1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 52d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237a30f8f8cSSatish Balay a_noinsert:; \ 238a30f8f8cSSatish Balay ailen[brow] = nrow; \ 239a8f51744SPierre Jolivet } while (0) 240e5e170daSBarry Smith 241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 242a8f51744SPierre Jolivet do { \ 243a30f8f8cSSatish Balay brow = row / bs; \ 2449371c9d4SSatish Balay rp = bj + bi[brow]; \ 2459371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2469371c9d4SSatish Balay rmax = bimax[brow]; \ 2479371c9d4SSatish Balay nrow = bilen[brow]; \ 248a30f8f8cSSatish Balay bcol = col / bs; \ 2499371c9d4SSatish Balay ridx = row % bs; \ 2509371c9d4SSatish Balay cidx = col % bs; \ 2519371c9d4SSatish Balay low = 0; \ 2529371c9d4SSatish Balay high = nrow; \ 253a30f8f8cSSatish Balay while (high - low > 3) { \ 254a30f8f8cSSatish Balay t = (low + high) / 2; \ 255a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 256a30f8f8cSSatish Balay else low = t; \ 257a30f8f8cSSatish Balay } \ 258a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 259a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 260a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 261a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 262a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 263a30f8f8cSSatish Balay else *bap = value; \ 264a30f8f8cSSatish Balay goto b_noinsert; \ 265a30f8f8cSSatish Balay } \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2685f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 269fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 270a30f8f8cSSatish Balay N = nrow++ - 1; \ 271a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 275a30f8f8cSSatish Balay rp[_i] = bcol; \ 276a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 277a30f8f8cSSatish Balay b_noinsert:; \ 278a30f8f8cSSatish Balay bilen[brow] = nrow; \ 279a8f51744SPierre Jolivet } while (0) 280a30f8f8cSSatish Balay 281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 282da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 283a30f8f8cSSatish Balay */ 28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 285d71ae5a4SJacob Faibussowitsch { 286a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 287a30f8f8cSSatish Balay MatScalar value; 288ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2891302d50aSBarry Smith PetscInt i, j, row, col; 290d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 291d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 292d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 293a30f8f8cSSatish Balay 294a30f8f8cSSatish Balay /* Some Variables required in the macro */ 295a30f8f8cSSatish Balay Mat A = baij->A; 29657508eceSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 2971302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 298a30f8f8cSSatish Balay MatScalar *aa = a->a; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay Mat B = baij->B; 30157508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 3021302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 303a30f8f8cSSatish Balay MatScalar *ba = b->a; 304a30f8f8cSSatish Balay 3051302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3061302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 307a30f8f8cSSatish Balay MatScalar *ap, *bap; 308a30f8f8cSSatish Balay 309a30f8f8cSSatish Balay /* for stash */ 3100298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3110298fd71SBarry Smith MatScalar *v_loc = NULL; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 314a30f8f8cSSatish Balay if (!baij->donotstash) { 31559ffdab8SBarry Smith if (n > baij->n_loc) { 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32026fbe8dcSKarl Rupp 32159ffdab8SBarry Smith baij->n_loc = n; 32259ffdab8SBarry Smith } 32359ffdab8SBarry Smith in_loc = baij->in_loc; 32459ffdab8SBarry Smith v_loc = baij->v_loc; 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay 327a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 328a30f8f8cSSatish Balay if (im[i] < 0) continue; 3295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 330a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 331a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 332a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33301b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 334966bd95aSPierre Jolivet PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33601b2bd88SHong Zhang } 337a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 338a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3399371c9d4SSatish Balay brow = row / bs; 3409371c9d4SSatish Balay bcol = col / bs; 341a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 342db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 343db4deed7SKarl Rupp else value = v[i + j * m]; 344d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3459566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 346f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 347f7d195e4SLawrence Mitchell continue; 348f7d195e4SLawrence Mitchell } else { 349f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 350f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 351a30f8f8cSSatish Balay if (mat->was_assembled) { 35248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 353a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 354eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35571730473SSatish Balay col = col - 1; 356a30f8f8cSSatish Balay #else 35771730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 358a30f8f8cSSatish Balay #endif 359f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) { 3609566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 361a30f8f8cSSatish Balay col = in[j]; 362a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 363a30f8f8cSSatish Balay B = baij->B; 36457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 3659371c9d4SSatish Balay bimax = b->imax; 3669371c9d4SSatish Balay bi = b->i; 3679371c9d4SSatish Balay bilen = b->ilen; 3689371c9d4SSatish Balay bj = b->j; 369a30f8f8cSSatish Balay ba = b->a; 37071730473SSatish Balay } else col += in[j] % bs; 371a30f8f8cSSatish Balay } else col = in[j]; 372db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 373db4deed7SKarl Rupp else value = v[i + j * m]; 374d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3759566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 376a30f8f8cSSatish Balay } 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } else { /* off processor entry */ 3795f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 380a30f8f8cSSatish Balay if (!baij->donotstash) { 3815080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 382a30f8f8cSSatish Balay n_loc = 0; 383a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 384f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 385a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 386a30f8f8cSSatish Balay if (roworiented) { 387a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 388a30f8f8cSSatish Balay } else { 389a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 390a30f8f8cSSatish Balay } 391a30f8f8cSSatish Balay n_loc++; 392a30f8f8cSSatish Balay } 3939566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 3973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay 400d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 401d71ae5a4SJacob Faibussowitsch { 40236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40336bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40436bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40536bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40636bd2089SBarry Smith PetscBool roworiented = a->roworiented; 40736bd2089SBarry Smith const PetscScalar *value = v; 40836bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 40936bd2089SBarry Smith 41036bd2089SBarry Smith PetscFunctionBegin; 41136bd2089SBarry Smith if (col < row) { 412966bd95aSPierre Jolivet PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 413966bd95aSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41436bd2089SBarry Smith } 41536bd2089SBarry Smith rp = aj + ai[row]; 41636bd2089SBarry Smith ap = aa + bs2 * ai[row]; 41736bd2089SBarry Smith rmax = imax[row]; 41836bd2089SBarry Smith nrow = ailen[row]; 41936bd2089SBarry Smith value = v; 42036bd2089SBarry Smith low = 0; 42136bd2089SBarry Smith high = nrow; 42236bd2089SBarry Smith 42336bd2089SBarry Smith while (high - low > 7) { 42436bd2089SBarry Smith t = (low + high) / 2; 42536bd2089SBarry Smith if (rp[t] > col) high = t; 42636bd2089SBarry Smith else low = t; 42736bd2089SBarry Smith } 42836bd2089SBarry Smith for (i = low; i < high; i++) { 42936bd2089SBarry Smith if (rp[i] > col) break; 43036bd2089SBarry Smith if (rp[i] == col) { 43136bd2089SBarry Smith bap = ap + bs2 * i; 43236bd2089SBarry Smith if (roworiented) { 43336bd2089SBarry Smith if (is == ADD_VALUES) { 43436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 435ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43636bd2089SBarry Smith } 43736bd2089SBarry Smith } else { 43836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 439ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44036bd2089SBarry Smith } 44136bd2089SBarry Smith } 44236bd2089SBarry Smith } else { 44336bd2089SBarry Smith if (is == ADD_VALUES) { 44436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 445ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44636bd2089SBarry Smith } 44736bd2089SBarry Smith } else { 44836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 449ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45036bd2089SBarry Smith } 45136bd2089SBarry Smith } 45236bd2089SBarry Smith } 45336bd2089SBarry Smith goto noinsert2; 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4575f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 45836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4599371c9d4SSatish Balay N = nrow++ - 1; 4609371c9d4SSatish Balay high++; 46136bd2089SBarry Smith /* shift up all the later entries in this row */ 4629566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46436bd2089SBarry Smith rp[i] = col; 46536bd2089SBarry Smith bap = ap + bs2 * i; 46636bd2089SBarry Smith if (roworiented) { 46736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 468ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } else { 47136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 472ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47336bd2089SBarry Smith } 47436bd2089SBarry Smith } 47536bd2089SBarry Smith noinsert2:; 47636bd2089SBarry Smith ailen[row] = nrow; 4773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47836bd2089SBarry Smith } 47936bd2089SBarry Smith 48036bd2089SBarry Smith /* 48136bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48236bd2089SBarry Smith */ 483d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 484d71ae5a4SJacob Faibussowitsch { 48536bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 48736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 48836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 48936bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49036bd2089SBarry Smith const PetscScalar *value = v; 49136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49236bd2089SBarry Smith 49336bd2089SBarry Smith PetscFunctionBegin; 49436bd2089SBarry Smith rp = aj + ai[row]; 49536bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49636bd2089SBarry Smith rmax = imax[row]; 49736bd2089SBarry Smith nrow = ailen[row]; 49836bd2089SBarry Smith low = 0; 49936bd2089SBarry Smith high = nrow; 50036bd2089SBarry Smith value = v; 50136bd2089SBarry Smith while (high - low > 7) { 50236bd2089SBarry Smith t = (low + high) / 2; 50336bd2089SBarry Smith if (rp[t] > col) high = t; 50436bd2089SBarry Smith else low = t; 50536bd2089SBarry Smith } 50636bd2089SBarry Smith for (i = low; i < high; i++) { 50736bd2089SBarry Smith if (rp[i] > col) break; 50836bd2089SBarry Smith if (rp[i] == col) { 50936bd2089SBarry Smith bap = ap + bs2 * i; 51036bd2089SBarry Smith if (roworiented) { 51136bd2089SBarry Smith if (is == ADD_VALUES) { 51236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 513ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51436bd2089SBarry Smith } 51536bd2089SBarry Smith } else { 51636bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 517ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 51836bd2089SBarry Smith } 51936bd2089SBarry Smith } 52036bd2089SBarry Smith } else { 52136bd2089SBarry Smith if (is == ADD_VALUES) { 52236bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 523ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52436bd2089SBarry Smith bap += bs; 52536bd2089SBarry Smith } 52636bd2089SBarry Smith } else { 52736bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 528ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 52936bd2089SBarry Smith bap += bs; 53036bd2089SBarry Smith } 53136bd2089SBarry Smith } 53236bd2089SBarry Smith } 53336bd2089SBarry Smith goto noinsert2; 53436bd2089SBarry Smith } 53536bd2089SBarry Smith } 53636bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5375f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 53836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5399371c9d4SSatish Balay N = nrow++ - 1; 5409371c9d4SSatish Balay high++; 54136bd2089SBarry Smith /* shift up all the later entries in this row */ 5429566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5439566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54436bd2089SBarry Smith rp[i] = col; 54536bd2089SBarry Smith bap = ap + bs2 * i; 54636bd2089SBarry Smith if (roworiented) { 54736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 548ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 54936bd2089SBarry Smith } 55036bd2089SBarry Smith } else { 55136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 552ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55336bd2089SBarry Smith } 55436bd2089SBarry Smith } 55536bd2089SBarry Smith noinsert2:; 55636bd2089SBarry Smith ailen[row] = nrow; 5573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55836bd2089SBarry Smith } 55936bd2089SBarry Smith 56036bd2089SBarry Smith /* 56136bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56236bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56336bd2089SBarry Smith */ 56466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 565d71ae5a4SJacob Faibussowitsch { 5660880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 567f15d580aSBarry Smith const MatScalar *value; 568f15d580aSBarry Smith MatScalar *barray = baij->barray; 569ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 570899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 571476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 572476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5730880e062SHong Zhang 574a30f8f8cSSatish Balay PetscFunctionBegin; 5750880e062SHong Zhang if (!barray) { 5769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5770880e062SHong Zhang baij->barray = barray; 5780880e062SHong Zhang } 5790880e062SHong Zhang 5800880e062SHong Zhang if (roworiented) { 5810880e062SHong Zhang stepval = (n - 1) * bs; 5820880e062SHong Zhang } else { 5830880e062SHong Zhang stepval = (m - 1) * bs; 5840880e062SHong Zhang } 5850880e062SHong Zhang for (i = 0; i < m; i++) { 5860880e062SHong Zhang if (im[i] < 0) continue; 5876bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5880880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5890880e062SHong Zhang row = im[i] - rstart; 5900880e062SHong Zhang for (j = 0; j < n; j++) { 591f3f98c53SJed Brown if (im[i] > in[j]) { 592966bd95aSPierre Jolivet PetscCheck(ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 593966bd95aSPierre Jolivet continue; /* ignore lower triangular blocks */ 594f3f98c53SJed Brown } 5950880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 596966bd95aSPierre Jolivet if (roworiented && n == 1) { 597f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5980880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 599f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6000880e062SHong Zhang } else { /* Here a copy is required */ 6010880e062SHong Zhang if (roworiented) { 6020880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6030880e062SHong Zhang } else { 6040880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6050880e062SHong Zhang } 6060880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 607ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6080880e062SHong Zhang } 6090880e062SHong Zhang barray -= bs2; 6100880e062SHong Zhang } 6110880e062SHong Zhang 6120880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6130880e062SHong Zhang col = in[j] - cstart; 6149566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 615f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 616f7d195e4SLawrence Mitchell continue; 617f7d195e4SLawrence Mitchell } else { 618f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6190880e062SHong Zhang if (mat->was_assembled) { 62048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6210880e062SHong Zhang 6220880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 623eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 624b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 6250880e062SHong Zhang #else 626b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 6270880e062SHong Zhang #endif 628f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 6299566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6300880e062SHong Zhang col = in[j]; 6310880e062SHong Zhang } 63226fbe8dcSKarl Rupp } else col = in[j]; 6339566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6340880e062SHong Zhang } 6350880e062SHong Zhang } 6360880e062SHong Zhang } else { 6375f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6380880e062SHong Zhang if (!baij->donotstash) { 6390880e062SHong Zhang if (roworiented) { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410880e062SHong Zhang } else { 6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6430880e062SHong Zhang } 6440880e062SHong Zhang } 6450880e062SHong Zhang } 6460880e062SHong Zhang } 6473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 65066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 651d71ae5a4SJacob Faibussowitsch { 652f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 653d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 654d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay PetscFunctionBegin; 657a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 65854c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 65954c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 660966bd95aSPierre Jolivet PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 661a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 662a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 66354c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66454c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 665a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 666a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6679566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 668a30f8f8cSSatish Balay } else { 66948a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 670a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 671eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 672a30f8f8cSSatish Balay data--; 673a30f8f8cSSatish Balay #else 674a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 675a30f8f8cSSatish Balay #endif 676966bd95aSPierre Jolivet if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0; 677a30f8f8cSSatish Balay else { 678a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6799566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay } 6843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay 68766976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 688d71ae5a4SJacob Faibussowitsch { 689a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 690a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 691a30f8f8cSSatish Balay 692a30f8f8cSSatish Balay PetscFunctionBegin; 693a30f8f8cSSatish Balay if (baij->size == 1) { 6949566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 695a30f8f8cSSatish Balay } else { 696a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 6989566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 6999371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 70075dbe01dSPierre Jolivet lnorm2++; /* square power of norm(A) */ 7019566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7029371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 70375dbe01dSPierre Jolivet lnorm2--; /* square power of norm(B) */ 704462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7058f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7069566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7070b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7080b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7090b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 710e91c04dfSPierre Jolivet PetscReal *rsum, vabs; 711899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 712d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7130b8dc8d2SHong Zhang MatScalar *v; 7140b8dc8d2SHong Zhang 71575dbe01dSPierre Jolivet PetscCall(PetscCalloc1(mat->cmap->N, &rsum)); 7160b8dc8d2SHong Zhang /* Amat */ 7179371c9d4SSatish Balay v = amat->a; 7189371c9d4SSatish Balay jj = amat->j; 7190b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7200b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7210b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7220b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7239371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7249371c9d4SSatish Balay jj++; 7250b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7260b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7279371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7289371c9d4SSatish Balay v++; 7290b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7300b8dc8d2SHong Zhang /* non-diagonal block */ 7310b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7320b8dc8d2SHong Zhang } 7330b8dc8d2SHong Zhang } 7340b8dc8d2SHong Zhang } 7359566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7360b8dc8d2SHong Zhang } 7370b8dc8d2SHong Zhang /* Bmat */ 7389371c9d4SSatish Balay v = bmat->a; 7399371c9d4SSatish Balay jj = bmat->j; 7400b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7410b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7420b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7430b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7449371c9d4SSatish Balay gcol = bs * garray[*jj]; 7459371c9d4SSatish Balay jj++; 7460b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7470b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7489371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7499371c9d4SSatish Balay v++; 7500b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7510b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7520b8dc8d2SHong Zhang } 7530b8dc8d2SHong Zhang } 7540b8dc8d2SHong Zhang } 7559566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7560b8dc8d2SHong Zhang } 757e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7580b8dc8d2SHong Zhang *norm = 0.0; 759d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 760e91c04dfSPierre Jolivet if (rsum[col] > *norm) *norm = rsum[col]; 7610b8dc8d2SHong Zhang } 762e91c04dfSPierre Jolivet PetscCall(PetscFree(rsum)); 763f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 764a30f8f8cSSatish Balay } 7653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay 76866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 769d71ae5a4SJacob Faibussowitsch { 770a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7711302d50aSBarry Smith PetscInt nstash, reallocs; 772a30f8f8cSSatish Balay 773a30f8f8cSSatish Balay PetscFunctionBegin; 7743ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 775a30f8f8cSSatish Balay 7769566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7779566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7789566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7809566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7819566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay 78566976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 786d71ae5a4SJacob Faibussowitsch { 787a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 788a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 78913f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 790e44c0bd4SBarry Smith PetscInt *row, *col; 791c0edf612SJunchao Zhang PetscBool all_assembled; 79213f74950SBarry Smith PetscMPIInt n; 793ace3abfcSBarry Smith PetscBool r1, r2, r3; 794a30f8f8cSSatish Balay MatScalar *val; 795a30f8f8cSSatish Balay 79691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 797a30f8f8cSSatish Balay PetscFunctionBegin; 7984cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 799a30f8f8cSSatish Balay while (1) { 8009566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 801a30f8f8cSSatish Balay if (!flg) break; 802a30f8f8cSSatish Balay 803a30f8f8cSSatish Balay for (i = 0; i < n;) { 804a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 80526fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 80626fbe8dcSKarl Rupp if (row[j] != rstart) break; 80726fbe8dcSKarl Rupp } 808a30f8f8cSSatish Balay if (j < n) ncols = j - i; 809a30f8f8cSSatish Balay else ncols = n - i; 810a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8119566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 812a30f8f8cSSatish Balay i = j; 813a30f8f8cSSatish Balay } 814a30f8f8cSSatish Balay } 8159566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 816a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8175e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 818a30f8f8cSSatish Balay restore the original flags */ 819a30f8f8cSSatish Balay r1 = baij->roworiented; 820a30f8f8cSSatish Balay r2 = a->roworiented; 82191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 82226fbe8dcSKarl Rupp 823a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 824a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 82526fbe8dcSKarl Rupp 826b638e6b4SJunchao Zhang ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworiented */ 827a30f8f8cSSatish Balay while (1) { 8289566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 829a30f8f8cSSatish Balay if (!flg) break; 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay for (i = 0; i < n;) { 832a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 83326fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 83426fbe8dcSKarl Rupp if (row[j] != rstart) break; 83526fbe8dcSKarl Rupp } 836a30f8f8cSSatish Balay if (j < n) ncols = j - i; 837a30f8f8cSSatish Balay else ncols = n - i; 8389566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 839a30f8f8cSSatish Balay i = j; 840a30f8f8cSSatish Balay } 841a30f8f8cSSatish Balay } 8429566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 84326fbe8dcSKarl Rupp 844a30f8f8cSSatish Balay baij->roworiented = r1; 845a30f8f8cSSatish Balay a->roworiented = r2; 84626fbe8dcSKarl Rupp 847b638e6b4SJunchao Zhang ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 848a30f8f8cSSatish Balay } 849a30f8f8cSSatish Balay 8509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 852a30f8f8cSSatish Balay 853b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 8546aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 855a30f8f8cSSatish Balay /* 856a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 857b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 858a30f8f8cSSatish Balay */ 859a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8605440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 861c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay 864ac530a7eSPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ 8659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 867a30f8f8cSSatish Balay 8689566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 86926fbe8dcSKarl Rupp 870f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8714f9cfa9eSBarry Smith 8724f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 873f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 874e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 875462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 876e56f5c9eSBarry Smith } 8773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay 880dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8819804daf3SBarry Smith #include <petscdraw.h> 882d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 883d71ae5a4SJacob Faibussowitsch { 884a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 885d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8867da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 8879f196a02SMartin Diehl PetscBool isascii, isdraw; 888b0a32e0cSBarry Smith PetscViewer sviewer; 889f3ef73ceSBarry Smith PetscViewerFormat format; 890a30f8f8cSSatish Balay 891a30f8f8cSSatish Balay PetscFunctionBegin; 8929f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 8939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 8949f196a02SMartin Diehl if (isascii) { 8959566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 896456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 897a30f8f8cSSatish Balay MatInfo info; 8989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 8999566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9019371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 902835f2295SStefano Zampini mat->rmap->bs, info.memory)); 9039566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9059566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9079566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9109566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 912*e363090eSPierre Jolivet } else if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_FACTOR_INFO) PetscFunctionReturn(PETSC_SUCCESS); 913a30f8f8cSSatish Balay } 914a30f8f8cSSatish Balay 915a30f8f8cSSatish Balay if (isdraw) { 916b0a32e0cSBarry Smith PetscDraw draw; 917ace3abfcSBarry Smith PetscBool isnull; 9189566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9199566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9203ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 921a30f8f8cSSatish Balay } 922a30f8f8cSSatish Balay 9237da1fb6eSBarry Smith { 924a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 925a30f8f8cSSatish Balay Mat A; 92665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 92765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 928d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 929a30f8f8cSSatish Balay MatScalar *a; 9303e219373SBarry Smith const char *matname; 931a30f8f8cSSatish Balay 932f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9339566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 934dd400576SPatrick Sanan if (rank == 0) { 9359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 936a30f8f8cSSatish Balay } else { 9379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 938a30f8f8cSSatish Balay } 9399566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9409566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9419566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 942a30f8f8cSSatish Balay 943a30f8f8cSSatish Balay /* copy over the A part */ 94465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9459371c9d4SSatish Balay ai = Aloc->i; 9469371c9d4SSatish Balay aj = Aloc->j; 9479371c9d4SSatish Balay a = Aloc->a; 9489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 949a30f8f8cSSatish Balay 950a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 951e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 95226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 953a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 954e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 955a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9569566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 95726fbe8dcSKarl Rupp col++; 95826fbe8dcSKarl Rupp a += bs; 959a30f8f8cSSatish Balay } 960a30f8f8cSSatish Balay } 961a30f8f8cSSatish Balay } 962a30f8f8cSSatish Balay /* copy over the B part */ 96365d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9649371c9d4SSatish Balay ai = Bloc->i; 9659371c9d4SSatish Balay aj = Bloc->j; 9669371c9d4SSatish Balay a = Bloc->a; 967a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 968e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 96926fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 970a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 971a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 972a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9739566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 97426fbe8dcSKarl Rupp col++; 97526fbe8dcSKarl Rupp a += bs; 976a30f8f8cSSatish Balay } 977a30f8f8cSSatish Balay } 978a30f8f8cSSatish Balay } 9799566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 982a30f8f8cSSatish Balay /* 983a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 984b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 985a30f8f8cSSatish Balay */ 9869566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 98723a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 988dd400576SPatrick Sanan if (rank == 0) { 989f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname)); 990f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer)); 991a30f8f8cSSatish Balay } 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 9939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 994a30f8f8cSSatish Balay } 9953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 996a30f8f8cSSatish Balay } 997a30f8f8cSSatish Balay 998618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 999618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1000d1654148SHong Zhang 100166976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1002d71ae5a4SJacob Faibussowitsch { 10039f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 1004a30f8f8cSSatish Balay 1005a30f8f8cSSatish Balay PetscFunctionBegin; 10069f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 10079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1010ac530a7eSPierre Jolivet if (isascii || isdraw || issocket) PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 1011ac530a7eSPierre Jolivet else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1013a30f8f8cSSatish Balay } 1014a30f8f8cSSatish Balay 1015789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1016789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1017d71ae5a4SJacob Faibussowitsch { 1018547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1019eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10206de40e93SBarry Smith PetscScalar *from; 10216de40e93SBarry Smith const PetscScalar *x; 1022547795f9SHong Zhang 1023547795f9SHong Zhang PetscFunctionBegin; 1024547795f9SHong Zhang /* diagonal part */ 10259566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1026629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1027629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1028629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1029547795f9SHong Zhang 1030547795f9SHong Zhang /* subdiagonal part */ 10315f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10329566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1033547795f9SHong Zhang 1034547795f9SHong Zhang /* copy x into the vec slvec0 */ 10359566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1037547795f9SHong Zhang 10389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1041547795f9SHong Zhang 10429566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1044547795f9SHong Zhang /* supperdiagonal part */ 10459566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1047547795f9SHong Zhang } 1048789afff4SPierre Jolivet #endif 1049547795f9SHong Zhang 105066976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1051d71ae5a4SJacob Faibussowitsch { 1052a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1053eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1054d9ca1df4SBarry Smith PetscScalar *from; 1055d9ca1df4SBarry Smith const PetscScalar *x; 1056a9d4b620SHong Zhang 1057a9d4b620SHong Zhang PetscFunctionBegin; 1058a9d4b620SHong Zhang /* diagonal part */ 10599566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1060629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1061629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1062629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1063a9d4b620SHong Zhang 1064a9d4b620SHong Zhang /* subdiagonal part */ 10659566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1066fc165ae2SBarry Smith 1067a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10689566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1070a9d4b620SHong Zhang 10719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10729566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10739566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1074fc165ae2SBarry Smith 10759566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10769566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1077a9d4b620SHong Zhang /* supperdiagonal part */ 10789566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1080a9d4b620SHong Zhang } 1081a9d4b620SHong Zhang 108266976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 108366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1084d71ae5a4SJacob Faibussowitsch { 1085eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1086eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1087629a200eSBarry Smith PetscScalar *from; 1088eb1ec7c1SStefano Zampini const PetscScalar *x; 1089eb1ec7c1SStefano Zampini 1090eb1ec7c1SStefano Zampini PetscFunctionBegin; 1091eb1ec7c1SStefano Zampini /* diagonal part */ 10929566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1093629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1094629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1095eb1ec7c1SStefano Zampini 1096eb1ec7c1SStefano Zampini /* subdiagonal part */ 10975f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10989566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1099eb1ec7c1SStefano Zampini 1100eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11019566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11049566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1105eb1ec7c1SStefano Zampini 11069566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11089566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1109eb1ec7c1SStefano Zampini 1110eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11119566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1113eb1ec7c1SStefano Zampini } 111466976f2fSJacob Faibussowitsch #endif 1115eb1ec7c1SStefano Zampini 111666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1117d71ae5a4SJacob Faibussowitsch { 1118de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1119d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1120629a200eSBarry Smith PetscScalar *from; 1121d9ca1df4SBarry Smith const PetscScalar *x; 1122a9d4b620SHong Zhang 1123a9d4b620SHong Zhang PetscFunctionBegin; 1124a9d4b620SHong Zhang /* diagonal part */ 11259566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1126629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1127629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1128a9d4b620SHong Zhang 1129a9d4b620SHong Zhang /* subdiagonal part */ 11309566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1131a9d4b620SHong Zhang 1132a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11339566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1137a9d4b620SHong Zhang 11389566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11409566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1141a9d4b620SHong Zhang 1142a9d4b620SHong Zhang /* supperdiagonal part */ 11439566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1145a9d4b620SHong Zhang } 1146a9d4b620SHong Zhang 1147a30f8f8cSSatish Balay /* 1148a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1149a30f8f8cSSatish Balay diagonal block 1150a30f8f8cSSatish Balay */ 115166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1152d71ae5a4SJacob Faibussowitsch { 1153a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1154a30f8f8cSSatish Balay 1155a30f8f8cSSatish Balay PetscFunctionBegin; 115608401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11579566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1159a30f8f8cSSatish Balay } 1160a30f8f8cSSatish Balay 116166976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1162d71ae5a4SJacob Faibussowitsch { 1163a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1164a30f8f8cSSatish Balay 1165a30f8f8cSSatish Balay PetscFunctionBegin; 11669566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11679566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1169a30f8f8cSSatish Balay } 1170a30f8f8cSSatish Balay 117166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1172d71ae5a4SJacob Faibussowitsch { 1173d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1174d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1175d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1176d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1177899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1178d0d4cfc2SHong Zhang 1179a30f8f8cSSatish Balay PetscFunctionBegin; 11805f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1181d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1182d0d4cfc2SHong Zhang 1183d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1184d0d4cfc2SHong Zhang /* 1185d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1186d0d4cfc2SHong Zhang */ 1187d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1188d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1189d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1190d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1191d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 119226fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1193d0d4cfc2SHong Zhang } 11949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1195d0d4cfc2SHong Zhang } 1196d0d4cfc2SHong Zhang 11975f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1198d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1199d0d4cfc2SHong Zhang 12009371c9d4SSatish Balay pvA = &vworkA; 12019371c9d4SSatish Balay pcA = &cworkA; 12029371c9d4SSatish Balay pvB = &vworkB; 12039371c9d4SSatish Balay pcB = &cworkB; 12049371c9d4SSatish Balay if (!v) { 12059371c9d4SSatish Balay pvA = NULL; 12069371c9d4SSatish Balay pvB = NULL; 12079371c9d4SSatish Balay } 12089371c9d4SSatish Balay if (!idx) { 12099371c9d4SSatish Balay pcA = NULL; 12109371c9d4SSatish Balay if (!v) pcB = NULL; 12119371c9d4SSatish Balay } 12129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12139566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1214d0d4cfc2SHong Zhang nztot = nzA + nzB; 1215d0d4cfc2SHong Zhang 1216d0d4cfc2SHong Zhang cmap = mat->garray; 1217d0d4cfc2SHong Zhang if (v || idx) { 1218d0d4cfc2SHong Zhang if (nztot) { 1219d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1220d0d4cfc2SHong Zhang PetscInt imark = -1; 1221d0d4cfc2SHong Zhang if (v) { 1222d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1223d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1224d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1225d0d4cfc2SHong Zhang else break; 1226d0d4cfc2SHong Zhang } 1227d0d4cfc2SHong Zhang imark = i; 1228d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1229d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1230d0d4cfc2SHong Zhang } 1231d0d4cfc2SHong Zhang if (idx) { 1232d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1233d0d4cfc2SHong Zhang if (imark > -1) { 1234ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1235d0d4cfc2SHong Zhang } else { 1236d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 123726fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1238d0d4cfc2SHong Zhang else break; 1239d0d4cfc2SHong Zhang } 1240d0d4cfc2SHong Zhang imark = i; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1243d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1244d0d4cfc2SHong Zhang } 1245d0d4cfc2SHong Zhang } else { 1246f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1247f4259b30SLisandro Dalcin if (v) *v = NULL; 1248d0d4cfc2SHong Zhang } 1249d0d4cfc2SHong Zhang } 1250d0d4cfc2SHong Zhang *nz = nztot; 12519566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12529566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay 125666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1257d71ae5a4SJacob Faibussowitsch { 1258a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1259a30f8f8cSSatish Balay 1260a30f8f8cSSatish Balay PetscFunctionBegin; 12615f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1262a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1264a30f8f8cSSatish Balay } 1265a30f8f8cSSatish Balay 126666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1267d71ae5a4SJacob Faibussowitsch { 1268d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1269d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1270d0d4cfc2SHong Zhang 1271d0d4cfc2SHong Zhang PetscFunctionBegin; 1272d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1274d0d4cfc2SHong Zhang } 127566976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1276d71ae5a4SJacob Faibussowitsch { 1277d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1278d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1279d0d4cfc2SHong Zhang 1280d0d4cfc2SHong Zhang PetscFunctionBegin; 1281d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 12823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1283d0d4cfc2SHong Zhang } 1284d0d4cfc2SHong Zhang 128566976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1286d71ae5a4SJacob Faibussowitsch { 12875f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12885f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 12892726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 12902726fb6dSPierre Jolivet 12919566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 12929566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 12935f80ce2aSJacob Faibussowitsch } 12943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12952726fb6dSPierre Jolivet } 12962726fb6dSPierre Jolivet 129766976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1298d71ae5a4SJacob Faibussowitsch { 129999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 130099cafbc1SBarry Smith 130199cafbc1SBarry Smith PetscFunctionBegin; 13029566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13039566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130599cafbc1SBarry Smith } 130699cafbc1SBarry Smith 130766976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1308d71ae5a4SJacob Faibussowitsch { 130999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 131099cafbc1SBarry Smith 131199cafbc1SBarry Smith PetscFunctionBegin; 13129566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13139566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131599cafbc1SBarry Smith } 131699cafbc1SBarry Smith 13177dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 131836032a97SHong Zhang Input: isrow - distributed(parallel), 131936032a97SHong Zhang iscol_local - locally owned (seq) 132036032a97SHong Zhang */ 132166976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1322d71ae5a4SJacob Faibussowitsch { 13238f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13248f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 132536032a97SHong Zhang 132636032a97SHong Zhang PetscFunctionBegin; 132766976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13289566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 133066976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13318f46ffcaSHong Zhang 13329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13339566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13348f46ffcaSHong Zhang 13359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13379566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13399566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13409566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13418f46ffcaSHong Zhang 13428f46ffcaSHong Zhang nmatch = 0; 13438f46ffcaSHong Zhang k = 0; 13448f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13458f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13468f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13479371c9d4SSatish Balay k = j; 13489371c9d4SSatish Balay nmatch++; 13498f46ffcaSHong Zhang break; 13508f46ffcaSHong Zhang } 13518f46ffcaSHong Zhang } 13528f46ffcaSHong Zhang } 13539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13549566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13559566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13569566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13571098a8e8SHong Zhang if (nmatch < sz1) { 13581098a8e8SHong Zhang *flg = PETSC_FALSE; 13591098a8e8SHong Zhang } else { 13601098a8e8SHong Zhang *flg = PETSC_TRUE; 13611098a8e8SHong Zhang } 13623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13638f46ffcaSHong Zhang } 136436032a97SHong Zhang 136566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1366d71ae5a4SJacob Faibussowitsch { 1367fdfbdca6SPierre Jolivet Mat C[2]; 1368fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1369fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1370fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 137136032a97SHong Zhang 137236032a97SHong Zhang PetscFunctionBegin; 13739566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1374fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 137536032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13769566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13775f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 137836032a97SHong Zhang } else { 13799566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13809566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1381fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 13828f46ffcaSHong Zhang } 1383fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1384fdfbdca6SPierre Jolivet if (!isequal) { 1385fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1386fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1387fdfbdca6SPierre Jolivet if (!isidentity) { 1388fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1389fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1390fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1391fdfbdca6SPierre Jolivet } else { 1392fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1393fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1394fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1395fdfbdca6SPierre Jolivet } 1396fdfbdca6SPierre Jolivet } 1397fdfbdca6SPierre Jolivet } 13987dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1399fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1400fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14018f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1402fdfbdca6SPierre Jolivet IS intersect; 1403fdfbdca6SPierre Jolivet PetscInt ni; 1404fdfbdca6SPierre Jolivet 1405fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1406fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1407fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1408fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1409fdfbdca6SPierre Jolivet } 1410fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1411fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1412fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1413fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1414fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1415fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1416fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1417fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1418fdfbdca6SPierre Jolivet } 1419fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1420fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1421fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1422fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1423fdfbdca6SPierre Jolivet } 14249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14268f46ffcaSHong Zhang } 14273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14288f46ffcaSHong Zhang } 14298f46ffcaSHong Zhang 143066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1431d71ae5a4SJacob Faibussowitsch { 1432a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1433a30f8f8cSSatish Balay 1434a30f8f8cSSatish Balay PetscFunctionBegin; 14359566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14369566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1438a30f8f8cSSatish Balay } 1439a30f8f8cSSatish Balay 144066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1441d71ae5a4SJacob Faibussowitsch { 1442a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1443a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14443966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1445a30f8f8cSSatish Balay 1446a30f8f8cSSatish Balay PetscFunctionBegin; 1447d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 144826fbe8dcSKarl Rupp 14499566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 145026fbe8dcSKarl Rupp 14519371c9d4SSatish Balay isend[0] = info->nz_used; 14529371c9d4SSatish Balay isend[1] = info->nz_allocated; 14539371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14549371c9d4SSatish Balay isend[3] = info->memory; 14559371c9d4SSatish Balay isend[4] = info->mallocs; 145626fbe8dcSKarl Rupp 14579566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 145826fbe8dcSKarl Rupp 14599371c9d4SSatish Balay isend[0] += info->nz_used; 14609371c9d4SSatish Balay isend[1] += info->nz_allocated; 14619371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14629371c9d4SSatish Balay isend[3] += info->memory; 14639371c9d4SSatish Balay isend[4] += info->mallocs; 1464a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1465a30f8f8cSSatish Balay info->nz_used = isend[0]; 1466a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1467a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1468a30f8f8cSSatish Balay info->memory = isend[3]; 1469a30f8f8cSSatish Balay info->mallocs = isend[4]; 1470a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1471462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 147226fbe8dcSKarl Rupp 1473a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1474a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1475a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1476a30f8f8cSSatish Balay info->memory = irecv[3]; 1477a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1478a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1479462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 148026fbe8dcSKarl Rupp 1481a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1482a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1483a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1484a30f8f8cSSatish Balay info->memory = irecv[3]; 1485a30f8f8cSSatish Balay info->mallocs = irecv[4]; 148698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1487a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1488a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1489a30f8f8cSSatish Balay info->factor_mallocs = 0; 14903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1491a30f8f8cSSatish Balay } 1492a30f8f8cSSatish Balay 149366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1494d71ae5a4SJacob Faibussowitsch { 1495a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1496d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1497a30f8f8cSSatish Balay 1498a30f8f8cSSatish Balay PetscFunctionBegin; 1499e98b92d7SKris Buschelman switch (op) { 1500512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1501e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 150228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1503a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1504e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 150543674050SBarry Smith MatCheckPreallocated(A, 1); 15069566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15079566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1508e98b92d7SKris Buschelman break; 1509e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 151043674050SBarry Smith MatCheckPreallocated(A, 1); 15114e0d8c25SBarry Smith a->roworiented = flg; 151226fbe8dcSKarl Rupp 15139566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15149566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1515e98b92d7SKris Buschelman break; 1516d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1517d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1518d71ae5a4SJacob Faibussowitsch break; 1519d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1520d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1521d71ae5a4SJacob Faibussowitsch break; 1522d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 15239725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 15240f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1525eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1526547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1527eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1528eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1529eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1530eb1ec7c1SStefano Zampini } 15310f2140c7SStefano Zampini #endif 1532eeffb40dSHong Zhang break; 1533ffa07934SHong Zhang case MAT_SPD: 1534d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 15359725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1536eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1537eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1538eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1539eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1540eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1541eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1542eb1ec7c1SStefano Zampini } 1543eb1ec7c1SStefano Zampini #endif 1544eeffb40dSHong Zhang break; 154577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15469725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1547eeffb40dSHong Zhang break; 1548d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1549d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1550d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1551d71ae5a4SJacob Faibussowitsch break; 1552d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1553d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1554d71ae5a4SJacob Faibussowitsch break; 1555d71ae5a4SJacob Faibussowitsch default: 1556888c827cSStefano Zampini break; 1557a30f8f8cSSatish Balay } 15583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1559a30f8f8cSSatish Balay } 1560a30f8f8cSSatish Balay 156166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1562d71ae5a4SJacob Faibussowitsch { 1563a30f8f8cSSatish Balay PetscFunctionBegin; 15647fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1565cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15669566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1567cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15689566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1569fc4dec0aSBarry Smith } 15703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1571a30f8f8cSSatish Balay } 1572a30f8f8cSSatish Balay 157366976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1574d71ae5a4SJacob Faibussowitsch { 1575a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1576a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 15775e90f9d9SHong Zhang PetscInt nv, m, n; 1578a30f8f8cSSatish Balay 1579a30f8f8cSSatish Balay PetscFunctionBegin; 15803ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1581b3bf805bSHong Zhang 15829566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 15835f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1584b3bf805bSHong Zhang 15859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 15865f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 15875e90f9d9SHong Zhang 15889566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 15895e90f9d9SHong Zhang 15905e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1591dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15925e90f9d9SHong Zhang 15935e90f9d9SHong Zhang /* scale the diagonal part */ 1594dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1595a30f8f8cSSatish Balay 15965e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 15979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1598dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 15993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1600a30f8f8cSSatish Balay } 1601a30f8f8cSSatish Balay 160266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1603d71ae5a4SJacob Faibussowitsch { 1604f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1605a30f8f8cSSatish Balay 1606a30f8f8cSSatish Balay PetscFunctionBegin; 16079566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1609a30f8f8cSSatish Balay } 1610a30f8f8cSSatish Balay 16116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1612a30f8f8cSSatish Balay 161366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1614d71ae5a4SJacob Faibussowitsch { 1615a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1616a30f8f8cSSatish Balay Mat a, b, c, d; 1617ace3abfcSBarry Smith PetscBool flg; 1618a30f8f8cSSatish Balay 1619a30f8f8cSSatish Balay PetscFunctionBegin; 16209371c9d4SSatish Balay a = matA->A; 16219371c9d4SSatish Balay b = matA->B; 16229371c9d4SSatish Balay c = matB->A; 16239371c9d4SSatish Balay d = matB->B; 1624a30f8f8cSSatish Balay 16259566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 162648a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 16275440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1629a30f8f8cSSatish Balay } 1630a30f8f8cSSatish Balay 163166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1632d71ae5a4SJacob Faibussowitsch { 16334c7a3774SStefano Zampini PetscBool isbaij; 16343c896bc6SHong Zhang 16353c896bc6SHong Zhang PetscFunctionBegin; 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16375f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16383c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16393c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16409566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16419566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16429566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16433c896bc6SHong Zhang } else { 16444c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16454c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16464c7a3774SStefano Zampini 16479566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16489566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16493c896bc6SHong Zhang } 16509566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16523c896bc6SHong Zhang } 16533c896bc6SHong Zhang 165466976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1655d71ae5a4SJacob Faibussowitsch { 16564fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16574fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16584fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16594fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16604fe895cdSHong Zhang 16614fe895cdSHong Zhang PetscFunctionBegin; 16624fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16634fe895cdSHong Zhang PetscScalar alpha = a; 16644fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16654fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16669566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1667792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16684fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16694fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16709566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1671792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1673ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16749566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 16759566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 16769566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 16774fe895cdSHong Zhang } else { 16784de5dceeSHong Zhang Mat B; 16794de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 16805f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 16819566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16829566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 16849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 16859566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 16869566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 16879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 16899566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 16909566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 16919566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 16929566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 16939566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 16949566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 16959566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 16969566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 16979566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 16989566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 16994fe895cdSHong Zhang } 17003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17014fe895cdSHong Zhang } 17024fe895cdSHong Zhang 170366976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1704d71ae5a4SJacob Faibussowitsch { 17051302d50aSBarry Smith PetscInt i; 1706afebec48SHong Zhang PetscBool flg; 1707a5e6ed63SBarry Smith 17086849ba73SBarry Smith PetscFunctionBegin; 17099566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1710a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17119566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 171248a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17134dcd73b1SHong Zhang } 17143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1715a5e6ed63SBarry Smith } 1716a5e6ed63SBarry Smith 171766976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1718d71ae5a4SJacob Faibussowitsch { 17197d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17206f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17217d68702bSBarry Smith 17227d68702bSBarry Smith PetscFunctionBegin; 17236f33a894SBarry Smith if (!Y->preallocated) { 17249566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17256f33a894SBarry Smith } else if (!aij->nz) { 1726b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17279566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1728b83222d8SBarry Smith aij->nonew = nonew; 17297d68702bSBarry Smith } 17309566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17327d68702bSBarry Smith } 17337d68702bSBarry Smith 173466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1735d71ae5a4SJacob Faibussowitsch { 1736a5b7ff6bSBarry Smith PetscFunctionBegin; 1737a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1739a5b7ff6bSBarry Smith } 17403b49f96aSBarry Smith 174117ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 174217ea310bSPierre Jolivet { 174317ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 174417ea310bSPierre Jolivet 174517ea310bSPierre Jolivet PetscFunctionBegin; 174617ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 174717ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 174817ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 174917ea310bSPierre Jolivet } 175017ea310bSPierre Jolivet 17516cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer); 1752789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]); 1753789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 17546cff0a6bSPierre Jolivet 17553964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1756a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1757a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1758a9d4b620SHong Zhang MatMult_MPISBAIJ, 175997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1760431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1761431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1762f4259b30SLisandro Dalcin NULL, 1763f4259b30SLisandro Dalcin NULL, 1764f4259b30SLisandro Dalcin NULL, 1765f4259b30SLisandro Dalcin /* 10*/ NULL, 1766f4259b30SLisandro Dalcin NULL, 1767f4259b30SLisandro Dalcin NULL, 176841f059aeSBarry Smith MatSOR_MPISBAIJ, 1769a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 177097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1771a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1772a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1773a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1774a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 177597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1776a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1777a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1778a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1779f4259b30SLisandro Dalcin /* 24*/ NULL, 1780f4259b30SLisandro Dalcin NULL, 1781f4259b30SLisandro Dalcin NULL, 1782f4259b30SLisandro Dalcin NULL, 1783f4259b30SLisandro Dalcin NULL, 178426cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1785f4259b30SLisandro Dalcin NULL, 1786f4259b30SLisandro Dalcin NULL, 1787a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1788f4259b30SLisandro Dalcin NULL, 1789d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 1794d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 17957dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1796d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1797a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 17983c896bc6SHong Zhang MatCopy_MPISBAIJ, 1799f4259b30SLisandro Dalcin /* 44*/ NULL, 1800a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18017d68702bSBarry Smith MatShift_MPISBAIJ, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin NULL, 1804f4259b30SLisandro Dalcin /* 49*/ NULL, 1805f4259b30SLisandro Dalcin NULL, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin /* 54*/ NULL, 1810f4259b30SLisandro Dalcin NULL, 1811a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1812f4259b30SLisandro Dalcin NULL, 1813a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18147dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin /* 64*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 18238bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPISBAIJ, 18248bb0f5c6SPierre Jolivet /* 69*/ NULL, 182528d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 18335bba2384SShri Abhyankar MatLoad_MPISBAIJ, 18348bb0f5c6SPierre Jolivet /* 79*/ NULL, 18358bb0f5c6SPierre Jolivet NULL, 18368bb0f5c6SPierre Jolivet NULL, 18378bb0f5c6SPierre Jolivet NULL, 18388bb0f5c6SPierre Jolivet NULL, 1839f4259b30SLisandro Dalcin /* 84*/ NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin /* 89*/ NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 18488bb0f5c6SPierre Jolivet MatConjugate_MPISBAIJ, 1849f4259b30SLisandro Dalcin /* 94*/ NULL, 1850f4259b30SLisandro Dalcin NULL, 185199cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1852d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1853d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 18548bb0f5c6SPierre Jolivet /* 99*/ MatRestoreRowUpperTriangular_MPISBAIJ, 18558bb0f5c6SPierre Jolivet NULL, 18568bb0f5c6SPierre Jolivet NULL, 18578bb0f5c6SPierre Jolivet NULL, 18588bb0f5c6SPierre Jolivet NULL, 1859421480d9SBarry Smith /*104*/ NULL, 18608bb0f5c6SPierre Jolivet NULL, 18618bb0f5c6SPierre Jolivet NULL, 18628bb0f5c6SPierre Jolivet NULL, 18638bb0f5c6SPierre Jolivet NULL, 1864f4259b30SLisandro Dalcin /*109*/ NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 18688bb0f5c6SPierre Jolivet NULL, 1869f4259b30SLisandro Dalcin /*114*/ NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin /*119*/ NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin NULL, 1879f4259b30SLisandro Dalcin /*124*/ NULL, 1880f4259b30SLisandro Dalcin NULL, 18818bb0f5c6SPierre Jolivet MatSetBlockSizes_Default, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 1884421480d9SBarry Smith /*129*/ NULL, 18858bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888421480d9SBarry Smith NULL, 1889f4259b30SLisandro Dalcin /*134*/ NULL, 1890f4259b30SLisandro Dalcin NULL, 1891eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 18924cc2b5b5SPierre Jolivet NULL, 189342ce410bSJunchao Zhang NULL, 1894421480d9SBarry Smith /*139*/ NULL, 189542ce410bSJunchao Zhang NULL, 189603db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 1897c2be7ffeSStefano Zampini NULL, 189803db1824SAlex Lindsay NULL}; 1899a30f8f8cSSatish Balay 190066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1901d71ae5a4SJacob Faibussowitsch { 1902476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1903535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19045d2a9ed1SStefano Zampini PetscMPIInt size; 1905a23d5eceSKris Buschelman 1906a23d5eceSKris Buschelman PetscFunctionBegin; 1907ad79cf63SBarry Smith if (B->hash_active) { 1908aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1909ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1910ad79cf63SBarry Smith } 1911ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 191258b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs)); 19139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19149566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19159566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19165f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19175f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1918899cda47SBarry Smith 1919d0f46423SBarry Smith mbs = B->rmap->n / bs; 1920d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19215f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1922a23d5eceSKris Buschelman 1923d0f46423SBarry Smith B->rmap->bs = bs; 1924a23d5eceSKris Buschelman b->bs2 = bs * bs; 1925a23d5eceSKris Buschelman b->mbs = mbs; 1926a23d5eceSKris Buschelman b->Mbs = Mbs; 1927de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1928de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1929a23d5eceSKris Buschelman 1930ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1931d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1932d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1933a23d5eceSKris Buschelman 1934d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1935d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1936a23d5eceSKris Buschelman 1937cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1938eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 1939cb7b82ddSBarry Smith #else 19409566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1941cb7b82ddSBarry Smith #endif 19429566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 19449566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 19459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 19469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 19479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 19489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 19499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 19509566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1951cb7b82ddSBarry Smith 19529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 1953c508b908SBarry Smith 1954c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 19559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19569566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 19579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 19589566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 1959c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 1960cb7b82ddSBarry Smith 1961c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 1962ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 19639566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 19649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 19659566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 1966c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 1967a23d5eceSKris Buschelman 19689566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 19699566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 197026fbe8dcSKarl Rupp 1971526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1972cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1973cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1975a23d5eceSKris Buschelman } 1976a23d5eceSKris Buschelman 197766976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 1978d71ae5a4SJacob Faibussowitsch { 197902106b30SBarry Smith PetscInt m, rstart, cend; 1980f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 1981f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 1982f4259b30SLisandro Dalcin PetscScalar *values = NULL; 1983bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 19843bd0feecSPierre Jolivet PetscBool nooffprocentries; 1985dfb205c3SBarry Smith 1986dfb205c3SBarry Smith PetscFunctionBegin; 19875f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 19889566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 19899566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 19909566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19929566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 1993dfb205c3SBarry Smith m = B->rmap->n / bs; 1994dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 1995dfb205c3SBarry Smith cend = B->cmap->rend / bs; 1996dfb205c3SBarry Smith 19975f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 19989566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 1999dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2000dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20015f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20024cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2003dfb205c3SBarry Smith JJ = jj + ii[i]; 20040cd7f59aSBarry Smith bd = 0; 2005dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20060cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2007dfb205c3SBarry Smith JJ++; 20080cd7f59aSBarry Smith bd++; 2009dfb205c3SBarry Smith } 2010dfb205c3SBarry Smith d = 0; 2011dfb205c3SBarry Smith for (; j < nz; j++) { 2012dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2013dfb205c3SBarry Smith d++; 2014dfb205c3SBarry Smith } 2015dfb205c3SBarry Smith d_nnz[i] = d; 20160cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20170cd7f59aSBarry Smith nz = nz - bd; 20180cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2019dfb205c3SBarry Smith } 20209566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20219566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20229566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2023dfb205c3SBarry Smith 2024dfb205c3SBarry Smith values = (PetscScalar *)V; 202548a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2026dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2027dfb205c3SBarry Smith PetscInt row = i + rstart; 2028dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2029dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2030bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2031dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20329566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2033bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2034bb80cfbbSStefano Zampini PetscInt j; 20350cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20360cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20379566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20380cd7f59aSBarry Smith } 20390cd7f59aSBarry Smith } 2040dfb205c3SBarry Smith } 2041dfb205c3SBarry Smith 20429566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20433bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20443bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 20459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 20469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 20473bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20483bd0feecSPierre Jolivet 20499566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 20503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2051dfb205c3SBarry Smith } 2052dfb205c3SBarry Smith 20530bad9183SKris Buschelman /*MC 2054fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2055828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2056828413b8SBarry Smith the matrix is stored. 2057828413b8SBarry Smith 2058828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 205911a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 20600bad9183SKris Buschelman 20612ef1f0ffSBarry Smith Options Database Key: 206211a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 20630bad9183SKris Buschelman 20642ef1f0ffSBarry Smith Level: beginner 20652ef1f0ffSBarry Smith 206611a5261eSBarry Smith Note: 2067476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2068476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2069476417e5SBarry Smith 20701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20710bad9183SKris Buschelman M*/ 20720bad9183SKris Buschelman 2073d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2074d71ae5a4SJacob Faibussowitsch { 2075b5df2d14SHong Zhang Mat_MPISBAIJ *b; 207694ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2077b5df2d14SHong Zhang 2078b5df2d14SHong Zhang PetscFunctionBegin; 20794dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2080b0a32e0cSBarry Smith B->data = (void *)b; 2081aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2082b5df2d14SHong Zhang 2083b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2084b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2085b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2086b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 208726fbe8dcSKarl Rupp 20889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 20899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2090b5df2d14SHong Zhang 2091b5df2d14SHong Zhang /* build local table of row and column ownerships */ 20929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2093b5df2d14SHong Zhang 2094b5df2d14SHong Zhang /* build cache for off array entries formed */ 20959566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 209626fbe8dcSKarl Rupp 2097b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20980298fd71SBarry Smith b->colmap = NULL; 20990298fd71SBarry Smith b->garray = NULL; 2100b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2101b5df2d14SHong Zhang 2102b5df2d14SHong Zhang /* stuff used in block assembly */ 2103f4259b30SLisandro Dalcin b->barray = NULL; 2104b5df2d14SHong Zhang 2105b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2106f4259b30SLisandro Dalcin b->lvec = NULL; 2107f4259b30SLisandro Dalcin b->Mvctx = NULL; 2108f4259b30SLisandro Dalcin b->slvec0 = NULL; 2109f4259b30SLisandro Dalcin b->slvec0b = NULL; 2110f4259b30SLisandro Dalcin b->slvec1 = NULL; 2111f4259b30SLisandro Dalcin b->slvec1a = NULL; 2112f4259b30SLisandro Dalcin b->slvec1b = NULL; 2113f4259b30SLisandro Dalcin b->sMvctx = NULL; 2114b5df2d14SHong Zhang 2115b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2116f4259b30SLisandro Dalcin b->rowindices = NULL; 2117f4259b30SLisandro Dalcin b->rowvalues = NULL; 2118b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2119b5df2d14SHong Zhang 2120b5df2d14SHong Zhang /* hash table stuff */ 2121f4259b30SLisandro Dalcin b->ht = NULL; 2122f4259b30SLisandro Dalcin b->hd = NULL; 2123b5df2d14SHong Zhang b->ht_size = 0; 2124b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2125b5df2d14SHong Zhang b->ht_fact = 0; 2126b5df2d14SHong Zhang b->ht_total_ct = 0; 2127b5df2d14SHong Zhang b->ht_insert_ct = 0; 2128b5df2d14SHong Zhang 21297dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21307a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21317a868f3eSHong Zhang 2132f4259b30SLisandro Dalcin b->in_loc = NULL; 2133f4259b30SLisandro Dalcin b->v_loc = NULL; 213459ffdab8SBarry Smith b->n_loc = 0; 213594ae4db5SBarry Smith 21369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21406214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 21426214f412SHong Zhang #endif 2143d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 21449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2145d24d4204SJose E. Roman #endif 21469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 21479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2148aa5a9175SDahai Guo 2149b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2150b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2151b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2152b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2153b0c98d1dSPierre Jolivet #if !defined(PETSC_USE_COMPLEX) 2154b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2155eb1ec7c1SStefano Zampini #endif 215613647f61SHong Zhang 21579566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2158d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 21599566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 216094ae4db5SBarry Smith if (flg) { 216194ae4db5SBarry Smith PetscReal fact = 1.39; 21629566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 21639566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 216494ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21659566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 21669566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 216794ae4db5SBarry Smith } 2168d0609cedSBarry Smith PetscOptionsEnd(); 21693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2170b5df2d14SHong Zhang } 2171b5df2d14SHong Zhang 21722920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2173209238afSKris Buschelman /*MC 2174002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2175209238afSKris Buschelman 217611a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 217711a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2178209238afSKris Buschelman 217911a5261eSBarry Smith Options Database Key: 2180c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2181209238afSKris Buschelman 2182209238afSKris Buschelman Level: beginner 2183209238afSKris Buschelman 21841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2185209238afSKris Buschelman M*/ 2186209238afSKris Buschelman 21875d83a8b1SBarry Smith /*@ 2188b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2189b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2190b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2191b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2192b5df2d14SHong Zhang 2193c3339decSBarry Smith Collective 2194b5df2d14SHong Zhang 2195b5df2d14SHong Zhang Input Parameters: 21961c4f3114SJed Brown + B - the matrix 2197bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2198bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2199b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2200b5df2d14SHong Zhang submatrix (same for all local rows) 2201b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22026d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22032ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 220495742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2205b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2206b5df2d14SHong Zhang submatrix (same for all local rows). 2207b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2208c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22092ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2210b5df2d14SHong Zhang 2211b5df2d14SHong Zhang Options Database Keys: 2212a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2213b5df2d14SHong Zhang block calculations (much slower) 2214a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2215b5df2d14SHong Zhang 22162ef1f0ffSBarry Smith Level: intermediate 22172ef1f0ffSBarry Smith 2218b5df2d14SHong Zhang Notes: 2219b5df2d14SHong Zhang 222011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2221b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2222b5df2d14SHong Zhang 222349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 222449a6f317SBarry Smith 2225b5df2d14SHong Zhang Storage Information: 2226b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2227b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2228b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2229b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2230b5df2d14SHong Zhang 2231b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22322ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22332ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2234b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22352ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2236b5df2d14SHong Zhang 223711a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2238aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 22392ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2240aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2241aa95bbe8SBarry Smith 2242b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2243b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2244b5df2d14SHong Zhang 2245b5df2d14SHong Zhang .vb 2246b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2247a4b1a0f6SJed Brown -------------------------- 2248c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2249c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2250c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2251a4b1a0f6SJed Brown -------------------------- 2252b5df2d14SHong Zhang .ve 2253b5df2d14SHong Zhang 2254b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2255b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22566d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 225711a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2258b5df2d14SHong Zhang 22592ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 22606d10fdaeSSatish Balay plus the diagonal part of the d matrix, 22612ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2262c2fc9fa9SBarry Smith 2263b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 22642ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2265b5df2d14SHong Zhang 22661cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2267b5df2d14SHong Zhang @*/ 2268d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2269d71ae5a4SJacob Faibussowitsch { 2270b5df2d14SHong Zhang PetscFunctionBegin; 22716ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 22726ba663aaSJed Brown PetscValidType(B, 1); 22736ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2274cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 22753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2276b5df2d14SHong Zhang } 2277b5df2d14SHong Zhang 22782920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 22795d83a8b1SBarry Smith /*@ 228011a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2281a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2282a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 228320f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2284a30f8f8cSSatish Balay 2285d083f849SBarry Smith Collective 2286a30f8f8cSSatish Balay 2287a30f8f8cSSatish Balay Input Parameters: 2288a30f8f8cSSatish Balay + comm - MPI communicator 228911a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 229020f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 229120f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2292a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2293a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 229420f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2295a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2296a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 229720f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 229820f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2299a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2300a30f8f8cSSatish Balay submatrix (same for all local rows) 2301a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23026d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23032ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 230495742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 230595742e49SBarry Smith set its value even if it is zero. 2306a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2307a30f8f8cSSatish Balay submatrix (same for all local rows). 2308a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2309a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23102ef1f0ffSBarry Smith each block row) or `NULL`. 2311a30f8f8cSSatish Balay 2312a30f8f8cSSatish Balay Output Parameter: 2313a30f8f8cSSatish Balay . A - the matrix 2314a30f8f8cSSatish Balay 2315a30f8f8cSSatish Balay Options Database Keys: 2316a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2317a30f8f8cSSatish Balay block calculations (much slower) 2318a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2319a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2320a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2321a30f8f8cSSatish Balay 23222ef1f0ffSBarry Smith Level: intermediate 23232ef1f0ffSBarry Smith 23242ef1f0ffSBarry Smith Notes: 232577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2326f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 232711a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2328175b88e8SBarry Smith 2329d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23306d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2331d1be2dadSMatthew Knepley 2332a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2333a30f8f8cSSatish Balay (possibly both). 2334a30f8f8cSSatish Balay 233511a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2336a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2337a30f8f8cSSatish Balay 2338727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by 2339727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 2340727bdf9bSBarry Smith 234149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 234249a6f317SBarry Smith 2343a30f8f8cSSatish Balay Storage Information: 2344a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2345a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2346a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2347a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2348a30f8f8cSSatish Balay 2349a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 23502ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 23512ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2352a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 23532ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2354a30f8f8cSSatish Balay 2355a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2356a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2357a30f8f8cSSatish Balay 2358a30f8f8cSSatish Balay .vb 2359a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2360a4b1a0f6SJed Brown -------------------------- 2361c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2362c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2363c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2364a4b1a0f6SJed Brown -------------------------- 2365a30f8f8cSSatish Balay .ve 2366a30f8f8cSSatish Balay 2367a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2368a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23696d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23702ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2371a30f8f8cSSatish Balay 23722ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23736d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23742ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2375a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 23762ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2377a30f8f8cSSatish Balay 2378727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, 2379727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 2380a30f8f8cSSatish Balay @*/ 2381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2382d71ae5a4SJacob Faibussowitsch { 23831302d50aSBarry Smith PetscMPIInt size; 2384a30f8f8cSSatish Balay 2385a30f8f8cSSatish Balay PetscFunctionBegin; 23869566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 23879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 23889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2389273d9f13SBarry Smith if (size > 1) { 23909566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 23919566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2392273d9f13SBarry Smith } else { 23939566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 23949566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2395273d9f13SBarry Smith } 23963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2397a30f8f8cSSatish Balay } 2398a30f8f8cSSatish Balay 2399d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2400d71ae5a4SJacob Faibussowitsch { 2401a30f8f8cSSatish Balay Mat mat; 2402a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2403d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2404387bc808SHong Zhang PetscScalar *array; 2405a30f8f8cSSatish Balay 2406a30f8f8cSSatish Balay PetscFunctionBegin; 2407f4259b30SLisandro Dalcin *newmat = NULL; 240826fbe8dcSKarl Rupp 24099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24119566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24129566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24139566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2414e1b6402fSHong Zhang 2415420957c1SBarry Smith if (matin->hash_active) { 2416420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2417420957c1SBarry Smith } else { 2418d5f3da31SBarry Smith mat->factortype = matin->factortype; 2419273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 242082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24217fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24227fff6886SHong Zhang 2423b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2424a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2425a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2426a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2427a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2428a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2429a30f8f8cSSatish Balay 2430a30f8f8cSSatish Balay a->size = oldmat->size; 2431a30f8f8cSSatish Balay a->rank = oldmat->rank; 2432a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2433a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2434f4259b30SLisandro Dalcin a->rowindices = NULL; 2435f4259b30SLisandro Dalcin a->rowvalues = NULL; 2436a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2437f4259b30SLisandro Dalcin a->barray = NULL; 2438899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2439899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2440899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2441899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2442a30f8f8cSSatish Balay 2443a30f8f8cSSatish Balay /* hash table stuff */ 2444f4259b30SLisandro Dalcin a->ht = NULL; 2445f4259b30SLisandro Dalcin a->hd = NULL; 2446a30f8f8cSSatish Balay a->ht_size = 0; 2447a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2448a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2449a30f8f8cSSatish Balay a->ht_total_ct = 0; 2450a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2451a30f8f8cSSatish Balay 24529566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2453a30f8f8cSSatish Balay if (oldmat->colmap) { 2454a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2455eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2456a30f8f8cSSatish Balay #else 24579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 24589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2459a30f8f8cSSatish Balay #endif 2460f4259b30SLisandro Dalcin } else a->colmap = NULL; 2461387bc808SHong Zhang 2462f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 24639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 24649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2465f4259b30SLisandro Dalcin } else a->garray = NULL; 2466a30f8f8cSSatish Balay 24679566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 24689566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 24699566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 247082327fa8SHong Zhang 24719566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 24729566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2473387bc808SHong Zhang 24749566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 24759566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 24769566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 24779566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 24789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 24799566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 24809566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 24819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2482387bc808SHong Zhang 2483387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 24849566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2485387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 248682327fa8SHong Zhang 24879566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 24889566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2489420957c1SBarry Smith } 24909566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2491a30f8f8cSSatish Balay *newmat = mat; 24923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2493a30f8f8cSSatish Balay } 2494a30f8f8cSSatish Balay 2495618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2496618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2497618cc2edSLisandro Dalcin 24986cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2499d71ae5a4SJacob Faibussowitsch { 25007f489da9SVaclav Hapla PetscBool isbinary; 250195936485SShri Abhyankar 250295936485SShri Abhyankar PetscFunctionBegin; 25039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25045f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25059566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 250795936485SShri Abhyankar } 250895936485SShri Abhyankar 2509789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2510d71ae5a4SJacob Faibussowitsch { 251124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2512f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data; 2513ca54ac64SHong Zhang PetscReal atmp; 251487828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25151302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25161302d50aSBarry Smith PetscMPIInt rank, size; 25176497c311SBarry Smith PetscInt *rowners_bs, count, source; 251887828ca2SBarry Smith PetscScalar *va; 25198a1c53f2SBarry Smith MatScalar *ba; 2520f4c0e9e4SHong Zhang MPI_Status stat; 252124d5174aSHong Zhang 252224d5174aSHong Zhang PetscFunctionBegin; 25235f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25249566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25259566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2526f4c0e9e4SHong Zhang 25279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2529f4c0e9e4SHong Zhang 2530d0f46423SBarry Smith bs = A->rmap->bs; 2531f4c0e9e4SHong Zhang mbs = a->mbs; 2532f4c0e9e4SHong Zhang Mbs = a->Mbs; 2533f4c0e9e4SHong Zhang ba = b->a; 2534f4c0e9e4SHong Zhang bi = b->i; 2535f4c0e9e4SHong Zhang bj = b->j; 2536f4c0e9e4SHong Zhang 2537f4c0e9e4SHong Zhang /* find ownerships */ 2538d0f46423SBarry Smith rowners_bs = A->rmap->range; 2539f4c0e9e4SHong Zhang 2540f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2542f4c0e9e4SHong Zhang 2543f4c0e9e4SHong Zhang /* row_max for B */ 2544b8475685SHong Zhang if (rank != size - 1) { 2545f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 25469371c9d4SSatish Balay ncols = bi[1] - bi[0]; 25479371c9d4SSatish Balay bi++; 2548f4c0e9e4SHong Zhang brow = bs * i; 2549f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2550f4c0e9e4SHong Zhang bcol = bs * (*bj); 2551f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2552ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 255304d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2554f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 25559371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 25569371c9d4SSatish Balay ba++; 2557ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2558ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2559f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2560f4c0e9e4SHong Zhang } 2561f4c0e9e4SHong Zhang } 2562f4c0e9e4SHong Zhang bj++; 2563f4c0e9e4SHong Zhang } 2564f4c0e9e4SHong Zhang } 2565f4c0e9e4SHong Zhang 2566f4c0e9e4SHong Zhang /* send values to its owners */ 25676497c311SBarry Smith for (PetscMPIInt dest = rank + 1; dest < size; dest++) { 2568f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2569ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 25706497c311SBarry Smith PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2571ca54ac64SHong Zhang } 2572f4c0e9e4SHong Zhang } 2573f4c0e9e4SHong Zhang 2574f4c0e9e4SHong Zhang /* receive values */ 2575ca54ac64SHong Zhang if (rank) { 2576f4c0e9e4SHong Zhang rvalues = work; 2577ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2578f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 25796497c311SBarry Smith PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2580f4c0e9e4SHong Zhang /* process values */ 2581f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2582ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2583f4c0e9e4SHong Zhang } 2584f4c0e9e4SHong Zhang } 2585ca54ac64SHong Zhang } 2586f4c0e9e4SHong Zhang 25879566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 25889566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 25893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 259024d5174aSHong Zhang } 25912798e883SHong Zhang 2592789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2593d71ae5a4SJacob Faibussowitsch { 25942798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2595d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 25963649974fSBarry Smith PetscScalar *x, *ptr, *from; 2597ffe4fb16SHong Zhang Vec bb1; 25983649974fSBarry Smith const PetscScalar *b; 2599ffe4fb16SHong Zhang 2600ffe4fb16SHong Zhang PetscFunctionBegin; 26015f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26025f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2603ffe4fb16SHong Zhang 2604a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26059566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2607a2b30743SBarry Smith } 2608a2b30743SBarry Smith 2609ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2610ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26119566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2612ffe4fb16SHong Zhang its--; 2613ffe4fb16SHong Zhang } 2614ffe4fb16SHong Zhang 26159566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2616ffe4fb16SHong Zhang while (its--) { 2617ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26189566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2619ffe4fb16SHong Zhang 2620ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26219566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26229566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2625ffe4fb16SHong Zhang 26269566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2627ffe4fb16SHong Zhang 2628ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26299566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26309566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26319566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2633ffe4fb16SHong Zhang 2634ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2635629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2636629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2637ffe4fb16SHong Zhang 26389566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26419566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2642ffe4fb16SHong Zhang 2643ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26449566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2645ffe4fb16SHong Zhang 2646ffe4fb16SHong Zhang /* local diagonal sweep */ 26479566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2648ffe4fb16SHong Zhang } 26499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2650fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26519566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2652fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2654fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2655fa22f6d0SBarry Smith Vec xx1; 2656ace3abfcSBarry Smith PetscBool hasop; 265720f1ed55SBarry Smith const PetscScalar *diag; 2658887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 265920f1ed55SBarry Smith PetscInt i, n; 2660fa22f6d0SBarry Smith 2661fa22f6d0SBarry Smith if (!mat->xx1) { 26629566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 26639566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2664fa22f6d0SBarry Smith } 2665fa22f6d0SBarry Smith xx1 = mat->xx1; 2666fa22f6d0SBarry Smith bb1 = mat->bb1; 2667fa22f6d0SBarry Smith 26689566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2669fa22f6d0SBarry Smith 2670fa22f6d0SBarry Smith if (!mat->diag) { 2671effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 26739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2674fa22f6d0SBarry Smith } 26759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2676fa22f6d0SBarry Smith 2677fa22f6d0SBarry Smith if (hasop) { 26789566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 26799566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 268020f1ed55SBarry Smith } else { 268120f1ed55SBarry Smith /* 268220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 26839566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 26849566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 268520f1ed55SBarry Smith */ 26869566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 26879566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 26889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26899566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26909566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2691887ee2caSBarry Smith if (omega == 1.0) { 269226fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 26939566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2694887ee2caSBarry Smith } else { 269526fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 26969566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2697887ee2caSBarry Smith } 26989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 26999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 270220f1ed55SBarry Smith } 2703fa22f6d0SBarry Smith 2704fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2705629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2706629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27079566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27089566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27099566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27109566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27129566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27139566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27149566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27159566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2716fa22f6d0SBarry Smith 2717fa22f6d0SBarry Smith /* local sweep */ 27189566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27199566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2720f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722ffe4fb16SHong Zhang } 2723ffe4fb16SHong Zhang 2724dfb205c3SBarry Smith /*@ 2725d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2726dfb205c3SBarry Smith 2727d083f849SBarry Smith Collective 2728dfb205c3SBarry Smith 2729dfb205c3SBarry Smith Input Parameters: 2730dfb205c3SBarry Smith + comm - MPI communicator 2731dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 273211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2733dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2734d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 27352ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27362ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27372ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2738483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2739dfb205c3SBarry Smith . j - column indices 2740dfb205c3SBarry Smith - a - matrix values 2741dfb205c3SBarry Smith 2742dfb205c3SBarry Smith Output Parameter: 2743dfb205c3SBarry Smith . mat - the matrix 2744dfb205c3SBarry Smith 2745dfb205c3SBarry Smith Level: intermediate 2746dfb205c3SBarry Smith 2747dfb205c3SBarry Smith Notes: 27482ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 27492ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 27502ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2751dfb205c3SBarry Smith 27522ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2753dfb205c3SBarry Smith 27541cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2755d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2756dfb205c3SBarry Smith @*/ 2757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2758d71ae5a4SJacob Faibussowitsch { 2759dfb205c3SBarry Smith PetscFunctionBegin; 27605f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 27615f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 27629566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 27639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 27649566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 27659566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 27663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2767dfb205c3SBarry Smith } 2768dfb205c3SBarry Smith 27695d83a8b1SBarry Smith /*@ 277011a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2771dfb205c3SBarry Smith 2772d083f849SBarry Smith Collective 2773dfb205c3SBarry Smith 2774dfb205c3SBarry Smith Input Parameters: 27751c4f3114SJed Brown + B - the matrix 2776dfb205c3SBarry Smith . bs - the block size 2777d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2778d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2779d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2780dfb205c3SBarry Smith 2781664954b6SBarry Smith Level: advanced 2782664954b6SBarry Smith 2783664954b6SBarry Smith Notes: 2784d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2785d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2786d8a51d2aSBarry Smith called this routine. 2787d8a51d2aSBarry Smith 27880cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 27890cd7f59aSBarry Smith and usually the numerical values as well 27900cd7f59aSBarry Smith 2791d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2792dfb205c3SBarry Smith 2793d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2794d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2795dfb205c3SBarry Smith @*/ 2796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2797d71ae5a4SJacob Faibussowitsch { 2798dfb205c3SBarry Smith PetscFunctionBegin; 2799cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2801dfb205c3SBarry Smith } 2802dfb205c3SBarry Smith 2803d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2804d71ae5a4SJacob Faibussowitsch { 280510c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 280610c56fdeSHong Zhang PetscInt *indx; 280710c56fdeSHong Zhang PetscScalar *values; 2808dfb205c3SBarry Smith 28094dcd73b1SHong Zhang PetscFunctionBegin; 28109566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 281110c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 281210c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2813de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 281410c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2815de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28164dcd73b1SHong Zhang 28179566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28189371c9d4SSatish Balay mbs = m / bs; 28199371c9d4SSatish Balay Nbs = N / cbs; 282048a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2821da91a574SPierre Jolivet nbs = n / cbs; 28224dcd73b1SHong Zhang 28239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2824d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2825de25e9cbSPierre Jolivet 28269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2828de25e9cbSPierre Jolivet if (rank == size - 1) { 2829de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28305f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2831de25e9cbSPierre Jolivet } 2832de25e9cbSPierre Jolivet 2833d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28349566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 283510c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28369566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28374dcd73b1SHong Zhang nnz = nnz / bs; 28384dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 28399566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 28409566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28414dcd73b1SHong Zhang } 28429566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28439566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28444dcd73b1SHong Zhang 28459566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 28469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 28479566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 28489566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 28499566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 28509566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2851d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 28524dcd73b1SHong Zhang } 28534dcd73b1SHong Zhang 285410c56fdeSHong Zhang /* numeric phase */ 28559566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28569566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 28574dcd73b1SHong Zhang 28589566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 28594dcd73b1SHong Zhang for (i = 0; i < m; i++) { 28609566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28614dcd73b1SHong Zhang Ii = i + rstart; 28629566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 28639566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28644dcd73b1SHong Zhang } 28659566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 28679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 28683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28694dcd73b1SHong Zhang } 2870