xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision e44c0bd4a30299a57e25b55a35779df0f2d5f5b5)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
101085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
103a30f8f8cSSatish Balay       N = nrow++ - 1;  \
104a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
105a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
106a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
107a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
110a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
111a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
112a30f8f8cSSatish Balay       a_noinsert:; \
113a30f8f8cSSatish Balay     ailen[brow] = nrow; \
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
116a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
117a30f8f8cSSatish Balay { \
118a30f8f8cSSatish Balay     brow = row/bs;  \
119a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
120a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
121a30f8f8cSSatish Balay       bcol = col/bs; \
122a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
123a30f8f8cSSatish Balay       low = 0; high = nrow; \
124a30f8f8cSSatish Balay       while (high-low > 3) { \
125a30f8f8cSSatish Balay         t = (low+high)/2; \
126a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
127a30f8f8cSSatish Balay         else              low  = t; \
128a30f8f8cSSatish Balay       } \
129a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
130a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
131a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
132a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
133a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
134a30f8f8cSSatish Balay           else                    *bap  = value;  \
135a30f8f8cSSatish Balay           goto b_noinsert; \
136a30f8f8cSSatish Balay         } \
137a30f8f8cSSatish Balay       } \
138a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
139085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
140421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       b_noinsert:; \
151a30f8f8cSSatish Balay     bilen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #endif
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1564a2ae208SSatish Balay #undef __FUNCT__
1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
159a30f8f8cSSatish Balay {
160a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
161dfbe8321SBarry Smith   PetscErrorCode ierr;
1621302d50aSBarry Smith   PetscInt       i,N = m*n;
163a30f8f8cSSatish Balay   MatScalar      *vsingle;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   PetscFunctionBegin;
166a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
16705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
16882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
169a30f8f8cSSatish Balay     b->setvalueslen  = N;
170a30f8f8cSSatish Balay   }
171a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
172a30f8f8cSSatish Balay 
173a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
174a30f8f8cSSatish Balay     vsingle[i] = v[i];
175a30f8f8cSSatish Balay   }
176a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
177a30f8f8cSSatish Balay   PetscFunctionReturn(0);
178a30f8f8cSSatish Balay }
179a30f8f8cSSatish Balay 
1804a2ae208SSatish Balay #undef __FUNCT__
1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
183a30f8f8cSSatish Balay {
184a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
185dfbe8321SBarry Smith   PetscErrorCode ierr;
1861302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
187a30f8f8cSSatish Balay   MatScalar      *vsingle;
188a30f8f8cSSatish Balay 
189a30f8f8cSSatish Balay   PetscFunctionBegin;
190a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
19105b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
19282502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
193a30f8f8cSSatish Balay     b->setvalueslen  = N;
194a30f8f8cSSatish Balay   }
195a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
196a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
197a30f8f8cSSatish Balay     vsingle[i] = v[i];
198a30f8f8cSSatish Balay   }
199a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
201a30f8f8cSSatish Balay }
202a30f8f8cSSatish Balay #endif
203a30f8f8cSSatish Balay 
204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
205a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
206a30f8f8cSSatish Balay */
2074a2ae208SSatish Balay #undef __FUNCT__
208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar"
2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
210a30f8f8cSSatish Balay {
211a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
212a30f8f8cSSatish Balay   MatScalar      value;
213b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
214dfbe8321SBarry Smith   PetscErrorCode ierr;
2151302d50aSBarry Smith   PetscInt       i,j,row,col;
216899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
217899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
218899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
219a30f8f8cSSatish Balay 
220a30f8f8cSSatish Balay   /* Some Variables required in the macro */
221a30f8f8cSSatish Balay   Mat            A = baij->A;
222a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2231302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
224a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
225a30f8f8cSSatish Balay 
226a30f8f8cSSatish Balay   Mat            B = baij->B;
227a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2281302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
229a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
230a30f8f8cSSatish Balay 
2311302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2321302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
233a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
234a30f8f8cSSatish Balay 
235a30f8f8cSSatish Balay   /* for stash */
236910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
237910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
238a30f8f8cSSatish Balay 
239a30f8f8cSSatish Balay   PetscFunctionBegin;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   if (!baij->donotstash){
24259ffdab8SBarry Smith     if (n > baij->n_loc) {
24359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
24559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
24659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
24759ffdab8SBarry Smith       baij->n_loc = n;
24859ffdab8SBarry Smith     }
24959ffdab8SBarry Smith     in_loc = baij->in_loc;
25059ffdab8SBarry Smith     v_loc  = baij->v_loc;
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
254a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
256899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
257a30f8f8cSSatish Balay #endif
258a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
259a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
260a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
26201b2bd88SHong Zhang           if (a->ignore_ltriangular){
26301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26401b2bd88SHong Zhang           } else {
2654e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
26601b2bd88SHong Zhang           }
26701b2bd88SHong Zhang         }
268a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
269a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
270a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
271a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
272a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
273a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
274a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
275a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
277899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
278a30f8f8cSSatish Balay #endif
279a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
280a30f8f8cSSatish Balay           if (mat->was_assembled) {
281a30f8f8cSSatish Balay             if (!baij->colmap) {
282653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
283a30f8f8cSSatish Balay             }
284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
285a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28671730473SSatish Balay             col  = col - 1;
287a30f8f8cSSatish Balay #else
28871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
289a30f8f8cSSatish Balay #endif
290a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
291a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
292a30f8f8cSSatish Balay               col =  in[j];
293a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
294a30f8f8cSSatish Balay               B = baij->B;
295a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
296a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
297a30f8f8cSSatish Balay               ba=b->a;
29871730473SSatish Balay             } else col += in[j]%bs;
299a30f8f8cSSatish Balay           } else col = in[j];
300a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
301a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
302a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
303a30f8f8cSSatish Balay         }
304a30f8f8cSSatish Balay       }
305a30f8f8cSSatish Balay     } else {  /* off processor entry */
306a30f8f8cSSatish Balay       if (!baij->donotstash) {
307a30f8f8cSSatish Balay         n_loc = 0;
308a30f8f8cSSatish Balay         for (j=0; j<n; j++){
309f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
310a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
311a30f8f8cSSatish Balay           if (roworiented) {
312a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
313a30f8f8cSSatish Balay           } else {
314a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
315a30f8f8cSSatish Balay           }
316a30f8f8cSSatish Balay           n_loc++;
317a30f8f8cSSatish Balay         }
318a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
319a30f8f8cSSatish Balay       }
320a30f8f8cSSatish Balay     }
321a30f8f8cSSatish Balay   }
322a30f8f8cSSatish Balay   PetscFunctionReturn(0);
323a30f8f8cSSatish Balay }
324a30f8f8cSSatish Balay 
3254a2ae208SSatish Balay #undef __FUNCT__
326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
328a30f8f8cSSatish Balay {
3290880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
330f15d580aSBarry Smith   const MatScalar *value;
331f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3320880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
333dfbe8321SBarry Smith   PetscErrorCode  ierr;
334899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
335899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
336899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
3370880e062SHong Zhang 
338a30f8f8cSSatish Balay   PetscFunctionBegin;
3390880e062SHong Zhang   if(!barray) {
3400880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3410880e062SHong Zhang     baij->barray = barray;
3420880e062SHong Zhang   }
3430880e062SHong Zhang 
3440880e062SHong Zhang   if (roworiented) {
3450880e062SHong Zhang     stepval = (n-1)*bs;
3460880e062SHong Zhang   } else {
3470880e062SHong Zhang     stepval = (m-1)*bs;
3480880e062SHong Zhang   }
3490880e062SHong Zhang   for (i=0; i<m; i++) {
3500880e062SHong Zhang     if (im[i] < 0) continue;
3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
35277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3530880e062SHong Zhang #endif
3540880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3550880e062SHong Zhang       row = im[i] - rstart;
3560880e062SHong Zhang       for (j=0; j<n; j++) {
3570880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3580880e062SHong Zhang         if ((roworiented) && (n == 1)) {
359f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3600880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
361f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3620880e062SHong Zhang         } else { /* Here a copy is required */
3630880e062SHong Zhang           if (roworiented) {
3640880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3650880e062SHong Zhang           } else {
3660880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3670880e062SHong Zhang           }
3680880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3690880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3700880e062SHong Zhang               *barray++  = *value++;
3710880e062SHong Zhang             }
3720880e062SHong Zhang           }
3730880e062SHong Zhang           barray -=bs2;
3740880e062SHong Zhang         }
3750880e062SHong Zhang 
3760880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3770880e062SHong Zhang           col  = in[j] - cstart;
3780880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3790880e062SHong Zhang         }
3800880e062SHong Zhang         else if (in[j] < 0) continue;
3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
38277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3830880e062SHong Zhang #endif
3840880e062SHong Zhang         else {
3850880e062SHong Zhang           if (mat->was_assembled) {
3860880e062SHong Zhang             if (!baij->colmap) {
387653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3880880e062SHong Zhang             }
3890880e062SHong Zhang 
3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3921302d50aSBarry Smith             { PetscInt data;
3930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3940880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3950880e062SHong Zhang             }
3960880e062SHong Zhang #else
3970880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3980880e062SHong Zhang #endif
3990880e062SHong Zhang #endif
4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4010880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4020880e062SHong Zhang             col  = (col - 1)/bs;
4030880e062SHong Zhang #else
4040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4050880e062SHong Zhang #endif
4060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4070880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4080880e062SHong Zhang               col =  in[j];
4090880e062SHong Zhang             }
4100880e062SHong Zhang           }
4110880e062SHong Zhang           else col = in[j];
412e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4130880e062SHong Zhang         }
4140880e062SHong Zhang       }
4150880e062SHong Zhang     } else {
4160880e062SHong Zhang       if (!baij->donotstash) {
4170880e062SHong Zhang         if (roworiented) {
4180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4190880e062SHong Zhang         } else {
4200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4210880e062SHong Zhang         }
4220880e062SHong Zhang       }
4230880e062SHong Zhang     }
4240880e062SHong Zhang   }
4250880e062SHong Zhang   PetscFunctionReturn(0);
426a30f8f8cSSatish Balay }
427a30f8f8cSSatish Balay 
4284a2ae208SSatish Balay #undef __FUNCT__
4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
431a30f8f8cSSatish Balay {
432f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4336849ba73SBarry Smith   PetscErrorCode ierr;
434899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
435899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
436a30f8f8cSSatish Balay 
437a30f8f8cSSatish Balay   PetscFunctionBegin;
438a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43997e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
440899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
441a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
442a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
443a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
44497e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
445899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
446a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
447a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
448c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
449a30f8f8cSSatish Balay         } else {
450a30f8f8cSSatish Balay           if (!baij->colmap) {
451653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
452a30f8f8cSSatish Balay           }
453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
454a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
455a30f8f8cSSatish Balay           data --;
456a30f8f8cSSatish Balay #else
457a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
458a30f8f8cSSatish Balay #endif
459a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
460a30f8f8cSSatish Balay           else {
461a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
462e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
463a30f8f8cSSatish Balay           }
464a30f8f8cSSatish Balay         }
465a30f8f8cSSatish Balay       }
466a30f8f8cSSatish Balay     } else {
46729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
468a30f8f8cSSatish Balay     }
469a30f8f8cSSatish Balay   }
470a30f8f8cSSatish Balay  PetscFunctionReturn(0);
471a30f8f8cSSatish Balay }
472a30f8f8cSSatish Balay 
4734a2ae208SSatish Balay #undef __FUNCT__
4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
476a30f8f8cSSatish Balay {
477a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
478dfbe8321SBarry Smith   PetscErrorCode ierr;
479a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
480a30f8f8cSSatish Balay 
481a30f8f8cSSatish Balay   PetscFunctionBegin;
482a30f8f8cSSatish Balay   if (baij->size == 1) {
483a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
484a30f8f8cSSatish Balay   } else {
485a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
486f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
487a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
488a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
489a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
490a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4917adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
492a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
493a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4940b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4950b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4960b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4970b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
498899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
499899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
5000b8dc8d2SHong Zhang       MatScalar    *v;
5010b8dc8d2SHong Zhang 
502899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
503899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
504899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
5050b8dc8d2SHong Zhang       /* Amat */
5060b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5070b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5080b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5090b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5100b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5110b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5120b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5130b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5140b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5150b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5160b8dc8d2SHong Zhang               /* non-diagonal block */
5170b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5180b8dc8d2SHong Zhang             }
5190b8dc8d2SHong Zhang           }
5200b8dc8d2SHong Zhang         }
5210b8dc8d2SHong Zhang       }
5220b8dc8d2SHong Zhang       /* Bmat */
5230b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5240b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5250b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5260b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5270b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5280b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5290b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5300b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5310b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5320b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5330b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5340b8dc8d2SHong Zhang             }
5350b8dc8d2SHong Zhang           }
5360b8dc8d2SHong Zhang         }
5370b8dc8d2SHong Zhang       }
5387adad957SLisandro Dalcin       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
5390b8dc8d2SHong Zhang       *norm = 0.0;
540899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
5410b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5420b8dc8d2SHong Zhang       }
5430b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     } else {
54529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay   }
548a30f8f8cSSatish Balay   PetscFunctionReturn(0);
549a30f8f8cSSatish Balay }
550a30f8f8cSSatish Balay 
5514a2ae208SSatish Balay #undef __FUNCT__
5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
554a30f8f8cSSatish Balay {
555a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
556dfbe8321SBarry Smith   PetscErrorCode ierr;
5571302d50aSBarry Smith   PetscInt       nstash,reallocs;
558a30f8f8cSSatish Balay   InsertMode     addv;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   PetscFunctionBegin;
561a30f8f8cSSatish Balay   if (baij->donotstash) {
562a30f8f8cSSatish Balay     PetscFunctionReturn(0);
563a30f8f8cSSatish Balay   }
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
5667adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
569a30f8f8cSSatish Balay   }
570a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
571a30f8f8cSSatish Balay 
5721e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr);
5731e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5751e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
576a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5771e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
578a30f8f8cSSatish Balay   PetscFunctionReturn(0);
579a30f8f8cSSatish Balay }
580a30f8f8cSSatish Balay 
5814a2ae208SSatish Balay #undef __FUNCT__
5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
584a30f8f8cSSatish Balay {
585a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
586a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5876849ba73SBarry Smith   PetscErrorCode ierr;
58813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
589*e44c0bd4SBarry Smith   PetscInt       *row,*col;
590*e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
59113f74950SBarry Smith   PetscMPIInt    n;
592a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
593a30f8f8cSSatish Balay   MatScalar      *val;
594a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
595a30f8f8cSSatish Balay 
59691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay 
599a30f8f8cSSatish Balay   if (!baij->donotstash) {
600a30f8f8cSSatish Balay     while (1) {
601a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
602a30f8f8cSSatish Balay       if (!flg) break;
603a30f8f8cSSatish Balay 
604a30f8f8cSSatish Balay       for (i=0; i<n;) {
605a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
606a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
607a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
608a30f8f8cSSatish Balay         else       ncols = n-i;
609a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
610a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
611a30f8f8cSSatish Balay         i = j;
612a30f8f8cSSatish Balay       }
613a30f8f8cSSatish Balay     }
614a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
615a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
616a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
617a30f8f8cSSatish Balay        restore the original flags */
618a30f8f8cSSatish Balay     r1 = baij->roworiented;
619a30f8f8cSSatish Balay     r2 = a->roworiented;
62091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
621a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
622a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
62391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
624a30f8f8cSSatish Balay     while (1) {
625a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       if (!flg) break;
627a30f8f8cSSatish Balay 
628a30f8f8cSSatish Balay       for (i=0; i<n;) {
629a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
630a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
631a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
632a30f8f8cSSatish Balay         else       ncols = n-i;
633a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
634a30f8f8cSSatish Balay         i = j;
635a30f8f8cSSatish Balay       }
636a30f8f8cSSatish Balay     }
637a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
638a30f8f8cSSatish Balay     baij->roworiented = r1;
639a30f8f8cSSatish Balay     a->roworiented    = r2;
64091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
641a30f8f8cSSatish Balay   }
642a30f8f8cSSatish Balay 
643a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
644a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
645a30f8f8cSSatish Balay 
646a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
647a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
648a30f8f8cSSatish Balay   /*
649a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
650a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
651a30f8f8cSSatish Balay   */
652a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
6537adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
654a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
655c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
656a30f8f8cSSatish Balay     }
657a30f8f8cSSatish Balay   }
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
66040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
661a30f8f8cSSatish Balay   }
66291c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
663a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
664a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
665a30f8f8cSSatish Balay 
666a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
667a30f8f8cSSatish Balay   baij->rowvalues = 0;
6685222a1afSHong Zhang 
669a30f8f8cSSatish Balay   PetscFunctionReturn(0);
670a30f8f8cSSatish Balay }
671a30f8f8cSSatish Balay 
672799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
6734a2ae208SSatish Balay #undef __FUNCT__
6744a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6756849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
676a30f8f8cSSatish Balay {
677a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
678dfbe8321SBarry Smith   PetscErrorCode    ierr;
679899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6801302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
68132077d6dSBarry Smith   PetscTruth        iascii,isdraw;
682b0a32e0cSBarry Smith   PetscViewer       sviewer;
683f3ef73ceSBarry Smith   PetscViewerFormat format;
684a30f8f8cSSatish Balay 
685a30f8f8cSSatish Balay   PetscFunctionBegin;
68632077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
687fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68832077d6dSBarry Smith   if (iascii) {
689b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
690456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
691a30f8f8cSSatish Balay       MatInfo info;
6927adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
693a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
69477431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
695899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
696899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
697a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
699a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
70077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
701b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
70207d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
703a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
704a30f8f8cSSatish Balay       PetscFunctionReturn(0);
705fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
70677431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
707a30f8f8cSSatish Balay       PetscFunctionReturn(0);
708c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
709c1490034SHong Zhang       PetscFunctionReturn(0);
710a30f8f8cSSatish Balay     }
711a30f8f8cSSatish Balay   }
712a30f8f8cSSatish Balay 
713a30f8f8cSSatish Balay   if (isdraw) {
714b0a32e0cSBarry Smith     PetscDraw  draw;
715a30f8f8cSSatish Balay     PetscTruth isnull;
716b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
717b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
718a30f8f8cSSatish Balay   }
719a30f8f8cSSatish Balay 
720a30f8f8cSSatish Balay   if (size == 1) {
7217adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
722a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
723a30f8f8cSSatish Balay   } else {
724a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
725a30f8f8cSSatish Balay     Mat          A;
72665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
72765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
728899cda47SBarry Smith     PetscInt     M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
729a30f8f8cSSatish Balay     MatScalar    *a;
730a30f8f8cSSatish Balay 
731f204ca49SKris Buschelman     /* Should this be the same type as mat? */
7327adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
733a30f8f8cSSatish Balay     if (!rank) {
734f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
735a30f8f8cSSatish Balay     } else {
736f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
737a30f8f8cSSatish Balay     }
738f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
739899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
74052e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
741a30f8f8cSSatish Balay 
742a30f8f8cSSatish Balay     /* copy over the A part */
74365d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
744a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7451302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
748e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
749a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
750a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
751e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
752a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
753a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
754a30f8f8cSSatish Balay           col++; a += bs;
755a30f8f8cSSatish Balay         }
756a30f8f8cSSatish Balay       }
757a30f8f8cSSatish Balay     }
758a30f8f8cSSatish Balay     /* copy over the B part */
75965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
76065d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
761a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
762e9f7bc9eSHong Zhang 
763e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
764a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
765a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
766a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
767a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
768799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
769a30f8f8cSSatish Balay           col++; a += bs;
770a30f8f8cSSatish Balay         }
771a30f8f8cSSatish Balay       }
772a30f8f8cSSatish Balay     }
773a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
774a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
775a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
776a30f8f8cSSatish Balay     /*
777a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
778b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
779a30f8f8cSSatish Balay     */
780b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
78165d70643SHong Zhang     if (!rank) {
7827adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
783a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
784a30f8f8cSSatish Balay     }
785b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
786a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
787a30f8f8cSSatish Balay   }
788a30f8f8cSSatish Balay   PetscFunctionReturn(0);
789a30f8f8cSSatish Balay }
790a30f8f8cSSatish Balay 
7914a2ae208SSatish Balay #undef __FUNCT__
7924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
793dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
794a30f8f8cSSatish Balay {
795dfbe8321SBarry Smith   PetscErrorCode ierr;
79632077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
797a30f8f8cSSatish Balay 
798a30f8f8cSSatish Balay   PetscFunctionBegin;
79932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
800fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
801b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
802fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
80332077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
804a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
805a30f8f8cSSatish Balay   } else {
8061302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
807a30f8f8cSSatish Balay   }
808a30f8f8cSSatish Balay   PetscFunctionReturn(0);
809a30f8f8cSSatish Balay }
810a30f8f8cSSatish Balay 
8114a2ae208SSatish Balay #undef __FUNCT__
8124a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
813dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
814a30f8f8cSSatish Balay {
815a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
816dfbe8321SBarry Smith   PetscErrorCode ierr;
817a30f8f8cSSatish Balay 
818a30f8f8cSSatish Balay   PetscFunctionBegin;
819a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
820899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
821a30f8f8cSSatish Balay #endif
822a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
823a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
824a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
825a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
826a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
8279c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
828a30f8f8cSSatish Balay #else
82905b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
830a30f8f8cSSatish Balay #endif
83105b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
832a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
833a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
83440781036SHong Zhang   if (baij->slvec0) {
83540781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
83640781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
83740781036SHong Zhang   }
83840781036SHong Zhang   if (baij->slvec1) {
83940781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
84040781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
84140781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
84240781036SHong Zhang   }
84340781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
84405b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
84505b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
84605b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
847a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
84805b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
849a30f8f8cSSatish Balay #endif
85059ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
85159ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
852899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
853a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
854901853e0SKris Buschelman 
855dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
856901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
857901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
858901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
859901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
860a30f8f8cSSatish Balay   PetscFunctionReturn(0);
861a30f8f8cSSatish Balay }
862a30f8f8cSSatish Balay 
8634a2ae208SSatish Balay #undef __FUNCT__
864a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
865dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
866a9d4b620SHong Zhang {
867a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
868dfbe8321SBarry Smith   PetscErrorCode ierr;
869899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
870a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
871a9d4b620SHong Zhang 
872a9d4b620SHong Zhang   PetscFunctionBegin;
873a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
874899cda47SBarry Smith   if (nt != A->cmap.n) {
875a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
876a9d4b620SHong Zhang   }
877a9d4b620SHong Zhang 
878a9d4b620SHong Zhang   /* diagonal part */
879a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8802dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
881a9d4b620SHong Zhang 
882a9d4b620SHong Zhang   /* subdiagonal part */
883a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
884fc165ae2SBarry Smith 
885a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8861ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8871ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
888a9d4b620SHong Zhang 
889fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
890fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8911ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
892fc165ae2SBarry Smith 
893fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
894ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
895a9d4b620SHong Zhang   /* supperdiagonal part */
896a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
897a9d4b620SHong Zhang   PetscFunctionReturn(0);
898a9d4b620SHong Zhang }
899a9d4b620SHong Zhang 
900a9d4b620SHong Zhang #undef __FUNCT__
90140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
902dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
903a30f8f8cSSatish Balay {
904a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
905dfbe8321SBarry Smith   PetscErrorCode ierr;
9061302d50aSBarry Smith   PetscInt       nt;
907a30f8f8cSSatish Balay 
908a30f8f8cSSatish Balay   PetscFunctionBegin;
909a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
910899cda47SBarry Smith   if (nt != A->cmap.n) {
91129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
912a30f8f8cSSatish Balay   }
913a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
914899cda47SBarry Smith   if (nt != A->rmap.N) {
91529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
916a30f8f8cSSatish Balay   }
91765d70643SHong Zhang 
918ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
919b941877fSHong Zhang   /* do diagonal part */
920b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
921b941877fSHong Zhang   /* do supperdiagonal part */
922ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
923b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
924b941877fSHong Zhang   /* do subdiagonal part */
925b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
926ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
927ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
92865d70643SHong Zhang 
929a30f8f8cSSatish Balay   PetscFunctionReturn(0);
930a30f8f8cSSatish Balay }
931a30f8f8cSSatish Balay 
9324a2ae208SSatish Balay #undef __FUNCT__
9334a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
934dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
935a30f8f8cSSatish Balay {
936de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
937dfbe8321SBarry Smith   PetscErrorCode ierr;
938899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
939a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
940a9d4b620SHong Zhang 
941a9d4b620SHong Zhang   PetscFunctionBegin;
942a9d4b620SHong Zhang   /*
9437adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9447adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
945a9d4b620SHong Zhang   */
946a9d4b620SHong Zhang   /* diagonal part */
947a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9482dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
949a9d4b620SHong Zhang 
950a9d4b620SHong Zhang   /* subdiagonal part */
951a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
952a9d4b620SHong Zhang 
953a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9541ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9551ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
956a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9571ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
958a9d4b620SHong Zhang 
959ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9601ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
961ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
962a9d4b620SHong Zhang 
963a9d4b620SHong Zhang   /* supperdiagonal part */
964a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
965a9d4b620SHong Zhang 
966a9d4b620SHong Zhang   PetscFunctionReturn(0);
967a9d4b620SHong Zhang }
968a9d4b620SHong Zhang 
969a9d4b620SHong Zhang #undef __FUNCT__
970a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
971dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
972a9d4b620SHong Zhang {
973a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
974dfbe8321SBarry Smith   PetscErrorCode ierr;
975a30f8f8cSSatish Balay 
976a30f8f8cSSatish Balay   PetscFunctionBegin;
977ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
978b941877fSHong Zhang   /* do diagonal part */
979b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
980b941877fSHong Zhang   /* do supperdiagonal part */
981ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
982de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
983de8b6608SHong Zhang 
984b941877fSHong Zhang   /* do subdiagonal part */
985a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
986ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
987ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
988aa482183SHong Zhang 
989a30f8f8cSSatish Balay   PetscFunctionReturn(0);
990a30f8f8cSSatish Balay }
991a30f8f8cSSatish Balay 
992a30f8f8cSSatish Balay /*
993a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
994a30f8f8cSSatish Balay    diagonal block
995a30f8f8cSSatish Balay */
9964a2ae208SSatish Balay #undef __FUNCT__
9974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
998dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
999a30f8f8cSSatish Balay {
1000a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1001dfbe8321SBarry Smith   PetscErrorCode ierr;
1002a30f8f8cSSatish Balay 
1003a30f8f8cSSatish Balay   PetscFunctionBegin;
1004899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1005a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1006a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1007a30f8f8cSSatish Balay }
1008a30f8f8cSSatish Balay 
10094a2ae208SSatish Balay #undef __FUNCT__
10104a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1011f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1012a30f8f8cSSatish Balay {
1013a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1014dfbe8321SBarry Smith   PetscErrorCode ierr;
1015a30f8f8cSSatish Balay 
1016a30f8f8cSSatish Balay   PetscFunctionBegin;
1017f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1018f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1019a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1020a30f8f8cSSatish Balay }
1021a30f8f8cSSatish Balay 
10224a2ae208SSatish Balay #undef __FUNCT__
10234a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10241302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1025a30f8f8cSSatish Balay {
1026d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1027d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1028d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1029899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1030899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1031899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1032d0d4cfc2SHong Zhang 
1033a30f8f8cSSatish Balay   PetscFunctionBegin;
1034d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1035d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1036d0d4cfc2SHong Zhang 
1037d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1038d0d4cfc2SHong Zhang     /*
1039d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1040d0d4cfc2SHong Zhang     */
1041d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1042d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1043d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1044d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1045d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1046d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1047d0d4cfc2SHong Zhang     }
1048d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1049d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1050d0d4cfc2SHong Zhang   }
1051d0d4cfc2SHong Zhang 
1052d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1053d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1054d0d4cfc2SHong Zhang 
1055d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1056d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1057d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1058d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1059d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1060d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1061d0d4cfc2SHong Zhang 
1062d0d4cfc2SHong Zhang   cmap  = mat->garray;
1063d0d4cfc2SHong Zhang   if (v  || idx) {
1064d0d4cfc2SHong Zhang     if (nztot) {
1065d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1066d0d4cfc2SHong Zhang       PetscInt imark = -1;
1067d0d4cfc2SHong Zhang       if (v) {
1068d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1069d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1070d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1071d0d4cfc2SHong Zhang           else break;
1072d0d4cfc2SHong Zhang         }
1073d0d4cfc2SHong Zhang         imark = i;
1074d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1075d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1076d0d4cfc2SHong Zhang       }
1077d0d4cfc2SHong Zhang       if (idx) {
1078d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1079d0d4cfc2SHong Zhang         if (imark > -1) {
1080d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1081d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1082d0d4cfc2SHong Zhang           }
1083d0d4cfc2SHong Zhang         } else {
1084d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1085d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1086d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1087d0d4cfc2SHong Zhang             else break;
1088d0d4cfc2SHong Zhang           }
1089d0d4cfc2SHong Zhang           imark = i;
1090d0d4cfc2SHong Zhang         }
1091d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1092d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1093d0d4cfc2SHong Zhang       }
1094d0d4cfc2SHong Zhang     } else {
1095d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1096d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1097d0d4cfc2SHong Zhang     }
1098d0d4cfc2SHong Zhang   }
1099d0d4cfc2SHong Zhang   *nz = nztot;
1100d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1101d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1102a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1103a30f8f8cSSatish Balay }
1104a30f8f8cSSatish Balay 
11054a2ae208SSatish Balay #undef __FUNCT__
11064a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11071302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1108a30f8f8cSSatish Balay {
1109a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1110a30f8f8cSSatish Balay 
1111a30f8f8cSSatish Balay   PetscFunctionBegin;
1112abc0a331SBarry Smith   if (!baij->getrowactive) {
1113abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1114a30f8f8cSSatish Balay   }
1115a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1116a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1117a30f8f8cSSatish Balay }
1118a30f8f8cSSatish Balay 
11194a2ae208SSatish Balay #undef __FUNCT__
1120d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1121d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1122d0d4cfc2SHong Zhang {
1123d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1124d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1125d0d4cfc2SHong Zhang 
1126d0d4cfc2SHong Zhang   PetscFunctionBegin;
1127d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1128d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1129d0d4cfc2SHong Zhang }
1130d0d4cfc2SHong Zhang #undef __FUNCT__
1131d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1132d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1133d0d4cfc2SHong Zhang {
1134d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1135d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1136d0d4cfc2SHong Zhang 
1137d0d4cfc2SHong Zhang   PetscFunctionBegin;
1138d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1139d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1140d0d4cfc2SHong Zhang }
1141d0d4cfc2SHong Zhang 
1142d0d4cfc2SHong Zhang #undef __FUNCT__
114399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
114499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
114599cafbc1SBarry Smith {
114699cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
114799cafbc1SBarry Smith   PetscErrorCode ierr;
114899cafbc1SBarry Smith 
114999cafbc1SBarry Smith   PetscFunctionBegin;
115099cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
115199cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
115299cafbc1SBarry Smith   PetscFunctionReturn(0);
115399cafbc1SBarry Smith }
115499cafbc1SBarry Smith 
115599cafbc1SBarry Smith #undef __FUNCT__
115699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
115799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
115899cafbc1SBarry Smith {
115999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
116099cafbc1SBarry Smith   PetscErrorCode ierr;
116199cafbc1SBarry Smith 
116299cafbc1SBarry Smith   PetscFunctionBegin;
116399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
116499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
116599cafbc1SBarry Smith   PetscFunctionReturn(0);
116699cafbc1SBarry Smith }
116799cafbc1SBarry Smith 
116899cafbc1SBarry Smith #undef __FUNCT__
11694a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1170dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1171a30f8f8cSSatish Balay {
1172a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1173dfbe8321SBarry Smith   PetscErrorCode ierr;
1174a30f8f8cSSatish Balay 
1175a30f8f8cSSatish Balay   PetscFunctionBegin;
1176a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1178a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1179a30f8f8cSSatish Balay }
1180a30f8f8cSSatish Balay 
11814a2ae208SSatish Balay #undef __FUNCT__
11824a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1183dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1184a30f8f8cSSatish Balay {
1185a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1186a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1187dfbe8321SBarry Smith   PetscErrorCode ierr;
1188a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1189a30f8f8cSSatish Balay 
1190a30f8f8cSSatish Balay   PetscFunctionBegin;
1191899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1192a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1193a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1194a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1195a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1196a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1197a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1198a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1199a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1200a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1201a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1202a30f8f8cSSatish Balay     info->memory       = isend[3];
1203a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1204a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
12057adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1206a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1207a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1208a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1209a30f8f8cSSatish Balay     info->memory       = irecv[3];
1210a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1211a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
12127adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1213a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1214a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1215a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1216a30f8f8cSSatish Balay     info->memory       = irecv[3];
1217a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1218a30f8f8cSSatish Balay   } else {
121977431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1220a30f8f8cSSatish Balay   }
1221899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1222899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1223899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1224899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1225a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1226a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1227a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1228a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1229a30f8f8cSSatish Balay }
1230a30f8f8cSSatish Balay 
12314a2ae208SSatish Balay #undef __FUNCT__
12324a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
12334e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1234a30f8f8cSSatish Balay {
1235a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1236d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1237dfbe8321SBarry Smith   PetscErrorCode ierr;
1238a30f8f8cSSatish Balay 
1239a30f8f8cSSatish Balay   PetscFunctionBegin;
1240e98b92d7SKris Buschelman   switch (op) {
1241512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1242e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1243e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1244e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12454e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12464e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1247e98b92d7SKris Buschelman     break;
1248e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12494e0d8c25SBarry Smith     a->roworiented = flg;
12504e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12514e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1252e98b92d7SKris Buschelman     break;
12534e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1254290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1255e98b92d7SKris Buschelman     break;
1256e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12574e0d8c25SBarry Smith     a->donotstash = flg;
1258e98b92d7SKris Buschelman     break;
1259e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12604e0d8c25SBarry Smith     a->ht_flag = flg;
1261e98b92d7SKris Buschelman     break;
12629a4540c5SBarry Smith   case MAT_HERMITIAN:
12634e0d8c25SBarry Smith     if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
126477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
126577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12669a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12674e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1268290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
126977e54ba9SKris Buschelman     break;
1270d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12714e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1272d0d4cfc2SHong Zhang     break;
1273d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12744e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1275d0d4cfc2SHong Zhang     break;
1276d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12774e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1278d0d4cfc2SHong Zhang     break;
1279e98b92d7SKris Buschelman   default:
1280ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1281a30f8f8cSSatish Balay   }
1282a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1283a30f8f8cSSatish Balay }
1284a30f8f8cSSatish Balay 
12854a2ae208SSatish Balay #undef __FUNCT__
12868115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1287dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1288a30f8f8cSSatish Balay {
1289dfbe8321SBarry Smith   PetscErrorCode ierr;
1290a30f8f8cSSatish Balay   PetscFunctionBegin;
1291999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
12928115998fSBarry Smith   PetscFunctionReturn(0);
1293a30f8f8cSSatish Balay }
1294a30f8f8cSSatish Balay 
12954a2ae208SSatish Balay #undef __FUNCT__
12964a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1297dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1298a30f8f8cSSatish Balay {
1299a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1300a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1301dfbe8321SBarry Smith   PetscErrorCode ierr;
13025e90f9d9SHong Zhang   PetscInt       nv,m,n;
1303b3bf805bSHong Zhang   PetscTruth     flg;
1304a30f8f8cSSatish Balay 
1305a30f8f8cSSatish Balay   PetscFunctionBegin;
1306a30f8f8cSSatish Balay   if (ll != rr){
1307b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1308b3bf805bSHong Zhang     if (!flg)
130929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1310a30f8f8cSSatish Balay   }
1311b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1312b3bf805bSHong Zhang 
13135e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
13145e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1315b3bf805bSHong Zhang 
13165e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
13175e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13185e90f9d9SHong Zhang 
1319ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13205e90f9d9SHong Zhang 
13215e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1322a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13235e90f9d9SHong Zhang 
13245e90f9d9SHong Zhang   /* scale the diagonal part */
1325a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1326a30f8f8cSSatish Balay 
13275e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1328ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1329a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1330a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1331a30f8f8cSSatish Balay }
1332a30f8f8cSSatish Balay 
13334a2ae208SSatish Balay #undef __FUNCT__
13344a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1335dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1336a30f8f8cSSatish Balay {
1337f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1338dfbe8321SBarry Smith   PetscErrorCode ierr;
1339a30f8f8cSSatish Balay 
1340a30f8f8cSSatish Balay   PetscFunctionBegin;
1341a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1342a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1343a30f8f8cSSatish Balay }
1344a30f8f8cSSatish Balay 
13456849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1346a30f8f8cSSatish Balay 
13474a2ae208SSatish Balay #undef __FUNCT__
13484a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1349dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1350a30f8f8cSSatish Balay {
1351a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1352a30f8f8cSSatish Balay   Mat            a,b,c,d;
1353a30f8f8cSSatish Balay   PetscTruth     flg;
1354dfbe8321SBarry Smith   PetscErrorCode ierr;
1355a30f8f8cSSatish Balay 
1356a30f8f8cSSatish Balay   PetscFunctionBegin;
1357a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1358a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1359a30f8f8cSSatish Balay 
1360a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1361abc0a331SBarry Smith   if (flg) {
1362a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1363a30f8f8cSSatish Balay   }
13647adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1365a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1366a30f8f8cSSatish Balay }
1367a30f8f8cSSatish Balay 
13684a2ae208SSatish Balay #undef __FUNCT__
13693c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13703c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13713c896bc6SHong Zhang {
13723c896bc6SHong Zhang   PetscErrorCode ierr;
13733c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13743c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13753c896bc6SHong Zhang 
13763c896bc6SHong Zhang   PetscFunctionBegin;
13773c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13783c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1379d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13803c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1381d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13823c896bc6SHong Zhang   } else {
13833c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13843c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13853c896bc6SHong Zhang   }
13863c896bc6SHong Zhang   PetscFunctionReturn(0);
13873c896bc6SHong Zhang }
13883c896bc6SHong Zhang 
13893c896bc6SHong Zhang #undef __FUNCT__
13904a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1391dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1392273d9f13SBarry Smith {
1393dfbe8321SBarry Smith   PetscErrorCode ierr;
1394273d9f13SBarry Smith 
1395273d9f13SBarry Smith   PetscFunctionBegin;
13967edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1397273d9f13SBarry Smith   PetscFunctionReturn(0);
1398273d9f13SBarry Smith }
1399a5e6ed63SBarry Smith 
14004fe895cdSHong Zhang #include "petscblaslapack.h"
14014fe895cdSHong Zhang #undef __FUNCT__
14024fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14034fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14044fe895cdSHong Zhang {
14054fe895cdSHong Zhang   PetscErrorCode ierr;
14064fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
14074fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14084fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14094fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14104fe895cdSHong Zhang 
14114fe895cdSHong Zhang   PetscFunctionBegin;
14124fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14134fe895cdSHong Zhang     PetscScalar alpha = a;
14144fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
14154fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
14160805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
14174fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
14184fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
14194fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
14200805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
14214fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
14224fe895cdSHong Zhang   } else {
1423d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14244fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1425d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14264fe895cdSHong Zhang   }
14274fe895cdSHong Zhang   PetscFunctionReturn(0);
14284fe895cdSHong Zhang }
14294fe895cdSHong Zhang 
1430a5e6ed63SBarry Smith #undef __FUNCT__
1431a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14321302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1433a5e6ed63SBarry Smith {
14346849ba73SBarry Smith   PetscErrorCode ierr;
14351302d50aSBarry Smith   PetscInt       i;
1436a5e6ed63SBarry Smith   PetscTruth     flg;
1437a5e6ed63SBarry Smith 
14386849ba73SBarry Smith   PetscFunctionBegin;
1439a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1440a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1441a5e6ed63SBarry Smith     if (!flg) {
14421302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1443a5e6ed63SBarry Smith     }
1444a5e6ed63SBarry Smith   }
1445a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1446a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1447a5e6ed63SBarry Smith }
1448a5e6ed63SBarry Smith 
1449a5e6ed63SBarry Smith 
1450a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1451a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1452a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1453a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1454a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1455a9d4b620SHong Zhang        MatMult_MPISBAIJ,
145697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1457431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1458431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1459a30f8f8cSSatish Balay        0,
1460a30f8f8cSSatish Balay        0,
1461a30f8f8cSSatish Balay        0,
146297304618SKris Buschelman /*10*/ 0,
1463a30f8f8cSSatish Balay        0,
1464a30f8f8cSSatish Balay        0,
14652798e883SHong Zhang        MatRelax_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
146797304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1468a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1469a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1470a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1471a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
147297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1473a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1476a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1477dcf5cc72SBarry Smith /*25*/ 0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        0,
148297304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1483b5df2d14SHong Zhang        0,
1484a30f8f8cSSatish Balay        0,
1485a30f8f8cSSatish Balay        0,
1486a30f8f8cSSatish Balay        0,
148797304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1488a30f8f8cSSatish Balay        0,
1489a30f8f8cSSatish Balay        0,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        0,
14924fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1493a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1494d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1495a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14963c896bc6SHong Zhang        MatCopy_MPISBAIJ,
14978c07d4e3SBarry Smith /*45*/ 0,
1498a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1499a30f8f8cSSatish Balay        0,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        0,
1502521d7252SBarry Smith /*50*/ 0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        0,
1506a30f8f8cSSatish Balay        0,
150797304618SKris Buschelman /*55*/ 0,
1508a30f8f8cSSatish Balay        0,
1509a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1510a30f8f8cSSatish Balay        0,
1511a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
151297304618SKris Buschelman /*60*/ 0,
1513a30f8f8cSSatish Balay        0,
1514a30f8f8cSSatish Balay        0,
1515357abbc8SBarry Smith        0,
151624d5174aSHong Zhang        0,
151797304618SKris Buschelman /*65*/ 0,
151824d5174aSHong Zhang        0,
151924d5174aSHong Zhang        0,
152024d5174aSHong Zhang        0,
152124d5174aSHong Zhang        0,
1522985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ,
152324d5174aSHong Zhang        0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
152697304618SKris Buschelman        0,
152797304618SKris Buschelman /*75*/ 0,
152897304618SKris Buschelman        0,
152997304618SKris Buschelman        0,
153097304618SKris Buschelman        0,
153197304618SKris Buschelman        0,
153297304618SKris Buschelman /*80*/ 0,
153397304618SKris Buschelman        0,
153497304618SKris Buschelman        0,
153597304618SKris Buschelman        0,
1536865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1537865e5f61SKris Buschelman /*85*/ 0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
1540865e5f61SKris Buschelman        0,
1541865e5f61SKris Buschelman        0,
1542865e5f61SKris Buschelman /*90*/ 0,
1543865e5f61SKris Buschelman        0,
1544865e5f61SKris Buschelman        0,
1545865e5f61SKris Buschelman        0,
1546865e5f61SKris Buschelman        0,
1547865e5f61SKris Buschelman /*95*/ 0,
1548865e5f61SKris Buschelman        0,
1549865e5f61SKris Buschelman        0,
155099cafbc1SBarry Smith        0,
155199cafbc1SBarry Smith        0,
155299cafbc1SBarry Smith /*100*/0,
155399cafbc1SBarry Smith        0,
155499cafbc1SBarry Smith        0,
155599cafbc1SBarry Smith        0,
155699cafbc1SBarry Smith        0,
155799cafbc1SBarry Smith /*105*/0,
155899cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1559d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1560d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1561d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
156299cafbc1SBarry Smith };
1563a30f8f8cSSatish Balay 
1564a30f8f8cSSatish Balay 
1565a30f8f8cSSatish Balay EXTERN_C_BEGIN
15664a2ae208SSatish Balay #undef __FUNCT__
15674a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1568be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1569a30f8f8cSSatish Balay {
1570a30f8f8cSSatish Balay   PetscFunctionBegin;
1571a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1572a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1573a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1574a30f8f8cSSatish Balay }
1575a30f8f8cSSatish Balay EXTERN_C_END
1576a30f8f8cSSatish Balay 
1577273d9f13SBarry Smith EXTERN_C_BEGIN
15784a2ae208SSatish Balay #undef __FUNCT__
1579a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1580be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1581a23d5eceSKris Buschelman {
1582a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1583dfbe8321SBarry Smith   PetscErrorCode ierr;
15841302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1585a23d5eceSKris Buschelman 
1586a23d5eceSKris Buschelman   PetscFunctionBegin;
15877adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
15888c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
15898c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1590a23d5eceSKris Buschelman 
1591a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1592a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1593a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
159477431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
159577431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1596899cda47SBarry Smith 
1597899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
15986148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
15996148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
1600899cda47SBarry Smith 
1601a23d5eceSKris Buschelman   if (d_nnz) {
1602899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
160377431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1604a23d5eceSKris Buschelman     }
1605a23d5eceSKris Buschelman   }
1606a23d5eceSKris Buschelman   if (o_nnz) {
1607899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
160877431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1609a23d5eceSKris Buschelman     }
1610a23d5eceSKris Buschelman   }
1611a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1612a23d5eceSKris Buschelman 
1613a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1614899cda47SBarry Smith   mbs = B->rmap.n/bs;
1615899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1616899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1617899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1618a23d5eceSKris Buschelman   }
1619a23d5eceSKris Buschelman 
1620899cda47SBarry Smith   B->rmap.bs  = bs;
1621a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1622a23d5eceSKris Buschelman   b->mbs = mbs;
1623a23d5eceSKris Buschelman   b->nbs = mbs;
1624a23d5eceSKris Buschelman   b->Mbs = Mbs;
1625a23d5eceSKris Buschelman   b->Nbs = Mbs;
1626a23d5eceSKris Buschelman 
1627a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1628899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1629a23d5eceSKris Buschelman   }
1630899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1631899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1632a23d5eceSKris Buschelman 
1633899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1634899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1635a23d5eceSKris Buschelman 
1636f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1637899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
16389c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1639c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
164052e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
16419c097c71SKris Buschelman 
1642f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1643899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
16444aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1645589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
164652e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1647a23d5eceSKris Buschelman 
1648a23d5eceSKris Buschelman   /* build cache for off array entries formed */
16497adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1650a23d5eceSKris Buschelman 
1651a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1652a23d5eceSKris Buschelman }
1653a23d5eceSKris Buschelman EXTERN_C_END
1654a23d5eceSKris Buschelman 
16550bad9183SKris Buschelman /*MC
1656fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16570bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16580bad9183SKris Buschelman 
16590bad9183SKris Buschelman    Options Database Keys:
16600bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16610bad9183SKris Buschelman 
16620bad9183SKris Buschelman   Level: beginner
16630bad9183SKris Buschelman 
16640bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16650bad9183SKris Buschelman M*/
16660bad9183SKris Buschelman 
1667a23d5eceSKris Buschelman EXTERN_C_BEGIN
1668a23d5eceSKris Buschelman #undef __FUNCT__
16694a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1670be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1671b5df2d14SHong Zhang {
1672b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1673dfbe8321SBarry Smith   PetscErrorCode ierr;
1674b5df2d14SHong Zhang   PetscTruth     flg;
1675b5df2d14SHong Zhang 
1676b5df2d14SHong Zhang   PetscFunctionBegin;
1677b5df2d14SHong Zhang 
167838f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1679b0a32e0cSBarry Smith   B->data = (void*)b;
1680b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1681b5df2d14SHong Zhang 
1682b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1683b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1684b5df2d14SHong Zhang   B->mapping    = 0;
1685b5df2d14SHong Zhang   B->factor     = 0;
1686b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1687b5df2d14SHong Zhang 
1688b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16897adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16907adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1691b5df2d14SHong Zhang 
1692b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1693899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1694b5df2d14SHong Zhang 
1695b5df2d14SHong Zhang   /* build cache for off array entries formed */
16967adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1697b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1698b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1699b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1700b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1701b5df2d14SHong Zhang 
1702f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1703b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
170464a35ccbSBarry Smith   b->setvalueslen     = 0;
1705b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1706b5df2d14SHong Zhang #endif
1707b5df2d14SHong Zhang 
1708b5df2d14SHong Zhang   /* stuff used in block assembly */
1709b5df2d14SHong Zhang   b->barray       = 0;
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1712b5df2d14SHong Zhang   b->lvec         = 0;
1713b5df2d14SHong Zhang   b->Mvctx        = 0;
171440781036SHong Zhang   b->slvec0       = 0;
171540781036SHong Zhang   b->slvec0b      = 0;
171640781036SHong Zhang   b->slvec1       = 0;
171740781036SHong Zhang   b->slvec1a      = 0;
171840781036SHong Zhang   b->slvec1b      = 0;
171940781036SHong Zhang   b->sMvctx       = 0;
1720b5df2d14SHong Zhang 
1721b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1722b5df2d14SHong Zhang   b->rowindices   = 0;
1723b5df2d14SHong Zhang   b->rowvalues    = 0;
1724b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1725b5df2d14SHong Zhang 
1726b5df2d14SHong Zhang   /* hash table stuff */
1727b5df2d14SHong Zhang   b->ht           = 0;
1728b5df2d14SHong Zhang   b->hd           = 0;
1729b5df2d14SHong Zhang   b->ht_size      = 0;
1730b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1731b5df2d14SHong Zhang   b->ht_fact      = 0;
1732b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1733b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1734b5df2d14SHong Zhang 
173559ffdab8SBarry Smith   b->in_loc       = 0;
173659ffdab8SBarry Smith   b->v_loc        = 0;
173759ffdab8SBarry Smith   b->n_loc        = 0;
17387adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17398c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1740b5df2d14SHong Zhang     if (flg) {
1741f6275e2eSBarry Smith       PetscReal fact = 1.39;
17424e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17438c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1744b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1745b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17461e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1747b5df2d14SHong Zhang     }
17488c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17498c07d4e3SBarry Smith 
1750b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1751b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1752b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1753b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1754b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1755b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1756b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1757b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1758b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1759a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1760a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1761a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
176223ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
176323ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
176423ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
176523ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
176617667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1767b5df2d14SHong Zhang   PetscFunctionReturn(0);
1768b5df2d14SHong Zhang }
1769273d9f13SBarry Smith EXTERN_C_END
1770b5df2d14SHong Zhang 
1771209238afSKris Buschelman /*MC
1772002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1773209238afSKris Buschelman 
1774209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1775209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1776209238afSKris Buschelman 
1777209238afSKris Buschelman    Options Database Keys:
1778209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1779209238afSKris Buschelman 
1780209238afSKris Buschelman   Level: beginner
1781209238afSKris Buschelman 
1782209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1783209238afSKris Buschelman M*/
1784209238afSKris Buschelman 
1785209238afSKris Buschelman EXTERN_C_BEGIN
1786209238afSKris Buschelman #undef __FUNCT__
1787209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1788be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1789dfbe8321SBarry Smith {
17906849ba73SBarry Smith   PetscErrorCode ierr;
17911302d50aSBarry Smith   PetscMPIInt    size;
1792209238afSKris Buschelman 
1793209238afSKris Buschelman   PetscFunctionBegin;
17947adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1795209238afSKris Buschelman   if (size == 1) {
1796209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1797209238afSKris Buschelman   } else {
1798209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1799209238afSKris Buschelman   }
1800209238afSKris Buschelman   PetscFunctionReturn(0);
1801209238afSKris Buschelman }
1802209238afSKris Buschelman EXTERN_C_END
1803209238afSKris Buschelman 
18044a2ae208SSatish Balay #undef __FUNCT__
18054a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1806b5df2d14SHong Zhang /*@C
1807b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1808b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1809b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1810b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1811b5df2d14SHong Zhang 
1812b5df2d14SHong Zhang    Collective on Mat
1813b5df2d14SHong Zhang 
1814b5df2d14SHong Zhang    Input Parameters:
1815b5df2d14SHong Zhang +  A - the matrix
1816b5df2d14SHong Zhang .  bs   - size of blockk
1817b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1818b5df2d14SHong Zhang            submatrix  (same for all local rows)
1819b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18206d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18216d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18226d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1823b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1824b5df2d14SHong Zhang            submatrix (same for all local rows).
1825b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1826b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1827b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1828b5df2d14SHong Zhang 
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    Options Database Keys:
1831b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1832b5df2d14SHong Zhang                      block calculations (much slower)
1833b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1834b5df2d14SHong Zhang 
1835b5df2d14SHong Zhang    Notes:
1836b5df2d14SHong Zhang 
1837b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1838b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1839b5df2d14SHong Zhang 
184049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
184149a6f317SBarry Smith 
1842b5df2d14SHong Zhang    Storage Information:
1843b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1844b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1845b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1846b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1849b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1850b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1851b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1852b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1853b5df2d14SHong Zhang 
1854aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1855aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1856aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1857aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1858aa95bbe8SBarry Smith 
1859b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1860b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1861b5df2d14SHong Zhang 
1862b5df2d14SHong Zhang .vb
1863b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1864b5df2d14SHong Zhang           -------------------
1865b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1866b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1867b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1868b5df2d14SHong Zhang           -------------------
1869b5df2d14SHong Zhang .ve
1870b5df2d14SHong Zhang 
1871b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1872b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18736d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18746d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1875b5df2d14SHong Zhang 
18766d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18776d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1878b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1879b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1880b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1881b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1882b5df2d14SHong Zhang    matrices.
1883b5df2d14SHong Zhang 
1884b5df2d14SHong Zhang    Level: intermediate
1885b5df2d14SHong Zhang 
1886b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1889b5df2d14SHong Zhang @*/
1890be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1891b5df2d14SHong Zhang {
18921302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1893b5df2d14SHong Zhang 
1894b5df2d14SHong Zhang   PetscFunctionBegin;
1895a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1896a23d5eceSKris Buschelman   if (f) {
1897a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1898b5df2d14SHong Zhang   }
1899b5df2d14SHong Zhang   PetscFunctionReturn(0);
1900b5df2d14SHong Zhang }
1901b5df2d14SHong Zhang 
19024a2ae208SSatish Balay #undef __FUNCT__
19034a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1904a30f8f8cSSatish Balay /*@C
1905a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1906a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1907a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1908a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1909a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1910a30f8f8cSSatish Balay 
1911a30f8f8cSSatish Balay    Collective on MPI_Comm
1912a30f8f8cSSatish Balay 
1913a30f8f8cSSatish Balay    Input Parameters:
1914a30f8f8cSSatish Balay +  comm - MPI communicator
1915a30f8f8cSSatish Balay .  bs   - size of blockk
1916a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1917a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1918a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1919a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1920a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1921a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1922a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1923a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1924a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1925a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1926a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19276d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19286d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19296d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1930a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1931a30f8f8cSSatish Balay            submatrix (same for all local rows).
1932a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1933a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1934a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1935a30f8f8cSSatish Balay 
1936a30f8f8cSSatish Balay    Output Parameter:
1937a30f8f8cSSatish Balay .  A - the matrix
1938a30f8f8cSSatish Balay 
1939a30f8f8cSSatish Balay    Options Database Keys:
1940a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1941a30f8f8cSSatish Balay                      block calculations (much slower)
1942a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1943a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1944a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1945a30f8f8cSSatish Balay 
1946175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1947175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
1948175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
1949175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1950175b88e8SBarry Smith 
1951a30f8f8cSSatish Balay    Notes:
1952d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19536d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1954d1be2dadSMatthew Knepley 
1955a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1956a30f8f8cSSatish Balay    (possibly both).
1957a30f8f8cSSatish Balay 
1958a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1959a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1960a30f8f8cSSatish Balay 
196149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
196249a6f317SBarry Smith 
1963a30f8f8cSSatish Balay    Storage Information:
1964a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1965a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1966a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1967a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1968a30f8f8cSSatish Balay 
1969a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1970a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1971a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1972a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1973a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1974a30f8f8cSSatish Balay 
1975a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1976a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1977a30f8f8cSSatish Balay 
1978a30f8f8cSSatish Balay .vb
1979a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1980a30f8f8cSSatish Balay           -------------------
1981a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1982a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1983a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1984a30f8f8cSSatish Balay           -------------------
1985a30f8f8cSSatish Balay .ve
1986a30f8f8cSSatish Balay 
1987a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1988a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19896d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19906d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1991a30f8f8cSSatish Balay 
19926d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19936d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1994a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1995a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1996a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1997a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1998a30f8f8cSSatish Balay    matrices.
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay    Level: intermediate
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2003a30f8f8cSSatish Balay 
2004a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2005a30f8f8cSSatish Balay @*/
2006a30f8f8cSSatish Balay 
2007be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2008a30f8f8cSSatish Balay {
20096849ba73SBarry Smith   PetscErrorCode ierr;
20101302d50aSBarry Smith   PetscMPIInt    size;
2011a30f8f8cSSatish Balay 
2012a30f8f8cSSatish Balay   PetscFunctionBegin;
2013f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2014f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2015273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2016273d9f13SBarry Smith   if (size > 1) {
2017b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2018b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2019273d9f13SBarry Smith   } else {
2020273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2021273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2022273d9f13SBarry Smith   }
2023a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2024a30f8f8cSSatish Balay }
2025a30f8f8cSSatish Balay 
2026a30f8f8cSSatish Balay 
20274a2ae208SSatish Balay #undef __FUNCT__
20284a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20296849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2030a30f8f8cSSatish Balay {
2031a30f8f8cSSatish Balay   Mat            mat;
2032a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2033dfbe8321SBarry Smith   PetscErrorCode ierr;
2034899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
2035387bc808SHong Zhang   PetscScalar    *array;
2036a30f8f8cSSatish Balay 
2037a30f8f8cSSatish Balay   PetscFunctionBegin;
2038a30f8f8cSSatish Balay   *newmat       = 0;
20397adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2040899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
20417adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20421d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
20437adad957SLisandro Dalcin   ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
20447adad957SLisandro Dalcin   ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2045e1b6402fSHong Zhang 
204682327fa8SHong Zhang   mat->factor       = matin->factor;
2047273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
204882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20497fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20507fff6886SHong Zhang 
2051b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2052a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2053a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2054a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2055a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2056a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2057a30f8f8cSSatish Balay 
2058899cda47SBarry Smith 
2059a30f8f8cSSatish Balay   a->size         = oldmat->size;
2060a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2061a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2062a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2063a30f8f8cSSatish Balay   a->rowindices   = 0;
2064a30f8f8cSSatish Balay   a->rowvalues    = 0;
2065a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2066a30f8f8cSSatish Balay   a->barray       = 0;
2067899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2068899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2069899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2070899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2071a30f8f8cSSatish Balay 
2072a30f8f8cSSatish Balay   /* hash table stuff */
2073a30f8f8cSSatish Balay   a->ht           = 0;
2074a30f8f8cSSatish Balay   a->hd           = 0;
2075a30f8f8cSSatish Balay   a->ht_size      = 0;
2076a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2077a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2078a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2079a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2080a30f8f8cSSatish Balay 
2081899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
20827adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
20837adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2084a30f8f8cSSatish Balay   if (oldmat->colmap) {
2085a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2086a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2087a30f8f8cSSatish Balay #else
20881302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
208952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20901302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2091a30f8f8cSSatish Balay #endif
2092a30f8f8cSSatish Balay   } else a->colmap = 0;
2093387bc808SHong Zhang 
2094a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20951302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
209652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20971302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2098a30f8f8cSSatish Balay   } else a->garray = 0;
2099a30f8f8cSSatish Balay 
2100a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
210152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2102a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
210352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
210482327fa8SHong Zhang 
210582327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
210652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
210782327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
210852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2109387bc808SHong Zhang 
2110387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21111ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2112387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2113387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21141ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21151ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2116387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21171ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
211852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
211952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
212152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
212252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2123387bc808SHong Zhang 
2124387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2125387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2126387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
212752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
212882327fa8SHong Zhang 
2129a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
213052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2131a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
213252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21337adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2134a30f8f8cSSatish Balay   *newmat = mat;
2135a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2136a30f8f8cSSatish Balay }
2137a30f8f8cSSatish Balay 
2138a30f8f8cSSatish Balay #include "petscsys.h"
2139a30f8f8cSSatish Balay 
21404a2ae208SSatish Balay #undef __FUNCT__
21414a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2142f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2143a30f8f8cSSatish Balay {
2144a30f8f8cSSatish Balay   Mat            A;
21456849ba73SBarry Smith   PetscErrorCode ierr;
214613f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
214787828ca2SBarry Smith   PetscScalar    *vals,*buf;
2148a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2149a30f8f8cSSatish Balay   MPI_Status     status;
2150*e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
215113f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21522fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21531302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21541302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21551302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
215613f74950SBarry Smith   int            fd;
2157a30f8f8cSSatish Balay 
2158a30f8f8cSSatish Balay   PetscFunctionBegin;
215977925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21608c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21618c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2162a30f8f8cSSatish Balay 
2163a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2164a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2165a30f8f8cSSatish Balay   if (!rank) {
2166b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2167a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2168552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2169a30f8f8cSSatish Balay     if (header[3] < 0) {
217029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2171a30f8f8cSSatish Balay     }
2172a30f8f8cSSatish Balay   }
2173a30f8f8cSSatish Balay 
2174a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2175a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2176a30f8f8cSSatish Balay 
217729bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2178a30f8f8cSSatish Balay 
2179a30f8f8cSSatish Balay   /*
2180a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2181a30f8f8cSSatish Balay      divisible by the blocksize
2182a30f8f8cSSatish Balay   */
2183a30f8f8cSSatish Balay   Mbs        = M/bs;
2184a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2185a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2186a30f8f8cSSatish Balay   else                  Mbs++;
2187a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21881e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   }
2190a30f8f8cSSatish Balay 
2191a30f8f8cSSatish Balay   /* determine ownership of all rows */
2192a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2193a30f8f8cSSatish Balay   m          = mbs*bs;
2194a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2195a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2196*e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2197*e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2198a30f8f8cSSatish Balay   rowners[0] = 0;
2199a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2200a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2201a30f8f8cSSatish Balay   rstart = rowners[rank];
2202a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2203a30f8f8cSSatish Balay 
2204a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22052fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2206a30f8f8cSSatish Balay   if (!rank) {
22071302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2208a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2209a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2210a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2211a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2212a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2213a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2214a30f8f8cSSatish Balay   } else {
2215a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2216a30f8f8cSSatish Balay   }
2217a30f8f8cSSatish Balay 
22180222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2219a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22201302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22211302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2222a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2223a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2224a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2225a30f8f8cSSatish Balay       }
2226a30f8f8cSSatish Balay     }
2227a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay 
2229a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2230a30f8f8cSSatish Balay     maxnz = 0;
2231a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2232a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2233a30f8f8cSSatish Balay     }
22341302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2235a30f8f8cSSatish Balay 
2236a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2237a30f8f8cSSatish Balay     nz     = procsnz[0];
22381302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2239a30f8f8cSSatish Balay     mycols = ibuf;
2240a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2241a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2242a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2243a30f8f8cSSatish Balay 
2244a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2245a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2246a30f8f8cSSatish Balay       nz   = procsnz[i];
2247a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2248a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay     }
2250a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2251a30f8f8cSSatish Balay     if (size != 1) {
2252a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2253a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2254a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2255a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay     }
2257a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22580222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2259a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2260a30f8f8cSSatish Balay     nz = 0;
2261a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2262a30f8f8cSSatish Balay       nz += locrowlens[i];
2263a30f8f8cSSatish Balay     }
22641302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay     mycols = ibuf;
2266a30f8f8cSSatish Balay     /* receive message of column indices*/
2267a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2268a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
226929bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2270a30f8f8cSSatish Balay   }
2271a30f8f8cSSatish Balay 
2272a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22731302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2274a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22751302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22761302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2277a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2278a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2279a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2280a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2281a30f8f8cSSatish Balay     dcount  = 0;
2282a30f8f8cSSatish Balay     odcount = 0;
2283a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2284a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2285a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22860222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2287a30f8f8cSSatish Balay         if (!mask[tmp]) {
2288a30f8f8cSSatish Balay           mask[tmp] = 1;
22890222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22900222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2291a30f8f8cSSatish Balay         }
2292a30f8f8cSSatish Balay       }
2293a30f8f8cSSatish Balay       rowcount++;
2294a30f8f8cSSatish Balay     }
2295a30f8f8cSSatish Balay 
22960222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22970222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2298a30f8f8cSSatish Balay 
2299a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2300a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2301a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2302a30f8f8cSSatish Balay   }
2303a30f8f8cSSatish Balay 
2304a30f8f8cSSatish Balay   /* create our matrix */
2305f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2306f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
230722191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
230822191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2309a30f8f8cSSatish Balay 
2310a30f8f8cSSatish Balay   if (!rank) {
231187828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2312a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2313a30f8f8cSSatish Balay     nz = procsnz[0];
2314a30f8f8cSSatish Balay     vals = buf;
2315a30f8f8cSSatish Balay     mycols = ibuf;
2316a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2317a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2318a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay     /* insert into matrix */
2321a30f8f8cSSatish Balay     jj      = rstart*bs;
2322a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23237e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2324a30f8f8cSSatish Balay       mycols += locrowlens[i];
2325a30f8f8cSSatish Balay       vals   += locrowlens[i];
2326a30f8f8cSSatish Balay       jj++;
2327a30f8f8cSSatish Balay     }
23287e06b45fSHong Zhang 
2329a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2330a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2331a30f8f8cSSatish Balay       nz   = procsnz[i];
2332a30f8f8cSSatish Balay       vals = buf;
2333a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23347adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2335a30f8f8cSSatish Balay     }
2336a30f8f8cSSatish Balay     /* the last proc */
2337a30f8f8cSSatish Balay     if (size != 1){
2338a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2339a30f8f8cSSatish Balay       vals = buf;
2340a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2341a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23427adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2343a30f8f8cSSatish Balay     }
2344a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23457e06b45fSHong Zhang 
2346a30f8f8cSSatish Balay   } else {
2347a30f8f8cSSatish Balay     /* receive numeric values */
234887828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2349a30f8f8cSSatish Balay 
2350a30f8f8cSSatish Balay     /* receive message of values*/
2351a30f8f8cSSatish Balay     vals   = buf;
2352a30f8f8cSSatish Balay     mycols = ibuf;
23537adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2354a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
235529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2356a30f8f8cSSatish Balay 
2357a30f8f8cSSatish Balay     /* insert into matrix */
2358a30f8f8cSSatish Balay     jj      = rstart*bs;
2359a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2360a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2361a30f8f8cSSatish Balay       mycols += locrowlens[i];
2362a30f8f8cSSatish Balay       vals   += locrowlens[i];
2363a30f8f8cSSatish Balay       jj++;
2364a30f8f8cSSatish Balay     }
2365a30f8f8cSSatish Balay   }
23667e06b45fSHong Zhang 
2367a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2368a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2369a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2370a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2371a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2372a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2373a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2374a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
237522191285SKris Buschelman   *newmat = A;
2376a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2377a30f8f8cSSatish Balay }
2378a30f8f8cSSatish Balay 
23794a2ae208SSatish Balay #undef __FUNCT__
23804a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2381dcf5cc72SBarry Smith /*XXXXX@
2382a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2383a30f8f8cSSatish Balay 
2384a30f8f8cSSatish Balay    Input Parameters:
2385a30f8f8cSSatish Balay .  mat  - the matrix
2386a30f8f8cSSatish Balay .  fact - factor
2387a30f8f8cSSatish Balay 
2388a30f8f8cSSatish Balay    Collective on Mat
2389a30f8f8cSSatish Balay 
2390a30f8f8cSSatish Balay    Level: advanced
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay   Notes:
2393a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2394a30f8f8cSSatish Balay 
2395a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay .seealso: MatSetOption()
2398dcf5cc72SBarry Smith @XXXXX*/
2399dcf5cc72SBarry Smith 
240024d5174aSHong Zhang 
24014a2ae208SSatish Balay #undef __FUNCT__
2402985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2403985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
240424d5174aSHong Zhang {
240524d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2406f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2407ca54ac64SHong Zhang   PetscReal      atmp;
240887828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2409dfbe8321SBarry Smith   PetscErrorCode ierr;
24101302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24111302d50aSBarry Smith   PetscMPIInt    rank,size;
24121302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
241387828ca2SBarry Smith   PetscScalar    *va;
24148a1c53f2SBarry Smith   MatScalar      *ba;
2415f4c0e9e4SHong Zhang   MPI_Status     stat;
241624d5174aSHong Zhang 
241724d5174aSHong Zhang   PetscFunctionBegin;
2418985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2419985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24201ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2421f4c0e9e4SHong Zhang 
24227adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24237adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2424f4c0e9e4SHong Zhang 
2425899cda47SBarry Smith   bs   = A->rmap.bs;
2426f4c0e9e4SHong Zhang   mbs  = a->mbs;
2427f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2428f4c0e9e4SHong Zhang   ba   = b->a;
2429f4c0e9e4SHong Zhang   bi   = b->i;
2430f4c0e9e4SHong Zhang   bj   = b->j;
2431f4c0e9e4SHong Zhang 
2432f4c0e9e4SHong Zhang   /* find ownerships */
2433899cda47SBarry Smith   rowners_bs = A->rmap.range;
2434f4c0e9e4SHong Zhang 
2435f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
243682502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2437ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2438f4c0e9e4SHong Zhang 
2439f4c0e9e4SHong Zhang   /* row_max for B */
2440b8475685SHong Zhang   if (rank != size-1){
2441f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2442f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2443f4c0e9e4SHong Zhang       brow  = bs*i;
2444f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2445f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2446f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2447ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
244804d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2449f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2450f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2451ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2452ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2453f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2454f4c0e9e4SHong Zhang           }
2455f4c0e9e4SHong Zhang         }
2456f4c0e9e4SHong Zhang         bj++;
2457f4c0e9e4SHong Zhang       }
2458f4c0e9e4SHong Zhang     }
2459f4c0e9e4SHong Zhang 
2460f4c0e9e4SHong Zhang     /* send values to its owners */
2461f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2462f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2463ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24647adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2465ca54ac64SHong Zhang     }
2466f4c0e9e4SHong Zhang   }
2467f4c0e9e4SHong Zhang 
2468f4c0e9e4SHong Zhang   /* receive values */
2469ca54ac64SHong Zhang   if (rank){
2470f4c0e9e4SHong Zhang     rvalues = work;
2471ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2472f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24737adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2474f4c0e9e4SHong Zhang       /* process values */
2475f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2476ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2477f4c0e9e4SHong Zhang       }
2478f4c0e9e4SHong Zhang     }
2479ca54ac64SHong Zhang   }
2480f4c0e9e4SHong Zhang 
24811ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2482ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
248324d5174aSHong Zhang   PetscFunctionReturn(0);
248424d5174aSHong Zhang }
24852798e883SHong Zhang 
24862798e883SHong Zhang #undef __FUNCT__
24872798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
24881302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24892798e883SHong Zhang {
24902798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2491dfbe8321SBarry Smith   PetscErrorCode ierr;
2492899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2493efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2494ffe4fb16SHong Zhang   Vec            bb1;
2495ffe4fb16SHong Zhang 
2496ffe4fb16SHong Zhang   PetscFunctionBegin;
249777431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2498ffe4fb16SHong Zhang   if (bs > 1)
2499ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2500ffe4fb16SHong Zhang 
2501ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2502ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2503ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2504ffe4fb16SHong Zhang       its--;
2505ffe4fb16SHong Zhang     }
2506ffe4fb16SHong Zhang 
2507ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2508ffe4fb16SHong Zhang     while (its--){
2509ffe4fb16SHong Zhang 
2510ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2511ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2512ffe4fb16SHong Zhang 
2513ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25141ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25151ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2516ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25171ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2518ffe4fb16SHong Zhang 
2519efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2520ffe4fb16SHong Zhang 
2521ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25221ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25231ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2524ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25251ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2526ffe4fb16SHong Zhang 
2527ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25282dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2529ffe4fb16SHong Zhang 
2530ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25311ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25321ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2533ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2534ffe4fb16SHong Zhang 
2535ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2536ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2537ffe4fb16SHong Zhang 
2538ffe4fb16SHong Zhang       /* local diagonal sweep */
2539ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2540ffe4fb16SHong Zhang     }
2541ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2542ffe4fb16SHong Zhang   } else {
2543ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2544ffe4fb16SHong Zhang   }
2545ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2546ffe4fb16SHong Zhang }
2547ffe4fb16SHong Zhang 
2548ffe4fb16SHong Zhang #undef __FUNCT__
2549ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25501302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2551ffe4fb16SHong Zhang {
2552ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2553dfbe8321SBarry Smith   PetscErrorCode ierr;
25542798e883SHong Zhang   Vec            lvec1,bb1;
25552798e883SHong Zhang 
25562798e883SHong Zhang   PetscFunctionBegin;
255777431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2558899cda47SBarry Smith   if (matin->rmap.bs > 1)
25592798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25602798e883SHong Zhang 
2561c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25622798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2563bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25642798e883SHong Zhang       its--;
25652798e883SHong Zhang     }
25662798e883SHong Zhang 
25672798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25682798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25692798e883SHong Zhang     while (its--){
2570ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25712798e883SHong Zhang 
25722798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25732798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2574efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
25752798e883SHong Zhang 
2576ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25772798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2578ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
25792798e883SHong Zhang 
25802798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2581efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25822798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25832798e883SHong Zhang 
2584ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
25852798e883SHong Zhang 
2586c14dc6b6SHong Zhang       /* diagonal sweep */
2587bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25882798e883SHong Zhang     }
25892798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25902798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2591c14dc6b6SHong Zhang   } else {
2592c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2593c14dc6b6SHong Zhang   }
25942798e883SHong Zhang   PetscFunctionReturn(0);
25952798e883SHong Zhang }
25962798e883SHong Zhang 
2597