xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision e5e170da3bb86aff724798386faa448d1c622a0f)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define CHUNKSIZE  10
55a30f8f8cSSatish Balay 
56a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
57a30f8f8cSSatish Balay { \
58a30f8f8cSSatish Balay  \
59a30f8f8cSSatish Balay     brow = row/bs;  \
60a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
61a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
62a30f8f8cSSatish Balay       bcol = col/bs; \
63a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
64a30f8f8cSSatish Balay       low = 0; high = nrow; \
65a30f8f8cSSatish Balay       while (high-low > 3) { \
66a30f8f8cSSatish Balay         t = (low+high)/2; \
67a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
68a30f8f8cSSatish Balay         else              low  = t; \
69a30f8f8cSSatish Balay       } \
70a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
71a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
72a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
73a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
74a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
75a30f8f8cSSatish Balay           else                    *bap  = value;  \
76a30f8f8cSSatish Balay           goto a_noinsert; \
77a30f8f8cSSatish Balay         } \
78a30f8f8cSSatish Balay       } \
79a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
80085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
81421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
82a30f8f8cSSatish Balay       N = nrow++ - 1;  \
83a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
84a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
85a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
86a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
87a30f8f8cSSatish Balay       } \
88a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
89a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
90a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
91a30f8f8cSSatish Balay       a_noinsert:; \
92a30f8f8cSSatish Balay     ailen[brow] = nrow; \
93a30f8f8cSSatish Balay }
94*e5e170daSBarry Smith 
95a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
96a30f8f8cSSatish Balay { \
97a30f8f8cSSatish Balay     brow = row/bs;  \
98a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
99a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
100a30f8f8cSSatish Balay       bcol = col/bs; \
101a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
102a30f8f8cSSatish Balay       low = 0; high = nrow; \
103a30f8f8cSSatish Balay       while (high-low > 3) { \
104a30f8f8cSSatish Balay         t = (low+high)/2; \
105a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
106a30f8f8cSSatish Balay         else              low  = t; \
107a30f8f8cSSatish Balay       } \
108a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
109a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
110a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
111a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
112a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
113a30f8f8cSSatish Balay           else                    *bap  = value;  \
114a30f8f8cSSatish Balay           goto b_noinsert; \
115a30f8f8cSSatish Balay         } \
116a30f8f8cSSatish Balay       } \
117a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
118085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
119421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
120a30f8f8cSSatish Balay       N = nrow++ - 1;  \
121a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
122a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
123a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
125a30f8f8cSSatish Balay       } \
126a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
127a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
128a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
129a30f8f8cSSatish Balay       b_noinsert:; \
130a30f8f8cSSatish Balay     bilen[brow] = nrow; \
131a30f8f8cSSatish Balay }
132a30f8f8cSSatish Balay 
133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
134a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
135a30f8f8cSSatish Balay */
1364a2ae208SSatish Balay #undef __FUNCT__
137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
139a30f8f8cSSatish Balay {
140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
141a30f8f8cSSatish Balay   MatScalar      value;
142b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1441302d50aSBarry Smith   PetscInt       i,j,row,col;
145899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
146899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
147899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
148a30f8f8cSSatish Balay 
149a30f8f8cSSatish Balay   /* Some Variables required in the macro */
150a30f8f8cSSatish Balay   Mat            A = baij->A;
151a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1521302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
153a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay   Mat            B = baij->B;
156a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1571302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
158a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
159a30f8f8cSSatish Balay 
1601302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1611302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
162a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   /* for stash */
165910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
166910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
167a30f8f8cSSatish Balay 
168a30f8f8cSSatish Balay   PetscFunctionBegin;
169a30f8f8cSSatish Balay 
170a30f8f8cSSatish Balay   if (!baij->donotstash){
17159ffdab8SBarry Smith     if (n > baij->n_loc) {
17259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       baij->n_loc = n;
17759ffdab8SBarry Smith     }
17859ffdab8SBarry Smith     in_loc = baij->in_loc;
17959ffdab8SBarry Smith     v_loc  = baij->v_loc;
180a30f8f8cSSatish Balay   }
181a30f8f8cSSatish Balay 
182a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
183a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
185899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
186a30f8f8cSSatish Balay #endif
187a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
188a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
189a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19001b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19101b2bd88SHong Zhang           if (a->ignore_ltriangular){
19201b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19301b2bd88SHong Zhang           } else {
1944e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19501b2bd88SHong Zhang           }
19601b2bd88SHong Zhang         }
197a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
198a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
199a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
200a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
201a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
202a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
203a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
204a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
206899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
207a30f8f8cSSatish Balay #endif
208a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
209a30f8f8cSSatish Balay           if (mat->was_assembled) {
210a30f8f8cSSatish Balay             if (!baij->colmap) {
211653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212a30f8f8cSSatish Balay             }
213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
214a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21571730473SSatish Balay             col  = col - 1;
216a30f8f8cSSatish Balay #else
21771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
218a30f8f8cSSatish Balay #endif
219a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
220a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
221a30f8f8cSSatish Balay               col =  in[j];
222a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
223a30f8f8cSSatish Balay               B = baij->B;
224a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
225a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
226a30f8f8cSSatish Balay               ba=b->a;
22771730473SSatish Balay             } else col += in[j]%bs;
228a30f8f8cSSatish Balay           } else col = in[j];
229a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
2610880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
2860880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2870880e062SHong Zhang         if ((roworiented) && (n == 1)) {
288f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2890880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
290f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2910880e062SHong Zhang         } else { /* Here a copy is required */
2920880e062SHong Zhang           if (roworiented) {
2930880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2940880e062SHong Zhang           } else {
2950880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2960880e062SHong Zhang           }
2970880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2980880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2990880e062SHong Zhang               *barray++  = *value++;
3000880e062SHong Zhang             }
3010880e062SHong Zhang           }
3020880e062SHong Zhang           barray -=bs2;
3030880e062SHong Zhang         }
3040880e062SHong Zhang 
3050880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3060880e062SHong Zhang           col  = in[j] - cstart;
3070880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3080880e062SHong Zhang         }
3090880e062SHong Zhang         else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3230880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
3260880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3300880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3360880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col =  in[j];
3380880e062SHong Zhang             }
3390880e062SHong Zhang           }
3400880e062SHong Zhang           else col = in[j];
341e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3420880e062SHong Zhang         }
3430880e062SHong Zhang       }
3440880e062SHong Zhang     } else {
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
364899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
36897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
376a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data --;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     } else {
39629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
397a30f8f8cSSatish Balay     }
398a30f8f8cSSatish Balay   }
399a30f8f8cSSatish Balay  PetscFunctionReturn(0);
400a30f8f8cSSatish Balay }
401a30f8f8cSSatish Balay 
4024a2ae208SSatish Balay #undef __FUNCT__
4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
405a30f8f8cSSatish Balay {
406a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
407dfbe8321SBarry Smith   PetscErrorCode ierr;
408a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
409a30f8f8cSSatish Balay 
410a30f8f8cSSatish Balay   PetscFunctionBegin;
411a30f8f8cSSatish Balay   if (baij->size == 1) {
412a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
413a30f8f8cSSatish Balay   } else {
414a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
415f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
416a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
418a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4207adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
422a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4230b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4240b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4250b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4260b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
427899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
428899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
4290b8dc8d2SHong Zhang       MatScalar    *v;
4300b8dc8d2SHong Zhang 
431899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
432899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
433899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4430b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4600b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
4677adad957SLisandro Dalcin       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
4720b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
473a30f8f8cSSatish Balay     } else {
47429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
475a30f8f8cSSatish Balay     }
476a30f8f8cSSatish Balay   }
477a30f8f8cSSatish Balay   PetscFunctionReturn(0);
478a30f8f8cSSatish Balay }
479a30f8f8cSSatish Balay 
4804a2ae208SSatish Balay #undef __FUNCT__
4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
483a30f8f8cSSatish Balay {
484a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
485dfbe8321SBarry Smith   PetscErrorCode ierr;
4861302d50aSBarry Smith   PetscInt       nstash,reallocs;
487a30f8f8cSSatish Balay   InsertMode     addv;
488a30f8f8cSSatish Balay 
489a30f8f8cSSatish Balay   PetscFunctionBegin;
490a30f8f8cSSatish Balay   if (baij->donotstash) {
491a30f8f8cSSatish Balay     PetscFunctionReturn(0);
492a30f8f8cSSatish Balay   }
493a30f8f8cSSatish Balay 
494a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4957adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
496a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
49729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
498a30f8f8cSSatish Balay   }
499a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
500a30f8f8cSSatish Balay 
5011e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr);
5021e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
503a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   PetscFunctionReturn(0);
508a30f8f8cSSatish Balay }
509a30f8f8cSSatish Balay 
5104a2ae208SSatish Balay #undef __FUNCT__
5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
513a30f8f8cSSatish Balay {
514a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
515a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5166849ba73SBarry Smith   PetscErrorCode ierr;
51713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
518e44c0bd4SBarry Smith   PetscInt       *row,*col;
519e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52013f74950SBarry Smith   PetscMPIInt    n;
521a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
522a30f8f8cSSatish Balay   MatScalar      *val;
523a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
524a30f8f8cSSatish Balay 
52591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
526a30f8f8cSSatish Balay   PetscFunctionBegin;
527a30f8f8cSSatish Balay 
528a30f8f8cSSatish Balay   if (!baij->donotstash) {
529a30f8f8cSSatish Balay     while (1) {
530a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
531a30f8f8cSSatish Balay       if (!flg) break;
532a30f8f8cSSatish Balay 
533a30f8f8cSSatish Balay       for (i=0; i<n;) {
534a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
535a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
536a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
537a30f8f8cSSatish Balay         else       ncols = n-i;
538a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
539dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
540a30f8f8cSSatish Balay         i = j;
541a30f8f8cSSatish Balay       }
542a30f8f8cSSatish Balay     }
543a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
545a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
546a30f8f8cSSatish Balay        restore the original flags */
547a30f8f8cSSatish Balay     r1 = baij->roworiented;
548a30f8f8cSSatish Balay     r2 = a->roworiented;
54991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
550a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
551a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
553a30f8f8cSSatish Balay     while (1) {
554a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       if (!flg) break;
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay       for (i=0; i<n;) {
558a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
559a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
560a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
561a30f8f8cSSatish Balay         else       ncols = n-i;
562dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
563a30f8f8cSSatish Balay         i = j;
564a30f8f8cSSatish Balay       }
565a30f8f8cSSatish Balay     }
566a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay 
572a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay 
575a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
576a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
577a30f8f8cSSatish Balay   /*
578a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
579a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
580a30f8f8cSSatish Balay   */
581a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5827adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
584c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     }
586a30f8f8cSSatish Balay   }
587a30f8f8cSSatish Balay 
588a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
590a30f8f8cSSatish Balay   }
59191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
595a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   baij->rowvalues = 0;
5975222a1afSHong Zhang 
598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
599a30f8f8cSSatish Balay }
600a30f8f8cSSatish Balay 
601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6024a2ae208SSatish Balay #undef __FUNCT__
6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
605a30f8f8cSSatish Balay {
606a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
607dfbe8321SBarry Smith   PetscErrorCode    ierr;
608899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6091302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
611b0a32e0cSBarry Smith   PetscViewer       sviewer;
612f3ef73ceSBarry Smith   PetscViewerFormat format;
613a30f8f8cSSatish Balay 
614a30f8f8cSSatish Balay   PetscFunctionBegin;
61532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
616fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61732077d6dSBarry Smith   if (iascii) {
618b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
619456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
620a30f8f8cSSatish Balay       MatInfo info;
6217adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
624899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
625899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       PetscFunctionReturn(0);
634fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
638c1490034SHong Zhang       PetscFunctionReturn(0);
639a30f8f8cSSatish Balay     }
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   if (isdraw) {
643b0a32e0cSBarry Smith     PetscDraw  draw;
644a30f8f8cSSatish Balay     PetscTruth isnull;
645b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
646b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   if (size == 1) {
6507adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
652a30f8f8cSSatish Balay   } else {
653a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
654a30f8f8cSSatish Balay     Mat          A;
65565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
657899cda47SBarry Smith     PetscInt     M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
658a30f8f8cSSatish Balay     MatScalar    *a;
659a30f8f8cSSatish Balay 
660f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6617adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
662a30f8f8cSSatish Balay     if (!rank) {
663f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     } else {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     }
667f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
668899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay     /* copy over the A part */
67265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
673a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6741302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
677e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
678a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
679a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
680e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
681a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
682dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
683a30f8f8cSSatish Balay           col++; a += bs;
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686a30f8f8cSSatish Balay     }
687a30f8f8cSSatish Balay     /* copy over the B part */
68865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
690a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
691e9f7bc9eSHong Zhang 
692e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
693a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
694a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
695a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
696a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
697799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
698a30f8f8cSSatish Balay           col++; a += bs;
699a30f8f8cSSatish Balay         }
700a30f8f8cSSatish Balay       }
701a30f8f8cSSatish Balay     }
702a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     /*
706a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
707b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
708a30f8f8cSSatish Balay     */
709b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71065d70643SHong Zhang     if (!rank) {
7117adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
712a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     }
714b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay   PetscFunctionReturn(0);
718a30f8f8cSSatish Balay }
719a30f8f8cSSatish Balay 
7204a2ae208SSatish Balay #undef __FUNCT__
7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
723a30f8f8cSSatish Balay {
724dfbe8321SBarry Smith   PetscErrorCode ierr;
72532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
726a30f8f8cSSatish Balay 
727a30f8f8cSSatish Balay   PetscFunctionBegin;
72832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
729fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
730b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
731fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
733a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
734a30f8f8cSSatish Balay   } else {
7351302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
736a30f8f8cSSatish Balay   }
737a30f8f8cSSatish Balay   PetscFunctionReturn(0);
738a30f8f8cSSatish Balay }
739a30f8f8cSSatish Balay 
7404a2ae208SSatish Balay #undef __FUNCT__
7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
743a30f8f8cSSatish Balay {
744a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay   PetscFunctionBegin;
748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
749899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
750a30f8f8cSSatish Balay #endif
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7569c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
757a30f8f8cSSatish Balay #else
75805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #endif
76005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
761a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
762a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76340781036SHong Zhang   if (baij->slvec0) {
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76640781036SHong Zhang   }
76740781036SHong Zhang   if (baij->slvec1) {
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77140781036SHong Zhang   }
77240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
77305b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
776a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
77705b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
778a30f8f8cSSatish Balay #endif
77959ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78059ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
781899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
782a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
783901853e0SKris Buschelman 
784dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
785901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
786901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
787901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
789a30f8f8cSSatish Balay   PetscFunctionReturn(0);
790a30f8f8cSSatish Balay }
791a30f8f8cSSatish Balay 
7924a2ae208SSatish Balay #undef __FUNCT__
793a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
794dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
795a9d4b620SHong Zhang {
796a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
797dfbe8321SBarry Smith   PetscErrorCode ierr;
798899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
799a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
800a9d4b620SHong Zhang 
801a9d4b620SHong Zhang   PetscFunctionBegin;
802a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
803899cda47SBarry Smith   if (nt != A->cmap.n) {
804a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
805a9d4b620SHong Zhang   }
806a9d4b620SHong Zhang 
807a9d4b620SHong Zhang   /* diagonal part */
808a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8092dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
810a9d4b620SHong Zhang 
811a9d4b620SHong Zhang   /* subdiagonal part */
812a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
813fc165ae2SBarry Smith 
814a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8151ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8161ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
817a9d4b620SHong Zhang 
818fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
819fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8201ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
821fc165ae2SBarry Smith 
822fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
823ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
824a9d4b620SHong Zhang   /* supperdiagonal part */
825a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
826a9d4b620SHong Zhang   PetscFunctionReturn(0);
827a9d4b620SHong Zhang }
828a9d4b620SHong Zhang 
829a9d4b620SHong Zhang #undef __FUNCT__
83040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
831dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
832a30f8f8cSSatish Balay {
833a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
834dfbe8321SBarry Smith   PetscErrorCode ierr;
8351302d50aSBarry Smith   PetscInt       nt;
836a30f8f8cSSatish Balay 
837a30f8f8cSSatish Balay   PetscFunctionBegin;
838a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
839899cda47SBarry Smith   if (nt != A->cmap.n) {
84029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
841a30f8f8cSSatish Balay   }
842a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
843899cda47SBarry Smith   if (nt != A->rmap.N) {
84429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
845a30f8f8cSSatish Balay   }
84665d70643SHong Zhang 
847ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
848b941877fSHong Zhang   /* do diagonal part */
849b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
850b941877fSHong Zhang   /* do supperdiagonal part */
851ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
852b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
853b941877fSHong Zhang   /* do subdiagonal part */
854b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
855ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
856ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
85765d70643SHong Zhang 
858a30f8f8cSSatish Balay   PetscFunctionReturn(0);
859a30f8f8cSSatish Balay }
860a30f8f8cSSatish Balay 
8614a2ae208SSatish Balay #undef __FUNCT__
8624a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
863dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
864a30f8f8cSSatish Balay {
865de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
866dfbe8321SBarry Smith   PetscErrorCode ierr;
867899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
868a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
869a9d4b620SHong Zhang 
870a9d4b620SHong Zhang   PetscFunctionBegin;
871a9d4b620SHong Zhang   /*
8727adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
8737adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
874a9d4b620SHong Zhang   */
875a9d4b620SHong Zhang   /* diagonal part */
876a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
8772dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
878a9d4b620SHong Zhang 
879a9d4b620SHong Zhang   /* subdiagonal part */
880a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
881a9d4b620SHong Zhang 
882a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8831ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8841ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
885a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
8861ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
887a9d4b620SHong Zhang 
888ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8891ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
890ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
891a9d4b620SHong Zhang 
892a9d4b620SHong Zhang   /* supperdiagonal part */
893a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
894a9d4b620SHong Zhang 
895a9d4b620SHong Zhang   PetscFunctionReturn(0);
896a9d4b620SHong Zhang }
897a9d4b620SHong Zhang 
898a9d4b620SHong Zhang #undef __FUNCT__
899a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
900dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
901a9d4b620SHong Zhang {
902a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
903dfbe8321SBarry Smith   PetscErrorCode ierr;
904a30f8f8cSSatish Balay 
905a30f8f8cSSatish Balay   PetscFunctionBegin;
906ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
907b941877fSHong Zhang   /* do diagonal part */
908b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
909b941877fSHong Zhang   /* do supperdiagonal part */
910ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
911de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
912de8b6608SHong Zhang 
913b941877fSHong Zhang   /* do subdiagonal part */
914a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
915ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
916ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
917aa482183SHong Zhang 
918a30f8f8cSSatish Balay   PetscFunctionReturn(0);
919a30f8f8cSSatish Balay }
920a30f8f8cSSatish Balay 
921a30f8f8cSSatish Balay /*
922a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
923a30f8f8cSSatish Balay    diagonal block
924a30f8f8cSSatish Balay */
9254a2ae208SSatish Balay #undef __FUNCT__
9264a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
927dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
928a30f8f8cSSatish Balay {
929a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
930dfbe8321SBarry Smith   PetscErrorCode ierr;
931a30f8f8cSSatish Balay 
932a30f8f8cSSatish Balay   PetscFunctionBegin;
933899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
934a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
935a30f8f8cSSatish Balay   PetscFunctionReturn(0);
936a30f8f8cSSatish Balay }
937a30f8f8cSSatish Balay 
9384a2ae208SSatish Balay #undef __FUNCT__
9394a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
940f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
941a30f8f8cSSatish Balay {
942a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
943dfbe8321SBarry Smith   PetscErrorCode ierr;
944a30f8f8cSSatish Balay 
945a30f8f8cSSatish Balay   PetscFunctionBegin;
946f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
947f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
948a30f8f8cSSatish Balay   PetscFunctionReturn(0);
949a30f8f8cSSatish Balay }
950a30f8f8cSSatish Balay 
9514a2ae208SSatish Balay #undef __FUNCT__
9524a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9531302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
954a30f8f8cSSatish Balay {
955d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
956d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
957d0d4cfc2SHong Zhang   PetscErrorCode ierr;
958899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
959899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
960899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
961d0d4cfc2SHong Zhang 
962a30f8f8cSSatish Balay   PetscFunctionBegin;
963d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
964d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
965d0d4cfc2SHong Zhang 
966d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
967d0d4cfc2SHong Zhang     /*
968d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
969d0d4cfc2SHong Zhang     */
970d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
971d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
972d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
973d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
974d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
975d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
976d0d4cfc2SHong Zhang     }
977d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
978d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
979d0d4cfc2SHong Zhang   }
980d0d4cfc2SHong Zhang 
981d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
982d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
983d0d4cfc2SHong Zhang 
984d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
985d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
986d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
987d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
988d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
989d0d4cfc2SHong Zhang   nztot = nzA + nzB;
990d0d4cfc2SHong Zhang 
991d0d4cfc2SHong Zhang   cmap  = mat->garray;
992d0d4cfc2SHong Zhang   if (v  || idx) {
993d0d4cfc2SHong Zhang     if (nztot) {
994d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
995d0d4cfc2SHong Zhang       PetscInt imark = -1;
996d0d4cfc2SHong Zhang       if (v) {
997d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
998d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
999d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1000d0d4cfc2SHong Zhang           else break;
1001d0d4cfc2SHong Zhang         }
1002d0d4cfc2SHong Zhang         imark = i;
1003d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1004d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1005d0d4cfc2SHong Zhang       }
1006d0d4cfc2SHong Zhang       if (idx) {
1007d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1008d0d4cfc2SHong Zhang         if (imark > -1) {
1009d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1010d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1011d0d4cfc2SHong Zhang           }
1012d0d4cfc2SHong Zhang         } else {
1013d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1014d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1015d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1016d0d4cfc2SHong Zhang             else break;
1017d0d4cfc2SHong Zhang           }
1018d0d4cfc2SHong Zhang           imark = i;
1019d0d4cfc2SHong Zhang         }
1020d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1021d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1022d0d4cfc2SHong Zhang       }
1023d0d4cfc2SHong Zhang     } else {
1024d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1025d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1026d0d4cfc2SHong Zhang     }
1027d0d4cfc2SHong Zhang   }
1028d0d4cfc2SHong Zhang   *nz = nztot;
1029d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1030d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1031a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1032a30f8f8cSSatish Balay }
1033a30f8f8cSSatish Balay 
10344a2ae208SSatish Balay #undef __FUNCT__
10354a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10361302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1037a30f8f8cSSatish Balay {
1038a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1039a30f8f8cSSatish Balay 
1040a30f8f8cSSatish Balay   PetscFunctionBegin;
1041abc0a331SBarry Smith   if (!baij->getrowactive) {
1042abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1043a30f8f8cSSatish Balay   }
1044a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1045a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1046a30f8f8cSSatish Balay }
1047a30f8f8cSSatish Balay 
10484a2ae208SSatish Balay #undef __FUNCT__
1049d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1050d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1051d0d4cfc2SHong Zhang {
1052d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1053d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1054d0d4cfc2SHong Zhang 
1055d0d4cfc2SHong Zhang   PetscFunctionBegin;
1056d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1057d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1058d0d4cfc2SHong Zhang }
1059d0d4cfc2SHong Zhang #undef __FUNCT__
1060d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1061d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1062d0d4cfc2SHong Zhang {
1063d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1064d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1065d0d4cfc2SHong Zhang 
1066d0d4cfc2SHong Zhang   PetscFunctionBegin;
1067d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1068d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1069d0d4cfc2SHong Zhang }
1070d0d4cfc2SHong Zhang 
1071d0d4cfc2SHong Zhang #undef __FUNCT__
107299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
107399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
107499cafbc1SBarry Smith {
107599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
107699cafbc1SBarry Smith   PetscErrorCode ierr;
107799cafbc1SBarry Smith 
107899cafbc1SBarry Smith   PetscFunctionBegin;
107999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
108099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
108199cafbc1SBarry Smith   PetscFunctionReturn(0);
108299cafbc1SBarry Smith }
108399cafbc1SBarry Smith 
108499cafbc1SBarry Smith #undef __FUNCT__
108599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
108699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
108799cafbc1SBarry Smith {
108899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
108999cafbc1SBarry Smith   PetscErrorCode ierr;
109099cafbc1SBarry Smith 
109199cafbc1SBarry Smith   PetscFunctionBegin;
109299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
109399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
109499cafbc1SBarry Smith   PetscFunctionReturn(0);
109599cafbc1SBarry Smith }
109699cafbc1SBarry Smith 
109799cafbc1SBarry Smith #undef __FUNCT__
10984a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1099dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1100a30f8f8cSSatish Balay {
1101a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1102dfbe8321SBarry Smith   PetscErrorCode ierr;
1103a30f8f8cSSatish Balay 
1104a30f8f8cSSatish Balay   PetscFunctionBegin;
1105a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1106a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1107a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1108a30f8f8cSSatish Balay }
1109a30f8f8cSSatish Balay 
11104a2ae208SSatish Balay #undef __FUNCT__
11114a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1112dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1113a30f8f8cSSatish Balay {
1114a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1115a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1116dfbe8321SBarry Smith   PetscErrorCode ierr;
1117a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1118a30f8f8cSSatish Balay 
1119a30f8f8cSSatish Balay   PetscFunctionBegin;
1120899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1121a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1122a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1123a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1124a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1125a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1126a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1127a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1128a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1129a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1130a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1131a30f8f8cSSatish Balay     info->memory       = isend[3];
1132a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1133a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11347adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1135a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1136a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1137a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1138a30f8f8cSSatish Balay     info->memory       = irecv[3];
1139a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1140a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11417adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1142a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1143a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1144a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1145a30f8f8cSSatish Balay     info->memory       = irecv[3];
1146a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1147a30f8f8cSSatish Balay   } else {
114877431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1149a30f8f8cSSatish Balay   }
1150899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1151899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1152899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1153899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1154a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1155a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1156a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1157a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1158a30f8f8cSSatish Balay }
1159a30f8f8cSSatish Balay 
11604a2ae208SSatish Balay #undef __FUNCT__
11614a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11624e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1163a30f8f8cSSatish Balay {
1164a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1165d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1166dfbe8321SBarry Smith   PetscErrorCode ierr;
1167a30f8f8cSSatish Balay 
1168a30f8f8cSSatish Balay   PetscFunctionBegin;
1169e98b92d7SKris Buschelman   switch (op) {
1170512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1171e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1172e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1173e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
11744e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11754e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1176e98b92d7SKris Buschelman     break;
1177e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
11784e0d8c25SBarry Smith     a->roworiented = flg;
11794e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11804e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1181e98b92d7SKris Buschelman     break;
11824e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1183290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1184e98b92d7SKris Buschelman     break;
1185e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
11864e0d8c25SBarry Smith     a->donotstash = flg;
1187e98b92d7SKris Buschelman     break;
1188e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
11894e0d8c25SBarry Smith     a->ht_flag = flg;
1190e98b92d7SKris Buschelman     break;
11919a4540c5SBarry Smith   case MAT_HERMITIAN:
11924e0d8c25SBarry Smith     if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
119377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
119477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
11959a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
11964e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1197290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
119877e54ba9SKris Buschelman     break;
1199d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12004e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1201d0d4cfc2SHong Zhang     break;
1202d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12034e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1204d0d4cfc2SHong Zhang     break;
1205d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12064e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1207d0d4cfc2SHong Zhang     break;
1208e98b92d7SKris Buschelman   default:
1209ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1210a30f8f8cSSatish Balay   }
1211a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1212a30f8f8cSSatish Balay }
1213a30f8f8cSSatish Balay 
12144a2ae208SSatish Balay #undef __FUNCT__
12158115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1216dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1217a30f8f8cSSatish Balay {
1218dfbe8321SBarry Smith   PetscErrorCode ierr;
1219a30f8f8cSSatish Balay   PetscFunctionBegin;
1220999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
12218115998fSBarry Smith   PetscFunctionReturn(0);
1222a30f8f8cSSatish Balay }
1223a30f8f8cSSatish Balay 
12244a2ae208SSatish Balay #undef __FUNCT__
12254a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1226dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1227a30f8f8cSSatish Balay {
1228a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1229a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1230dfbe8321SBarry Smith   PetscErrorCode ierr;
12315e90f9d9SHong Zhang   PetscInt       nv,m,n;
1232b3bf805bSHong Zhang   PetscTruth     flg;
1233a30f8f8cSSatish Balay 
1234a30f8f8cSSatish Balay   PetscFunctionBegin;
1235a30f8f8cSSatish Balay   if (ll != rr){
1236b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1237b3bf805bSHong Zhang     if (!flg)
123829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1239a30f8f8cSSatish Balay   }
1240b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1241b3bf805bSHong Zhang 
12425e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12435e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1244b3bf805bSHong Zhang 
12455e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12465e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12475e90f9d9SHong Zhang 
1248ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12495e90f9d9SHong Zhang 
12505e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1251a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12525e90f9d9SHong Zhang 
12535e90f9d9SHong Zhang   /* scale the diagonal part */
1254a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1255a30f8f8cSSatish Balay 
12565e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1257ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1258a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1259a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1260a30f8f8cSSatish Balay }
1261a30f8f8cSSatish Balay 
12624a2ae208SSatish Balay #undef __FUNCT__
12634a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1264dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1265a30f8f8cSSatish Balay {
1266f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1267dfbe8321SBarry Smith   PetscErrorCode ierr;
1268a30f8f8cSSatish Balay 
1269a30f8f8cSSatish Balay   PetscFunctionBegin;
1270a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1271a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1272a30f8f8cSSatish Balay }
1273a30f8f8cSSatish Balay 
12746849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1275a30f8f8cSSatish Balay 
12764a2ae208SSatish Balay #undef __FUNCT__
12774a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1278dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1279a30f8f8cSSatish Balay {
1280a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1281a30f8f8cSSatish Balay   Mat            a,b,c,d;
1282a30f8f8cSSatish Balay   PetscTruth     flg;
1283dfbe8321SBarry Smith   PetscErrorCode ierr;
1284a30f8f8cSSatish Balay 
1285a30f8f8cSSatish Balay   PetscFunctionBegin;
1286a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1287a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1288a30f8f8cSSatish Balay 
1289a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1290abc0a331SBarry Smith   if (flg) {
1291a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1292a30f8f8cSSatish Balay   }
12937adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1294a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1295a30f8f8cSSatish Balay }
1296a30f8f8cSSatish Balay 
12974a2ae208SSatish Balay #undef __FUNCT__
12983c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
12993c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13003c896bc6SHong Zhang {
13013c896bc6SHong Zhang   PetscErrorCode ierr;
13023c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13033c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13043c896bc6SHong Zhang 
13053c896bc6SHong Zhang   PetscFunctionBegin;
13063c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13073c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1308d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13093c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1310d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13113c896bc6SHong Zhang   } else {
13123c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13133c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13143c896bc6SHong Zhang   }
13153c896bc6SHong Zhang   PetscFunctionReturn(0);
13163c896bc6SHong Zhang }
13173c896bc6SHong Zhang 
13183c896bc6SHong Zhang #undef __FUNCT__
13194a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1320dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1321273d9f13SBarry Smith {
1322dfbe8321SBarry Smith   PetscErrorCode ierr;
1323273d9f13SBarry Smith 
1324273d9f13SBarry Smith   PetscFunctionBegin;
13257edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1326273d9f13SBarry Smith   PetscFunctionReturn(0);
1327273d9f13SBarry Smith }
1328a5e6ed63SBarry Smith 
13294fe895cdSHong Zhang #include "petscblaslapack.h"
13304fe895cdSHong Zhang #undef __FUNCT__
13314fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13324fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13334fe895cdSHong Zhang {
13344fe895cdSHong Zhang   PetscErrorCode ierr;
13354fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13364fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13374fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13384fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13394fe895cdSHong Zhang 
13404fe895cdSHong Zhang   PetscFunctionBegin;
13414fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13424fe895cdSHong Zhang     PetscScalar alpha = a;
13434fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13444fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13450805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13464fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13474fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13484fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13490805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13504fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13514fe895cdSHong Zhang   } else {
1352d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13534fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1354d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13554fe895cdSHong Zhang   }
13564fe895cdSHong Zhang   PetscFunctionReturn(0);
13574fe895cdSHong Zhang }
13584fe895cdSHong Zhang 
1359a5e6ed63SBarry Smith #undef __FUNCT__
1360a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
13611302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1362a5e6ed63SBarry Smith {
13636849ba73SBarry Smith   PetscErrorCode ierr;
13641302d50aSBarry Smith   PetscInt       i;
1365a5e6ed63SBarry Smith   PetscTruth     flg;
1366a5e6ed63SBarry Smith 
13676849ba73SBarry Smith   PetscFunctionBegin;
1368a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1369a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1370a5e6ed63SBarry Smith     if (!flg) {
13711302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1372a5e6ed63SBarry Smith     }
1373a5e6ed63SBarry Smith   }
1374a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1375a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1376a5e6ed63SBarry Smith }
1377a5e6ed63SBarry Smith 
1378a5e6ed63SBarry Smith 
1379a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1380a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1381a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1382a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1383a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1384a9d4b620SHong Zhang        MatMult_MPISBAIJ,
138597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1386431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1387431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1388a30f8f8cSSatish Balay        0,
1389a30f8f8cSSatish Balay        0,
1390a30f8f8cSSatish Balay        0,
139197304618SKris Buschelman /*10*/ 0,
1392a30f8f8cSSatish Balay        0,
1393a30f8f8cSSatish Balay        0,
13942798e883SHong Zhang        MatRelax_MPISBAIJ,
1395a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
139697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1397a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1398a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1399a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1400a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
140197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1402a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1403a30f8f8cSSatish Balay        0,
1404a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1405a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1406dcf5cc72SBarry Smith /*25*/ 0,
1407a30f8f8cSSatish Balay        0,
1408a30f8f8cSSatish Balay        0,
1409a30f8f8cSSatish Balay        0,
1410a30f8f8cSSatish Balay        0,
141197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1412b5df2d14SHong Zhang        0,
1413a30f8f8cSSatish Balay        0,
1414a30f8f8cSSatish Balay        0,
1415a30f8f8cSSatish Balay        0,
141697304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1417a30f8f8cSSatish Balay        0,
1418a30f8f8cSSatish Balay        0,
1419a30f8f8cSSatish Balay        0,
1420a30f8f8cSSatish Balay        0,
14214fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1422a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1423d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1424a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14253c896bc6SHong Zhang        MatCopy_MPISBAIJ,
14268c07d4e3SBarry Smith /*45*/ 0,
1427a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1428a30f8f8cSSatish Balay        0,
1429a30f8f8cSSatish Balay        0,
1430a30f8f8cSSatish Balay        0,
1431521d7252SBarry Smith /*50*/ 0,
1432a30f8f8cSSatish Balay        0,
1433a30f8f8cSSatish Balay        0,
1434a30f8f8cSSatish Balay        0,
1435a30f8f8cSSatish Balay        0,
143697304618SKris Buschelman /*55*/ 0,
1437a30f8f8cSSatish Balay        0,
1438a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1439a30f8f8cSSatish Balay        0,
1440a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
144197304618SKris Buschelman /*60*/ 0,
1442a30f8f8cSSatish Balay        0,
1443a30f8f8cSSatish Balay        0,
1444357abbc8SBarry Smith        0,
144524d5174aSHong Zhang        0,
144697304618SKris Buschelman /*65*/ 0,
144724d5174aSHong Zhang        0,
144824d5174aSHong Zhang        0,
144924d5174aSHong Zhang        0,
145024d5174aSHong Zhang        0,
1451985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ,
145224d5174aSHong Zhang        0,
145397304618SKris Buschelman        0,
145497304618SKris Buschelman        0,
145597304618SKris Buschelman        0,
145697304618SKris Buschelman /*75*/ 0,
145797304618SKris Buschelman        0,
145897304618SKris Buschelman        0,
145997304618SKris Buschelman        0,
146097304618SKris Buschelman        0,
146197304618SKris Buschelman /*80*/ 0,
146297304618SKris Buschelman        0,
146397304618SKris Buschelman        0,
146497304618SKris Buschelman        0,
1465865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1466865e5f61SKris Buschelman /*85*/ 0,
1467865e5f61SKris Buschelman        0,
1468865e5f61SKris Buschelman        0,
1469865e5f61SKris Buschelman        0,
1470865e5f61SKris Buschelman        0,
1471865e5f61SKris Buschelman /*90*/ 0,
1472865e5f61SKris Buschelman        0,
1473865e5f61SKris Buschelman        0,
1474865e5f61SKris Buschelman        0,
1475865e5f61SKris Buschelman        0,
1476865e5f61SKris Buschelman /*95*/ 0,
1477865e5f61SKris Buschelman        0,
1478865e5f61SKris Buschelman        0,
147999cafbc1SBarry Smith        0,
148099cafbc1SBarry Smith        0,
148199cafbc1SBarry Smith /*100*/0,
148299cafbc1SBarry Smith        0,
148399cafbc1SBarry Smith        0,
148499cafbc1SBarry Smith        0,
148599cafbc1SBarry Smith        0,
148699cafbc1SBarry Smith /*105*/0,
148799cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1488d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1489d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1490d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
149199cafbc1SBarry Smith };
1492a30f8f8cSSatish Balay 
1493a30f8f8cSSatish Balay 
1494a30f8f8cSSatish Balay EXTERN_C_BEGIN
14954a2ae208SSatish Balay #undef __FUNCT__
14964a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1497be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1498a30f8f8cSSatish Balay {
1499a30f8f8cSSatish Balay   PetscFunctionBegin;
1500a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1501a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1502a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1503a30f8f8cSSatish Balay }
1504a30f8f8cSSatish Balay EXTERN_C_END
1505a30f8f8cSSatish Balay 
1506273d9f13SBarry Smith EXTERN_C_BEGIN
15074a2ae208SSatish Balay #undef __FUNCT__
1508a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1509be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1510a23d5eceSKris Buschelman {
1511a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1512dfbe8321SBarry Smith   PetscErrorCode ierr;
15131302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1514a23d5eceSKris Buschelman 
1515a23d5eceSKris Buschelman   PetscFunctionBegin;
15167adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
15178c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
15188c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1519a23d5eceSKris Buschelman 
1520a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1521a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1522a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
152377431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
152477431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1525899cda47SBarry Smith 
1526899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
15276148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
15286148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
1529899cda47SBarry Smith 
1530a23d5eceSKris Buschelman   if (d_nnz) {
1531899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
153277431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1533a23d5eceSKris Buschelman     }
1534a23d5eceSKris Buschelman   }
1535a23d5eceSKris Buschelman   if (o_nnz) {
1536899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
153777431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1538a23d5eceSKris Buschelman     }
1539a23d5eceSKris Buschelman   }
1540a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1541a23d5eceSKris Buschelman 
1542a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1543899cda47SBarry Smith   mbs = B->rmap.n/bs;
1544899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1545899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1546899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1547a23d5eceSKris Buschelman   }
1548a23d5eceSKris Buschelman 
1549899cda47SBarry Smith   B->rmap.bs  = bs;
1550a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1551a23d5eceSKris Buschelman   b->mbs = mbs;
1552a23d5eceSKris Buschelman   b->nbs = mbs;
1553a23d5eceSKris Buschelman   b->Mbs = Mbs;
1554a23d5eceSKris Buschelman   b->Nbs = Mbs;
1555a23d5eceSKris Buschelman 
1556a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1557899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1558a23d5eceSKris Buschelman   }
1559899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1560899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1561a23d5eceSKris Buschelman 
1562899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1563899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1564a23d5eceSKris Buschelman 
1565f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1566899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
15679c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1568c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
156952e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
15709c097c71SKris Buschelman 
1571f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1572899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
15734aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1574589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
157552e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1576a23d5eceSKris Buschelman 
1577a23d5eceSKris Buschelman   /* build cache for off array entries formed */
15787adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1579a23d5eceSKris Buschelman 
1580a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1581a23d5eceSKris Buschelman }
1582a23d5eceSKris Buschelman EXTERN_C_END
1583a23d5eceSKris Buschelman 
15840bad9183SKris Buschelman /*MC
1585fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
15860bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15870bad9183SKris Buschelman 
15880bad9183SKris Buschelman    Options Database Keys:
15890bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
15900bad9183SKris Buschelman 
15910bad9183SKris Buschelman   Level: beginner
15920bad9183SKris Buschelman 
15930bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
15940bad9183SKris Buschelman M*/
15950bad9183SKris Buschelman 
1596a23d5eceSKris Buschelman EXTERN_C_BEGIN
1597a23d5eceSKris Buschelman #undef __FUNCT__
15984a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1599be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1600b5df2d14SHong Zhang {
1601b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1602dfbe8321SBarry Smith   PetscErrorCode ierr;
1603b5df2d14SHong Zhang   PetscTruth     flg;
1604b5df2d14SHong Zhang 
1605b5df2d14SHong Zhang   PetscFunctionBegin;
1606b5df2d14SHong Zhang 
160738f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1608b0a32e0cSBarry Smith   B->data = (void*)b;
1609b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1610b5df2d14SHong Zhang 
1611b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1612b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1613b5df2d14SHong Zhang   B->mapping    = 0;
1614b5df2d14SHong Zhang   B->factor     = 0;
1615b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1616b5df2d14SHong Zhang 
1617b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16187adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16197adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1620b5df2d14SHong Zhang 
1621b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1622899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1623b5df2d14SHong Zhang 
1624b5df2d14SHong Zhang   /* build cache for off array entries formed */
16257adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1626b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1627b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1628b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1629b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1630b5df2d14SHong Zhang 
1631b5df2d14SHong Zhang   /* stuff used in block assembly */
1632b5df2d14SHong Zhang   b->barray       = 0;
1633b5df2d14SHong Zhang 
1634b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1635b5df2d14SHong Zhang   b->lvec         = 0;
1636b5df2d14SHong Zhang   b->Mvctx        = 0;
163740781036SHong Zhang   b->slvec0       = 0;
163840781036SHong Zhang   b->slvec0b      = 0;
163940781036SHong Zhang   b->slvec1       = 0;
164040781036SHong Zhang   b->slvec1a      = 0;
164140781036SHong Zhang   b->slvec1b      = 0;
164240781036SHong Zhang   b->sMvctx       = 0;
1643b5df2d14SHong Zhang 
1644b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1645b5df2d14SHong Zhang   b->rowindices   = 0;
1646b5df2d14SHong Zhang   b->rowvalues    = 0;
1647b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1648b5df2d14SHong Zhang 
1649b5df2d14SHong Zhang   /* hash table stuff */
1650b5df2d14SHong Zhang   b->ht           = 0;
1651b5df2d14SHong Zhang   b->hd           = 0;
1652b5df2d14SHong Zhang   b->ht_size      = 0;
1653b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1654b5df2d14SHong Zhang   b->ht_fact      = 0;
1655b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1656b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1657b5df2d14SHong Zhang 
165859ffdab8SBarry Smith   b->in_loc       = 0;
165959ffdab8SBarry Smith   b->v_loc        = 0;
166059ffdab8SBarry Smith   b->n_loc        = 0;
16617adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
16628c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1663b5df2d14SHong Zhang     if (flg) {
1664f6275e2eSBarry Smith       PetscReal fact = 1.39;
16654e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
16668c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1667b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1668b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
16691e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1670b5df2d14SHong Zhang     }
16718c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
16728c07d4e3SBarry Smith 
1673b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1674b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1675b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1676b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1677b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1678b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1679b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1680b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1681b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1682a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1683a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1684a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
168523ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
168623ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
168723ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
168823ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
168917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1690b5df2d14SHong Zhang   PetscFunctionReturn(0);
1691b5df2d14SHong Zhang }
1692273d9f13SBarry Smith EXTERN_C_END
1693b5df2d14SHong Zhang 
1694209238afSKris Buschelman /*MC
1695002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1696209238afSKris Buschelman 
1697209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1698209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1699209238afSKris Buschelman 
1700209238afSKris Buschelman    Options Database Keys:
1701209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1702209238afSKris Buschelman 
1703209238afSKris Buschelman   Level: beginner
1704209238afSKris Buschelman 
1705209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1706209238afSKris Buschelman M*/
1707209238afSKris Buschelman 
1708209238afSKris Buschelman EXTERN_C_BEGIN
1709209238afSKris Buschelman #undef __FUNCT__
1710209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1711be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1712dfbe8321SBarry Smith {
17136849ba73SBarry Smith   PetscErrorCode ierr;
17141302d50aSBarry Smith   PetscMPIInt    size;
1715209238afSKris Buschelman 
1716209238afSKris Buschelman   PetscFunctionBegin;
17177adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1718209238afSKris Buschelman   if (size == 1) {
1719209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1720209238afSKris Buschelman   } else {
1721209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1722209238afSKris Buschelman   }
1723209238afSKris Buschelman   PetscFunctionReturn(0);
1724209238afSKris Buschelman }
1725209238afSKris Buschelman EXTERN_C_END
1726209238afSKris Buschelman 
17274a2ae208SSatish Balay #undef __FUNCT__
17284a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1729b5df2d14SHong Zhang /*@C
1730b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1731b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1732b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1733b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1734b5df2d14SHong Zhang 
1735b5df2d14SHong Zhang    Collective on Mat
1736b5df2d14SHong Zhang 
1737b5df2d14SHong Zhang    Input Parameters:
1738b5df2d14SHong Zhang +  A - the matrix
1739b5df2d14SHong Zhang .  bs   - size of blockk
1740b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1741b5df2d14SHong Zhang            submatrix  (same for all local rows)
1742b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17436d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17446d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17456d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1746b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1747b5df2d14SHong Zhang            submatrix (same for all local rows).
1748b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1749b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1750b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1751b5df2d14SHong Zhang 
1752b5df2d14SHong Zhang 
1753b5df2d14SHong Zhang    Options Database Keys:
1754b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1755b5df2d14SHong Zhang                      block calculations (much slower)
1756b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1757b5df2d14SHong Zhang 
1758b5df2d14SHong Zhang    Notes:
1759b5df2d14SHong Zhang 
1760b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1761b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1762b5df2d14SHong Zhang 
176349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
176449a6f317SBarry Smith 
1765b5df2d14SHong Zhang    Storage Information:
1766b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1767b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1768b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1769b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1770b5df2d14SHong Zhang 
1771b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1772b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1773b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1774b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1775b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1776b5df2d14SHong Zhang 
1777aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1778aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1779aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1780aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1781aa95bbe8SBarry Smith 
1782b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1783b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1784b5df2d14SHong Zhang 
1785b5df2d14SHong Zhang .vb
1786b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1787b5df2d14SHong Zhang           -------------------
1788b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1789b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1790b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1791b5df2d14SHong Zhang           -------------------
1792b5df2d14SHong Zhang .ve
1793b5df2d14SHong Zhang 
1794b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1795b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17966d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17976d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1798b5df2d14SHong Zhang 
17996d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18006d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1801b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1802b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1803b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1804b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1805b5df2d14SHong Zhang    matrices.
1806b5df2d14SHong Zhang 
1807b5df2d14SHong Zhang    Level: intermediate
1808b5df2d14SHong Zhang 
1809b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1810b5df2d14SHong Zhang 
1811b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1812b5df2d14SHong Zhang @*/
1813be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1814b5df2d14SHong Zhang {
18151302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1816b5df2d14SHong Zhang 
1817b5df2d14SHong Zhang   PetscFunctionBegin;
1818a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1819a23d5eceSKris Buschelman   if (f) {
1820a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1821b5df2d14SHong Zhang   }
1822b5df2d14SHong Zhang   PetscFunctionReturn(0);
1823b5df2d14SHong Zhang }
1824b5df2d14SHong Zhang 
18254a2ae208SSatish Balay #undef __FUNCT__
18264a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1827a30f8f8cSSatish Balay /*@C
1828a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1829a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1830a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1831a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1832a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1833a30f8f8cSSatish Balay 
1834a30f8f8cSSatish Balay    Collective on MPI_Comm
1835a30f8f8cSSatish Balay 
1836a30f8f8cSSatish Balay    Input Parameters:
1837a30f8f8cSSatish Balay +  comm - MPI communicator
1838a30f8f8cSSatish Balay .  bs   - size of blockk
1839a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1840a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1841a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1842a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1843a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1844a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1845a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1846a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1847a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1848a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1849a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18506d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18516d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18526d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1853a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1854a30f8f8cSSatish Balay            submatrix (same for all local rows).
1855a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1856a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1857a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1858a30f8f8cSSatish Balay 
1859a30f8f8cSSatish Balay    Output Parameter:
1860a30f8f8cSSatish Balay .  A - the matrix
1861a30f8f8cSSatish Balay 
1862a30f8f8cSSatish Balay    Options Database Keys:
1863a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1864a30f8f8cSSatish Balay                      block calculations (much slower)
1865a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1866a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1867a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1868a30f8f8cSSatish Balay 
1869175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1870175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
1871175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
1872175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1873175b88e8SBarry Smith 
1874a30f8f8cSSatish Balay    Notes:
1875d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
18766d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1877d1be2dadSMatthew Knepley 
1878a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1879a30f8f8cSSatish Balay    (possibly both).
1880a30f8f8cSSatish Balay 
1881a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1882a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1883a30f8f8cSSatish Balay 
188449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
188549a6f317SBarry Smith 
1886a30f8f8cSSatish Balay    Storage Information:
1887a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1888a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1889a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1890a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1891a30f8f8cSSatish Balay 
1892a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1893a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1894a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1895a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1896a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1897a30f8f8cSSatish Balay 
1898a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1899a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1900a30f8f8cSSatish Balay 
1901a30f8f8cSSatish Balay .vb
1902a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1903a30f8f8cSSatish Balay           -------------------
1904a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1905a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1906a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1907a30f8f8cSSatish Balay           -------------------
1908a30f8f8cSSatish Balay .ve
1909a30f8f8cSSatish Balay 
1910a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1911a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19126d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19136d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1914a30f8f8cSSatish Balay 
19156d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19166d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1917a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1918a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1919a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1920a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1921a30f8f8cSSatish Balay    matrices.
1922a30f8f8cSSatish Balay 
1923a30f8f8cSSatish Balay    Level: intermediate
1924a30f8f8cSSatish Balay 
1925a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1926a30f8f8cSSatish Balay 
1927a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1928a30f8f8cSSatish Balay @*/
1929a30f8f8cSSatish Balay 
1930be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1931a30f8f8cSSatish Balay {
19326849ba73SBarry Smith   PetscErrorCode ierr;
19331302d50aSBarry Smith   PetscMPIInt    size;
1934a30f8f8cSSatish Balay 
1935a30f8f8cSSatish Balay   PetscFunctionBegin;
1936f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1937f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1938273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1939273d9f13SBarry Smith   if (size > 1) {
1940b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1941b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1942273d9f13SBarry Smith   } else {
1943273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1944273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1945273d9f13SBarry Smith   }
1946a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1947a30f8f8cSSatish Balay }
1948a30f8f8cSSatish Balay 
1949a30f8f8cSSatish Balay 
19504a2ae208SSatish Balay #undef __FUNCT__
19514a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
19526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1953a30f8f8cSSatish Balay {
1954a30f8f8cSSatish Balay   Mat            mat;
1955a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1956dfbe8321SBarry Smith   PetscErrorCode ierr;
1957899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
1958387bc808SHong Zhang   PetscScalar    *array;
1959a30f8f8cSSatish Balay 
1960a30f8f8cSSatish Balay   PetscFunctionBegin;
1961a30f8f8cSSatish Balay   *newmat       = 0;
19627adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
1963899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
19647adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
19651d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
19667adad957SLisandro Dalcin   ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
19677adad957SLisandro Dalcin   ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
1968e1b6402fSHong Zhang 
196982327fa8SHong Zhang   mat->factor       = matin->factor;
1970273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
197182327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
19727fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
19737fff6886SHong Zhang 
1974b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1975a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
1976a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
1977a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
1978a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
1979a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
1980a30f8f8cSSatish Balay 
1981899cda47SBarry Smith 
1982a30f8f8cSSatish Balay   a->size         = oldmat->size;
1983a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1984a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1985a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1986a30f8f8cSSatish Balay   a->rowindices   = 0;
1987a30f8f8cSSatish Balay   a->rowvalues    = 0;
1988a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1989a30f8f8cSSatish Balay   a->barray       = 0;
1990899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
1991899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
1992899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
1993899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay   /* hash table stuff */
1996a30f8f8cSSatish Balay   a->ht           = 0;
1997a30f8f8cSSatish Balay   a->hd           = 0;
1998a30f8f8cSSatish Balay   a->ht_size      = 0;
1999a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2000a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2001a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2002a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2003a30f8f8cSSatish Balay 
2004899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
20057adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
20067adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2007a30f8f8cSSatish Balay   if (oldmat->colmap) {
2008a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2009a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2010a30f8f8cSSatish Balay #else
20111302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
201252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20131302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2014a30f8f8cSSatish Balay #endif
2015a30f8f8cSSatish Balay   } else a->colmap = 0;
2016387bc808SHong Zhang 
2017a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20181302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
201952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20201302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2021a30f8f8cSSatish Balay   } else a->garray = 0;
2022a30f8f8cSSatish Balay 
2023a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
202452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2025a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
202652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
202782327fa8SHong Zhang 
202882327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
202952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
203082327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
203152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2032387bc808SHong Zhang 
2033387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
20341ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2035387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2036387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
20371ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
20381ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2039387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
20401ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
204152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
204252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
204352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
204452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
204552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2046387bc808SHong Zhang 
2047387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2048387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2049387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
205052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
205182327fa8SHong Zhang 
2052a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
205352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2054a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
205552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
20567adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2057a30f8f8cSSatish Balay   *newmat = mat;
2058a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2059a30f8f8cSSatish Balay }
2060a30f8f8cSSatish Balay 
2061a30f8f8cSSatish Balay #include "petscsys.h"
2062a30f8f8cSSatish Balay 
20634a2ae208SSatish Balay #undef __FUNCT__
20644a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2065f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2066a30f8f8cSSatish Balay {
2067a30f8f8cSSatish Balay   Mat            A;
20686849ba73SBarry Smith   PetscErrorCode ierr;
206913f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
207087828ca2SBarry Smith   PetscScalar    *vals,*buf;
2071a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2072a30f8f8cSSatish Balay   MPI_Status     status;
2073e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
207413f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
20752fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
20761302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
20771302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
20781302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
207913f74950SBarry Smith   int            fd;
2080a30f8f8cSSatish Balay 
2081a30f8f8cSSatish Balay   PetscFunctionBegin;
208277925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
20838c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
20848c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2085a30f8f8cSSatish Balay 
2086a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2087a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2088a30f8f8cSSatish Balay   if (!rank) {
2089b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2090a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2091552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2092a30f8f8cSSatish Balay     if (header[3] < 0) {
209329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2094a30f8f8cSSatish Balay     }
2095a30f8f8cSSatish Balay   }
2096a30f8f8cSSatish Balay 
2097a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2098a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2099a30f8f8cSSatish Balay 
210029bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2101a30f8f8cSSatish Balay 
2102a30f8f8cSSatish Balay   /*
2103a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2104a30f8f8cSSatish Balay      divisible by the blocksize
2105a30f8f8cSSatish Balay   */
2106a30f8f8cSSatish Balay   Mbs        = M/bs;
2107a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2108a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2109a30f8f8cSSatish Balay   else                  Mbs++;
2110a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21111e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2112a30f8f8cSSatish Balay   }
2113a30f8f8cSSatish Balay 
2114a30f8f8cSSatish Balay   /* determine ownership of all rows */
2115a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2116a30f8f8cSSatish Balay   m          = mbs*bs;
2117a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2118a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2119e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2120e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2121a30f8f8cSSatish Balay   rowners[0] = 0;
2122a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2123a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2124a30f8f8cSSatish Balay   rstart = rowners[rank];
2125a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2126a30f8f8cSSatish Balay 
2127a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
21282fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2129a30f8f8cSSatish Balay   if (!rank) {
21301302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2131a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2132a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2133a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2134a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2135a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2136a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2137a30f8f8cSSatish Balay   } else {
2138a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2139a30f8f8cSSatish Balay   }
2140a30f8f8cSSatish Balay 
21410222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2142a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
21431302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
21441302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2145a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2146a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2147a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2148a30f8f8cSSatish Balay       }
2149a30f8f8cSSatish Balay     }
2150a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay 
2152a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2153a30f8f8cSSatish Balay     maxnz = 0;
2154a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2155a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2156a30f8f8cSSatish Balay     }
21571302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2158a30f8f8cSSatish Balay 
2159a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2160a30f8f8cSSatish Balay     nz     = procsnz[0];
21611302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2162a30f8f8cSSatish Balay     mycols = ibuf;
2163a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2164a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2165a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2166a30f8f8cSSatish Balay 
2167a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2168a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2169a30f8f8cSSatish Balay       nz   = procsnz[i];
2170a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2171a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2172a30f8f8cSSatish Balay     }
2173a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2174a30f8f8cSSatish Balay     if (size != 1) {
2175a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2176a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2178a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay     }
2180a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21810222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2182a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2183a30f8f8cSSatish Balay     nz = 0;
2184a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2185a30f8f8cSSatish Balay       nz += locrowlens[i];
2186a30f8f8cSSatish Balay     }
21871302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay     mycols = ibuf;
2189a30f8f8cSSatish Balay     /* receive message of column indices*/
2190a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2191a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
219229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2193a30f8f8cSSatish Balay   }
2194a30f8f8cSSatish Balay 
2195a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
21961302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2197a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
21981302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
21991302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2200a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2201a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2202a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2203a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2204a30f8f8cSSatish Balay     dcount  = 0;
2205a30f8f8cSSatish Balay     odcount = 0;
2206a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2207a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2208a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22090222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2210a30f8f8cSSatish Balay         if (!mask[tmp]) {
2211a30f8f8cSSatish Balay           mask[tmp] = 1;
22120222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22130222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2214a30f8f8cSSatish Balay         }
2215a30f8f8cSSatish Balay       }
2216a30f8f8cSSatish Balay       rowcount++;
2217a30f8f8cSSatish Balay     }
2218a30f8f8cSSatish Balay 
22190222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22200222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2221a30f8f8cSSatish Balay 
2222a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2223a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2224a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2225a30f8f8cSSatish Balay   }
2226a30f8f8cSSatish Balay 
2227a30f8f8cSSatish Balay   /* create our matrix */
2228f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2229f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
223022191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
223122191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay 
2233a30f8f8cSSatish Balay   if (!rank) {
223487828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2235a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2236a30f8f8cSSatish Balay     nz = procsnz[0];
2237a30f8f8cSSatish Balay     vals = buf;
2238a30f8f8cSSatish Balay     mycols = ibuf;
2239a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2240a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2241a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2242a30f8f8cSSatish Balay 
2243a30f8f8cSSatish Balay     /* insert into matrix */
2244a30f8f8cSSatish Balay     jj      = rstart*bs;
2245a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22467e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2247a30f8f8cSSatish Balay       mycols += locrowlens[i];
2248a30f8f8cSSatish Balay       vals   += locrowlens[i];
2249a30f8f8cSSatish Balay       jj++;
2250a30f8f8cSSatish Balay     }
22517e06b45fSHong Zhang 
2252a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2253a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2254a30f8f8cSSatish Balay       nz   = procsnz[i];
2255a30f8f8cSSatish Balay       vals = buf;
2256a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
22577adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay     }
2259a30f8f8cSSatish Balay     /* the last proc */
2260a30f8f8cSSatish Balay     if (size != 1){
2261a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2262a30f8f8cSSatish Balay       vals = buf;
2263a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2264a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
22657adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay     }
2267a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22687e06b45fSHong Zhang 
2269a30f8f8cSSatish Balay   } else {
2270a30f8f8cSSatish Balay     /* receive numeric values */
227187828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay 
2273a30f8f8cSSatish Balay     /* receive message of values*/
2274a30f8f8cSSatish Balay     vals   = buf;
2275a30f8f8cSSatish Balay     mycols = ibuf;
22767adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2277a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
227829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2279a30f8f8cSSatish Balay 
2280a30f8f8cSSatish Balay     /* insert into matrix */
2281a30f8f8cSSatish Balay     jj      = rstart*bs;
2282a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2283a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2284a30f8f8cSSatish Balay       mycols += locrowlens[i];
2285a30f8f8cSSatish Balay       vals   += locrowlens[i];
2286a30f8f8cSSatish Balay       jj++;
2287a30f8f8cSSatish Balay     }
2288a30f8f8cSSatish Balay   }
22897e06b45fSHong Zhang 
2290a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2291a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2292a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2293a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2294a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2295a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2296a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2297a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
229822191285SKris Buschelman   *newmat = A;
2299a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2300a30f8f8cSSatish Balay }
2301a30f8f8cSSatish Balay 
23024a2ae208SSatish Balay #undef __FUNCT__
23034a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2304dcf5cc72SBarry Smith /*XXXXX@
2305a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2306a30f8f8cSSatish Balay 
2307a30f8f8cSSatish Balay    Input Parameters:
2308a30f8f8cSSatish Balay .  mat  - the matrix
2309a30f8f8cSSatish Balay .  fact - factor
2310a30f8f8cSSatish Balay 
2311a30f8f8cSSatish Balay    Collective on Mat
2312a30f8f8cSSatish Balay 
2313a30f8f8cSSatish Balay    Level: advanced
2314a30f8f8cSSatish Balay 
2315a30f8f8cSSatish Balay   Notes:
2316a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2317a30f8f8cSSatish Balay 
2318a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay .seealso: MatSetOption()
2321dcf5cc72SBarry Smith @XXXXX*/
2322dcf5cc72SBarry Smith 
232324d5174aSHong Zhang 
23244a2ae208SSatish Balay #undef __FUNCT__
2325985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2326985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
232724d5174aSHong Zhang {
232824d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2329f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2330ca54ac64SHong Zhang   PetscReal      atmp;
233187828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2332dfbe8321SBarry Smith   PetscErrorCode ierr;
23331302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
23341302d50aSBarry Smith   PetscMPIInt    rank,size;
23351302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
233687828ca2SBarry Smith   PetscScalar    *va;
23378a1c53f2SBarry Smith   MatScalar      *ba;
2338f4c0e9e4SHong Zhang   MPI_Status     stat;
233924d5174aSHong Zhang 
234024d5174aSHong Zhang   PetscFunctionBegin;
2341985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2342985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
23431ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2344f4c0e9e4SHong Zhang 
23457adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
23467adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2347f4c0e9e4SHong Zhang 
2348899cda47SBarry Smith   bs   = A->rmap.bs;
2349f4c0e9e4SHong Zhang   mbs  = a->mbs;
2350f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2351f4c0e9e4SHong Zhang   ba   = b->a;
2352f4c0e9e4SHong Zhang   bi   = b->i;
2353f4c0e9e4SHong Zhang   bj   = b->j;
2354f4c0e9e4SHong Zhang 
2355f4c0e9e4SHong Zhang   /* find ownerships */
2356899cda47SBarry Smith   rowners_bs = A->rmap.range;
2357f4c0e9e4SHong Zhang 
2358f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
235982502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2360ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2361f4c0e9e4SHong Zhang 
2362f4c0e9e4SHong Zhang   /* row_max for B */
2363b8475685SHong Zhang   if (rank != size-1){
2364f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2365f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2366f4c0e9e4SHong Zhang       brow  = bs*i;
2367f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2368f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2369f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2370ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
237104d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2372f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2373f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2374ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2375ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2376f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2377f4c0e9e4SHong Zhang           }
2378f4c0e9e4SHong Zhang         }
2379f4c0e9e4SHong Zhang         bj++;
2380f4c0e9e4SHong Zhang       }
2381f4c0e9e4SHong Zhang     }
2382f4c0e9e4SHong Zhang 
2383f4c0e9e4SHong Zhang     /* send values to its owners */
2384f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2385f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2386ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
23877adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2388ca54ac64SHong Zhang     }
2389f4c0e9e4SHong Zhang   }
2390f4c0e9e4SHong Zhang 
2391f4c0e9e4SHong Zhang   /* receive values */
2392ca54ac64SHong Zhang   if (rank){
2393f4c0e9e4SHong Zhang     rvalues = work;
2394ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2395f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
23967adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2397f4c0e9e4SHong Zhang       /* process values */
2398f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2399ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2400f4c0e9e4SHong Zhang       }
2401f4c0e9e4SHong Zhang     }
2402ca54ac64SHong Zhang   }
2403f4c0e9e4SHong Zhang 
24041ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2405ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
240624d5174aSHong Zhang   PetscFunctionReturn(0);
240724d5174aSHong Zhang }
24082798e883SHong Zhang 
24092798e883SHong Zhang #undef __FUNCT__
24102798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
24111302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24122798e883SHong Zhang {
24132798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2414dfbe8321SBarry Smith   PetscErrorCode ierr;
2415899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2416efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2417ffe4fb16SHong Zhang   Vec            bb1;
2418ffe4fb16SHong Zhang 
2419ffe4fb16SHong Zhang   PetscFunctionBegin;
242077431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2421ffe4fb16SHong Zhang   if (bs > 1)
2422ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2423ffe4fb16SHong Zhang 
2424ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2425ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2426ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2427ffe4fb16SHong Zhang       its--;
2428ffe4fb16SHong Zhang     }
2429ffe4fb16SHong Zhang 
2430ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2431ffe4fb16SHong Zhang     while (its--){
2432ffe4fb16SHong Zhang 
2433ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2434ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2435ffe4fb16SHong Zhang 
2436ffe4fb16SHong Zhang       /* copy xx into slvec0a */
24371ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
24381ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2439ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24401ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2441ffe4fb16SHong Zhang 
2442efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2443ffe4fb16SHong Zhang 
2444ffe4fb16SHong Zhang       /* copy bb into slvec1a */
24451ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
24461ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2447ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24481ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2449ffe4fb16SHong Zhang 
2450ffe4fb16SHong Zhang       /* set slvec1b = 0 */
24512dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2452ffe4fb16SHong Zhang 
2453ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
24541ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
24551ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2456ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2457ffe4fb16SHong Zhang 
2458ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2459ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2460ffe4fb16SHong Zhang 
2461ffe4fb16SHong Zhang       /* local diagonal sweep */
2462ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2463ffe4fb16SHong Zhang     }
2464ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2465ffe4fb16SHong Zhang   } else {
2466ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2467ffe4fb16SHong Zhang   }
2468ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2469ffe4fb16SHong Zhang }
2470ffe4fb16SHong Zhang 
2471ffe4fb16SHong Zhang #undef __FUNCT__
2472ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
24731302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2474ffe4fb16SHong Zhang {
2475ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2476dfbe8321SBarry Smith   PetscErrorCode ierr;
24772798e883SHong Zhang   Vec            lvec1,bb1;
24782798e883SHong Zhang 
24792798e883SHong Zhang   PetscFunctionBegin;
248077431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2481899cda47SBarry Smith   if (matin->rmap.bs > 1)
24822798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24832798e883SHong Zhang 
2484c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
24852798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2486bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
24872798e883SHong Zhang       its--;
24882798e883SHong Zhang     }
24892798e883SHong Zhang 
24902798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
24912798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24922798e883SHong Zhang     while (its--){
2493ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
24942798e883SHong Zhang 
24952798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
24962798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2497efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
24982798e883SHong Zhang 
2499ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25002798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2501ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
25022798e883SHong Zhang 
25032798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2504efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25052798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25062798e883SHong Zhang 
2507ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
25082798e883SHong Zhang 
2509c14dc6b6SHong Zhang       /* diagonal sweep */
2510bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25112798e883SHong Zhang     }
25122798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25132798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2514c14dc6b6SHong Zhang   } else {
2515c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2516c14dc6b6SHong Zhang   }
25172798e883SHong Zhang   PetscFunctionReturn(0);
25182798e883SHong Zhang }
25192798e883SHong Zhang 
2520