c9d4SSatish Balay       jj = bmat->j;
7400b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7410b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7420b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
7430b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7449371c9d4SSatish Balay           gcol = bs * garray[*jj];
7459371c9d4SSatish Balay           jj++;
7460b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7470b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7489371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7499371c9d4SSatish Balay               v++;
7500b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7510b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
7520b8dc8d2SHong Zhang             }
7530b8dc8d2SHong Zhang           }
7540b8dc8d2SHong Zhang         }
7559566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7560b8dc8d2SHong Zhang       }
757e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7580b8dc8d2SHong Zhang       *norm = 0.0;
759d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
760e91c04dfSPierre Jolivet         if (rsum[col] > *norm) *norm = rsum[col];
7610b8dc8d2SHong Zhang       }
762e91c04dfSPierre Jolivet       PetscCall(PetscFree(rsum));
763f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
764a30f8f8cSSatish Balay   }
7653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
766a30f8f8cSSatish Balay }
767a30f8f8cSSatish Balay 
76866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
769d71ae5a4SJacob Faibussowitsch {
770a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7711302d50aSBarry Smith   PetscInt      nstash, reallocs;
772a30f8f8cSSatish Balay 
773a30f8f8cSSatish Balay   PetscFunctionBegin;
7743ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
775a30f8f8cSSatish Balay 
7769566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7779566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7789566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7799566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7809566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7819566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
783a30f8f8cSSatish Balay }
784a30f8f8cSSatish Balay 
78566976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
786d71ae5a4SJacob Faibussowitsch {
787a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
788a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
78913f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
790e44c0bd4SBarry Smith   PetscInt     *row, *col;
791c0edf612SJunchao Zhang   PetscBool     all_assembled;
79213f74950SBarry Smith   PetscMPIInt   n;
793ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
794a30f8f8cSSatish Balay   MatScalar    *val;
795a30f8f8cSSatish Balay 
79691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
797a30f8f8cSSatish Balay   PetscFunctionBegin;
7984cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
799a30f8f8cSSatish Balay     while (1) {
8009566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
801a30f8f8cSSatish Balay       if (!flg) break;
802a30f8f8cSSatish Balay 
803a30f8f8cSSatish Balay       for (i = 0; i < n;) {
804a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
80526fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
80626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
80726fbe8dcSKarl Rupp         }
808a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
809a30f8f8cSSatish Balay         else ncols = n - i;
810a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
8119566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
812a30f8f8cSSatish Balay         i = j;
813a30f8f8cSSatish Balay       }
814a30f8f8cSSatish Balay     }
8159566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
816a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
8175e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
818a30f8f8cSSatish Balay        restore the original flags */
819a30f8f8cSSatish Balay     r1 = baij->roworiented;
820a30f8f8cSSatish Balay     r2 = a->roworiented;
82191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
82226fbe8dcSKarl Rupp 
823a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
824a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
82526fbe8dcSKarl Rupp 
826b638e6b4SJunchao Zhang     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworiented */
827a30f8f8cSSatish Balay     while (1) {
8289566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
829a30f8f8cSSatish Balay       if (!flg) break;
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay       for (i = 0; i < n;) {
832a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
83326fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
83426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
83526fbe8dcSKarl Rupp         }
836a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
837a30f8f8cSSatish Balay         else ncols = n - i;
8389566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
839a30f8f8cSSatish Balay         i = j;
840a30f8f8cSSatish Balay       }
841a30f8f8cSSatish Balay     }
8429566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
84326fbe8dcSKarl Rupp 
844a30f8f8cSSatish Balay     baij->roworiented = r1;
845a30f8f8cSSatish Balay     a->roworiented    = r2;
84626fbe8dcSKarl Rupp 
847b638e6b4SJunchao Zhang     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */
848a30f8f8cSSatish Balay   }
849a30f8f8cSSatish Balay 
8509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
8519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
852a30f8f8cSSatish Balay 
853b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
8546aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
855a30f8f8cSSatish Balay   /*
856a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
857b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
858a30f8f8cSSatish Balay   */
859a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8605440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
861c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
862a30f8f8cSSatish Balay   }
863a30f8f8cSSatish Balay 
864ac530a7eSPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */
8659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
867a30f8f8cSSatish Balay 
8689566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
86926fbe8dcSKarl Rupp 
870f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8714f9cfa9eSBarry Smith 
8724f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
873f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
874e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
875462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
876e56f5c9eSBarry Smith   }
8773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
878a30f8f8cSSatish Balay }
879a30f8f8cSSatish Balay 
880dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8819804daf3SBarry Smith #include <petscdraw.h>
882d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
883d71ae5a4SJacob Faibussowitsch {
884a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
885d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8867da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
8879f196a02SMartin Diehl   PetscBool         isascii, isdraw;
888b0a32e0cSBarry Smith   PetscViewer       sviewer;
889f3ef73ceSBarry Smith   PetscViewerFormat format;
890a30f8f8cSSatish Balay 
891a30f8f8cSSatish Balay   PetscFunctionBegin;
8929f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
8939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
8949f196a02SMartin Diehl   if (isascii) {
8959566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
896456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
897a30f8f8cSSatish Balay       MatInfo info;
8989566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
8999566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9009566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9019371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
902835f2295SStefano Zampini                                                    mat->rmap->bs, info.memory));
9039566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9049566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9059566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9069566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9079566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9089566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9109566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9113ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
912*e363090eSPierre Jolivet     } else if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_FACTOR_INFO) PetscFunctionReturn(PETSC_SUCCESS);
913a30f8f8cSSatish Balay   }
914a30f8f8cSSatish Balay 
915a30f8f8cSSatish Balay   if (isdraw) {
916b0a32e0cSBarry Smith     PetscDraw draw;
917ace3abfcSBarry Smith     PetscBool isnull;
9189566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9199566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
9203ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
921a30f8f8cSSatish Balay   }
922a30f8f8cSSatish Balay 
9237da1fb6eSBarry Smith   {
924a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
925a30f8f8cSSatish Balay     Mat           A;
92665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
92765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
928d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
929a30f8f8cSSatish Balay     MatScalar    *a;
9303e219373SBarry Smith     const char   *matname;
931a30f8f8cSSatish Balay 
932f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9339566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
934dd400576SPatrick Sanan     if (rank == 0) {
9359566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
936a30f8f8cSSatish Balay     } else {
9379566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
938a30f8f8cSSatish Balay     }
9399566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
9409566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9419566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
942a30f8f8cSSatish Balay 
943a30f8f8cSSatish Balay     /* copy over the A part */
94465d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9459371c9d4SSatish Balay     ai   = Aloc->i;
9469371c9d4SSatish Balay     aj   = Aloc->j;
9479371c9d4SSatish Balay     a    = Aloc->a;
9489566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
949a30f8f8cSSatish Balay 
950a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
951e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
95226fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
953a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
954e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
955a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9569566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
95726fbe8dcSKarl Rupp           col++;
95826fbe8dcSKarl Rupp           a += bs;
959a30f8f8cSSatish Balay         }
960a30f8f8cSSatish Balay       }
961a30f8f8cSSatish Balay     }
962a30f8f8cSSatish Balay     /* copy over the B part */
96365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9649371c9d4SSatish Balay     ai   = Bloc->i;
9659371c9d4SSatish Balay     aj   = Bloc->j;
9669371c9d4SSatish Balay     a    = Bloc->a;
967a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
968e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
96926fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
970a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
971a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
972a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9739566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
97426fbe8dcSKarl Rupp           col++;
97526fbe8dcSKarl Rupp           a += bs;
976a30f8f8cSSatish Balay         }
977a30f8f8cSSatish Balay       }
978a30f8f8cSSatish Balay     }
9799566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9809566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9819566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
982a30f8f8cSSatish Balay     /*
983a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
984b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
985a30f8f8cSSatish Balay     */
9869566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
98723a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
988dd400576SPatrick Sanan     if (rank == 0) {
989f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname));
990f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer));
991a30f8f8cSSatish Balay     }
9929566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
9939566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
994a30f8f8cSSatish Balay   }
9953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
996a30f8f8cSSatish Balay }
997a30f8f8cSSatish Balay 
998618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
999618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1000d1654148SHong Zhang 
100166976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1002d71ae5a4SJacob Faibussowitsch {
10039f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
1004a30f8f8cSSatish Balay 
1005a30f8f8cSSatish Balay   PetscFunctionBegin;
10069f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
10079566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10099566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1010ac530a7eSPierre Jolivet   if (isascii || isdraw || issocket) PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
1011ac530a7eSPierre Jolivet   else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1013a30f8f8cSSatish Balay }
1014a30f8f8cSSatish Balay 
1015789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX)
1016789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1017d71ae5a4SJacob Faibussowitsch {
1018547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1019eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10206de40e93SBarry Smith   PetscScalar       *from;
10216de40e93SBarry Smith   const PetscScalar *x;
1022547795f9SHong Zhang 
1023547795f9SHong Zhang   PetscFunctionBegin;
1024547795f9SHong Zhang   /* diagonal part */
10259566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1026629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1027629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1028629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1029547795f9SHong Zhang 
1030547795f9SHong Zhang   /* subdiagonal part */
10315f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10329566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1033547795f9SHong Zhang 
1034547795f9SHong Zhang   /* copy x into the vec slvec0 */
10359566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10369566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1037547795f9SHong Zhang 
10389566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1041547795f9SHong Zhang 
10429566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1044547795f9SHong Zhang   /* supperdiagonal part */
10459566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1047547795f9SHong Zhang }
1048789afff4SPierre Jolivet #endif
1049547795f9SHong Zhang 
105066976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1051d71ae5a4SJacob Faibussowitsch {
1052a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1053eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1054d9ca1df4SBarry Smith   PetscScalar       *from;
1055d9ca1df4SBarry Smith   const PetscScalar *x;
1056a9d4b620SHong Zhang 
1057a9d4b620SHong Zhang   PetscFunctionBegin;
1058a9d4b620SHong Zhang   /* diagonal part */
10599566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1060629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1061629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1062629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1063a9d4b620SHong Zhang 
1064a9d4b620SHong Zhang   /* subdiagonal part */
10659566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1066fc165ae2SBarry Smith 
1067a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10689566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1070a9d4b620SHong Zhang 
10719566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10729566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10739566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1074fc165ae2SBarry Smith 
10759566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10769566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1077a9d4b620SHong Zhang   /* supperdiagonal part */
10789566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1080a9d4b620SHong Zhang }
1081a9d4b620SHong Zhang 
108266976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
108366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1084d71ae5a4SJacob Faibussowitsch {
1085eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1086eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1087629a200eSBarry Smith   PetscScalar       *from;
1088eb1ec7c1SStefano Zampini   const PetscScalar *x;
1089eb1ec7c1SStefano Zampini 
1090eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1091eb1ec7c1SStefano Zampini   /* diagonal part */
10929566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1093629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1094629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1095eb1ec7c1SStefano Zampini 
1096eb1ec7c1SStefano Zampini   /* subdiagonal part */
10975f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10989566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1099eb1ec7c1SStefano Zampini 
1100eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11019566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11029566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11039566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11049566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1105eb1ec7c1SStefano Zampini 
11069566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11089566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1109eb1ec7c1SStefano Zampini 
1110eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11119566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1113eb1ec7c1SStefano Zampini }
111466976f2fSJacob Faibussowitsch #endif
1115eb1ec7c1SStefano Zampini 
111666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1117d71ae5a4SJacob Faibussowitsch {
1118de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1119d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1120629a200eSBarry Smith   PetscScalar       *from;
1121d9ca1df4SBarry Smith   const PetscScalar *x;
1122a9d4b620SHong Zhang 
1123a9d4b620SHong Zhang   PetscFunctionBegin;
1124a9d4b620SHong Zhang   /* diagonal part */
11259566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1126629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1127629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1128a9d4b620SHong Zhang 
1129a9d4b620SHong Zhang   /* subdiagonal part */
11309566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1131a9d4b620SHong Zhang 
1132a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11339566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11349566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11359566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11369566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1137a9d4b620SHong Zhang 
11389566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11409566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1141a9d4b620SHong Zhang 
1142a9d4b620SHong Zhang   /* supperdiagonal part */
11439566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1145a9d4b620SHong Zhang }
1146a9d4b620SHong Zhang 
1147a30f8f8cSSatish Balay /*
1148a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1149a30f8f8cSSatish Balay    diagonal block
1150a30f8f8cSSatish Balay */
115166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1152d71ae5a4SJacob Faibussowitsch {
1153a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1154a30f8f8cSSatish Balay 
1155a30f8f8cSSatish Balay   PetscFunctionBegin;
115608401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11579566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1159a30f8f8cSSatish Balay }
1160a30f8f8cSSatish Balay 
116166976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1162d71ae5a4SJacob Faibussowitsch {
1163a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1164a30f8f8cSSatish Balay 
1165a30f8f8cSSatish Balay   PetscFunctionBegin;
11669566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11679566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1169a30f8f8cSSatish Balay }
1170a30f8f8cSSatish Balay 
117166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1172d71ae5a4SJacob Faibussowitsch {
1173d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1174d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1175d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1176d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1177899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1178d0d4cfc2SHong Zhang 
1179a30f8f8cSSatish Balay   PetscFunctionBegin;
11805f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1181d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1182d0d4cfc2SHong Zhang 
1183d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1184d0d4cfc2SHong Zhang     /*
1185d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1186d0d4cfc2SHong Zhang     */
1187d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1188d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1189d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1190d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1191d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
119226fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1193d0d4cfc2SHong Zhang     }
11949566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1195d0d4cfc2SHong Zhang   }
1196d0d4cfc2SHong Zhang 
11975f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1198d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1199d0d4cfc2SHong Zhang 
12009371c9d4SSatish Balay   pvA = &vworkA;
12019371c9d4SSatish Balay   pcA = &cworkA;
12029371c9d4SSatish Balay   pvB = &vworkB;
12039371c9d4SSatish Balay   pcB = &cworkB;
12049371c9d4SSatish Balay   if (!v) {
12059371c9d4SSatish Balay     pvA = NULL;
12069371c9d4SSatish Balay     pvB = NULL;
12079371c9d4SSatish Balay   }
12089371c9d4SSatish Balay   if (!idx) {
12099371c9d4SSatish Balay     pcA = NULL;
12109371c9d4SSatish Balay     if (!v) pcB = NULL;
12119371c9d4SSatish Balay   }
12129566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12139566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1214d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1215d0d4cfc2SHong Zhang 
1216d0d4cfc2SHong Zhang   cmap = mat->garray;
1217d0d4cfc2SHong Zhang   if (v || idx) {
1218d0d4cfc2SHong Zhang     if (nztot) {
1219d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1220d0d4cfc2SHong Zhang       PetscInt imark = -1;
1221d0d4cfc2SHong Zhang       if (v) {
1222d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1223d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1224d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1225d0d4cfc2SHong Zhang           else break;
1226d0d4cfc2SHong Zhang         }
1227d0d4cfc2SHong Zhang         imark = i;
1228d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1229d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1230d0d4cfc2SHong Zhang       }
1231d0d4cfc2SHong Zhang       if (idx) {
1232d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1233d0d4cfc2SHong Zhang         if (imark > -1) {
1234ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1235d0d4cfc2SHong Zhang         } else {
1236d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
123726fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1238d0d4cfc2SHong Zhang             else break;
1239d0d4cfc2SHong Zhang           }
1240d0d4cfc2SHong Zhang           imark = i;
1241d0d4cfc2SHong Zhang         }
1242d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1243d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1244d0d4cfc2SHong Zhang       }
1245d0d4cfc2SHong Zhang     } else {
1246f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1247f4259b30SLisandro Dalcin       if (v) *v = NULL;
1248d0d4cfc2SHong Zhang     }
1249d0d4cfc2SHong Zhang   }
1250d0d4cfc2SHong Zhang   *nz = nztot;
12519566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12529566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1254a30f8f8cSSatish Balay }
1255a30f8f8cSSatish Balay 
125666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1257d71ae5a4SJacob Faibussowitsch {
1258a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1259a30f8f8cSSatish Balay 
1260a30f8f8cSSatish Balay   PetscFunctionBegin;
12615f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1262a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
12633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1264a30f8f8cSSatish Balay }
1265a30f8f8cSSatish Balay 
126666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1267d71ae5a4SJacob Faibussowitsch {
1268d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1269d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1270d0d4cfc2SHong Zhang 
1271d0d4cfc2SHong Zhang   PetscFunctionBegin;
1272d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
12733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1274d0d4cfc2SHong Zhang }
127566976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1276d71ae5a4SJacob Faibussowitsch {
1277d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1278d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1279d0d4cfc2SHong Zhang 
1280d0d4cfc2SHong Zhang   PetscFunctionBegin;
1281d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
12823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1283d0d4cfc2SHong Zhang }
1284d0d4cfc2SHong Zhang 
128566976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1286d71ae5a4SJacob Faibussowitsch {
12875f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
12885f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
12892726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
12902726fb6dSPierre Jolivet 
12919566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
12929566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
12935f80ce2aSJacob Faibussowitsch   }
12943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12952726fb6dSPierre Jolivet }
12962726fb6dSPierre Jolivet 
129766976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1298d71ae5a4SJacob Faibussowitsch {
129999cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
130099cafbc1SBarry Smith 
130199cafbc1SBarry Smith   PetscFunctionBegin;
13029566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13039566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
13043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
130599cafbc1SBarry Smith }
130699cafbc1SBarry Smith 
130766976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1308d71ae5a4SJacob Faibussowitsch {
130999cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
131099cafbc1SBarry Smith 
131199cafbc1SBarry Smith   PetscFunctionBegin;
13129566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13139566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
13143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
131599cafbc1SBarry Smith }
131699cafbc1SBarry Smith 
13177dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
131836032a97SHong Zhang    Input: isrow       - distributed(parallel),
131936032a97SHong Zhang           iscol_local - locally owned (seq)
132036032a97SHong Zhang */
132166976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1322d71ae5a4SJacob Faibussowitsch {
13238f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13248f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
132536032a97SHong Zhang 
132636032a97SHong Zhang   PetscFunctionBegin;
132766976f2fSJacob Faibussowitsch   *flg = PETSC_FALSE;
13289566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13299566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
133066976f2fSJacob Faibussowitsch   if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS);
13318f46ffcaSHong Zhang 
13329566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13339566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13348f46ffcaSHong Zhang 
13359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13379566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13389566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13399566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13409566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13418f46ffcaSHong Zhang 
13428f46ffcaSHong Zhang   nmatch = 0;
13438f46ffcaSHong Zhang   k      = 0;
13448f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13458f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13468f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13479371c9d4SSatish Balay         k = j;
13489371c9d4SSatish Balay         nmatch++;
13498f46ffcaSHong Zhang         break;
13508f46ffcaSHong Zhang       }
13518f46ffcaSHong Zhang     }
13528f46ffcaSHong Zhang   }
13539566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13549566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13559566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13569566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13571098a8e8SHong Zhang   if (nmatch < sz1) {
13581098a8e8SHong Zhang     *flg = PETSC_FALSE;
13591098a8e8SHong Zhang   } else {
13601098a8e8SHong Zhang     *flg = PETSC_TRUE;
13611098a8e8SHong Zhang   }
13623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13638f46ffcaSHong Zhang }
136436032a97SHong Zhang 
136566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1366d71ae5a4SJacob Faibussowitsch {
1367fdfbdca6SPierre Jolivet   Mat       C[2];
1368fdfbdca6SPierre Jolivet   IS        iscol_local, isrow_local;
1369fdfbdca6SPierre Jolivet   PetscInt  csize, csize_local, rsize;
1370fdfbdca6SPierre Jolivet   PetscBool isequal, issorted, isidentity = PETSC_FALSE;
137136032a97SHong Zhang 
137236032a97SHong Zhang   PetscFunctionBegin;
13739566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1374fdfbdca6SPierre Jolivet   PetscCall(ISGetLocalSize(isrow, &rsize));
137536032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13769566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13775f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
137836032a97SHong Zhang   } else {
13799566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
13809566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
1381fdfbdca6SPierre Jolivet     PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted");
13828f46ffcaSHong Zhang   }
1383fdfbdca6SPierre Jolivet   PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
1384fdfbdca6SPierre Jolivet   if (!isequal) {
1385fdfbdca6SPierre Jolivet     PetscCall(ISGetLocalSize(iscol_local, &csize_local));
1386fdfbdca6SPierre Jolivet     isidentity = (PetscBool)(mat->cmap->N == csize_local);
1387fdfbdca6SPierre Jolivet     if (!isidentity) {
1388fdfbdca6SPierre Jolivet       if (call == MAT_REUSE_MATRIX) {
1389fdfbdca6SPierre Jolivet         PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local));
1390fdfbdca6SPierre Jolivet         PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1391fdfbdca6SPierre Jolivet       } else {
1392fdfbdca6SPierre Jolivet         PetscCall(ISAllGather(isrow, &isrow_local));
1393fdfbdca6SPierre Jolivet         PetscCall(ISSorted(isrow_local, &issorted));
1394fdfbdca6SPierre Jolivet         PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted");
1395fdfbdca6SPierre Jolivet       }
1396fdfbdca6SPierre Jolivet     }
1397fdfbdca6SPierre Jolivet   }
13987dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
1399fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity)));
1400fdfbdca6SPierre Jolivet   if (!isequal && !isidentity) {
14018f46ffcaSHong Zhang     if (call == MAT_INITIAL_MATRIX) {
1402fdfbdca6SPierre Jolivet       IS       intersect;
1403fdfbdca6SPierre Jolivet       PetscInt ni;
1404fdfbdca6SPierre Jolivet 
1405fdfbdca6SPierre Jolivet       PetscCall(ISIntersect(isrow_local, iscol_local, &intersect));
1406fdfbdca6SPierre Jolivet       PetscCall(ISGetLocalSize(intersect, &ni));
1407fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&intersect));
1408fdfbdca6SPierre Jolivet       PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni);
1409fdfbdca6SPierre Jolivet     }
1410fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE));
1411fdfbdca6SPierre Jolivet     PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1));
1412fdfbdca6SPierre Jolivet     PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN));
1413fdfbdca6SPierre Jolivet     if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1414fdfbdca6SPierre Jolivet     else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat));
1415fdfbdca6SPierre Jolivet     else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1416fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C));
1417fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C + 1));
1418fdfbdca6SPierre Jolivet   }
1419fdfbdca6SPierre Jolivet   if (call == MAT_INITIAL_MATRIX) {
1420fdfbdca6SPierre Jolivet     if (!isequal && !isidentity) {
1421fdfbdca6SPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local));
1422fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&isrow_local));
1423fdfbdca6SPierre Jolivet     }
14249566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14259566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14268f46ffcaSHong Zhang   }
14273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14288f46ffcaSHong Zhang }
14298f46ffcaSHong Zhang 
143066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1431d71ae5a4SJacob Faibussowitsch {
1432a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1433a30f8f8cSSatish Balay 
1434a30f8f8cSSatish Balay   PetscFunctionBegin;
14359566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14369566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1438a30f8f8cSSatish Balay }
1439a30f8f8cSSatish Balay 
144066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1441d71ae5a4SJacob Faibussowitsch {
1442a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1443a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
14443966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1445a30f8f8cSSatish Balay 
1446a30f8f8cSSatish Balay   PetscFunctionBegin;
1447d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
144826fbe8dcSKarl Rupp 
14499566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
145026fbe8dcSKarl Rupp 
14519371c9d4SSatish Balay   isend[0] = info->nz_used;
14529371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14539371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14549371c9d4SSatish Balay   isend[3] = info->memory;
14559371c9d4SSatish Balay   isend[4] = info->mallocs;
145626fbe8dcSKarl Rupp 
14579566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
145826fbe8dcSKarl Rupp 
14599371c9d4SSatish Balay   isend[0] += info->nz_used;
14609371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14619371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14629371c9d4SSatish Balay   isend[3] += info->memory;
14639371c9d4SSatish Balay   isend[4] += info->mallocs;
1464a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1465a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1466a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1467a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1468a30f8f8cSSatish Balay     info->memory       = isend[3];
1469a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1470a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1471462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
147226fbe8dcSKarl Rupp 
1473a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1474a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1475a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1476a30f8f8cSSatish Balay     info->memory       = irecv[3];
1477a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1478a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1479462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
148026fbe8dcSKarl Rupp 
1481a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1482a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1483a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1484a30f8f8cSSatish Balay     info->memory       = irecv[3];
1485a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
148698921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1487a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1488a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1489a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
14903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1491a30f8f8cSSatish Balay }
1492a30f8f8cSSatish Balay 
149366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1494d71ae5a4SJacob Faibussowitsch {
1495a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1496d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1497a30f8f8cSSatish Balay 
1498a30f8f8cSSatish Balay   PetscFunctionBegin;
1499e98b92d7SKris Buschelman   switch (op) {
1500512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1501e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
150228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1503a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1504e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
150543674050SBarry Smith     MatCheckPreallocated(A, 1);
15069566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15079566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1508e98b92d7SKris Buschelman     break;
1509e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
151043674050SBarry Smith     MatCheckPreallocated(A, 1);
15114e0d8c25SBarry Smith     a->roworiented = flg;
151226fbe8dcSKarl Rupp 
15139566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15149566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1515e98b92d7SKris Buschelman     break;
1516d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1517d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1518d71ae5a4SJacob Faibussowitsch     break;
1519d71ae5a4SJacob Faibussowitsch   case MAT_USE_HASH_TABLE:
1520d71ae5a4SJacob Faibussowitsch     a->ht_flag = flg;
1521d71ae5a4SJacob Faibussowitsch     break;
1522d71ae5a4SJacob Faibussowitsch   case MAT_HERMITIAN:
15239725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
15240f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1525eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1526547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1527eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1528eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1529eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1530eb1ec7c1SStefano Zampini     }
15310f2140c7SStefano Zampini #endif
1532eeffb40dSHong Zhang     break;
1533ffa07934SHong Zhang   case MAT_SPD:
1534d71ae5a4SJacob Faibussowitsch   case MAT_SYMMETRIC:
15359725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1536eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1537eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1538eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1539eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1540eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1541eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1542eb1ec7c1SStefano Zampini     }
1543eb1ec7c1SStefano Zampini #endif
1544eeffb40dSHong Zhang     break;
154577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15469725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1547eeffb40dSHong Zhang     break;
1548d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_LOWER_TRIANGULAR:
1549d71ae5a4SJacob Faibussowitsch   case MAT_ERROR_LOWER_TRIANGULAR:
1550d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1551d71ae5a4SJacob Faibussowitsch     break;
1552d71ae5a4SJacob Faibussowitsch   case MAT_GETROW_UPPERTRIANGULAR:
1553d71ae5a4SJacob Faibussowitsch     aA->getrow_utriangular = flg;
1554d71ae5a4SJacob Faibussowitsch     break;
1555d71ae5a4SJacob Faibussowitsch   default:
1556888c827cSStefano Zampini     break;
1557a30f8f8cSSatish Balay   }
15583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1559a30f8f8cSSatish Balay }
1560a30f8f8cSSatish Balay 
156166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1562d71ae5a4SJacob Faibussowitsch {
1563a30f8f8cSSatish Balay   PetscFunctionBegin;
15647fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1565cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15669566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1567cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
15689566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1569fc4dec0aSBarry Smith   }
15703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1571a30f8f8cSSatish Balay }
1572a30f8f8cSSatish Balay 
157366976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1574d71ae5a4SJacob Faibussowitsch {
1575a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1576a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
15775e90f9d9SHong Zhang   PetscInt      nv, m, n;
1578a30f8f8cSSatish Balay 
1579a30f8f8cSSatish Balay   PetscFunctionBegin;
15803ba16761SJacob Faibussowitsch   if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1581b3bf805bSHong Zhang 
15829566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
15835f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1584b3bf805bSHong Zhang 
15859566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
15865f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
15875e90f9d9SHong Zhang 
15889566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
15895e90f9d9SHong Zhang 
15905e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1591dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15925e90f9d9SHong Zhang 
15935e90f9d9SHong Zhang   /* scale the diagonal part */
1594dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1595a30f8f8cSSatish Balay 
15965e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
15979566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1598dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
15993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1600a30f8f8cSSatish Balay }
1601a30f8f8cSSatish Balay 
160266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1603d71ae5a4SJacob Faibussowitsch {
1604f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1605a30f8f8cSSatish Balay 
1606a30f8f8cSSatish Balay   PetscFunctionBegin;
16079566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
16083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1609a30f8f8cSSatish Balay }
1610a30f8f8cSSatish Balay 
16116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1612a30f8f8cSSatish Balay 
161366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1614d71ae5a4SJacob Faibussowitsch {
1615a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1616a30f8f8cSSatish Balay   Mat           a, b, c, d;
1617ace3abfcSBarry Smith   PetscBool     flg;
1618a30f8f8cSSatish Balay 
1619a30f8f8cSSatish Balay   PetscFunctionBegin;
16209371c9d4SSatish Balay   a = matA->A;
16219371c9d4SSatish Balay   b = matA->B;
16229371c9d4SSatish Balay   c = matB->A;
16239371c9d4SSatish Balay   d = matB->B;
1624a30f8f8cSSatish Balay 
16259566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
162648a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
16275440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1629a30f8f8cSSatish Balay }
1630a30f8f8cSSatish Balay 
163166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1632d71ae5a4SJacob Faibussowitsch {
16334c7a3774SStefano Zampini   PetscBool isbaij;
16343c896bc6SHong Zhang 
16353c896bc6SHong Zhang   PetscFunctionBegin;
16369566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16375f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16383c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16393c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16409566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16419566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
16429566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16433c896bc6SHong Zhang   } else {
16444c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16454c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16464c7a3774SStefano Zampini 
16479566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
16489566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
16493c896bc6SHong Zhang   }
16509566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16523c896bc6SHong Zhang }
16533c896bc6SHong Zhang 
165466976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1655d71ae5a4SJacob Faibussowitsch {
16564fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16574fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
16584fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
16594fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
16604fe895cdSHong Zhang 
16614fe895cdSHong Zhang   PetscFunctionBegin;
16624fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16634fe895cdSHong Zhang     PetscScalar alpha = a;
16644fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
16654fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
16669566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1667792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
16684fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
16694fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
16709566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1671792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
16729566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1673ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
16759566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
16769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
16774fe895cdSHong Zhang   } else {
16784de5dceeSHong Zhang     Mat       B;
16794de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
16805f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
16819566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16829566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
16849566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
16859566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
16869566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
16879566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
16889566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
16899566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
16909566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
16919566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
16929566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
16939566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
16949566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
16959566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
16969566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
16979566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
16989566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
16994fe895cdSHong Zhang   }
17003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17014fe895cdSHong Zhang }
17024fe895cdSHong Zhang 
170366976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1704d71ae5a4SJacob Faibussowitsch {
17051302d50aSBarry Smith   PetscInt  i;
1706afebec48SHong Zhang   PetscBool flg;
1707a5e6ed63SBarry Smith 
17086849ba73SBarry Smith   PetscFunctionBegin;
17099566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1710a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
17119566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
171248a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17134dcd73b1SHong Zhang   }
17143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1715a5e6ed63SBarry Smith }
1716a5e6ed63SBarry Smith 
171766976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1718d71ae5a4SJacob Faibussowitsch {
17197d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17206f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
17217d68702bSBarry Smith 
17227d68702bSBarry Smith   PetscFunctionBegin;
17236f33a894SBarry Smith   if (!Y->preallocated) {
17249566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17256f33a894SBarry Smith   } else if (!aij->nz) {
1726b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17279566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1728b83222d8SBarry Smith     aij->nonew = nonew;
17297d68702bSBarry Smith   }
17309566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17327d68702bSBarry Smith }
17337d68702bSBarry Smith 
173466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1735d71ae5a4SJacob Faibussowitsch {
1736a5b7ff6bSBarry Smith   PetscFunctionBegin;
1737a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
17383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1739a5b7ff6bSBarry Smith }
17403b49f96aSBarry Smith 
174117ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
174217ea310bSPierre Jolivet {
174317ea310bSPierre Jolivet   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
174417ea310bSPierre Jolivet 
174517ea310bSPierre Jolivet   PetscFunctionBegin;
174617ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep));       // possibly keep zero diagonal coefficients
174717ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
174817ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
174917ea310bSPierre Jolivet }
175017ea310bSPierre Jolivet 
17516cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer);
1752789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]);
1753789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
17546cff0a6bSPierre Jolivet 
17553964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1756a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1757a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1758a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
175997304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1760431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1761431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1762f4259b30SLisandro Dalcin                                        NULL,
1763f4259b30SLisandro Dalcin                                        NULL,
1764f4259b30SLisandro Dalcin                                        NULL,
1765f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1766f4259b30SLisandro Dalcin                                        NULL,
1767f4259b30SLisandro Dalcin                                        NULL,
176841f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1769a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
177097304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1771a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1772a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1773a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1774a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
177597304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1776a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1777a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1778a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1779f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1780f4259b30SLisandro Dalcin                                        NULL,
1781f4259b30SLisandro Dalcin                                        NULL,
1782f4259b30SLisandro Dalcin                                        NULL,
1783f4259b30SLisandro Dalcin                                        NULL,
178426cec326SBarry Smith                                        /* 29*/ MatSetUp_MPI_Hash,
1785f4259b30SLisandro Dalcin                                        NULL,
1786f4259b30SLisandro Dalcin                                        NULL,
1787a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1788f4259b30SLisandro Dalcin                                        NULL,
1789d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1790f4259b30SLisandro Dalcin                                        NULL,
1791f4259b30SLisandro Dalcin                                        NULL,
1792f4259b30SLisandro Dalcin                                        NULL,
1793f4259b30SLisandro Dalcin                                        NULL,
1794d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
17957dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1796d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1797a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
17983c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1799f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1800a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18017d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1802f4259b30SLisandro Dalcin                                        NULL,
1803f4259b30SLisandro Dalcin                                        NULL,
1804f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1805f4259b30SLisandro Dalcin                                        NULL,
1806f4259b30SLisandro Dalcin                                        NULL,
1807f4259b30SLisandro Dalcin                                        NULL,
1808f4259b30SLisandro Dalcin                                        NULL,
1809f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1812f4259b30SLisandro Dalcin                                        NULL,
1813a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18147dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1815f4259b30SLisandro Dalcin                                        NULL,
1816f4259b30SLisandro Dalcin                                        NULL,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        NULL,
1819f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1820f4259b30SLisandro Dalcin                                        NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                        NULL,
18238bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPISBAIJ,
18248bb0f5c6SPierre Jolivet                                        /* 69*/ NULL,
182528d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1826f4259b30SLisandro Dalcin                                        NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        NULL,
1831f4259b30SLisandro Dalcin                                        NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
18335bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
18348bb0f5c6SPierre Jolivet                                        /* 79*/ NULL,
18358bb0f5c6SPierre Jolivet                                        NULL,
18368bb0f5c6SPierre Jolivet                                        NULL,
18378bb0f5c6SPierre Jolivet                                        NULL,
18388bb0f5c6SPierre Jolivet                                        NULL,
1839f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
1844f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        NULL,
1847f4259b30SLisandro Dalcin                                        NULL,
18488bb0f5c6SPierre Jolivet                                        MatConjugate_MPISBAIJ,
1849f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1850f4259b30SLisandro Dalcin                                        NULL,
185199cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1852d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1853d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
18548bb0f5c6SPierre Jolivet                                        /* 99*/ MatRestoreRowUpperTriangular_MPISBAIJ,
18558bb0f5c6SPierre Jolivet                                        NULL,
18568bb0f5c6SPierre Jolivet                                        NULL,
18578bb0f5c6SPierre Jolivet                                        NULL,
18588bb0f5c6SPierre Jolivet                                        NULL,
1859421480d9SBarry Smith                                        /*104*/ NULL,
18608bb0f5c6SPierre Jolivet                                        NULL,
18618bb0f5c6SPierre Jolivet                                        NULL,
18628bb0f5c6SPierre Jolivet                                        NULL,
18638bb0f5c6SPierre Jolivet                                        NULL,
1864f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
18688bb0f5c6SPierre Jolivet                                        NULL,
1869f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
18818bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_Default,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884421480d9SBarry Smith                                        /*129*/ NULL,
18858bb0f5c6SPierre Jolivet                                        MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                        NULL,
1888421480d9SBarry Smith                                        NULL,
1889f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891eede4a3fSMark Adams                                        MatEliminateZeros_MPISBAIJ,
18924cc2b5b5SPierre Jolivet                                        NULL,
189342ce410bSJunchao Zhang                                        NULL,
1894421480d9SBarry Smith                                        /*139*/ NULL,
189542ce410bSJunchao Zhang                                        NULL,
189603db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
1897c2be7ffeSStefano Zampini                                        NULL,
189803db1824SAlex Lindsay                                        NULL};
1899a30f8f8cSSatish Balay 
190066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1901d71ae5a4SJacob Faibussowitsch {
1902476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1903535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
19045d2a9ed1SStefano Zampini   PetscMPIInt   size;
1905a23d5eceSKris Buschelman 
1906a23d5eceSKris Buschelman   PetscFunctionBegin;
1907ad79cf63SBarry Smith   if (B->hash_active) {
1908aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
1909ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
1910ad79cf63SBarry Smith   }
1911ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
191258b7e2c1SStefano Zampini   PetscCall(MatSetBlockSize(B, bs));
19139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19149566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19159566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19165f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19175f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1918899cda47SBarry Smith 
1919d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1920d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
19215f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1922a23d5eceSKris Buschelman 
1923d0f46423SBarry Smith   B->rmap->bs = bs;
1924a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1925a23d5eceSKris Buschelman   b->mbs      = mbs;
1926a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1927de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1928de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1929a23d5eceSKris Buschelman 
1930ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1931d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1932d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1933a23d5eceSKris Buschelman 
1934d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1935d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1936a23d5eceSKris Buschelman 
1937cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1938eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
1939cb7b82ddSBarry Smith #else
19409566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1941cb7b82ddSBarry Smith #endif
19429566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
19439566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
19449566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
19459566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
19469566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
19479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
19489566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
19499566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
19509566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1951cb7b82ddSBarry Smith 
19529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
1953c508b908SBarry Smith 
1954c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
19559566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19569566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
19579566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
19589566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
1959c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
1960cb7b82ddSBarry Smith 
1961c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
1962ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
19639566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
19649566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
19659566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQSBAIJ));
1966c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
1967a23d5eceSKris Buschelman 
19689566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
19699566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
197026fbe8dcSKarl Rupp 
1971526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
1972cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
1973cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
19743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1975a23d5eceSKris Buschelman }
1976a23d5eceSKris Buschelman 
197766976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
1978d71ae5a4SJacob Faibussowitsch {
197902106b30SBarry Smith   PetscInt        m, rstart, cend;
1980f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
1981f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
1982f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
1983bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
19843bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
1985dfb205c3SBarry Smith 
1986dfb205c3SBarry Smith   PetscFunctionBegin;
19875f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
19889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
19899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
19909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
1993dfb205c3SBarry Smith   m      = B->rmap->n / bs;
1994dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
1995dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
1996dfb205c3SBarry Smith 
19975f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
19989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
1999dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2000dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
20015f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20024cf0e950SBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */
2003dfb205c3SBarry Smith     JJ = jj + ii[i];
20040cd7f59aSBarry Smith     bd = 0;
2005dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
20060cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2007dfb205c3SBarry Smith       JJ++;
20080cd7f59aSBarry Smith       bd++;
2009dfb205c3SBarry Smith     }
2010dfb205c3SBarry Smith     d = 0;
2011dfb205c3SBarry Smith     for (; j < nz; j++) {
2012dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2013dfb205c3SBarry Smith       d++;
2014dfb205c3SBarry Smith     }
2015dfb205c3SBarry Smith     d_nnz[i] = d;
20160cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20170cd7f59aSBarry Smith     nz       = nz - bd;
20180cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
2019dfb205c3SBarry Smith   }
20209566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20219566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20229566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2023dfb205c3SBarry Smith 
2024dfb205c3SBarry Smith   values = (PetscScalar *)V;
202548a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2026dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2027dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
2028dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2029dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
2030bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2031dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
20329566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2033bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
2034bb80cfbbSStefano Zampini       PetscInt j;
20350cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
20360cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
20379566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
20380cd7f59aSBarry Smith       }
20390cd7f59aSBarry Smith     }
2040dfb205c3SBarry Smith   }
2041dfb205c3SBarry Smith 
20429566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
20433bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20443bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
20459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
20469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
20473bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20483bd0feecSPierre Jolivet 
20499566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
20503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2051dfb205c3SBarry Smith }
2052dfb205c3SBarry Smith 
20530bad9183SKris Buschelman /*MC
2054fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2055828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2056828413b8SBarry Smith    the matrix is stored.
2057828413b8SBarry Smith 
2058828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
205911a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
20600bad9183SKris Buschelman 
20612ef1f0ffSBarry Smith    Options Database Key:
206211a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
20630bad9183SKris Buschelman 
20642ef1f0ffSBarry Smith    Level: beginner
20652ef1f0ffSBarry Smith 
206611a5261eSBarry Smith    Note:
2067476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2068476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2069476417e5SBarry Smith 
20701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
20710bad9183SKris Buschelman M*/
20720bad9183SKris Buschelman 
2073d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2074d71ae5a4SJacob Faibussowitsch {
2075b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
207694ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2077b5df2d14SHong Zhang 
2078b5df2d14SHong Zhang   PetscFunctionBegin;
20794dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2080b0a32e0cSBarry Smith   B->data   = (void *)b;
2081aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2082b5df2d14SHong Zhang 
2083b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2084b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2085b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2086b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
208726fbe8dcSKarl Rupp 
20889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
20899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2090b5df2d14SHong Zhang 
2091b5df2d14SHong Zhang   /* build local table of row and column ownerships */
20929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2093b5df2d14SHong Zhang 
2094b5df2d14SHong Zhang   /* build cache for off array entries formed */
20959566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
209626fbe8dcSKarl Rupp 
2097b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20980298fd71SBarry Smith   b->colmap      = NULL;
20990298fd71SBarry Smith   b->garray      = NULL;
2100b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2101b5df2d14SHong Zhang 
2102b5df2d14SHong Zhang   /* stuff used in block assembly */
2103f4259b30SLisandro Dalcin   b->barray = NULL;
2104b5df2d14SHong Zhang 
2105b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2106f4259b30SLisandro Dalcin   b->lvec    = NULL;
2107f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2108f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2109f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2110f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2111f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2112f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2113f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2114b5df2d14SHong Zhang 
2115b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2116f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2117f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2118b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2119b5df2d14SHong Zhang 
2120b5df2d14SHong Zhang   /* hash table stuff */
2121f4259b30SLisandro Dalcin   b->ht           = NULL;
2122f4259b30SLisandro Dalcin   b->hd           = NULL;
2123b5df2d14SHong Zhang   b->ht_size      = 0;
2124b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2125b5df2d14SHong Zhang   b->ht_fact      = 0;
2126b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2127b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2128b5df2d14SHong Zhang 
21297dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21307a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21317a868f3eSHong Zhang 
2132f4259b30SLisandro Dalcin   b->in_loc = NULL;
2133f4259b30SLisandro Dalcin   b->v_loc  = NULL;
213459ffdab8SBarry Smith   b->n_loc  = 0;
213594ae4db5SBarry Smith 
21369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
21379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
21389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
21399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21406214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
21426214f412SHong Zhang #endif
2143d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
21449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2145d24d4204SJose E. Roman #endif
21469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
21479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2148aa5a9175SDahai Guo 
2149b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2150b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2151b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2152b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2153b0c98d1dSPierre Jolivet #if !defined(PETSC_USE_COMPLEX)
2154b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2155eb1ec7c1SStefano Zampini #endif
215613647f61SHong Zhang 
21579566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2158d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
21599566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
216094ae4db5SBarry Smith   if (flg) {
216194ae4db5SBarry Smith     PetscReal fact = 1.39;
21629566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
21639566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
216494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
21659566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
21669566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
216794ae4db5SBarry Smith   }
2168d0609cedSBarry Smith   PetscOptionsEnd();
21693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2170b5df2d14SHong Zhang }
2171b5df2d14SHong Zhang 
21722920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2173209238afSKris Buschelman /*MC
2174002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2175209238afSKris Buschelman 
217611a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
217711a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2178209238afSKris Buschelman 
217911a5261eSBarry Smith    Options Database Key:
2180c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2181209238afSKris Buschelman 
2182209238afSKris Buschelman   Level: beginner
2183209238afSKris Buschelman 
21841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2185209238afSKris Buschelman M*/
2186209238afSKris Buschelman 
21875d83a8b1SBarry Smith /*@
2188b5df2d14SHong Zhang   MatMPISBAIJSetPreallocation - For good matrix assembly performance
2189b5df2d14SHong Zhang   the user should preallocate the matrix storage by setting the parameters
2190b5df2d14SHong Zhang   d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2191b5df2d14SHong Zhang   performance can be increased by more than a factor of 50.
2192b5df2d14SHong Zhang 
2193c3339decSBarry Smith   Collective
2194b5df2d14SHong Zhang 
2195b5df2d14SHong Zhang   Input Parameters:
21961c4f3114SJed Brown + B     - the matrix
2197bb7ae925SBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2198bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2199b5df2d14SHong Zhang . d_nz  - number of block nonzeros per block row in diagonal portion of local
2200b5df2d14SHong Zhang           submatrix  (same for all local rows)
2201b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22026d10fdaeSSatish Balay           in the upper triangular and diagonal part of the in diagonal portion of the local
22032ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.  If you plan to factor the matrix you must leave room
220495742e49SBarry Smith           for the diagonal entry and set a value even if it is zero.
2205b5df2d14SHong Zhang . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2206b5df2d14SHong Zhang           submatrix (same for all local rows).
2207b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2208c2fc9fa9SBarry Smith           off-diagonal portion of the local submatrix that is right of the diagonal
22092ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.
2210b5df2d14SHong Zhang 
2211b5df2d14SHong Zhang   Options Database Keys:
2212a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2213b5df2d14SHong Zhang                     block calculations (much slower)
2214a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2215b5df2d14SHong Zhang 
22162ef1f0ffSBarry Smith   Level: intermediate
22172ef1f0ffSBarry Smith 
2218b5df2d14SHong Zhang   Notes:
2219b5df2d14SHong Zhang 
222011a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2221b5df2d14SHong Zhang   than it must be used on all processors that share the object for that argument.
2222b5df2d14SHong Zhang 
222349a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
222449a6f317SBarry Smith 
2225b5df2d14SHong Zhang   Storage Information:
2226b5df2d14SHong Zhang   For a square global matrix we define each processor's diagonal portion
2227b5df2d14SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
2228b5df2d14SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
2229b5df2d14SHong Zhang   local matrix (a rectangular submatrix).
2230b5df2d14SHong Zhang 
2231b5df2d14SHong Zhang   The user can specify preallocated storage for the diagonal part of
22322ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
22332ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2234b5df2d14SHong Zhang   memory allocation.  Likewise, specify preallocated storage for the
22352ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2236b5df2d14SHong Zhang 
223711a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
2238aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
22392ef1f0ffSBarry Smith   You can also run with the option `-info` and look for messages with the string
2240aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
2241aa95bbe8SBarry Smith 
2242b5df2d14SHong Zhang   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2243b5df2d14SHong Zhang   the figure below we depict these three local rows and all columns (0-11).
2244b5df2d14SHong Zhang 
2245b5df2d14SHong Zhang .vb
2246b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2247a4b1a0f6SJed Brown           --------------------------
2248c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2249c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2250c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2251a4b1a0f6SJed Brown           --------------------------
2252b5df2d14SHong Zhang .ve
2253b5df2d14SHong Zhang 
2254b5df2d14SHong Zhang   Thus, any entries in the d locations are stored in the d (diagonal)
2255b5df2d14SHong Zhang   submatrix, and any entries in the o locations are stored in the
22566d10fdaeSSatish Balay   o (off-diagonal) submatrix.  Note that the d matrix is stored in
225711a5261eSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2258b5df2d14SHong Zhang 
22592ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
22606d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
22612ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2262c2fc9fa9SBarry Smith 
2263b5df2d14SHong Zhang   In general, for PDE problems in which most nonzeros are near the diagonal,
22642ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2265b5df2d14SHong Zhang 
22661cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2267b5df2d14SHong Zhang @*/
2268d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2269d71ae5a4SJacob Faibussowitsch {
2270b5df2d14SHong Zhang   PetscFunctionBegin;
22716ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
22726ba663aaSJed Brown   PetscValidType(B, 1);
22736ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2274cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
22753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2276b5df2d14SHong Zhang }
2277b5df2d14SHong Zhang 
22782920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
22795d83a8b1SBarry Smith /*@
228011a5261eSBarry Smith   MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2281a30f8f8cSSatish Balay   (block compressed row).  For good matrix assembly performance
2282a30f8f8cSSatish Balay   the user should preallocate the matrix storage by setting the parameters
228320f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2284a30f8f8cSSatish Balay 
2285d083f849SBarry Smith   Collective
2286a30f8f8cSSatish Balay 
2287a30f8f8cSSatish Balay   Input Parameters:
2288a30f8f8cSSatish Balay + comm  - MPI communicator
228911a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
229020f4b53cSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
229120f4b53cSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2292a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2293a30f8f8cSSatish Balay           y vector for the matrix-vector product y = Ax.
229420f4b53cSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2295a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2296a30f8f8cSSatish Balay           x vector for the matrix-vector product y = Ax.
229720f4b53cSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
229820f4b53cSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2299a30f8f8cSSatish Balay . d_nz  - number of block nonzeros per block row in diagonal portion of local
2300a30f8f8cSSatish Balay           submatrix (same for all local rows)
2301a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23026d10fdaeSSatish Balay           in the upper triangular portion of the in diagonal portion of the local
23032ef1f0ffSBarry Smith           (possibly different for each block block row) or `NULL`.
230495742e49SBarry Smith           If you plan to factor the matrix you must leave room for the diagonal entry and
230595742e49SBarry Smith           set its value even if it is zero.
2306a30f8f8cSSatish Balay . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2307a30f8f8cSSatish Balay           submatrix (same for all local rows).
2308a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2309a30f8f8cSSatish Balay           off-diagonal portion of the local submatrix (possibly different for
23102ef1f0ffSBarry Smith           each block row) or `NULL`.
2311a30f8f8cSSatish Balay 
2312a30f8f8cSSatish Balay   Output Parameter:
2313a30f8f8cSSatish Balay . A - the matrix
2314a30f8f8cSSatish Balay 
2315a30f8f8cSSatish Balay   Options Database Keys:
2316a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2317a30f8f8cSSatish Balay                     block calculations (much slower)
2318a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2319a2b725a8SWilliam Gropp - -mat_mpi        - use the parallel matrix data structures even on one processor
2320a30f8f8cSSatish Balay                     (defaults to using SeqBAIJ format on one processor)
2321a30f8f8cSSatish Balay 
23222ef1f0ffSBarry Smith   Level: intermediate
23232ef1f0ffSBarry Smith 
23242ef1f0ffSBarry Smith   Notes:
232577433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2326f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
232711a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2328175b88e8SBarry Smith 
2329d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
23306d6d819aSHong Zhang   This matrix type does not support complex Hermitian operation.
2331d1be2dadSMatthew Knepley 
2332a30f8f8cSSatish Balay   The user MUST specify either the local or global matrix dimensions
2333a30f8f8cSSatish Balay   (possibly both).
2334a30f8f8cSSatish Balay 
233511a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2336a30f8f8cSSatish Balay   than it must be used on all processors that share the object for that argument.
2337a30f8f8cSSatish Balay 
2338727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by
2339727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
2340727bdf9bSBarry Smith 
234149a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
234249a6f317SBarry Smith 
2343a30f8f8cSSatish Balay   Storage Information:
2344a30f8f8cSSatish Balay   For a square global matrix we define each processor's diagonal portion
2345a30f8f8cSSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
2346a30f8f8cSSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
2347a30f8f8cSSatish Balay   local matrix (a rectangular submatrix).
2348a30f8f8cSSatish Balay 
2349a30f8f8cSSatish Balay   The user can specify preallocated storage for the diagonal part of
23502ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both). Set
23512ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2352a30f8f8cSSatish Balay   memory allocation. Likewise, specify preallocated storage for the
23532ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2354a30f8f8cSSatish Balay 
2355a30f8f8cSSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2356a30f8f8cSSatish Balay   the figure below we depict these three local rows and all columns (0-11).
2357a30f8f8cSSatish Balay 
2358a30f8f8cSSatish Balay .vb
2359a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2360a4b1a0f6SJed Brown           --------------------------
2361c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2362c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2363c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2364a4b1a0f6SJed Brown           --------------------------
2365a30f8f8cSSatish Balay .ve
2366a30f8f8cSSatish Balay 
2367a30f8f8cSSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
2368a30f8f8cSSatish Balay   submatrix, and any entries in the o locations are stored in the
23696d10fdaeSSatish Balay   o (off-diagonal) submatrix. Note that the d matrix is stored in
23702ef1f0ffSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2371a30f8f8cSSatish Balay 
23722ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
23736d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
23742ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2375a30f8f8cSSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
23762ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2377a30f8f8cSSatish Balay 
2378727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`,
2379727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
2380a30f8f8cSSatish Balay @*/
2381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2382d71ae5a4SJacob Faibussowitsch {
23831302d50aSBarry Smith   PetscMPIInt size;
2384a30f8f8cSSatish Balay 
2385a30f8f8cSSatish Balay   PetscFunctionBegin;
23869566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
23879566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
23889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2389273d9f13SBarry Smith   if (size > 1) {
23909566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
23919566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2392273d9f13SBarry Smith   } else {
23939566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
23949566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2395273d9f13SBarry Smith   }
23963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2397a30f8f8cSSatish Balay }
2398a30f8f8cSSatish Balay 
2399d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2400d71ae5a4SJacob Faibussowitsch {
2401a30f8f8cSSatish Balay   Mat           mat;
2402a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2403d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2404387bc808SHong Zhang   PetscScalar  *array;
2405a30f8f8cSSatish Balay 
2406a30f8f8cSSatish Balay   PetscFunctionBegin;
2407f4259b30SLisandro Dalcin   *newmat = NULL;
240826fbe8dcSKarl Rupp 
24099566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24109566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24119566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2414e1b6402fSHong Zhang 
2415420957c1SBarry Smith   if (matin->hash_active) {
2416420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2417420957c1SBarry Smith   } else {
2418d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
2419273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
242082327fa8SHong Zhang     mat->assembled    = PETSC_TRUE;
24217fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
24227fff6886SHong Zhang 
2423b5df2d14SHong Zhang     a      = (Mat_MPISBAIJ *)mat->data;
2424a30f8f8cSSatish Balay     a->bs2 = oldmat->bs2;
2425a30f8f8cSSatish Balay     a->mbs = oldmat->mbs;
2426a30f8f8cSSatish Balay     a->nbs = oldmat->nbs;
2427a30f8f8cSSatish Balay     a->Mbs = oldmat->Mbs;
2428a30f8f8cSSatish Balay     a->Nbs = oldmat->Nbs;
2429a30f8f8cSSatish Balay 
2430a30f8f8cSSatish Balay     a->size         = oldmat->size;
2431a30f8f8cSSatish Balay     a->rank         = oldmat->rank;
2432a30f8f8cSSatish Balay     a->donotstash   = oldmat->donotstash;
2433a30f8f8cSSatish Balay     a->roworiented  = oldmat->roworiented;
2434f4259b30SLisandro Dalcin     a->rowindices   = NULL;
2435f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
2436a30f8f8cSSatish Balay     a->getrowactive = PETSC_FALSE;
2437f4259b30SLisandro Dalcin     a->barray       = NULL;
2438899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
2439899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
2440899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
2441899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
2442a30f8f8cSSatish Balay 
2443a30f8f8cSSatish Balay     /* hash table stuff */
2444f4259b30SLisandro Dalcin     a->ht           = NULL;
2445f4259b30SLisandro Dalcin     a->hd           = NULL;
2446a30f8f8cSSatish Balay     a->ht_size      = 0;
2447a30f8f8cSSatish Balay     a->ht_flag      = oldmat->ht_flag;
2448a30f8f8cSSatish Balay     a->ht_fact      = oldmat->ht_fact;
2449a30f8f8cSSatish Balay     a->ht_total_ct  = 0;
2450a30f8f8cSSatish Balay     a->ht_insert_ct = 0;
2451a30f8f8cSSatish Balay 
24529566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2453a30f8f8cSSatish Balay     if (oldmat->colmap) {
2454a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2455eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2456a30f8f8cSSatish Balay #else
24579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
24589566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2459a30f8f8cSSatish Balay #endif
2460f4259b30SLisandro Dalcin     } else a->colmap = NULL;
2461387bc808SHong Zhang 
2462f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
24639566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
24649566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2465f4259b30SLisandro Dalcin     } else a->garray = NULL;
2466a30f8f8cSSatish Balay 
24679566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
24689566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
24699566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
247082327fa8SHong Zhang 
24719566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
24729566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2473387bc808SHong Zhang 
24749566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(a->slvec1, &nt));
24759566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec1, &array));
24769566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
24779566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
24789566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec1, &array));
24799566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec0, &array));
24809566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
24819566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec0, &array));
2482387bc808SHong Zhang 
2483387bc808SHong Zhang     /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
24849566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2485387bc808SHong Zhang     a->sMvctx = oldmat->sMvctx;
248682327fa8SHong Zhang 
24879566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
24889566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
2489420957c1SBarry Smith   }
24909566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2491a30f8f8cSSatish Balay   *newmat = mat;
24923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2493a30f8f8cSSatish Balay }
2494a30f8f8cSSatish Balay 
2495618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2496618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2497618cc2edSLisandro Dalcin 
24986cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2499d71ae5a4SJacob Faibussowitsch {
25007f489da9SVaclav Hapla   PetscBool isbinary;
250195936485SShri Abhyankar 
250295936485SShri Abhyankar   PetscFunctionBegin;
25039566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25045f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25059566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
250795936485SShri Abhyankar }
250895936485SShri Abhyankar 
2509789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2510d71ae5a4SJacob Faibussowitsch {
251124d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2512f4f49eeaSPierre Jolivet   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)a->B->data;
2513ca54ac64SHong Zhang   PetscReal     atmp;
251487828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
25151302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25161302d50aSBarry Smith   PetscMPIInt   rank, size;
25176497c311SBarry Smith   PetscInt     *rowners_bs, count, source;
251887828ca2SBarry Smith   PetscScalar  *va;
25198a1c53f2SBarry Smith   MatScalar    *ba;
2520f4c0e9e4SHong Zhang   MPI_Status    stat;
252124d5174aSHong Zhang 
252224d5174aSHong Zhang   PetscFunctionBegin;
25235f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25249566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25259566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2526f4c0e9e4SHong Zhang 
25279566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2529f4c0e9e4SHong Zhang 
2530d0f46423SBarry Smith   bs  = A->rmap->bs;
2531f4c0e9e4SHong Zhang   mbs = a->mbs;
2532f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2533f4c0e9e4SHong Zhang   ba  = b->a;
2534f4c0e9e4SHong Zhang   bi  = b->i;
2535f4c0e9e4SHong Zhang   bj  = b->j;
2536f4c0e9e4SHong Zhang 
2537f4c0e9e4SHong Zhang   /* find ownerships */
2538d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2539f4c0e9e4SHong Zhang 
2540f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25419566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2542f4c0e9e4SHong Zhang 
2543f4c0e9e4SHong Zhang   /* row_max for B */
2544b8475685SHong Zhang   if (rank != size - 1) {
2545f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
25469371c9d4SSatish Balay       ncols = bi[1] - bi[0];
25479371c9d4SSatish Balay       bi++;
2548f4c0e9e4SHong Zhang       brow = bs * i;
2549f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2550f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2551f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2552ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
255304d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2554f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
25559371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
25569371c9d4SSatish Balay             ba++;
2557ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2558ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2559f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2560f4c0e9e4SHong Zhang           }
2561f4c0e9e4SHong Zhang         }
2562f4c0e9e4SHong Zhang         bj++;
2563f4c0e9e4SHong Zhang       }
2564f4c0e9e4SHong Zhang     }
2565f4c0e9e4SHong Zhang 
2566f4c0e9e4SHong Zhang     /* send values to its owners */
25676497c311SBarry Smith     for (PetscMPIInt dest = rank + 1; dest < size; dest++) {
2568f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2569ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
25706497c311SBarry Smith       PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2571ca54ac64SHong Zhang     }
2572f4c0e9e4SHong Zhang   }
2573f4c0e9e4SHong Zhang 
2574f4c0e9e4SHong Zhang   /* receive values */
2575ca54ac64SHong Zhang   if (rank) {
2576f4c0e9e4SHong Zhang     rvalues = work;
2577ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2578f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
25796497c311SBarry Smith       PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2580f4c0e9e4SHong Zhang       /* process values */
2581f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2582ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2583f4c0e9e4SHong Zhang       }
2584f4c0e9e4SHong Zhang     }
2585ca54ac64SHong Zhang   }
2586f4c0e9e4SHong Zhang 
25879566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
25889566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
25893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
259024d5174aSHong Zhang }
25912798e883SHong Zhang 
2592789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2593d71ae5a4SJacob Faibussowitsch {
25942798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2595d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
25963649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2597ffe4fb16SHong Zhang   Vec                bb1;
25983649974fSBarry Smith   const PetscScalar *b;
2599ffe4fb16SHong Zhang 
2600ffe4fb16SHong Zhang   PetscFunctionBegin;
26015f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26025f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2603ffe4fb16SHong Zhang 
2604a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26059566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26063ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2607a2b30743SBarry Smith   }
2608a2b30743SBarry Smith 
2609ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2610ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26119566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2612ffe4fb16SHong Zhang       its--;
2613ffe4fb16SHong Zhang     }
2614ffe4fb16SHong Zhang 
26159566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2616ffe4fb16SHong Zhang     while (its--) {
2617ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26189566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2619ffe4fb16SHong Zhang 
2620ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26219566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
26229566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26239566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26249566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2625ffe4fb16SHong Zhang 
26269566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2627ffe4fb16SHong Zhang 
2628ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26299566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
26309566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26319566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26329566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2633ffe4fb16SHong Zhang 
2634ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2635629a200eSBarry Smith       PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2636629a200eSBarry Smith       PetscCall(VecZeroEntries(mat->slvec1b));
2637ffe4fb16SHong Zhang 
26389566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26399566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
26409566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26419566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2642ffe4fb16SHong Zhang 
2643ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26449566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2645ffe4fb16SHong Zhang 
2646ffe4fb16SHong Zhang       /* local diagonal sweep */
26479566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2648ffe4fb16SHong Zhang     }
26499566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2650fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26519566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2652fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26539566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2654fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2655fa22f6d0SBarry Smith     Vec                xx1;
2656ace3abfcSBarry Smith     PetscBool          hasop;
265720f1ed55SBarry Smith     const PetscScalar *diag;
2658887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
265920f1ed55SBarry Smith     PetscInt           i, n;
2660fa22f6d0SBarry Smith 
2661fa22f6d0SBarry Smith     if (!mat->xx1) {
26629566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
26639566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2664fa22f6d0SBarry Smith     }
2665fa22f6d0SBarry Smith     xx1 = mat->xx1;
2666fa22f6d0SBarry Smith     bb1 = mat->bb1;
2667fa22f6d0SBarry Smith 
26689566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2669fa22f6d0SBarry Smith 
2670fa22f6d0SBarry Smith     if (!mat->diag) {
2671effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26729566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
26739566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2674fa22f6d0SBarry Smith     }
26759566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2676fa22f6d0SBarry Smith 
2677fa22f6d0SBarry Smith     if (hasop) {
26789566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
26799566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
268020f1ed55SBarry Smith     } else {
268120f1ed55SBarry Smith       /*
268220f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
26839566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
26849566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
268520f1ed55SBarry Smith       */
26869566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
26879566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
26889566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26899566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26909566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2691887ee2caSBarry Smith       if (omega == 1.0) {
269226fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
26939566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2694887ee2caSBarry Smith       } else {
269526fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
26969566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2697887ee2caSBarry Smith       }
26989566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
26999566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
27009566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27019566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
270220f1ed55SBarry Smith     }
2703fa22f6d0SBarry Smith 
2704fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2705629a200eSBarry Smith     PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2706629a200eSBarry Smith     PetscCall(VecZeroEntries(mat->slvec1b));
27079566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27089566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
27099566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
27109566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
27119566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
27129566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
27139566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27149566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27159566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2716fa22f6d0SBarry Smith 
2717fa22f6d0SBarry Smith     /* local sweep */
27189566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27199566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2720f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2722ffe4fb16SHong Zhang }
2723ffe4fb16SHong Zhang 
2724dfb205c3SBarry Smith /*@
2725d8a51d2aSBarry Smith   MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows.
2726dfb205c3SBarry Smith 
2727d083f849SBarry Smith   Collective
2728dfb205c3SBarry Smith 
2729dfb205c3SBarry Smith   Input Parameters:
2730dfb205c3SBarry Smith + comm - MPI communicator
2731dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
273211a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
2733dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
2734d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
27352ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
27362ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
27372ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2738483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2739dfb205c3SBarry Smith . j    - column indices
2740dfb205c3SBarry Smith - a    - matrix values
2741dfb205c3SBarry Smith 
2742dfb205c3SBarry Smith   Output Parameter:
2743dfb205c3SBarry Smith . mat - the matrix
2744dfb205c3SBarry Smith 
2745dfb205c3SBarry Smith   Level: intermediate
2746dfb205c3SBarry Smith 
2747dfb205c3SBarry Smith   Notes:
27482ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
27492ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `a` after you have
27502ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2751dfb205c3SBarry Smith 
27522ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2753dfb205c3SBarry Smith 
27541cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2755d8a51d2aSBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()`
2756dfb205c3SBarry Smith @*/
2757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2758d71ae5a4SJacob Faibussowitsch {
2759dfb205c3SBarry Smith   PetscFunctionBegin;
27605f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
27615f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
27629566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
27639566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
27649566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
27659566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
27663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2767dfb205c3SBarry Smith }
2768dfb205c3SBarry Smith 
27695d83a8b1SBarry Smith /*@
277011a5261eSBarry Smith   MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2771dfb205c3SBarry Smith 
2772d083f849SBarry Smith   Collective
2773dfb205c3SBarry Smith 
2774dfb205c3SBarry Smith   Input Parameters:
27751c4f3114SJed Brown + B  - the matrix
2776dfb205c3SBarry Smith . bs - the block size
2777d8a51d2aSBarry Smith . i  - the indices into `j` for the start of each local row (indices start with zero)
2778d8a51d2aSBarry Smith . j  - the column indices for each local row (indices start with zero) these must be sorted for each row
2779d8a51d2aSBarry Smith - v  - optional values in the matrix, pass `NULL` if not provided
2780dfb205c3SBarry Smith 
2781664954b6SBarry Smith   Level: advanced
2782664954b6SBarry Smith 
2783664954b6SBarry Smith   Notes:
2784d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2785d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2786d8a51d2aSBarry Smith   called this routine.
2787d8a51d2aSBarry Smith 
27880cd7f59aSBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
27890cd7f59aSBarry Smith   and usually the numerical values as well
27900cd7f59aSBarry Smith 
2791d8a51d2aSBarry Smith   Any entries passed in that are below the diagonal are ignored
2792dfb205c3SBarry Smith 
2793d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`,
2794d8a51d2aSBarry Smith           `MatCreateMPISBAIJWithArrays()`
2795dfb205c3SBarry Smith @*/
2796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2797d71ae5a4SJacob Faibussowitsch {
2798dfb205c3SBarry Smith   PetscFunctionBegin;
2799cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
28003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2801dfb205c3SBarry Smith }
2802dfb205c3SBarry Smith 
2803d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2804d71ae5a4SJacob Faibussowitsch {
280510c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
280610c56fdeSHong Zhang   PetscInt    *indx;
280710c56fdeSHong Zhang   PetscScalar *values;
2808dfb205c3SBarry Smith 
28094dcd73b1SHong Zhang   PetscFunctionBegin;
28109566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
281110c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
281210c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2813de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
281410c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2815de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
28164dcd73b1SHong Zhang 
28179566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28189371c9d4SSatish Balay     mbs = m / bs;
28199371c9d4SSatish Balay     Nbs = N / cbs;
282048a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2821da91a574SPierre Jolivet     nbs = n / cbs;
28224dcd73b1SHong Zhang 
28239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2824d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2825de25e9cbSPierre Jolivet 
28269566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
28279566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2828de25e9cbSPierre Jolivet     if (rank == size - 1) {
2829de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28305f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2831de25e9cbSPierre Jolivet     }
2832de25e9cbSPierre Jolivet 
2833d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28349566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
283510c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
28369566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
28374dcd73b1SHong Zhang       nnz = nnz / bs;
28384dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
28399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
28409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
28414dcd73b1SHong Zhang     }
28429566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28439566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28444dcd73b1SHong Zhang 
28459566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
28469566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
28479566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
28489566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
28499566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
28509566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2851d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
28524dcd73b1SHong Zhang   }
28534dcd73b1SHong Zhang 
285410c56fdeSHong Zhang   /* numeric phase */
28559566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28569566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
28574dcd73b1SHong Zhang 
28589566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
28594dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
28609566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28614dcd73b1SHong Zhang     Ii = i + rstart;
28629566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
28639566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28644dcd73b1SHong Zhang   }
28659566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
28679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
28683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28694dcd73b1SHong Zhang }
2870