1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 103a30f8f8cSSatish Balay N = nrow++ - 1; \ 104a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 105a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 106a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 107a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 110a30f8f8cSSatish Balay rp[_i] = bcol; \ 111a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 112a30f8f8cSSatish Balay a_noinsert:; \ 113a30f8f8cSSatish Balay ailen[brow] = nrow; \ 114a30f8f8cSSatish Balay } 115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 116a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 117a30f8f8cSSatish Balay { \ 118a30f8f8cSSatish Balay brow = row/bs; \ 119a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 120a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 121a30f8f8cSSatish Balay bcol = col/bs; \ 122a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 123a30f8f8cSSatish Balay low = 0; high = nrow; \ 124a30f8f8cSSatish Balay while (high-low > 3) { \ 125a30f8f8cSSatish Balay t = (low+high)/2; \ 126a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 127a30f8f8cSSatish Balay else low = t; \ 128a30f8f8cSSatish Balay } \ 129a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 130a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 131a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 132a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 133a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 134a30f8f8cSSatish Balay else *bap = value; \ 135a30f8f8cSSatish Balay goto b_noinsert; \ 136a30f8f8cSSatish Balay } \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 139085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 140421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay b_noinsert:; \ 151a30f8f8cSSatish Balay bilen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #endif 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1564a2ae208SSatish Balay #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 159a30f8f8cSSatish Balay { 160a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 161dfbe8321SBarry Smith PetscErrorCode ierr; 1621302d50aSBarry Smith PetscInt i,N = m*n; 163a30f8f8cSSatish Balay MatScalar *vsingle; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay PetscFunctionBegin; 166a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16705b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 169a30f8f8cSSatish Balay b->setvalueslen = N; 170a30f8f8cSSatish Balay } 171a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 172a30f8f8cSSatish Balay 173a30f8f8cSSatish Balay for (i=0; i<N; i++) { 174a30f8f8cSSatish Balay vsingle[i] = v[i]; 175a30f8f8cSSatish Balay } 176a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 177a30f8f8cSSatish Balay PetscFunctionReturn(0); 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 1804a2ae208SSatish Balay #undef __FUNCT__ 1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 183a30f8f8cSSatish Balay { 184a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 185dfbe8321SBarry Smith PetscErrorCode ierr; 1861302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 187a30f8f8cSSatish Balay MatScalar *vsingle; 188a30f8f8cSSatish Balay 189a30f8f8cSSatish Balay PetscFunctionBegin; 190a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19105b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 193a30f8f8cSSatish Balay b->setvalueslen = N; 194a30f8f8cSSatish Balay } 195a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 196a30f8f8cSSatish Balay for (i=0; i<N; i++) { 197a30f8f8cSSatish Balay vsingle[i] = v[i]; 198a30f8f8cSSatish Balay } 199a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 200a30f8f8cSSatish Balay PetscFunctionReturn(0); 201a30f8f8cSSatish Balay } 202a30f8f8cSSatish Balay #endif 203a30f8f8cSSatish Balay 204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 205a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 206a30f8f8cSSatish Balay */ 2074a2ae208SSatish Balay #undef __FUNCT__ 208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar" 2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 210a30f8f8cSSatish Balay { 211a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 212a30f8f8cSSatish Balay MatScalar value; 213b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 214dfbe8321SBarry Smith PetscErrorCode ierr; 2151302d50aSBarry Smith PetscInt i,j,row,col; 216899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 217899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 218899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 219a30f8f8cSSatish Balay 220a30f8f8cSSatish Balay /* Some Variables required in the macro */ 221a30f8f8cSSatish Balay Mat A = baij->A; 222a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2231302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 224a30f8f8cSSatish Balay MatScalar *aa=a->a; 225a30f8f8cSSatish Balay 226a30f8f8cSSatish Balay Mat B = baij->B; 227a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2281302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 229a30f8f8cSSatish Balay MatScalar *ba=b->a; 230a30f8f8cSSatish Balay 2311302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2321302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 233a30f8f8cSSatish Balay MatScalar *ap,*bap; 234a30f8f8cSSatish Balay 235a30f8f8cSSatish Balay /* for stash */ 236910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 237910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 238a30f8f8cSSatish Balay 239a30f8f8cSSatish Balay PetscFunctionBegin; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay if (!baij->donotstash){ 24259ffdab8SBarry Smith if (n > baij->n_loc) { 24359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 24459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 24559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 24659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 24759ffdab8SBarry Smith baij->n_loc = n; 24859ffdab8SBarry Smith } 24959ffdab8SBarry Smith in_loc = baij->in_loc; 25059ffdab8SBarry Smith v_loc = baij->v_loc; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay for (i=0; i<m; i++) { 254a30f8f8cSSatish Balay if (im[i] < 0) continue; 2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 256899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 257a30f8f8cSSatish Balay #endif 258a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 259a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 260a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 26201b2bd88SHong Zhang if (a->ignore_ltriangular){ 26301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26401b2bd88SHong Zhang } else { 2654e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 26601b2bd88SHong Zhang } 26701b2bd88SHong Zhang } 268a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 269a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 270a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 271a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 272a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 273a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 274a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 275a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 277899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 280a30f8f8cSSatish Balay if (mat->was_assembled) { 281a30f8f8cSSatish Balay if (!baij->colmap) { 282653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 285a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28671730473SSatish Balay col = col - 1; 287a30f8f8cSSatish Balay #else 28871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 289a30f8f8cSSatish Balay #endif 290a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 291a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 292a30f8f8cSSatish Balay col = in[j]; 293a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 294a30f8f8cSSatish Balay B = baij->B; 295a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 296a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 297a30f8f8cSSatish Balay ba=b->a; 29871730473SSatish Balay } else col += in[j]%bs; 299a30f8f8cSSatish Balay } else col = in[j]; 300a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 301a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 302a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay } else { /* off processor entry */ 306a30f8f8cSSatish Balay if (!baij->donotstash) { 307a30f8f8cSSatish Balay n_loc = 0; 308a30f8f8cSSatish Balay for (j=0; j<n; j++){ 309f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 310a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 311a30f8f8cSSatish Balay if (roworiented) { 312a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 313a30f8f8cSSatish Balay } else { 314a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay n_loc++; 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 319a30f8f8cSSatish Balay } 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay PetscFunctionReturn(0); 323a30f8f8cSSatish Balay } 324a30f8f8cSSatish Balay 3254a2ae208SSatish Balay #undef __FUNCT__ 326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 328a30f8f8cSSatish Balay { 3290880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 330f15d580aSBarry Smith const MatScalar *value; 331f15d580aSBarry Smith MatScalar *barray=baij->barray; 3320880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 333dfbe8321SBarry Smith PetscErrorCode ierr; 334899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 335899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 336899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3370880e062SHong Zhang 338a30f8f8cSSatish Balay PetscFunctionBegin; 3390880e062SHong Zhang if(!barray) { 3400880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3410880e062SHong Zhang baij->barray = barray; 3420880e062SHong Zhang } 3430880e062SHong Zhang 3440880e062SHong Zhang if (roworiented) { 3450880e062SHong Zhang stepval = (n-1)*bs; 3460880e062SHong Zhang } else { 3470880e062SHong Zhang stepval = (m-1)*bs; 3480880e062SHong Zhang } 3490880e062SHong Zhang for (i=0; i<m; i++) { 3500880e062SHong Zhang if (im[i] < 0) continue; 3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3530880e062SHong Zhang #endif 3540880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3550880e062SHong Zhang row = im[i] - rstart; 3560880e062SHong Zhang for (j=0; j<n; j++) { 3570880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3580880e062SHong Zhang if ((roworiented) && (n == 1)) { 359f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3600880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 361f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3620880e062SHong Zhang } else { /* Here a copy is required */ 3630880e062SHong Zhang if (roworiented) { 3640880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3650880e062SHong Zhang } else { 3660880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3670880e062SHong Zhang } 3680880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3690880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3700880e062SHong Zhang *barray++ = *value++; 3710880e062SHong Zhang } 3720880e062SHong Zhang } 3730880e062SHong Zhang barray -=bs2; 3740880e062SHong Zhang } 3750880e062SHong Zhang 3760880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3770880e062SHong Zhang col = in[j] - cstart; 3780880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3790880e062SHong Zhang } 3800880e062SHong Zhang else if (in[j] < 0) continue; 3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3830880e062SHong Zhang #endif 3840880e062SHong Zhang else { 3850880e062SHong Zhang if (mat->was_assembled) { 3860880e062SHong Zhang if (!baij->colmap) { 387653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3880880e062SHong Zhang } 3890880e062SHong Zhang 3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3921302d50aSBarry Smith { PetscInt data; 3930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3940880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3950880e062SHong Zhang } 3960880e062SHong Zhang #else 3970880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3980880e062SHong Zhang #endif 3990880e062SHong Zhang #endif 4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4020880e062SHong Zhang col = (col - 1)/bs; 4030880e062SHong Zhang #else 4040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4050880e062SHong Zhang #endif 4060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4070880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4080880e062SHong Zhang col = in[j]; 4090880e062SHong Zhang } 4100880e062SHong Zhang } 4110880e062SHong Zhang else col = in[j]; 412e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4130880e062SHong Zhang } 4140880e062SHong Zhang } 4150880e062SHong Zhang } else { 4160880e062SHong Zhang if (!baij->donotstash) { 4170880e062SHong Zhang if (roworiented) { 4180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4190880e062SHong Zhang } else { 4200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4210880e062SHong Zhang } 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang } 4250880e062SHong Zhang PetscFunctionReturn(0); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay 4284a2ae208SSatish Balay #undef __FUNCT__ 4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 431a30f8f8cSSatish Balay { 432f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4336849ba73SBarry Smith PetscErrorCode ierr; 434899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 435899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 436a30f8f8cSSatish Balay 437a30f8f8cSSatish Balay PetscFunctionBegin; 438a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43997e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 440899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 441a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 442a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 443a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44497e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 445899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 446a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 447a30f8f8cSSatish Balay col = idxn[j] - bscstart; 448c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 449a30f8f8cSSatish Balay } else { 450a30f8f8cSSatish Balay if (!baij->colmap) { 451653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 452a30f8f8cSSatish Balay } 453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 454a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 455a30f8f8cSSatish Balay data --; 456a30f8f8cSSatish Balay #else 457a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 458a30f8f8cSSatish Balay #endif 459a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 460a30f8f8cSSatish Balay else { 461a30f8f8cSSatish Balay col = data + idxn[j]%bs; 462e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 463a30f8f8cSSatish Balay } 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } 466a30f8f8cSSatish Balay } else { 46729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay } 470a30f8f8cSSatish Balay PetscFunctionReturn(0); 471a30f8f8cSSatish Balay } 472a30f8f8cSSatish Balay 4734a2ae208SSatish Balay #undef __FUNCT__ 4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 476a30f8f8cSSatish Balay { 477a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 478dfbe8321SBarry Smith PetscErrorCode ierr; 479a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 480a30f8f8cSSatish Balay 481a30f8f8cSSatish Balay PetscFunctionBegin; 482a30f8f8cSSatish Balay if (baij->size == 1) { 483a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 484a30f8f8cSSatish Balay } else { 485a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 486f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 487a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 488a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 489a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 490a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4917adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 492a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 493a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4940b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4950b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4960b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4970b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 498899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 499899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 5000b8dc8d2SHong Zhang MatScalar *v; 5010b8dc8d2SHong Zhang 502899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 503899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 504899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5050b8dc8d2SHong Zhang /* Amat */ 5060b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5070b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5080b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5090b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5100b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5110b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5120b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5130b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5140b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5150b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5160b8dc8d2SHong Zhang /* non-diagonal block */ 5170b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5180b8dc8d2SHong Zhang } 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang } 5220b8dc8d2SHong Zhang /* Bmat */ 5230b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5240b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5250b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5260b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5270b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5280b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5290b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5300b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5310b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5320b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5330b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5340b8dc8d2SHong Zhang } 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang } 5387adad957SLisandro Dalcin ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 5390b8dc8d2SHong Zhang *norm = 0.0; 540899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5410b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5420b8dc8d2SHong Zhang } 5430b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 544a30f8f8cSSatish Balay } else { 54529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay PetscFunctionReturn(0); 549a30f8f8cSSatish Balay } 550a30f8f8cSSatish Balay 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 554a30f8f8cSSatish Balay { 555a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 556dfbe8321SBarry Smith PetscErrorCode ierr; 5571302d50aSBarry Smith PetscInt nstash,reallocs; 558a30f8f8cSSatish Balay InsertMode addv; 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay PetscFunctionBegin; 561a30f8f8cSSatish Balay if (baij->donotstash) { 562a30f8f8cSSatish Balay PetscFunctionReturn(0); 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 5667adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 567a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 571a30f8f8cSSatish Balay 5721e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr); 5731e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5751e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 576a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5771e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 578a30f8f8cSSatish Balay PetscFunctionReturn(0); 579a30f8f8cSSatish Balay } 580a30f8f8cSSatish Balay 5814a2ae208SSatish Balay #undef __FUNCT__ 5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 584a30f8f8cSSatish Balay { 585a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 586a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5876849ba73SBarry Smith PetscErrorCode ierr; 58813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 589*e44c0bd4SBarry Smith PetscInt *row,*col; 590*e44c0bd4SBarry Smith PetscTruth other_disassembled; 59113f74950SBarry Smith PetscMPIInt n; 592a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 593a30f8f8cSSatish Balay MatScalar *val; 594a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 595a30f8f8cSSatish Balay 59691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay 599a30f8f8cSSatish Balay if (!baij->donotstash) { 600a30f8f8cSSatish Balay while (1) { 601a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 602a30f8f8cSSatish Balay if (!flg) break; 603a30f8f8cSSatish Balay 604a30f8f8cSSatish Balay for (i=0; i<n;) { 605a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 606a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 607a30f8f8cSSatish Balay if (j < n) ncols = j-i; 608a30f8f8cSSatish Balay else ncols = n-i; 609a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 610a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 611a30f8f8cSSatish Balay i = j; 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay } 614a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 615a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 616a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 617a30f8f8cSSatish Balay restore the original flags */ 618a30f8f8cSSatish Balay r1 = baij->roworiented; 619a30f8f8cSSatish Balay r2 = a->roworiented; 62091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 621a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 622a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 62391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 624a30f8f8cSSatish Balay while (1) { 625a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 626a30f8f8cSSatish Balay if (!flg) break; 627a30f8f8cSSatish Balay 628a30f8f8cSSatish Balay for (i=0; i<n;) { 629a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 630a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 631a30f8f8cSSatish Balay if (j < n) ncols = j-i; 632a30f8f8cSSatish Balay else ncols = n-i; 633a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 634a30f8f8cSSatish Balay i = j; 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay } 637a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 638a30f8f8cSSatish Balay baij->roworiented = r1; 639a30f8f8cSSatish Balay a->roworiented = r2; 64091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay 643a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 644a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 645a30f8f8cSSatish Balay 646a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 647a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 648a30f8f8cSSatish Balay /* 649a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 650a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 651a30f8f8cSSatish Balay */ 652a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 6537adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 654a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 655c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay } 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 66040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 661a30f8f8cSSatish Balay } 66291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 663a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 664a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 665a30f8f8cSSatish Balay 666a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 667a30f8f8cSSatish Balay baij->rowvalues = 0; 6685222a1afSHong Zhang 669a30f8f8cSSatish Balay PetscFunctionReturn(0); 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay 672799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 6734a2ae208SSatish Balay #undef __FUNCT__ 6744a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6756849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 676a30f8f8cSSatish Balay { 677a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 678dfbe8321SBarry Smith PetscErrorCode ierr; 679899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6801302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68132077d6dSBarry Smith PetscTruth iascii,isdraw; 682b0a32e0cSBarry Smith PetscViewer sviewer; 683f3ef73ceSBarry Smith PetscViewerFormat format; 684a30f8f8cSSatish Balay 685a30f8f8cSSatish Balay PetscFunctionBegin; 68632077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 687fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68832077d6dSBarry Smith if (iascii) { 689b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 690456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 691a30f8f8cSSatish Balay MatInfo info; 6927adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 693a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 695899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 696899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 697a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69877431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 699a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 70077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 701b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 70207d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 704a30f8f8cSSatish Balay PetscFunctionReturn(0); 705fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70677431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 707a30f8f8cSSatish Balay PetscFunctionReturn(0); 708c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 709c1490034SHong Zhang PetscFunctionReturn(0); 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay } 712a30f8f8cSSatish Balay 713a30f8f8cSSatish Balay if (isdraw) { 714b0a32e0cSBarry Smith PetscDraw draw; 715a30f8f8cSSatish Balay PetscTruth isnull; 716b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 717b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay 720a30f8f8cSSatish Balay if (size == 1) { 7217adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 722a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 723a30f8f8cSSatish Balay } else { 724a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 725a30f8f8cSSatish Balay Mat A; 72665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 728899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 729a30f8f8cSSatish Balay MatScalar *a; 730a30f8f8cSSatish Balay 731f204ca49SKris Buschelman /* Should this be the same type as mat? */ 7327adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 733a30f8f8cSSatish Balay if (!rank) { 734f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 735a30f8f8cSSatish Balay } else { 736f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 737a30f8f8cSSatish Balay } 738f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 739899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 74052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 741a30f8f8cSSatish Balay 742a30f8f8cSSatish Balay /* copy over the A part */ 74365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 744a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7451302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 748e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 749a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 750a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 751e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 752a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 753a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 754a30f8f8cSSatish Balay col++; a += bs; 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay } 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay /* copy over the B part */ 75965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 76065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 761a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 762e9f7bc9eSHong Zhang 763e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 764a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 765a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 766a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 767a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 768799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 769a30f8f8cSSatish Balay col++; a += bs; 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 775a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 776a30f8f8cSSatish Balay /* 777a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 778b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 779a30f8f8cSSatish Balay */ 780b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 78165d70643SHong Zhang if (!rank) { 7827adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 783a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 784a30f8f8cSSatish Balay } 785b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 786a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 787a30f8f8cSSatish Balay } 788a30f8f8cSSatish Balay PetscFunctionReturn(0); 789a30f8f8cSSatish Balay } 790a30f8f8cSSatish Balay 7914a2ae208SSatish Balay #undef __FUNCT__ 7924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 793dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 794a30f8f8cSSatish Balay { 795dfbe8321SBarry Smith PetscErrorCode ierr; 79632077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 797a30f8f8cSSatish Balay 798a30f8f8cSSatish Balay PetscFunctionBegin; 79932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 800fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 801b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 802fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80332077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 804a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 805a30f8f8cSSatish Balay } else { 8061302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 807a30f8f8cSSatish Balay } 808a30f8f8cSSatish Balay PetscFunctionReturn(0); 809a30f8f8cSSatish Balay } 810a30f8f8cSSatish Balay 8114a2ae208SSatish Balay #undef __FUNCT__ 8124a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 813dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 814a30f8f8cSSatish Balay { 815a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 816dfbe8321SBarry Smith PetscErrorCode ierr; 817a30f8f8cSSatish Balay 818a30f8f8cSSatish Balay PetscFunctionBegin; 819a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 820899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 821a30f8f8cSSatish Balay #endif 822a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 824a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 825a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 826a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 8279c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 828a30f8f8cSSatish Balay #else 82905b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 830a30f8f8cSSatish Balay #endif 83105b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 832a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 833a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83440781036SHong Zhang if (baij->slvec0) { 83540781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83640781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83740781036SHong Zhang } 83840781036SHong Zhang if (baij->slvec1) { 83940781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 84040781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 84140781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 84240781036SHong Zhang } 84340781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 84405b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84505b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84605b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 847a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84805b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 849a30f8f8cSSatish Balay #endif 85059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 85159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 852899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 853a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 854901853e0SKris Buschelman 855dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 856901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 857901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 858901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 859901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 860a30f8f8cSSatish Balay PetscFunctionReturn(0); 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay 8634a2ae208SSatish Balay #undef __FUNCT__ 864a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 865dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 866a9d4b620SHong Zhang { 867a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 868dfbe8321SBarry Smith PetscErrorCode ierr; 869899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 870a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 871a9d4b620SHong Zhang 872a9d4b620SHong Zhang PetscFunctionBegin; 873a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 874899cda47SBarry Smith if (nt != A->cmap.n) { 875a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 876a9d4b620SHong Zhang } 877a9d4b620SHong Zhang 878a9d4b620SHong Zhang /* diagonal part */ 879a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8802dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 881a9d4b620SHong Zhang 882a9d4b620SHong Zhang /* subdiagonal part */ 883a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 884fc165ae2SBarry Smith 885a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8861ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8871ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 888a9d4b620SHong Zhang 889fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 890fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8911ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 892fc165ae2SBarry Smith 893fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 894ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 895a9d4b620SHong Zhang /* supperdiagonal part */ 896a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 897a9d4b620SHong Zhang PetscFunctionReturn(0); 898a9d4b620SHong Zhang } 899a9d4b620SHong Zhang 900a9d4b620SHong Zhang #undef __FUNCT__ 90140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 902dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 903a30f8f8cSSatish Balay { 904a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 905dfbe8321SBarry Smith PetscErrorCode ierr; 9061302d50aSBarry Smith PetscInt nt; 907a30f8f8cSSatish Balay 908a30f8f8cSSatish Balay PetscFunctionBegin; 909a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 910899cda47SBarry Smith if (nt != A->cmap.n) { 91129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 912a30f8f8cSSatish Balay } 913a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 914899cda47SBarry Smith if (nt != A->rmap.N) { 91529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 916a30f8f8cSSatish Balay } 91765d70643SHong Zhang 918ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 919b941877fSHong Zhang /* do diagonal part */ 920b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 921b941877fSHong Zhang /* do supperdiagonal part */ 922ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 923b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 924b941877fSHong Zhang /* do subdiagonal part */ 925b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 926ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 927ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 92865d70643SHong Zhang 929a30f8f8cSSatish Balay PetscFunctionReturn(0); 930a30f8f8cSSatish Balay } 931a30f8f8cSSatish Balay 9324a2ae208SSatish Balay #undef __FUNCT__ 9334a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 934dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 935a30f8f8cSSatish Balay { 936de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 937dfbe8321SBarry Smith PetscErrorCode ierr; 938899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 939a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 940a9d4b620SHong Zhang 941a9d4b620SHong Zhang PetscFunctionBegin; 942a9d4b620SHong Zhang /* 9437adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9447adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 945a9d4b620SHong Zhang */ 946a9d4b620SHong Zhang /* diagonal part */ 947a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9482dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 949a9d4b620SHong Zhang 950a9d4b620SHong Zhang /* subdiagonal part */ 951a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 952a9d4b620SHong Zhang 953a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9541ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9551ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 956a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9571ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 958a9d4b620SHong Zhang 959ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9601ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 961ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 962a9d4b620SHong Zhang 963a9d4b620SHong Zhang /* supperdiagonal part */ 964a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 965a9d4b620SHong Zhang 966a9d4b620SHong Zhang PetscFunctionReturn(0); 967a9d4b620SHong Zhang } 968a9d4b620SHong Zhang 969a9d4b620SHong Zhang #undef __FUNCT__ 970a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 971dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 972a9d4b620SHong Zhang { 973a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 974dfbe8321SBarry Smith PetscErrorCode ierr; 975a30f8f8cSSatish Balay 976a30f8f8cSSatish Balay PetscFunctionBegin; 977ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 978b941877fSHong Zhang /* do diagonal part */ 979b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 980b941877fSHong Zhang /* do supperdiagonal part */ 981ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 982de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 983de8b6608SHong Zhang 984b941877fSHong Zhang /* do subdiagonal part */ 985a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 986ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 987ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 988aa482183SHong Zhang 989a30f8f8cSSatish Balay PetscFunctionReturn(0); 990a30f8f8cSSatish Balay } 991a30f8f8cSSatish Balay 992a30f8f8cSSatish Balay /* 993a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 994a30f8f8cSSatish Balay diagonal block 995a30f8f8cSSatish Balay */ 9964a2ae208SSatish Balay #undef __FUNCT__ 9974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 998dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 999a30f8f8cSSatish Balay { 1000a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1001dfbe8321SBarry Smith PetscErrorCode ierr; 1002a30f8f8cSSatish Balay 1003a30f8f8cSSatish Balay PetscFunctionBegin; 1004899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1005a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1006a30f8f8cSSatish Balay PetscFunctionReturn(0); 1007a30f8f8cSSatish Balay } 1008a30f8f8cSSatish Balay 10094a2ae208SSatish Balay #undef __FUNCT__ 10104a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1011f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1012a30f8f8cSSatish Balay { 1013a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1014dfbe8321SBarry Smith PetscErrorCode ierr; 1015a30f8f8cSSatish Balay 1016a30f8f8cSSatish Balay PetscFunctionBegin; 1017f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1018f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1019a30f8f8cSSatish Balay PetscFunctionReturn(0); 1020a30f8f8cSSatish Balay } 1021a30f8f8cSSatish Balay 10224a2ae208SSatish Balay #undef __FUNCT__ 10234a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10241302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1025a30f8f8cSSatish Balay { 1026d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1027d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1028d0d4cfc2SHong Zhang PetscErrorCode ierr; 1029899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1030899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1031899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1032d0d4cfc2SHong Zhang 1033a30f8f8cSSatish Balay PetscFunctionBegin; 1034d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1035d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1036d0d4cfc2SHong Zhang 1037d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1038d0d4cfc2SHong Zhang /* 1039d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1040d0d4cfc2SHong Zhang */ 1041d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1042d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1043d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1044d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1045d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1046d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1047d0d4cfc2SHong Zhang } 1048d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1049d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang 1052d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1053d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1054d0d4cfc2SHong Zhang 1055d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1056d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1057d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1058d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1059d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1060d0d4cfc2SHong Zhang nztot = nzA + nzB; 1061d0d4cfc2SHong Zhang 1062d0d4cfc2SHong Zhang cmap = mat->garray; 1063d0d4cfc2SHong Zhang if (v || idx) { 1064d0d4cfc2SHong Zhang if (nztot) { 1065d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1066d0d4cfc2SHong Zhang PetscInt imark = -1; 1067d0d4cfc2SHong Zhang if (v) { 1068d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1069d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1070d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1071d0d4cfc2SHong Zhang else break; 1072d0d4cfc2SHong Zhang } 1073d0d4cfc2SHong Zhang imark = i; 1074d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1075d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1076d0d4cfc2SHong Zhang } 1077d0d4cfc2SHong Zhang if (idx) { 1078d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1079d0d4cfc2SHong Zhang if (imark > -1) { 1080d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1081d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1082d0d4cfc2SHong Zhang } 1083d0d4cfc2SHong Zhang } else { 1084d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1085d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1086d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1087d0d4cfc2SHong Zhang else break; 1088d0d4cfc2SHong Zhang } 1089d0d4cfc2SHong Zhang imark = i; 1090d0d4cfc2SHong Zhang } 1091d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1092d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1093d0d4cfc2SHong Zhang } 1094d0d4cfc2SHong Zhang } else { 1095d0d4cfc2SHong Zhang if (idx) *idx = 0; 1096d0d4cfc2SHong Zhang if (v) *v = 0; 1097d0d4cfc2SHong Zhang } 1098d0d4cfc2SHong Zhang } 1099d0d4cfc2SHong Zhang *nz = nztot; 1100d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1101d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1102a30f8f8cSSatish Balay PetscFunctionReturn(0); 1103a30f8f8cSSatish Balay } 1104a30f8f8cSSatish Balay 11054a2ae208SSatish Balay #undef __FUNCT__ 11064a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11071302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1108a30f8f8cSSatish Balay { 1109a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1110a30f8f8cSSatish Balay 1111a30f8f8cSSatish Balay PetscFunctionBegin; 1112abc0a331SBarry Smith if (!baij->getrowactive) { 1113abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1114a30f8f8cSSatish Balay } 1115a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1116a30f8f8cSSatish Balay PetscFunctionReturn(0); 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay 11194a2ae208SSatish Balay #undef __FUNCT__ 1120d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1121d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1122d0d4cfc2SHong Zhang { 1123d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1124d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1125d0d4cfc2SHong Zhang 1126d0d4cfc2SHong Zhang PetscFunctionBegin; 1127d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1128d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1129d0d4cfc2SHong Zhang } 1130d0d4cfc2SHong Zhang #undef __FUNCT__ 1131d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1132d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1133d0d4cfc2SHong Zhang { 1134d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1135d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1136d0d4cfc2SHong Zhang 1137d0d4cfc2SHong Zhang PetscFunctionBegin; 1138d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1139d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1140d0d4cfc2SHong Zhang } 1141d0d4cfc2SHong Zhang 1142d0d4cfc2SHong Zhang #undef __FUNCT__ 114399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 114599cafbc1SBarry Smith { 114699cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 114799cafbc1SBarry Smith PetscErrorCode ierr; 114899cafbc1SBarry Smith 114999cafbc1SBarry Smith PetscFunctionBegin; 115099cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115199cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115299cafbc1SBarry Smith PetscFunctionReturn(0); 115399cafbc1SBarry Smith } 115499cafbc1SBarry Smith 115599cafbc1SBarry Smith #undef __FUNCT__ 115699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 115799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 115899cafbc1SBarry Smith { 115999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 116099cafbc1SBarry Smith PetscErrorCode ierr; 116199cafbc1SBarry Smith 116299cafbc1SBarry Smith PetscFunctionBegin; 116399cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116499cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 116599cafbc1SBarry Smith PetscFunctionReturn(0); 116699cafbc1SBarry Smith } 116799cafbc1SBarry Smith 116899cafbc1SBarry Smith #undef __FUNCT__ 11694a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1170dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1171a30f8f8cSSatish Balay { 1172a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1173dfbe8321SBarry Smith PetscErrorCode ierr; 1174a30f8f8cSSatish Balay 1175a30f8f8cSSatish Balay PetscFunctionBegin; 1176a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1178a30f8f8cSSatish Balay PetscFunctionReturn(0); 1179a30f8f8cSSatish Balay } 1180a30f8f8cSSatish Balay 11814a2ae208SSatish Balay #undef __FUNCT__ 11824a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1183dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1184a30f8f8cSSatish Balay { 1185a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1186a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1187dfbe8321SBarry Smith PetscErrorCode ierr; 1188a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1189a30f8f8cSSatish Balay 1190a30f8f8cSSatish Balay PetscFunctionBegin; 1191899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1192a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1193a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1194a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1195a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1196a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1197a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1198a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1199a30f8f8cSSatish Balay info->nz_used = isend[0]; 1200a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1201a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1202a30f8f8cSSatish Balay info->memory = isend[3]; 1203a30f8f8cSSatish Balay info->mallocs = isend[4]; 1204a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 12057adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1206a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1207a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1208a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1209a30f8f8cSSatish Balay info->memory = irecv[3]; 1210a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1211a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 12127adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1213a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1214a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1215a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1216a30f8f8cSSatish Balay info->memory = irecv[3]; 1217a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1218a30f8f8cSSatish Balay } else { 121977431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1220a30f8f8cSSatish Balay } 1221899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1222899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1223899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1224899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1225a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1226a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1227a30f8f8cSSatish Balay info->factor_mallocs = 0; 1228a30f8f8cSSatish Balay PetscFunctionReturn(0); 1229a30f8f8cSSatish Balay } 1230a30f8f8cSSatish Balay 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 12334e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1234a30f8f8cSSatish Balay { 1235a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1236d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1237dfbe8321SBarry Smith PetscErrorCode ierr; 1238a30f8f8cSSatish Balay 1239a30f8f8cSSatish Balay PetscFunctionBegin; 1240e98b92d7SKris Buschelman switch (op) { 1241512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1242e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1243e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1244e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12454e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12464e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1247e98b92d7SKris Buschelman break; 1248e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12494e0d8c25SBarry Smith a->roworiented = flg; 12504e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12514e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1252e98b92d7SKris Buschelman break; 12534e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1254290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1255e98b92d7SKris Buschelman break; 1256e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12574e0d8c25SBarry Smith a->donotstash = flg; 1258e98b92d7SKris Buschelman break; 1259e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12604e0d8c25SBarry Smith a->ht_flag = flg; 1261e98b92d7SKris Buschelman break; 12629a4540c5SBarry Smith case MAT_HERMITIAN: 12634e0d8c25SBarry Smith if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 126477e54ba9SKris Buschelman case MAT_SYMMETRIC: 126577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12669a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12674e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1268290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 126977e54ba9SKris Buschelman break; 1270d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12714e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1272d0d4cfc2SHong Zhang break; 1273d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12744e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1275d0d4cfc2SHong Zhang break; 1276d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12774e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1278d0d4cfc2SHong Zhang break; 1279e98b92d7SKris Buschelman default: 1280ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1281a30f8f8cSSatish Balay } 1282a30f8f8cSSatish Balay PetscFunctionReturn(0); 1283a30f8f8cSSatish Balay } 1284a30f8f8cSSatish Balay 12854a2ae208SSatish Balay #undef __FUNCT__ 12868115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1287dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1288a30f8f8cSSatish Balay { 1289dfbe8321SBarry Smith PetscErrorCode ierr; 1290a30f8f8cSSatish Balay PetscFunctionBegin; 1291999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12928115998fSBarry Smith PetscFunctionReturn(0); 1293a30f8f8cSSatish Balay } 1294a30f8f8cSSatish Balay 12954a2ae208SSatish Balay #undef __FUNCT__ 12964a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1297dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1298a30f8f8cSSatish Balay { 1299a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1300a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1301dfbe8321SBarry Smith PetscErrorCode ierr; 13025e90f9d9SHong Zhang PetscInt nv,m,n; 1303b3bf805bSHong Zhang PetscTruth flg; 1304a30f8f8cSSatish Balay 1305a30f8f8cSSatish Balay PetscFunctionBegin; 1306a30f8f8cSSatish Balay if (ll != rr){ 1307b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1308b3bf805bSHong Zhang if (!flg) 130929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1310a30f8f8cSSatish Balay } 1311b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1312b3bf805bSHong Zhang 13135e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13145e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1315b3bf805bSHong Zhang 13165e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13175e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13185e90f9d9SHong Zhang 1319ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13205e90f9d9SHong Zhang 13215e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1322a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13235e90f9d9SHong Zhang 13245e90f9d9SHong Zhang /* scale the diagonal part */ 1325a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1326a30f8f8cSSatish Balay 13275e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1328ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1329a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1330a30f8f8cSSatish Balay PetscFunctionReturn(0); 1331a30f8f8cSSatish Balay } 1332a30f8f8cSSatish Balay 13334a2ae208SSatish Balay #undef __FUNCT__ 13344a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1335dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1336a30f8f8cSSatish Balay { 1337f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1338dfbe8321SBarry Smith PetscErrorCode ierr; 1339a30f8f8cSSatish Balay 1340a30f8f8cSSatish Balay PetscFunctionBegin; 1341a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1342a30f8f8cSSatish Balay PetscFunctionReturn(0); 1343a30f8f8cSSatish Balay } 1344a30f8f8cSSatish Balay 13456849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1346a30f8f8cSSatish Balay 13474a2ae208SSatish Balay #undef __FUNCT__ 13484a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1349dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1350a30f8f8cSSatish Balay { 1351a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1352a30f8f8cSSatish Balay Mat a,b,c,d; 1353a30f8f8cSSatish Balay PetscTruth flg; 1354dfbe8321SBarry Smith PetscErrorCode ierr; 1355a30f8f8cSSatish Balay 1356a30f8f8cSSatish Balay PetscFunctionBegin; 1357a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1358a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1359a30f8f8cSSatish Balay 1360a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1361abc0a331SBarry Smith if (flg) { 1362a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1363a30f8f8cSSatish Balay } 13647adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1365a30f8f8cSSatish Balay PetscFunctionReturn(0); 1366a30f8f8cSSatish Balay } 1367a30f8f8cSSatish Balay 13684a2ae208SSatish Balay #undef __FUNCT__ 13693c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13703c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13713c896bc6SHong Zhang { 13723c896bc6SHong Zhang PetscErrorCode ierr; 13733c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13743c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13753c896bc6SHong Zhang 13763c896bc6SHong Zhang PetscFunctionBegin; 13773c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13783c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1379d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13803c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1381d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13823c896bc6SHong Zhang } else { 13833c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13843c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13853c896bc6SHong Zhang } 13863c896bc6SHong Zhang PetscFunctionReturn(0); 13873c896bc6SHong Zhang } 13883c896bc6SHong Zhang 13893c896bc6SHong Zhang #undef __FUNCT__ 13904a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1391dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1392273d9f13SBarry Smith { 1393dfbe8321SBarry Smith PetscErrorCode ierr; 1394273d9f13SBarry Smith 1395273d9f13SBarry Smith PetscFunctionBegin; 13967edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1397273d9f13SBarry Smith PetscFunctionReturn(0); 1398273d9f13SBarry Smith } 1399a5e6ed63SBarry Smith 14004fe895cdSHong Zhang #include "petscblaslapack.h" 14014fe895cdSHong Zhang #undef __FUNCT__ 14024fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14034fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14044fe895cdSHong Zhang { 14054fe895cdSHong Zhang PetscErrorCode ierr; 14064fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14074fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14084fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14094fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14104fe895cdSHong Zhang 14114fe895cdSHong Zhang PetscFunctionBegin; 14124fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14134fe895cdSHong Zhang PetscScalar alpha = a; 14144fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14154fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14160805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 14174fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14184fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14194fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14200805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 14214fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14224fe895cdSHong Zhang } else { 1423d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14244fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1425d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14264fe895cdSHong Zhang } 14274fe895cdSHong Zhang PetscFunctionReturn(0); 14284fe895cdSHong Zhang } 14294fe895cdSHong Zhang 1430a5e6ed63SBarry Smith #undef __FUNCT__ 1431a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14321302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1433a5e6ed63SBarry Smith { 14346849ba73SBarry Smith PetscErrorCode ierr; 14351302d50aSBarry Smith PetscInt i; 1436a5e6ed63SBarry Smith PetscTruth flg; 1437a5e6ed63SBarry Smith 14386849ba73SBarry Smith PetscFunctionBegin; 1439a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1440a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1441a5e6ed63SBarry Smith if (!flg) { 14421302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1443a5e6ed63SBarry Smith } 1444a5e6ed63SBarry Smith } 1445a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1446a5e6ed63SBarry Smith PetscFunctionReturn(0); 1447a5e6ed63SBarry Smith } 1448a5e6ed63SBarry Smith 1449a5e6ed63SBarry Smith 1450a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1451a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1452a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1453a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1454a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1455a9d4b620SHong Zhang MatMult_MPISBAIJ, 145697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1457431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1458431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 146297304618SKris Buschelman /*10*/ 0, 1463a30f8f8cSSatish Balay 0, 1464a30f8f8cSSatish Balay 0, 14652798e883SHong Zhang MatRelax_MPISBAIJ, 1466a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 146797304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1468a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1469a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1470a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1471a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 147297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1473a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1476a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1477dcf5cc72SBarry Smith /*25*/ 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 148297304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1483b5df2d14SHong Zhang 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 148797304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 14924fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1493a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1494d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1495a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14963c896bc6SHong Zhang MatCopy_MPISBAIJ, 14978c07d4e3SBarry Smith /*45*/ 0, 1498a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 1502521d7252SBarry Smith /*50*/ 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 150797304618SKris Buschelman /*55*/ 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 151297304618SKris Buschelman /*60*/ 0, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay 0, 1515357abbc8SBarry Smith 0, 151624d5174aSHong Zhang 0, 151797304618SKris Buschelman /*65*/ 0, 151824d5174aSHong Zhang 0, 151924d5174aSHong Zhang 0, 152024d5174aSHong Zhang 0, 152124d5174aSHong Zhang 0, 1522985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ, 152324d5174aSHong Zhang 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 152697304618SKris Buschelman 0, 152797304618SKris Buschelman /*75*/ 0, 152897304618SKris Buschelman 0, 152997304618SKris Buschelman 0, 153097304618SKris Buschelman 0, 153197304618SKris Buschelman 0, 153297304618SKris Buschelman /*80*/ 0, 153397304618SKris Buschelman 0, 153497304618SKris Buschelman 0, 153597304618SKris Buschelman 0, 1536865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1537865e5f61SKris Buschelman /*85*/ 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 1540865e5f61SKris Buschelman 0, 1541865e5f61SKris Buschelman 0, 1542865e5f61SKris Buschelman /*90*/ 0, 1543865e5f61SKris Buschelman 0, 1544865e5f61SKris Buschelman 0, 1545865e5f61SKris Buschelman 0, 1546865e5f61SKris Buschelman 0, 1547865e5f61SKris Buschelman /*95*/ 0, 1548865e5f61SKris Buschelman 0, 1549865e5f61SKris Buschelman 0, 155099cafbc1SBarry Smith 0, 155199cafbc1SBarry Smith 0, 155299cafbc1SBarry Smith /*100*/0, 155399cafbc1SBarry Smith 0, 155499cafbc1SBarry Smith 0, 155599cafbc1SBarry Smith 0, 155699cafbc1SBarry Smith 0, 155799cafbc1SBarry Smith /*105*/0, 155899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1559d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1560d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1561d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 156299cafbc1SBarry Smith }; 1563a30f8f8cSSatish Balay 1564a30f8f8cSSatish Balay 1565a30f8f8cSSatish Balay EXTERN_C_BEGIN 15664a2ae208SSatish Balay #undef __FUNCT__ 15674a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1568be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1569a30f8f8cSSatish Balay { 1570a30f8f8cSSatish Balay PetscFunctionBegin; 1571a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1572a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1573a30f8f8cSSatish Balay PetscFunctionReturn(0); 1574a30f8f8cSSatish Balay } 1575a30f8f8cSSatish Balay EXTERN_C_END 1576a30f8f8cSSatish Balay 1577273d9f13SBarry Smith EXTERN_C_BEGIN 15784a2ae208SSatish Balay #undef __FUNCT__ 1579a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1580be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1581a23d5eceSKris Buschelman { 1582a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1583dfbe8321SBarry Smith PetscErrorCode ierr; 15841302d50aSBarry Smith PetscInt i,mbs,Mbs; 1585a23d5eceSKris Buschelman 1586a23d5eceSKris Buschelman PetscFunctionBegin; 15877adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 15888c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 15898c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1590a23d5eceSKris Buschelman 1591a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1592a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1593a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 159477431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 159577431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1596899cda47SBarry Smith 1597899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 15986148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 15996148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 1600899cda47SBarry Smith 1601a23d5eceSKris Buschelman if (d_nnz) { 1602899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 160377431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1604a23d5eceSKris Buschelman } 1605a23d5eceSKris Buschelman } 1606a23d5eceSKris Buschelman if (o_nnz) { 1607899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 160877431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1609a23d5eceSKris Buschelman } 1610a23d5eceSKris Buschelman } 1611a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1612a23d5eceSKris Buschelman 1613a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1614899cda47SBarry Smith mbs = B->rmap.n/bs; 1615899cda47SBarry Smith Mbs = B->rmap.N/bs; 1616899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1617899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1618a23d5eceSKris Buschelman } 1619a23d5eceSKris Buschelman 1620899cda47SBarry Smith B->rmap.bs = bs; 1621a23d5eceSKris Buschelman b->bs2 = bs*bs; 1622a23d5eceSKris Buschelman b->mbs = mbs; 1623a23d5eceSKris Buschelman b->nbs = mbs; 1624a23d5eceSKris Buschelman b->Mbs = Mbs; 1625a23d5eceSKris Buschelman b->Nbs = Mbs; 1626a23d5eceSKris Buschelman 1627a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1628899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1629a23d5eceSKris Buschelman } 1630899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1631899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1632a23d5eceSKris Buschelman 1633899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1634899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1635a23d5eceSKris Buschelman 1636f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1637899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16389c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1639c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 164052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16419c097c71SKris Buschelman 1642f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1643899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16444aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1645589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 164652e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1647a23d5eceSKris Buschelman 1648a23d5eceSKris Buschelman /* build cache for off array entries formed */ 16497adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1650a23d5eceSKris Buschelman 1651a23d5eceSKris Buschelman PetscFunctionReturn(0); 1652a23d5eceSKris Buschelman } 1653a23d5eceSKris Buschelman EXTERN_C_END 1654a23d5eceSKris Buschelman 16550bad9183SKris Buschelman /*MC 1656fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16570bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16580bad9183SKris Buschelman 16590bad9183SKris Buschelman Options Database Keys: 16600bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16610bad9183SKris Buschelman 16620bad9183SKris Buschelman Level: beginner 16630bad9183SKris Buschelman 16640bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16650bad9183SKris Buschelman M*/ 16660bad9183SKris Buschelman 1667a23d5eceSKris Buschelman EXTERN_C_BEGIN 1668a23d5eceSKris Buschelman #undef __FUNCT__ 16694a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1670be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1671b5df2d14SHong Zhang { 1672b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1673dfbe8321SBarry Smith PetscErrorCode ierr; 1674b5df2d14SHong Zhang PetscTruth flg; 1675b5df2d14SHong Zhang 1676b5df2d14SHong Zhang PetscFunctionBegin; 1677b5df2d14SHong Zhang 167838f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1679b0a32e0cSBarry Smith B->data = (void*)b; 1680b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1681b5df2d14SHong Zhang 1682b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1683b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1684b5df2d14SHong Zhang B->mapping = 0; 1685b5df2d14SHong Zhang B->factor = 0; 1686b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1687b5df2d14SHong Zhang 1688b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16897adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16907adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1691b5df2d14SHong Zhang 1692b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1693899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang /* build cache for off array entries formed */ 16967adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1697b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1698b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1699b5df2d14SHong Zhang b->garray = PETSC_NULL; 1700b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1701b5df2d14SHong Zhang 1702f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1703b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 170464a35ccbSBarry Smith b->setvalueslen = 0; 1705b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1706b5df2d14SHong Zhang #endif 1707b5df2d14SHong Zhang 1708b5df2d14SHong Zhang /* stuff used in block assembly */ 1709b5df2d14SHong Zhang b->barray = 0; 1710b5df2d14SHong Zhang 1711b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1712b5df2d14SHong Zhang b->lvec = 0; 1713b5df2d14SHong Zhang b->Mvctx = 0; 171440781036SHong Zhang b->slvec0 = 0; 171540781036SHong Zhang b->slvec0b = 0; 171640781036SHong Zhang b->slvec1 = 0; 171740781036SHong Zhang b->slvec1a = 0; 171840781036SHong Zhang b->slvec1b = 0; 171940781036SHong Zhang b->sMvctx = 0; 1720b5df2d14SHong Zhang 1721b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1722b5df2d14SHong Zhang b->rowindices = 0; 1723b5df2d14SHong Zhang b->rowvalues = 0; 1724b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1725b5df2d14SHong Zhang 1726b5df2d14SHong Zhang /* hash table stuff */ 1727b5df2d14SHong Zhang b->ht = 0; 1728b5df2d14SHong Zhang b->hd = 0; 1729b5df2d14SHong Zhang b->ht_size = 0; 1730b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1731b5df2d14SHong Zhang b->ht_fact = 0; 1732b5df2d14SHong Zhang b->ht_total_ct = 0; 1733b5df2d14SHong Zhang b->ht_insert_ct = 0; 1734b5df2d14SHong Zhang 173559ffdab8SBarry Smith b->in_loc = 0; 173659ffdab8SBarry Smith b->v_loc = 0; 173759ffdab8SBarry Smith b->n_loc = 0; 17387adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17398c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1740b5df2d14SHong Zhang if (flg) { 1741f6275e2eSBarry Smith PetscReal fact = 1.39; 17424e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17438c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1744b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1745b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17461e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1747b5df2d14SHong Zhang } 17488c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17498c07d4e3SBarry Smith 1750b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1751b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1752b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1753b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1754b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1755b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1756b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1757b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1758b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1759a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1760a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1761a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 176223ce1328SBarry Smith B->symmetric = PETSC_TRUE; 176323ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 176423ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 176523ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 176617667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1767b5df2d14SHong Zhang PetscFunctionReturn(0); 1768b5df2d14SHong Zhang } 1769273d9f13SBarry Smith EXTERN_C_END 1770b5df2d14SHong Zhang 1771209238afSKris Buschelman /*MC 1772002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1773209238afSKris Buschelman 1774209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1775209238afSKris Buschelman and MATMPISBAIJ otherwise. 1776209238afSKris Buschelman 1777209238afSKris Buschelman Options Database Keys: 1778209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1779209238afSKris Buschelman 1780209238afSKris Buschelman Level: beginner 1781209238afSKris Buschelman 1782209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1783209238afSKris Buschelman M*/ 1784209238afSKris Buschelman 1785209238afSKris Buschelman EXTERN_C_BEGIN 1786209238afSKris Buschelman #undef __FUNCT__ 1787209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1788be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1789dfbe8321SBarry Smith { 17906849ba73SBarry Smith PetscErrorCode ierr; 17911302d50aSBarry Smith PetscMPIInt size; 1792209238afSKris Buschelman 1793209238afSKris Buschelman PetscFunctionBegin; 17947adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1795209238afSKris Buschelman if (size == 1) { 1796209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1797209238afSKris Buschelman } else { 1798209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1799209238afSKris Buschelman } 1800209238afSKris Buschelman PetscFunctionReturn(0); 1801209238afSKris Buschelman } 1802209238afSKris Buschelman EXTERN_C_END 1803209238afSKris Buschelman 18044a2ae208SSatish Balay #undef __FUNCT__ 18054a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1806b5df2d14SHong Zhang /*@C 1807b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1808b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1809b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1810b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1811b5df2d14SHong Zhang 1812b5df2d14SHong Zhang Collective on Mat 1813b5df2d14SHong Zhang 1814b5df2d14SHong Zhang Input Parameters: 1815b5df2d14SHong Zhang + A - the matrix 1816b5df2d14SHong Zhang . bs - size of blockk 1817b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1818b5df2d14SHong Zhang submatrix (same for all local rows) 1819b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18206d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18216d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18226d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1823b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1824b5df2d14SHong Zhang submatrix (same for all local rows). 1825b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1826b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1827b5df2d14SHong Zhang each block row) or PETSC_NULL. 1828b5df2d14SHong Zhang 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang Options Database Keys: 1831b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1832b5df2d14SHong Zhang block calculations (much slower) 1833b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1834b5df2d14SHong Zhang 1835b5df2d14SHong Zhang Notes: 1836b5df2d14SHong Zhang 1837b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1838b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1839b5df2d14SHong Zhang 184049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 184149a6f317SBarry Smith 1842b5df2d14SHong Zhang Storage Information: 1843b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1844b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1845b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1846b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1849b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1850b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1851b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1852b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1853b5df2d14SHong Zhang 1854aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1855aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1856aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1857aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1858aa95bbe8SBarry Smith 1859b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1860b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1861b5df2d14SHong Zhang 1862b5df2d14SHong Zhang .vb 1863b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1864b5df2d14SHong Zhang ------------------- 1865b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1866b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1867b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1868b5df2d14SHong Zhang ------------------- 1869b5df2d14SHong Zhang .ve 1870b5df2d14SHong Zhang 1871b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1872b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18736d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18746d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1875b5df2d14SHong Zhang 18766d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18776d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1878b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1879b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1880b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1881b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1882b5df2d14SHong Zhang matrices. 1883b5df2d14SHong Zhang 1884b5df2d14SHong Zhang Level: intermediate 1885b5df2d14SHong Zhang 1886b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1887b5df2d14SHong Zhang 1888b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1889b5df2d14SHong Zhang @*/ 1890be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1891b5df2d14SHong Zhang { 18921302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1893b5df2d14SHong Zhang 1894b5df2d14SHong Zhang PetscFunctionBegin; 1895a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1896a23d5eceSKris Buschelman if (f) { 1897a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1898b5df2d14SHong Zhang } 1899b5df2d14SHong Zhang PetscFunctionReturn(0); 1900b5df2d14SHong Zhang } 1901b5df2d14SHong Zhang 19024a2ae208SSatish Balay #undef __FUNCT__ 19034a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1904a30f8f8cSSatish Balay /*@C 1905a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1906a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1907a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1908a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1909a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1910a30f8f8cSSatish Balay 1911a30f8f8cSSatish Balay Collective on MPI_Comm 1912a30f8f8cSSatish Balay 1913a30f8f8cSSatish Balay Input Parameters: 1914a30f8f8cSSatish Balay + comm - MPI communicator 1915a30f8f8cSSatish Balay . bs - size of blockk 1916a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1917a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1918a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1919a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1920a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1921a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1922a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1923a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1924a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1925a30f8f8cSSatish Balay submatrix (same for all local rows) 1926a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19276d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19286d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19296d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1930a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1931a30f8f8cSSatish Balay submatrix (same for all local rows). 1932a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1933a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1934a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay Output Parameter: 1937a30f8f8cSSatish Balay . A - the matrix 1938a30f8f8cSSatish Balay 1939a30f8f8cSSatish Balay Options Database Keys: 1940a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1941a30f8f8cSSatish Balay block calculations (much slower) 1942a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1943a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1944a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1945a30f8f8cSSatish Balay 1946175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1947175b88e8SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely 1948175b88e8SBarry Smith true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles. 1949175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1950175b88e8SBarry Smith 1951a30f8f8cSSatish Balay Notes: 1952d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19536d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1954d1be2dadSMatthew Knepley 1955a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1956a30f8f8cSSatish Balay (possibly both). 1957a30f8f8cSSatish Balay 1958a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1959a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1960a30f8f8cSSatish Balay 196149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 196249a6f317SBarry Smith 1963a30f8f8cSSatish Balay Storage Information: 1964a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1965a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1966a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1967a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1968a30f8f8cSSatish Balay 1969a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1970a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1971a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1972a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1973a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1974a30f8f8cSSatish Balay 1975a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1976a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1977a30f8f8cSSatish Balay 1978a30f8f8cSSatish Balay .vb 1979a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1980a30f8f8cSSatish Balay ------------------- 1981a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1982a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1983a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1984a30f8f8cSSatish Balay ------------------- 1985a30f8f8cSSatish Balay .ve 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1988a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19896d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19906d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1991a30f8f8cSSatish Balay 19926d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19936d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1994a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1995a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1996a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1997a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1998a30f8f8cSSatish Balay matrices. 1999a30f8f8cSSatish Balay 2000a30f8f8cSSatish Balay Level: intermediate 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2003a30f8f8cSSatish Balay 2004a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2005a30f8f8cSSatish Balay @*/ 2006a30f8f8cSSatish Balay 2007be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2008a30f8f8cSSatish Balay { 20096849ba73SBarry Smith PetscErrorCode ierr; 20101302d50aSBarry Smith PetscMPIInt size; 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay PetscFunctionBegin; 2013f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2014f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2015273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2016273d9f13SBarry Smith if (size > 1) { 2017b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2018b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2019273d9f13SBarry Smith } else { 2020273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2021273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2022273d9f13SBarry Smith } 2023a30f8f8cSSatish Balay PetscFunctionReturn(0); 2024a30f8f8cSSatish Balay } 2025a30f8f8cSSatish Balay 2026a30f8f8cSSatish Balay 20274a2ae208SSatish Balay #undef __FUNCT__ 20284a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20296849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2030a30f8f8cSSatish Balay { 2031a30f8f8cSSatish Balay Mat mat; 2032a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2033dfbe8321SBarry Smith PetscErrorCode ierr; 2034899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2035387bc808SHong Zhang PetscScalar *array; 2036a30f8f8cSSatish Balay 2037a30f8f8cSSatish Balay PetscFunctionBegin; 2038a30f8f8cSSatish Balay *newmat = 0; 20397adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2040899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 20417adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20421d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20437adad957SLisandro Dalcin ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 20447adad957SLisandro Dalcin ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2045e1b6402fSHong Zhang 204682327fa8SHong Zhang mat->factor = matin->factor; 2047273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 204882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20497fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20507fff6886SHong Zhang 2051b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2052a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2053a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2054a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2055a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2056a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2057a30f8f8cSSatish Balay 2058899cda47SBarry Smith 2059a30f8f8cSSatish Balay a->size = oldmat->size; 2060a30f8f8cSSatish Balay a->rank = oldmat->rank; 2061a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2062a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2063a30f8f8cSSatish Balay a->rowindices = 0; 2064a30f8f8cSSatish Balay a->rowvalues = 0; 2065a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2066a30f8f8cSSatish Balay a->barray = 0; 2067899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2068899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2069899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2070899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay /* hash table stuff */ 2073a30f8f8cSSatish Balay a->ht = 0; 2074a30f8f8cSSatish Balay a->hd = 0; 2075a30f8f8cSSatish Balay a->ht_size = 0; 2076a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2077a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2078a30f8f8cSSatish Balay a->ht_total_ct = 0; 2079a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2080a30f8f8cSSatish Balay 2081899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 20827adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 20837adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2084a30f8f8cSSatish Balay if (oldmat->colmap) { 2085a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2086a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2087a30f8f8cSSatish Balay #else 20881302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 208952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20901302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2091a30f8f8cSSatish Balay #endif 2092a30f8f8cSSatish Balay } else a->colmap = 0; 2093387bc808SHong Zhang 2094a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20951302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 209652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20971302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2098a30f8f8cSSatish Balay } else a->garray = 0; 2099a30f8f8cSSatish Balay 2100a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 210152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2102a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 210352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 210482327fa8SHong Zhang 210582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 210652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 210782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 210852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2109387bc808SHong Zhang 2110387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21111ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2112387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2113387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21141ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21151ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2116387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21171ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 211952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 212152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 212252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2123387bc808SHong Zhang 2124387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2125387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2126387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 212752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 212882327fa8SHong Zhang 2129a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 213052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2131a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 213252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21337adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2134a30f8f8cSSatish Balay *newmat = mat; 2135a30f8f8cSSatish Balay PetscFunctionReturn(0); 2136a30f8f8cSSatish Balay } 2137a30f8f8cSSatish Balay 2138a30f8f8cSSatish Balay #include "petscsys.h" 2139a30f8f8cSSatish Balay 21404a2ae208SSatish Balay #undef __FUNCT__ 21414a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2142f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2143a30f8f8cSSatish Balay { 2144a30f8f8cSSatish Balay Mat A; 21456849ba73SBarry Smith PetscErrorCode ierr; 214613f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 214787828ca2SBarry Smith PetscScalar *vals,*buf; 2148a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2149a30f8f8cSSatish Balay MPI_Status status; 2150*e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 215113f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21522fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21531302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21541302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21551302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 215613f74950SBarry Smith int fd; 2157a30f8f8cSSatish Balay 2158a30f8f8cSSatish Balay PetscFunctionBegin; 215977925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21608c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21618c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2162a30f8f8cSSatish Balay 2163a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2165a30f8f8cSSatish Balay if (!rank) { 2166b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2168552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2169a30f8f8cSSatish Balay if (header[3] < 0) { 217029bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2171a30f8f8cSSatish Balay } 2172a30f8f8cSSatish Balay } 2173a30f8f8cSSatish Balay 2174a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2175a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2176a30f8f8cSSatish Balay 217729bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2178a30f8f8cSSatish Balay 2179a30f8f8cSSatish Balay /* 2180a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2181a30f8f8cSSatish Balay divisible by the blocksize 2182a30f8f8cSSatish Balay */ 2183a30f8f8cSSatish Balay Mbs = M/bs; 2184a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2185a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2186a30f8f8cSSatish Balay else Mbs++; 2187a30f8f8cSSatish Balay if (extra_rows &&!rank) { 21881e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay 2191a30f8f8cSSatish Balay /* determine ownership of all rows */ 2192a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2193a30f8f8cSSatish Balay m = mbs*bs; 2194a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2195a30f8f8cSSatish Balay browners = rowners + size + 1; 2196*e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2197*e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay rowners[0] = 0; 2199a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2200a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2201a30f8f8cSSatish Balay rstart = rowners[rank]; 2202a30f8f8cSSatish Balay rend = rowners[rank+1]; 2203a30f8f8cSSatish Balay 2204a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22052fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2206a30f8f8cSSatish Balay if (!rank) { 22071302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2210a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2212a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2214a30f8f8cSSatish Balay } else { 2215a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2216a30f8f8cSSatish Balay } 2217a30f8f8cSSatish Balay 22180222edb1SHong Zhang if (!rank) { /* procs[0] */ 2219a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22201302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22211302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2222a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2223a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2224a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay } 2227a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay 2229a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2230a30f8f8cSSatish Balay maxnz = 0; 2231a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2232a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2233a30f8f8cSSatish Balay } 22341302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2235a30f8f8cSSatish Balay 2236a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2237a30f8f8cSSatish Balay nz = procsnz[0]; 22381302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2239a30f8f8cSSatish Balay mycols = ibuf; 2240a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2241a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2242a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2243a30f8f8cSSatish Balay 2244a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2245a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2246a30f8f8cSSatish Balay nz = procsnz[i]; 2247a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2248a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay } 2250a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2251a30f8f8cSSatish Balay if (size != 1) { 2252a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2253a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2254a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2255a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay } 2257a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22580222edb1SHong Zhang } else { /* procs[i], i>0 */ 2259a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2260a30f8f8cSSatish Balay nz = 0; 2261a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2262a30f8f8cSSatish Balay nz += locrowlens[i]; 2263a30f8f8cSSatish Balay } 22641302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay mycols = ibuf; 2266a30f8f8cSSatish Balay /* receive message of column indices*/ 2267a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2268a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 226929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2270a30f8f8cSSatish Balay } 2271a30f8f8cSSatish Balay 2272a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22731302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22751302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22761302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2277a30f8f8cSSatish Balay masked1 = mask + Mbs; 2278a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2279a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2280a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2281a30f8f8cSSatish Balay dcount = 0; 2282a30f8f8cSSatish Balay odcount = 0; 2283a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2284a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2285a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22860222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2287a30f8f8cSSatish Balay if (!mask[tmp]) { 2288a30f8f8cSSatish Balay mask[tmp] = 1; 22890222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22900222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2291a30f8f8cSSatish Balay } 2292a30f8f8cSSatish Balay } 2293a30f8f8cSSatish Balay rowcount++; 2294a30f8f8cSSatish Balay } 2295a30f8f8cSSatish Balay 22960222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22970222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2298a30f8f8cSSatish Balay 2299a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2300a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2301a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2302a30f8f8cSSatish Balay } 2303a30f8f8cSSatish Balay 2304a30f8f8cSSatish Balay /* create our matrix */ 2305f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2306f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 230722191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 230822191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2309a30f8f8cSSatish Balay 2310a30f8f8cSSatish Balay if (!rank) { 231187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2312a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2313a30f8f8cSSatish Balay nz = procsnz[0]; 2314a30f8f8cSSatish Balay vals = buf; 2315a30f8f8cSSatish Balay mycols = ibuf; 2316a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2317a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2318a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay /* insert into matrix */ 2321a30f8f8cSSatish Balay jj = rstart*bs; 2322a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23237e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2324a30f8f8cSSatish Balay mycols += locrowlens[i]; 2325a30f8f8cSSatish Balay vals += locrowlens[i]; 2326a30f8f8cSSatish Balay jj++; 2327a30f8f8cSSatish Balay } 23287e06b45fSHong Zhang 2329a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2330a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2331a30f8f8cSSatish Balay nz = procsnz[i]; 2332a30f8f8cSSatish Balay vals = buf; 2333a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23347adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2335a30f8f8cSSatish Balay } 2336a30f8f8cSSatish Balay /* the last proc */ 2337a30f8f8cSSatish Balay if (size != 1){ 2338a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2339a30f8f8cSSatish Balay vals = buf; 2340a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2341a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23427adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2343a30f8f8cSSatish Balay } 2344a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23457e06b45fSHong Zhang 2346a30f8f8cSSatish Balay } else { 2347a30f8f8cSSatish Balay /* receive numeric values */ 234887828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2349a30f8f8cSSatish Balay 2350a30f8f8cSSatish Balay /* receive message of values*/ 2351a30f8f8cSSatish Balay vals = buf; 2352a30f8f8cSSatish Balay mycols = ibuf; 23537adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2354a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 235529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2356a30f8f8cSSatish Balay 2357a30f8f8cSSatish Balay /* insert into matrix */ 2358a30f8f8cSSatish Balay jj = rstart*bs; 2359a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2360a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2361a30f8f8cSSatish Balay mycols += locrowlens[i]; 2362a30f8f8cSSatish Balay vals += locrowlens[i]; 2363a30f8f8cSSatish Balay jj++; 2364a30f8f8cSSatish Balay } 2365a30f8f8cSSatish Balay } 23667e06b45fSHong Zhang 2367a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2368a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2369a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2370a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2372a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2373a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2374a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 237522191285SKris Buschelman *newmat = A; 2376a30f8f8cSSatish Balay PetscFunctionReturn(0); 2377a30f8f8cSSatish Balay } 2378a30f8f8cSSatish Balay 23794a2ae208SSatish Balay #undef __FUNCT__ 23804a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2381dcf5cc72SBarry Smith /*XXXXX@ 2382a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2383a30f8f8cSSatish Balay 2384a30f8f8cSSatish Balay Input Parameters: 2385a30f8f8cSSatish Balay . mat - the matrix 2386a30f8f8cSSatish Balay . fact - factor 2387a30f8f8cSSatish Balay 2388a30f8f8cSSatish Balay Collective on Mat 2389a30f8f8cSSatish Balay 2390a30f8f8cSSatish Balay Level: advanced 2391a30f8f8cSSatish Balay 2392a30f8f8cSSatish Balay Notes: 2393a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2394a30f8f8cSSatish Balay 2395a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2396a30f8f8cSSatish Balay 2397a30f8f8cSSatish Balay .seealso: MatSetOption() 2398dcf5cc72SBarry Smith @XXXXX*/ 2399dcf5cc72SBarry Smith 240024d5174aSHong Zhang 24014a2ae208SSatish Balay #undef __FUNCT__ 2402985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2403985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 240424d5174aSHong Zhang { 240524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2406f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2407ca54ac64SHong Zhang PetscReal atmp; 240887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2409dfbe8321SBarry Smith PetscErrorCode ierr; 24101302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24111302d50aSBarry Smith PetscMPIInt rank,size; 24121302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 241387828ca2SBarry Smith PetscScalar *va; 24148a1c53f2SBarry Smith MatScalar *ba; 2415f4c0e9e4SHong Zhang MPI_Status stat; 241624d5174aSHong Zhang 241724d5174aSHong Zhang PetscFunctionBegin; 2418985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2419985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24201ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2421f4c0e9e4SHong Zhang 24227adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24237adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2424f4c0e9e4SHong Zhang 2425899cda47SBarry Smith bs = A->rmap.bs; 2426f4c0e9e4SHong Zhang mbs = a->mbs; 2427f4c0e9e4SHong Zhang Mbs = a->Mbs; 2428f4c0e9e4SHong Zhang ba = b->a; 2429f4c0e9e4SHong Zhang bi = b->i; 2430f4c0e9e4SHong Zhang bj = b->j; 2431f4c0e9e4SHong Zhang 2432f4c0e9e4SHong Zhang /* find ownerships */ 2433899cda47SBarry Smith rowners_bs = A->rmap.range; 2434f4c0e9e4SHong Zhang 2435f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 243682502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2437ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2438f4c0e9e4SHong Zhang 2439f4c0e9e4SHong Zhang /* row_max for B */ 2440b8475685SHong Zhang if (rank != size-1){ 2441f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2442f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2443f4c0e9e4SHong Zhang brow = bs*i; 2444f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2445f4c0e9e4SHong Zhang bcol = bs*(*bj); 2446f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2447ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 244804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2449f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2450f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2451ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2452ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2453f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2454f4c0e9e4SHong Zhang } 2455f4c0e9e4SHong Zhang } 2456f4c0e9e4SHong Zhang bj++; 2457f4c0e9e4SHong Zhang } 2458f4c0e9e4SHong Zhang } 2459f4c0e9e4SHong Zhang 2460f4c0e9e4SHong Zhang /* send values to its owners */ 2461f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2462f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2463ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24647adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2465ca54ac64SHong Zhang } 2466f4c0e9e4SHong Zhang } 2467f4c0e9e4SHong Zhang 2468f4c0e9e4SHong Zhang /* receive values */ 2469ca54ac64SHong Zhang if (rank){ 2470f4c0e9e4SHong Zhang rvalues = work; 2471ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2472f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24737adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2474f4c0e9e4SHong Zhang /* process values */ 2475f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2476ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2477f4c0e9e4SHong Zhang } 2478f4c0e9e4SHong Zhang } 2479ca54ac64SHong Zhang } 2480f4c0e9e4SHong Zhang 24811ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2482ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 248324d5174aSHong Zhang PetscFunctionReturn(0); 248424d5174aSHong Zhang } 24852798e883SHong Zhang 24862798e883SHong Zhang #undef __FUNCT__ 24872798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24881302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24892798e883SHong Zhang { 24902798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2491dfbe8321SBarry Smith PetscErrorCode ierr; 2492899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2493efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2494ffe4fb16SHong Zhang Vec bb1; 2495ffe4fb16SHong Zhang 2496ffe4fb16SHong Zhang PetscFunctionBegin; 249777431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2498ffe4fb16SHong Zhang if (bs > 1) 2499ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2500ffe4fb16SHong Zhang 2501ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2502ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2503ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2504ffe4fb16SHong Zhang its--; 2505ffe4fb16SHong Zhang } 2506ffe4fb16SHong Zhang 2507ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2508ffe4fb16SHong Zhang while (its--){ 2509ffe4fb16SHong Zhang 2510ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2511ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2512ffe4fb16SHong Zhang 2513ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25141ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25151ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2516ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25171ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2518ffe4fb16SHong Zhang 2519efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2520ffe4fb16SHong Zhang 2521ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25221ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25231ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2524ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25251ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2526ffe4fb16SHong Zhang 2527ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25282dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2529ffe4fb16SHong Zhang 2530ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25311ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25321ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2533ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2534ffe4fb16SHong Zhang 2535ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2536ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang 2538ffe4fb16SHong Zhang /* local diagonal sweep */ 2539ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2540ffe4fb16SHong Zhang } 2541ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2542ffe4fb16SHong Zhang } else { 2543ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2544ffe4fb16SHong Zhang } 2545ffe4fb16SHong Zhang PetscFunctionReturn(0); 2546ffe4fb16SHong Zhang } 2547ffe4fb16SHong Zhang 2548ffe4fb16SHong Zhang #undef __FUNCT__ 2549ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25501302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2551ffe4fb16SHong Zhang { 2552ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2553dfbe8321SBarry Smith PetscErrorCode ierr; 25542798e883SHong Zhang Vec lvec1,bb1; 25552798e883SHong Zhang 25562798e883SHong Zhang PetscFunctionBegin; 255777431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2558899cda47SBarry Smith if (matin->rmap.bs > 1) 25592798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25602798e883SHong Zhang 2561c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25622798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2563bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25642798e883SHong Zhang its--; 25652798e883SHong Zhang } 25662798e883SHong Zhang 25672798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25682798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25692798e883SHong Zhang while (its--){ 2570ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25712798e883SHong Zhang 25722798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25732798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2574efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25752798e883SHong Zhang 2576ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25772798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2578ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25792798e883SHong Zhang 25802798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2581efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25822798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25832798e883SHong Zhang 2584ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25852798e883SHong Zhang 2586c14dc6b6SHong Zhang /* diagonal sweep */ 2587bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25882798e883SHong Zhang } 25892798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25902798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2591c14dc6b6SHong Zhang } else { 2592c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2593c14dc6b6SHong Zhang } 25942798e883SHong Zhang PetscFunctionReturn(0); 25952798e883SHong Zhang } 25962798e883SHong Zhang 2597