1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define CHUNKSIZE 10 55a30f8f8cSSatish Balay 56a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 57a30f8f8cSSatish Balay { \ 58a30f8f8cSSatish Balay \ 59a30f8f8cSSatish Balay brow = row/bs; \ 60a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 61a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 62a30f8f8cSSatish Balay bcol = col/bs; \ 63a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 64a30f8f8cSSatish Balay low = 0; high = nrow; \ 65a30f8f8cSSatish Balay while (high-low > 3) { \ 66a30f8f8cSSatish Balay t = (low+high)/2; \ 67a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 68a30f8f8cSSatish Balay else low = t; \ 69a30f8f8cSSatish Balay } \ 70a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 71a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 72a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 73a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 74a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 75a30f8f8cSSatish Balay else *bap = value; \ 76a30f8f8cSSatish Balay goto a_noinsert; \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 80085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 81421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 82a30f8f8cSSatish Balay N = nrow++ - 1; \ 83a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 84a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 85a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 86a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 87a30f8f8cSSatish Balay } \ 88a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 89a30f8f8cSSatish Balay rp[_i] = bcol; \ 90a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 91a30f8f8cSSatish Balay a_noinsert:; \ 92a30f8f8cSSatish Balay ailen[brow] = nrow; \ 93a30f8f8cSSatish Balay } 94*e5e170daSBarry Smith 95a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 96a30f8f8cSSatish Balay { \ 97a30f8f8cSSatish Balay brow = row/bs; \ 98a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 99a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 100a30f8f8cSSatish Balay bcol = col/bs; \ 101a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 102a30f8f8cSSatish Balay low = 0; high = nrow; \ 103a30f8f8cSSatish Balay while (high-low > 3) { \ 104a30f8f8cSSatish Balay t = (low+high)/2; \ 105a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 106a30f8f8cSSatish Balay else low = t; \ 107a30f8f8cSSatish Balay } \ 108a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 109a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 110a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 111a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 112a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 113a30f8f8cSSatish Balay else *bap = value; \ 114a30f8f8cSSatish Balay goto b_noinsert; \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 118085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 119421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 120a30f8f8cSSatish Balay N = nrow++ - 1; \ 121a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 122a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 123a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay } \ 126a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 127a30f8f8cSSatish Balay rp[_i] = bcol; \ 128a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 129a30f8f8cSSatish Balay b_noinsert:; \ 130a30f8f8cSSatish Balay bilen[brow] = nrow; \ 131a30f8f8cSSatish Balay } 132a30f8f8cSSatish Balay 133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 134a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 135a30f8f8cSSatish Balay */ 1364a2ae208SSatish Balay #undef __FUNCT__ 137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 139a30f8f8cSSatish Balay { 140a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 141a30f8f8cSSatish Balay MatScalar value; 142b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 143dfbe8321SBarry Smith PetscErrorCode ierr; 1441302d50aSBarry Smith PetscInt i,j,row,col; 145899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 146899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 147899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 148a30f8f8cSSatish Balay 149a30f8f8cSSatish Balay /* Some Variables required in the macro */ 150a30f8f8cSSatish Balay Mat A = baij->A; 151a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1521302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 153a30f8f8cSSatish Balay MatScalar *aa=a->a; 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay Mat B = baij->B; 156a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1571302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 158a30f8f8cSSatish Balay MatScalar *ba=b->a; 159a30f8f8cSSatish Balay 1601302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1611302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 162a30f8f8cSSatish Balay MatScalar *ap,*bap; 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay /* for stash */ 165910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 166910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 167a30f8f8cSSatish Balay 168a30f8f8cSSatish Balay PetscFunctionBegin; 169a30f8f8cSSatish Balay 170a30f8f8cSSatish Balay if (!baij->donotstash){ 17159ffdab8SBarry Smith if (n > baij->n_loc) { 17259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith baij->n_loc = n; 17759ffdab8SBarry Smith } 17859ffdab8SBarry Smith in_loc = baij->in_loc; 17959ffdab8SBarry Smith v_loc = baij->v_loc; 180a30f8f8cSSatish Balay } 181a30f8f8cSSatish Balay 182a30f8f8cSSatish Balay for (i=0; i<m; i++) { 183a30f8f8cSSatish Balay if (im[i] < 0) continue; 1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 185899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 186a30f8f8cSSatish Balay #endif 187a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 188a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 189a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19001b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19101b2bd88SHong Zhang if (a->ignore_ltriangular){ 19201b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19301b2bd88SHong Zhang } else { 1944e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19501b2bd88SHong Zhang } 19601b2bd88SHong Zhang } 197a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 198a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 199a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 200a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 201a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 202a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 203a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 204a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 206899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 207a30f8f8cSSatish Balay #endif 208a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 209a30f8f8cSSatish Balay if (mat->was_assembled) { 210a30f8f8cSSatish Balay if (!baij->colmap) { 211653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 212a30f8f8cSSatish Balay } 213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 214a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21571730473SSatish Balay col = col - 1; 216a30f8f8cSSatish Balay #else 21771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 218a30f8f8cSSatish Balay #endif 219a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 220a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 221a30f8f8cSSatish Balay col = in[j]; 222a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 223a30f8f8cSSatish Balay B = baij->B; 224a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 225a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 226a30f8f8cSSatish Balay ba=b->a; 22771730473SSatish Balay } else col += in[j]%bs; 228a30f8f8cSSatish Balay } else col = in[j]; 229a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 231a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } else { /* off processor entry */ 235a30f8f8cSSatish Balay if (!baij->donotstash) { 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 2610880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 28177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 2860880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2870880e062SHong Zhang if ((roworiented) && (n == 1)) { 288f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2890880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 290f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2910880e062SHong Zhang } else { /* Here a copy is required */ 2920880e062SHong Zhang if (roworiented) { 2930880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2940880e062SHong Zhang } else { 2950880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2960880e062SHong Zhang } 2970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2980880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2990880e062SHong Zhang *barray++ = *value++; 3000880e062SHong Zhang } 3010880e062SHong Zhang } 3020880e062SHong Zhang barray -=bs2; 3030880e062SHong Zhang } 3040880e062SHong Zhang 3050880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3060880e062SHong Zhang col = in[j] - cstart; 3070880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3080880e062SHong Zhang } 3090880e062SHong Zhang else if (in[j] < 0) continue; 3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 31177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3120880e062SHong Zhang #endif 3130880e062SHong Zhang else { 3140880e062SHong Zhang if (mat->was_assembled) { 3150880e062SHong Zhang if (!baij->colmap) { 316653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3170880e062SHong Zhang } 3180880e062SHong Zhang 3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3211302d50aSBarry Smith { PetscInt data; 3220880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3230880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3240880e062SHong Zhang } 3250880e062SHong Zhang #else 3260880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #endif 3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3300880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3310880e062SHong Zhang col = (col - 1)/bs; 3320880e062SHong Zhang #else 3330880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3340880e062SHong Zhang #endif 3350880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3360880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3370880e062SHong Zhang col = in[j]; 3380880e062SHong Zhang } 3390880e062SHong Zhang } 3400880e062SHong Zhang else col = in[j]; 341e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang } else { 3450880e062SHong Zhang if (!baij->donotstash) { 3460880e062SHong Zhang if (roworiented) { 3470880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3480880e062SHong Zhang } else { 3490880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang } 3540880e062SHong Zhang PetscFunctionReturn(0); 355a30f8f8cSSatish Balay } 356a30f8f8cSSatish Balay 3574a2ae208SSatish Balay #undef __FUNCT__ 3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 360a30f8f8cSSatish Balay { 361f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3626849ba73SBarry Smith PetscErrorCode ierr; 363899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 364899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 365a30f8f8cSSatish Balay 366a30f8f8cSSatish Balay PetscFunctionBegin; 367a30f8f8cSSatish Balay for (i=0; i<m; i++) { 36897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 369899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 370a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 371a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 372a30f8f8cSSatish Balay for (j=0; j<n; j++) { 37397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 374899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 375a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 376a30f8f8cSSatish Balay col = idxn[j] - bscstart; 377c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 378a30f8f8cSSatish Balay } else { 379a30f8f8cSSatish Balay if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 383a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 384a30f8f8cSSatish Balay data --; 385a30f8f8cSSatish Balay #else 386a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 387a30f8f8cSSatish Balay #endif 388a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 389a30f8f8cSSatish Balay else { 390a30f8f8cSSatish Balay col = data + idxn[j]%bs; 391e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } else { 39629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay PetscFunctionReturn(0); 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay 4024a2ae208SSatish Balay #undef __FUNCT__ 4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 405a30f8f8cSSatish Balay { 406a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 407dfbe8321SBarry Smith PetscErrorCode ierr; 408a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 409a30f8f8cSSatish Balay 410a30f8f8cSSatish Balay PetscFunctionBegin; 411a30f8f8cSSatish Balay if (baij->size == 1) { 412a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 413a30f8f8cSSatish Balay } else { 414a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 415f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 418a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 419a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4207adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 421a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 422a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4230b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4240b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4250b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4260b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 427899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 428899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 4290b8dc8d2SHong Zhang MatScalar *v; 4300b8dc8d2SHong Zhang 431899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 432899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 433899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 4340b8dc8d2SHong Zhang /* Amat */ 4350b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4360b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4370b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4380b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4390b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4400b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4410b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4420b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4430b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4440b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4450b8dc8d2SHong Zhang /* non-diagonal block */ 4460b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang /* Bmat */ 4520b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4530b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4540b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4550b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4560b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4570b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4580b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4590b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4600b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4610b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4620b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 4677adad957SLisandro Dalcin ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4680b8dc8d2SHong Zhang *norm = 0.0; 469899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 4700b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4710b8dc8d2SHong Zhang } 4720b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 473a30f8f8cSSatish Balay } else { 47429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 475a30f8f8cSSatish Balay } 476a30f8f8cSSatish Balay } 477a30f8f8cSSatish Balay PetscFunctionReturn(0); 478a30f8f8cSSatish Balay } 479a30f8f8cSSatish Balay 4804a2ae208SSatish Balay #undef __FUNCT__ 4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 483a30f8f8cSSatish Balay { 484a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 485dfbe8321SBarry Smith PetscErrorCode ierr; 4861302d50aSBarry Smith PetscInt nstash,reallocs; 487a30f8f8cSSatish Balay InsertMode addv; 488a30f8f8cSSatish Balay 489a30f8f8cSSatish Balay PetscFunctionBegin; 490a30f8f8cSSatish Balay if (baij->donotstash) { 491a30f8f8cSSatish Balay PetscFunctionReturn(0); 492a30f8f8cSSatish Balay } 493a30f8f8cSSatish Balay 494a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4957adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 496a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 49729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 500a30f8f8cSSatish Balay 5011e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr); 5021e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 503a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay PetscFunctionReturn(0); 508a30f8f8cSSatish Balay } 509a30f8f8cSSatish Balay 5104a2ae208SSatish Balay #undef __FUNCT__ 5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 513a30f8f8cSSatish Balay { 514a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 515a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5166849ba73SBarry Smith PetscErrorCode ierr; 51713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 518e44c0bd4SBarry Smith PetscInt *row,*col; 519e44c0bd4SBarry Smith PetscTruth other_disassembled; 52013f74950SBarry Smith PetscMPIInt n; 521a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 522a30f8f8cSSatish Balay MatScalar *val; 523a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 524a30f8f8cSSatish Balay 52591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 526a30f8f8cSSatish Balay PetscFunctionBegin; 527a30f8f8cSSatish Balay 528a30f8f8cSSatish Balay if (!baij->donotstash) { 529a30f8f8cSSatish Balay while (1) { 530a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 531a30f8f8cSSatish Balay if (!flg) break; 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay for (i=0; i<n;) { 534a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 535a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 536a30f8f8cSSatish Balay if (j < n) ncols = j-i; 537a30f8f8cSSatish Balay else ncols = n-i; 538a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 539dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 540a30f8f8cSSatish Balay i = j; 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 544a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 545a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 546a30f8f8cSSatish Balay restore the original flags */ 547a30f8f8cSSatish Balay r1 = baij->roworiented; 548a30f8f8cSSatish Balay r2 = a->roworiented; 54991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 550a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 551a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 553a30f8f8cSSatish Balay while (1) { 554a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 555a30f8f8cSSatish Balay if (!flg) break; 556a30f8f8cSSatish Balay 557a30f8f8cSSatish Balay for (i=0; i<n;) { 558a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 559a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 560a30f8f8cSSatish Balay if (j < n) ncols = j-i; 561a30f8f8cSSatish Balay else ncols = n-i; 562dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 563a30f8f8cSSatish Balay i = j; 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay 572a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 573a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay 575a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 576a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 577a30f8f8cSSatish Balay /* 578a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 579a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 580a30f8f8cSSatish Balay */ 581a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5827adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 583a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 584c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay 588a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 590a30f8f8cSSatish Balay } 59191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 595a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 596a30f8f8cSSatish Balay baij->rowvalues = 0; 5975222a1afSHong Zhang 598a30f8f8cSSatish Balay PetscFunctionReturn(0); 599a30f8f8cSSatish Balay } 600a30f8f8cSSatish Balay 601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6024a2ae208SSatish Balay #undef __FUNCT__ 6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 605a30f8f8cSSatish Balay { 606a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 607dfbe8321SBarry Smith PetscErrorCode ierr; 608899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6091302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61032077d6dSBarry Smith PetscTruth iascii,isdraw; 611b0a32e0cSBarry Smith PetscViewer sviewer; 612f3ef73ceSBarry Smith PetscViewerFormat format; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay PetscFunctionBegin; 61532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 616fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 61732077d6dSBarry Smith if (iascii) { 618b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 619456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 620a30f8f8cSSatish Balay MatInfo info; 6217adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 622a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 624899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 625899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 62777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 62977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 630b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 633a30f8f8cSSatish Balay PetscFunctionReturn(0); 634fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 636a30f8f8cSSatish Balay PetscFunctionReturn(0); 637c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 638c1490034SHong Zhang PetscFunctionReturn(0); 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay if (isdraw) { 643b0a32e0cSBarry Smith PetscDraw draw; 644a30f8f8cSSatish Balay PetscTruth isnull; 645b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 646b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay if (size == 1) { 6507adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 651a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 652a30f8f8cSSatish Balay } else { 653a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 654a30f8f8cSSatish Balay Mat A; 65565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 657899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 658a30f8f8cSSatish Balay MatScalar *a; 659a30f8f8cSSatish Balay 660f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6617adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 662a30f8f8cSSatish Balay if (!rank) { 663f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } else { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 668899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 66952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay /* copy over the A part */ 67265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 673a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6741302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 677e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 678a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 679a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 680e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 681a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 682dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 683a30f8f8cSSatish Balay col++; a += bs; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay /* copy over the B part */ 68865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 690a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 691e9f7bc9eSHong Zhang 692e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 693a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 694a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 695a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 696a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 697799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 698a30f8f8cSSatish Balay col++; a += bs; 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay /* 706a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 707b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 708a30f8f8cSSatish Balay */ 709b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71065d70643SHong Zhang if (!rank) { 7117adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 713a30f8f8cSSatish Balay } 714b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay PetscFunctionReturn(0); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay 7204a2ae208SSatish Balay #undef __FUNCT__ 7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 723a30f8f8cSSatish Balay { 724dfbe8321SBarry Smith PetscErrorCode ierr; 72532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 726a30f8f8cSSatish Balay 727a30f8f8cSSatish Balay PetscFunctionBegin; 72832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 729fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 730b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 731fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 733a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 734a30f8f8cSSatish Balay } else { 7351302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay PetscFunctionReturn(0); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay 7404a2ae208SSatish Balay #undef __FUNCT__ 7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 743a30f8f8cSSatish Balay { 744a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 745dfbe8321SBarry Smith PetscErrorCode ierr; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay PetscFunctionBegin; 748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 749899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 750a30f8f8cSSatish Balay #endif 751a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 752a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7569c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 757a30f8f8cSSatish Balay #else 75805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #endif 76005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 761a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 762a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76340781036SHong Zhang if (baij->slvec0) { 76440781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76540781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76640781036SHong Zhang } 76740781036SHong Zhang if (baij->slvec1) { 76840781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 76940781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77040781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77140781036SHong Zhang } 77240781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 77305b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 77405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 776a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 77705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 778a30f8f8cSSatish Balay #endif 77959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 781899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 782a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 783901853e0SKris Buschelman 784dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 785901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 786901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 787901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 788901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 789a30f8f8cSSatish Balay PetscFunctionReturn(0); 790a30f8f8cSSatish Balay } 791a30f8f8cSSatish Balay 7924a2ae208SSatish Balay #undef __FUNCT__ 793a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 794dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 795a9d4b620SHong Zhang { 796a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 797dfbe8321SBarry Smith PetscErrorCode ierr; 798899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 799a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 800a9d4b620SHong Zhang 801a9d4b620SHong Zhang PetscFunctionBegin; 802a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 803899cda47SBarry Smith if (nt != A->cmap.n) { 804a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 805a9d4b620SHong Zhang } 806a9d4b620SHong Zhang 807a9d4b620SHong Zhang /* diagonal part */ 808a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8092dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 810a9d4b620SHong Zhang 811a9d4b620SHong Zhang /* subdiagonal part */ 812a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 813fc165ae2SBarry Smith 814a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8151ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8161ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 817a9d4b620SHong Zhang 818fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 819fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8201ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 821fc165ae2SBarry Smith 822fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 823ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 824a9d4b620SHong Zhang /* supperdiagonal part */ 825a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 826a9d4b620SHong Zhang PetscFunctionReturn(0); 827a9d4b620SHong Zhang } 828a9d4b620SHong Zhang 829a9d4b620SHong Zhang #undef __FUNCT__ 83040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 831dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 832a30f8f8cSSatish Balay { 833a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 834dfbe8321SBarry Smith PetscErrorCode ierr; 8351302d50aSBarry Smith PetscInt nt; 836a30f8f8cSSatish Balay 837a30f8f8cSSatish Balay PetscFunctionBegin; 838a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 839899cda47SBarry Smith if (nt != A->cmap.n) { 84029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 843899cda47SBarry Smith if (nt != A->rmap.N) { 84429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 845a30f8f8cSSatish Balay } 84665d70643SHong Zhang 847ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 848b941877fSHong Zhang /* do diagonal part */ 849b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 850b941877fSHong Zhang /* do supperdiagonal part */ 851ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 852b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 853b941877fSHong Zhang /* do subdiagonal part */ 854b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 855ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 856ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 85765d70643SHong Zhang 858a30f8f8cSSatish Balay PetscFunctionReturn(0); 859a30f8f8cSSatish Balay } 860a30f8f8cSSatish Balay 8614a2ae208SSatish Balay #undef __FUNCT__ 8624a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 863dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 864a30f8f8cSSatish Balay { 865de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 866dfbe8321SBarry Smith PetscErrorCode ierr; 867899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 868a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 869a9d4b620SHong Zhang 870a9d4b620SHong Zhang PetscFunctionBegin; 871a9d4b620SHong Zhang /* 8727adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 8737adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 874a9d4b620SHong Zhang */ 875a9d4b620SHong Zhang /* diagonal part */ 876a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 8772dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 878a9d4b620SHong Zhang 879a9d4b620SHong Zhang /* subdiagonal part */ 880a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 881a9d4b620SHong Zhang 882a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8831ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8841ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 885a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8861ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 887a9d4b620SHong Zhang 888ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8891ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 890ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 891a9d4b620SHong Zhang 892a9d4b620SHong Zhang /* supperdiagonal part */ 893a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 894a9d4b620SHong Zhang 895a9d4b620SHong Zhang PetscFunctionReturn(0); 896a9d4b620SHong Zhang } 897a9d4b620SHong Zhang 898a9d4b620SHong Zhang #undef __FUNCT__ 899a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 900dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 901a9d4b620SHong Zhang { 902a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 903dfbe8321SBarry Smith PetscErrorCode ierr; 904a30f8f8cSSatish Balay 905a30f8f8cSSatish Balay PetscFunctionBegin; 906ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 907b941877fSHong Zhang /* do diagonal part */ 908b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 909b941877fSHong Zhang /* do supperdiagonal part */ 910ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 911de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 912de8b6608SHong Zhang 913b941877fSHong Zhang /* do subdiagonal part */ 914a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 915ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 916ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 917aa482183SHong Zhang 918a30f8f8cSSatish Balay PetscFunctionReturn(0); 919a30f8f8cSSatish Balay } 920a30f8f8cSSatish Balay 921a30f8f8cSSatish Balay /* 922a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 923a30f8f8cSSatish Balay diagonal block 924a30f8f8cSSatish Balay */ 9254a2ae208SSatish Balay #undef __FUNCT__ 9264a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 927dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 928a30f8f8cSSatish Balay { 929a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 930dfbe8321SBarry Smith PetscErrorCode ierr; 931a30f8f8cSSatish Balay 932a30f8f8cSSatish Balay PetscFunctionBegin; 933899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 934a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 935a30f8f8cSSatish Balay PetscFunctionReturn(0); 936a30f8f8cSSatish Balay } 937a30f8f8cSSatish Balay 9384a2ae208SSatish Balay #undef __FUNCT__ 9394a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 940f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 941a30f8f8cSSatish Balay { 942a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 943dfbe8321SBarry Smith PetscErrorCode ierr; 944a30f8f8cSSatish Balay 945a30f8f8cSSatish Balay PetscFunctionBegin; 946f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 947f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 948a30f8f8cSSatish Balay PetscFunctionReturn(0); 949a30f8f8cSSatish Balay } 950a30f8f8cSSatish Balay 9514a2ae208SSatish Balay #undef __FUNCT__ 9524a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9531302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 954a30f8f8cSSatish Balay { 955d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 956d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 957d0d4cfc2SHong Zhang PetscErrorCode ierr; 958899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 959899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 960899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 961d0d4cfc2SHong Zhang 962a30f8f8cSSatish Balay PetscFunctionBegin; 963d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 964d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 965d0d4cfc2SHong Zhang 966d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 967d0d4cfc2SHong Zhang /* 968d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 969d0d4cfc2SHong Zhang */ 970d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 971d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 972d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 973d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 974d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 975d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 976d0d4cfc2SHong Zhang } 977d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 978d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 979d0d4cfc2SHong Zhang } 980d0d4cfc2SHong Zhang 981d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 982d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 983d0d4cfc2SHong Zhang 984d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 985d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 986d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 987d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 988d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 989d0d4cfc2SHong Zhang nztot = nzA + nzB; 990d0d4cfc2SHong Zhang 991d0d4cfc2SHong Zhang cmap = mat->garray; 992d0d4cfc2SHong Zhang if (v || idx) { 993d0d4cfc2SHong Zhang if (nztot) { 994d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 995d0d4cfc2SHong Zhang PetscInt imark = -1; 996d0d4cfc2SHong Zhang if (v) { 997d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 998d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 999d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1000d0d4cfc2SHong Zhang else break; 1001d0d4cfc2SHong Zhang } 1002d0d4cfc2SHong Zhang imark = i; 1003d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1004d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1005d0d4cfc2SHong Zhang } 1006d0d4cfc2SHong Zhang if (idx) { 1007d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1008d0d4cfc2SHong Zhang if (imark > -1) { 1009d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1010d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1011d0d4cfc2SHong Zhang } 1012d0d4cfc2SHong Zhang } else { 1013d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1014d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1015d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1016d0d4cfc2SHong Zhang else break; 1017d0d4cfc2SHong Zhang } 1018d0d4cfc2SHong Zhang imark = i; 1019d0d4cfc2SHong Zhang } 1020d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1021d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1022d0d4cfc2SHong Zhang } 1023d0d4cfc2SHong Zhang } else { 1024d0d4cfc2SHong Zhang if (idx) *idx = 0; 1025d0d4cfc2SHong Zhang if (v) *v = 0; 1026d0d4cfc2SHong Zhang } 1027d0d4cfc2SHong Zhang } 1028d0d4cfc2SHong Zhang *nz = nztot; 1029d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1030d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1031a30f8f8cSSatish Balay PetscFunctionReturn(0); 1032a30f8f8cSSatish Balay } 1033a30f8f8cSSatish Balay 10344a2ae208SSatish Balay #undef __FUNCT__ 10354a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10361302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1037a30f8f8cSSatish Balay { 1038a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1039a30f8f8cSSatish Balay 1040a30f8f8cSSatish Balay PetscFunctionBegin; 1041abc0a331SBarry Smith if (!baij->getrowactive) { 1042abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1043a30f8f8cSSatish Balay } 1044a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1045a30f8f8cSSatish Balay PetscFunctionReturn(0); 1046a30f8f8cSSatish Balay } 1047a30f8f8cSSatish Balay 10484a2ae208SSatish Balay #undef __FUNCT__ 1049d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1050d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1051d0d4cfc2SHong Zhang { 1052d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1053d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1054d0d4cfc2SHong Zhang 1055d0d4cfc2SHong Zhang PetscFunctionBegin; 1056d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1057d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1058d0d4cfc2SHong Zhang } 1059d0d4cfc2SHong Zhang #undef __FUNCT__ 1060d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1061d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1062d0d4cfc2SHong Zhang { 1063d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1064d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1065d0d4cfc2SHong Zhang 1066d0d4cfc2SHong Zhang PetscFunctionBegin; 1067d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1068d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1069d0d4cfc2SHong Zhang } 1070d0d4cfc2SHong Zhang 1071d0d4cfc2SHong Zhang #undef __FUNCT__ 107299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 107399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 107499cafbc1SBarry Smith { 107599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 107699cafbc1SBarry Smith PetscErrorCode ierr; 107799cafbc1SBarry Smith 107899cafbc1SBarry Smith PetscFunctionBegin; 107999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 108099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 108199cafbc1SBarry Smith PetscFunctionReturn(0); 108299cafbc1SBarry Smith } 108399cafbc1SBarry Smith 108499cafbc1SBarry Smith #undef __FUNCT__ 108599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 108699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 108799cafbc1SBarry Smith { 108899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 108999cafbc1SBarry Smith PetscErrorCode ierr; 109099cafbc1SBarry Smith 109199cafbc1SBarry Smith PetscFunctionBegin; 109299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 109399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 109499cafbc1SBarry Smith PetscFunctionReturn(0); 109599cafbc1SBarry Smith } 109699cafbc1SBarry Smith 109799cafbc1SBarry Smith #undef __FUNCT__ 10984a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1099dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1100a30f8f8cSSatish Balay { 1101a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1102dfbe8321SBarry Smith PetscErrorCode ierr; 1103a30f8f8cSSatish Balay 1104a30f8f8cSSatish Balay PetscFunctionBegin; 1105a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1106a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1107a30f8f8cSSatish Balay PetscFunctionReturn(0); 1108a30f8f8cSSatish Balay } 1109a30f8f8cSSatish Balay 11104a2ae208SSatish Balay #undef __FUNCT__ 11114a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1112dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1113a30f8f8cSSatish Balay { 1114a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1115a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1116dfbe8321SBarry Smith PetscErrorCode ierr; 1117a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1118a30f8f8cSSatish Balay 1119a30f8f8cSSatish Balay PetscFunctionBegin; 1120899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1121a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1122a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1123a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1124a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1125a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1126a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1127a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1128a30f8f8cSSatish Balay info->nz_used = isend[0]; 1129a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1130a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1131a30f8f8cSSatish Balay info->memory = isend[3]; 1132a30f8f8cSSatish Balay info->mallocs = isend[4]; 1133a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11347adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1135a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1136a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1137a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1138a30f8f8cSSatish Balay info->memory = irecv[3]; 1139a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1140a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11417adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1142a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1143a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1144a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1145a30f8f8cSSatish Balay info->memory = irecv[3]; 1146a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1147a30f8f8cSSatish Balay } else { 114877431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1149a30f8f8cSSatish Balay } 1150899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1151899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1152899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1153899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1154a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1155a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1156a30f8f8cSSatish Balay info->factor_mallocs = 0; 1157a30f8f8cSSatish Balay PetscFunctionReturn(0); 1158a30f8f8cSSatish Balay } 1159a30f8f8cSSatish Balay 11604a2ae208SSatish Balay #undef __FUNCT__ 11614a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 11624e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1163a30f8f8cSSatish Balay { 1164a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1165d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1166dfbe8321SBarry Smith PetscErrorCode ierr; 1167a30f8f8cSSatish Balay 1168a30f8f8cSSatish Balay PetscFunctionBegin; 1169e98b92d7SKris Buschelman switch (op) { 1170512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1171e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1172e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1173e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 11744e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11754e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1176e98b92d7SKris Buschelman break; 1177e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 11784e0d8c25SBarry Smith a->roworiented = flg; 11794e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11804e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1181e98b92d7SKris Buschelman break; 11824e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1183290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1184e98b92d7SKris Buschelman break; 1185e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 11864e0d8c25SBarry Smith a->donotstash = flg; 1187e98b92d7SKris Buschelman break; 1188e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 11894e0d8c25SBarry Smith a->ht_flag = flg; 1190e98b92d7SKris Buschelman break; 11919a4540c5SBarry Smith case MAT_HERMITIAN: 11924e0d8c25SBarry Smith if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 119377e54ba9SKris Buschelman case MAT_SYMMETRIC: 119477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 11959a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 11964e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1197290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 119877e54ba9SKris Buschelman break; 1199d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12004e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1201d0d4cfc2SHong Zhang break; 1202d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12034e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1204d0d4cfc2SHong Zhang break; 1205d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12064e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1207d0d4cfc2SHong Zhang break; 1208e98b92d7SKris Buschelman default: 1209ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1210a30f8f8cSSatish Balay } 1211a30f8f8cSSatish Balay PetscFunctionReturn(0); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay 12144a2ae208SSatish Balay #undef __FUNCT__ 12158115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1216dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1217a30f8f8cSSatish Balay { 1218dfbe8321SBarry Smith PetscErrorCode ierr; 1219a30f8f8cSSatish Balay PetscFunctionBegin; 1220999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12218115998fSBarry Smith PetscFunctionReturn(0); 1222a30f8f8cSSatish Balay } 1223a30f8f8cSSatish Balay 12244a2ae208SSatish Balay #undef __FUNCT__ 12254a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1226dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1227a30f8f8cSSatish Balay { 1228a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1229a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1230dfbe8321SBarry Smith PetscErrorCode ierr; 12315e90f9d9SHong Zhang PetscInt nv,m,n; 1232b3bf805bSHong Zhang PetscTruth flg; 1233a30f8f8cSSatish Balay 1234a30f8f8cSSatish Balay PetscFunctionBegin; 1235a30f8f8cSSatish Balay if (ll != rr){ 1236b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1237b3bf805bSHong Zhang if (!flg) 123829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1239a30f8f8cSSatish Balay } 1240b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1241b3bf805bSHong Zhang 12425e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12435e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1244b3bf805bSHong Zhang 12455e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12465e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12475e90f9d9SHong Zhang 1248ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12495e90f9d9SHong Zhang 12505e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1251a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12525e90f9d9SHong Zhang 12535e90f9d9SHong Zhang /* scale the diagonal part */ 1254a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1255a30f8f8cSSatish Balay 12565e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1257ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1258a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1259a30f8f8cSSatish Balay PetscFunctionReturn(0); 1260a30f8f8cSSatish Balay } 1261a30f8f8cSSatish Balay 12624a2ae208SSatish Balay #undef __FUNCT__ 12634a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1264dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1265a30f8f8cSSatish Balay { 1266f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1267dfbe8321SBarry Smith PetscErrorCode ierr; 1268a30f8f8cSSatish Balay 1269a30f8f8cSSatish Balay PetscFunctionBegin; 1270a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1271a30f8f8cSSatish Balay PetscFunctionReturn(0); 1272a30f8f8cSSatish Balay } 1273a30f8f8cSSatish Balay 12746849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1275a30f8f8cSSatish Balay 12764a2ae208SSatish Balay #undef __FUNCT__ 12774a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1278dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1279a30f8f8cSSatish Balay { 1280a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1281a30f8f8cSSatish Balay Mat a,b,c,d; 1282a30f8f8cSSatish Balay PetscTruth flg; 1283dfbe8321SBarry Smith PetscErrorCode ierr; 1284a30f8f8cSSatish Balay 1285a30f8f8cSSatish Balay PetscFunctionBegin; 1286a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1287a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1288a30f8f8cSSatish Balay 1289a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1290abc0a331SBarry Smith if (flg) { 1291a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1292a30f8f8cSSatish Balay } 12937adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1294a30f8f8cSSatish Balay PetscFunctionReturn(0); 1295a30f8f8cSSatish Balay } 1296a30f8f8cSSatish Balay 12974a2ae208SSatish Balay #undef __FUNCT__ 12983c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 12993c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13003c896bc6SHong Zhang { 13013c896bc6SHong Zhang PetscErrorCode ierr; 13023c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13033c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13043c896bc6SHong Zhang 13053c896bc6SHong Zhang PetscFunctionBegin; 13063c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13073c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1308d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13093c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1310d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13113c896bc6SHong Zhang } else { 13123c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13133c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13143c896bc6SHong Zhang } 13153c896bc6SHong Zhang PetscFunctionReturn(0); 13163c896bc6SHong Zhang } 13173c896bc6SHong Zhang 13183c896bc6SHong Zhang #undef __FUNCT__ 13194a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1320dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1321273d9f13SBarry Smith { 1322dfbe8321SBarry Smith PetscErrorCode ierr; 1323273d9f13SBarry Smith 1324273d9f13SBarry Smith PetscFunctionBegin; 13257edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1326273d9f13SBarry Smith PetscFunctionReturn(0); 1327273d9f13SBarry Smith } 1328a5e6ed63SBarry Smith 13294fe895cdSHong Zhang #include "petscblaslapack.h" 13304fe895cdSHong Zhang #undef __FUNCT__ 13314fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13324fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13334fe895cdSHong Zhang { 13344fe895cdSHong Zhang PetscErrorCode ierr; 13354fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13364fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13374fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13384fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13394fe895cdSHong Zhang 13404fe895cdSHong Zhang PetscFunctionBegin; 13414fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13424fe895cdSHong Zhang PetscScalar alpha = a; 13434fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13444fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13450805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13464fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13474fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13484fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13490805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13504fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13514fe895cdSHong Zhang } else { 1352d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13534fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1354d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 13554fe895cdSHong Zhang } 13564fe895cdSHong Zhang PetscFunctionReturn(0); 13574fe895cdSHong Zhang } 13584fe895cdSHong Zhang 1359a5e6ed63SBarry Smith #undef __FUNCT__ 1360a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 13611302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1362a5e6ed63SBarry Smith { 13636849ba73SBarry Smith PetscErrorCode ierr; 13641302d50aSBarry Smith PetscInt i; 1365a5e6ed63SBarry Smith PetscTruth flg; 1366a5e6ed63SBarry Smith 13676849ba73SBarry Smith PetscFunctionBegin; 1368a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1369a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1370a5e6ed63SBarry Smith if (!flg) { 13711302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1372a5e6ed63SBarry Smith } 1373a5e6ed63SBarry Smith } 1374a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1375a5e6ed63SBarry Smith PetscFunctionReturn(0); 1376a5e6ed63SBarry Smith } 1377a5e6ed63SBarry Smith 1378a5e6ed63SBarry Smith 1379a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1380a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1381a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1382a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1383a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1384a9d4b620SHong Zhang MatMult_MPISBAIJ, 138597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1386431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1387431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1388a30f8f8cSSatish Balay 0, 1389a30f8f8cSSatish Balay 0, 1390a30f8f8cSSatish Balay 0, 139197304618SKris Buschelman /*10*/ 0, 1392a30f8f8cSSatish Balay 0, 1393a30f8f8cSSatish Balay 0, 13942798e883SHong Zhang MatRelax_MPISBAIJ, 1395a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 139697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1397a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1398a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1399a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1400a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 140197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1402a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1403a30f8f8cSSatish Balay 0, 1404a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1405a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1406dcf5cc72SBarry Smith /*25*/ 0, 1407a30f8f8cSSatish Balay 0, 1408a30f8f8cSSatish Balay 0, 1409a30f8f8cSSatish Balay 0, 1410a30f8f8cSSatish Balay 0, 141197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1412b5df2d14SHong Zhang 0, 1413a30f8f8cSSatish Balay 0, 1414a30f8f8cSSatish Balay 0, 1415a30f8f8cSSatish Balay 0, 141697304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1417a30f8f8cSSatish Balay 0, 1418a30f8f8cSSatish Balay 0, 1419a30f8f8cSSatish Balay 0, 1420a30f8f8cSSatish Balay 0, 14214fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1422a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1423d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1424a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14253c896bc6SHong Zhang MatCopy_MPISBAIJ, 14268c07d4e3SBarry Smith /*45*/ 0, 1427a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1428a30f8f8cSSatish Balay 0, 1429a30f8f8cSSatish Balay 0, 1430a30f8f8cSSatish Balay 0, 1431521d7252SBarry Smith /*50*/ 0, 1432a30f8f8cSSatish Balay 0, 1433a30f8f8cSSatish Balay 0, 1434a30f8f8cSSatish Balay 0, 1435a30f8f8cSSatish Balay 0, 143697304618SKris Buschelman /*55*/ 0, 1437a30f8f8cSSatish Balay 0, 1438a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1439a30f8f8cSSatish Balay 0, 1440a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 144197304618SKris Buschelman /*60*/ 0, 1442a30f8f8cSSatish Balay 0, 1443a30f8f8cSSatish Balay 0, 1444357abbc8SBarry Smith 0, 144524d5174aSHong Zhang 0, 144697304618SKris Buschelman /*65*/ 0, 144724d5174aSHong Zhang 0, 144824d5174aSHong Zhang 0, 144924d5174aSHong Zhang 0, 145024d5174aSHong Zhang 0, 1451985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ, 145224d5174aSHong Zhang 0, 145397304618SKris Buschelman 0, 145497304618SKris Buschelman 0, 145597304618SKris Buschelman 0, 145697304618SKris Buschelman /*75*/ 0, 145797304618SKris Buschelman 0, 145897304618SKris Buschelman 0, 145997304618SKris Buschelman 0, 146097304618SKris Buschelman 0, 146197304618SKris Buschelman /*80*/ 0, 146297304618SKris Buschelman 0, 146397304618SKris Buschelman 0, 146497304618SKris Buschelman 0, 1465865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1466865e5f61SKris Buschelman /*85*/ 0, 1467865e5f61SKris Buschelman 0, 1468865e5f61SKris Buschelman 0, 1469865e5f61SKris Buschelman 0, 1470865e5f61SKris Buschelman 0, 1471865e5f61SKris Buschelman /*90*/ 0, 1472865e5f61SKris Buschelman 0, 1473865e5f61SKris Buschelman 0, 1474865e5f61SKris Buschelman 0, 1475865e5f61SKris Buschelman 0, 1476865e5f61SKris Buschelman /*95*/ 0, 1477865e5f61SKris Buschelman 0, 1478865e5f61SKris Buschelman 0, 147999cafbc1SBarry Smith 0, 148099cafbc1SBarry Smith 0, 148199cafbc1SBarry Smith /*100*/0, 148299cafbc1SBarry Smith 0, 148399cafbc1SBarry Smith 0, 148499cafbc1SBarry Smith 0, 148599cafbc1SBarry Smith 0, 148699cafbc1SBarry Smith /*105*/0, 148799cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1488d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1489d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1490d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 149199cafbc1SBarry Smith }; 1492a30f8f8cSSatish Balay 1493a30f8f8cSSatish Balay 1494a30f8f8cSSatish Balay EXTERN_C_BEGIN 14954a2ae208SSatish Balay #undef __FUNCT__ 14964a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1497be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1498a30f8f8cSSatish Balay { 1499a30f8f8cSSatish Balay PetscFunctionBegin; 1500a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1501a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1502a30f8f8cSSatish Balay PetscFunctionReturn(0); 1503a30f8f8cSSatish Balay } 1504a30f8f8cSSatish Balay EXTERN_C_END 1505a30f8f8cSSatish Balay 1506273d9f13SBarry Smith EXTERN_C_BEGIN 15074a2ae208SSatish Balay #undef __FUNCT__ 1508a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1509be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1510a23d5eceSKris Buschelman { 1511a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1512dfbe8321SBarry Smith PetscErrorCode ierr; 15131302d50aSBarry Smith PetscInt i,mbs,Mbs; 1514a23d5eceSKris Buschelman 1515a23d5eceSKris Buschelman PetscFunctionBegin; 15167adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 15178c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 15188c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1519a23d5eceSKris Buschelman 1520a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1521a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1522a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 152377431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 152477431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1525899cda47SBarry Smith 1526899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 15276148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 15286148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 1529899cda47SBarry Smith 1530a23d5eceSKris Buschelman if (d_nnz) { 1531899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 153277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1533a23d5eceSKris Buschelman } 1534a23d5eceSKris Buschelman } 1535a23d5eceSKris Buschelman if (o_nnz) { 1536899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 153777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1538a23d5eceSKris Buschelman } 1539a23d5eceSKris Buschelman } 1540a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1541a23d5eceSKris Buschelman 1542a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1543899cda47SBarry Smith mbs = B->rmap.n/bs; 1544899cda47SBarry Smith Mbs = B->rmap.N/bs; 1545899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1546899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1547a23d5eceSKris Buschelman } 1548a23d5eceSKris Buschelman 1549899cda47SBarry Smith B->rmap.bs = bs; 1550a23d5eceSKris Buschelman b->bs2 = bs*bs; 1551a23d5eceSKris Buschelman b->mbs = mbs; 1552a23d5eceSKris Buschelman b->nbs = mbs; 1553a23d5eceSKris Buschelman b->Mbs = Mbs; 1554a23d5eceSKris Buschelman b->Nbs = Mbs; 1555a23d5eceSKris Buschelman 1556a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1557899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1558a23d5eceSKris Buschelman } 1559899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1560899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1561a23d5eceSKris Buschelman 1562899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1563899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1564a23d5eceSKris Buschelman 1565f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1566899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 15679c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1568c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 156952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 15709c097c71SKris Buschelman 1571f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1572899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 15734aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1574589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 157552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1576a23d5eceSKris Buschelman 1577a23d5eceSKris Buschelman /* build cache for off array entries formed */ 15787adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1579a23d5eceSKris Buschelman 1580a23d5eceSKris Buschelman PetscFunctionReturn(0); 1581a23d5eceSKris Buschelman } 1582a23d5eceSKris Buschelman EXTERN_C_END 1583a23d5eceSKris Buschelman 15840bad9183SKris Buschelman /*MC 1585fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 15860bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 15870bad9183SKris Buschelman 15880bad9183SKris Buschelman Options Database Keys: 15890bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 15900bad9183SKris Buschelman 15910bad9183SKris Buschelman Level: beginner 15920bad9183SKris Buschelman 15930bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 15940bad9183SKris Buschelman M*/ 15950bad9183SKris Buschelman 1596a23d5eceSKris Buschelman EXTERN_C_BEGIN 1597a23d5eceSKris Buschelman #undef __FUNCT__ 15984a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1599be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1600b5df2d14SHong Zhang { 1601b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1602dfbe8321SBarry Smith PetscErrorCode ierr; 1603b5df2d14SHong Zhang PetscTruth flg; 1604b5df2d14SHong Zhang 1605b5df2d14SHong Zhang PetscFunctionBegin; 1606b5df2d14SHong Zhang 160738f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1608b0a32e0cSBarry Smith B->data = (void*)b; 1609b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1610b5df2d14SHong Zhang 1611b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1612b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1613b5df2d14SHong Zhang B->mapping = 0; 1614b5df2d14SHong Zhang B->factor = 0; 1615b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1616b5df2d14SHong Zhang 1617b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16187adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16197adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1620b5df2d14SHong Zhang 1621b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1622899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1623b5df2d14SHong Zhang 1624b5df2d14SHong Zhang /* build cache for off array entries formed */ 16257adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1626b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1627b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1628b5df2d14SHong Zhang b->garray = PETSC_NULL; 1629b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1630b5df2d14SHong Zhang 1631b5df2d14SHong Zhang /* stuff used in block assembly */ 1632b5df2d14SHong Zhang b->barray = 0; 1633b5df2d14SHong Zhang 1634b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1635b5df2d14SHong Zhang b->lvec = 0; 1636b5df2d14SHong Zhang b->Mvctx = 0; 163740781036SHong Zhang b->slvec0 = 0; 163840781036SHong Zhang b->slvec0b = 0; 163940781036SHong Zhang b->slvec1 = 0; 164040781036SHong Zhang b->slvec1a = 0; 164140781036SHong Zhang b->slvec1b = 0; 164240781036SHong Zhang b->sMvctx = 0; 1643b5df2d14SHong Zhang 1644b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1645b5df2d14SHong Zhang b->rowindices = 0; 1646b5df2d14SHong Zhang b->rowvalues = 0; 1647b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1648b5df2d14SHong Zhang 1649b5df2d14SHong Zhang /* hash table stuff */ 1650b5df2d14SHong Zhang b->ht = 0; 1651b5df2d14SHong Zhang b->hd = 0; 1652b5df2d14SHong Zhang b->ht_size = 0; 1653b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1654b5df2d14SHong Zhang b->ht_fact = 0; 1655b5df2d14SHong Zhang b->ht_total_ct = 0; 1656b5df2d14SHong Zhang b->ht_insert_ct = 0; 1657b5df2d14SHong Zhang 165859ffdab8SBarry Smith b->in_loc = 0; 165959ffdab8SBarry Smith b->v_loc = 0; 166059ffdab8SBarry Smith b->n_loc = 0; 16617adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 16628c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1663b5df2d14SHong Zhang if (flg) { 1664f6275e2eSBarry Smith PetscReal fact = 1.39; 16654e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 16668c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1667b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1668b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 16691e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1670b5df2d14SHong Zhang } 16718c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 16728c07d4e3SBarry Smith 1673b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1674b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1675b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1676b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1677b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1678b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1679b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1680b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1681b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1682a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1683a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1684a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 168523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 168623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 168723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 168823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 168917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1690b5df2d14SHong Zhang PetscFunctionReturn(0); 1691b5df2d14SHong Zhang } 1692273d9f13SBarry Smith EXTERN_C_END 1693b5df2d14SHong Zhang 1694209238afSKris Buschelman /*MC 1695002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1696209238afSKris Buschelman 1697209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1698209238afSKris Buschelman and MATMPISBAIJ otherwise. 1699209238afSKris Buschelman 1700209238afSKris Buschelman Options Database Keys: 1701209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1702209238afSKris Buschelman 1703209238afSKris Buschelman Level: beginner 1704209238afSKris Buschelman 1705209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1706209238afSKris Buschelman M*/ 1707209238afSKris Buschelman 1708209238afSKris Buschelman EXTERN_C_BEGIN 1709209238afSKris Buschelman #undef __FUNCT__ 1710209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1711be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1712dfbe8321SBarry Smith { 17136849ba73SBarry Smith PetscErrorCode ierr; 17141302d50aSBarry Smith PetscMPIInt size; 1715209238afSKris Buschelman 1716209238afSKris Buschelman PetscFunctionBegin; 17177adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1718209238afSKris Buschelman if (size == 1) { 1719209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1720209238afSKris Buschelman } else { 1721209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1722209238afSKris Buschelman } 1723209238afSKris Buschelman PetscFunctionReturn(0); 1724209238afSKris Buschelman } 1725209238afSKris Buschelman EXTERN_C_END 1726209238afSKris Buschelman 17274a2ae208SSatish Balay #undef __FUNCT__ 17284a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1729b5df2d14SHong Zhang /*@C 1730b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1731b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1732b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1733b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang Collective on Mat 1736b5df2d14SHong Zhang 1737b5df2d14SHong Zhang Input Parameters: 1738b5df2d14SHong Zhang + A - the matrix 1739b5df2d14SHong Zhang . bs - size of blockk 1740b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1741b5df2d14SHong Zhang submatrix (same for all local rows) 1742b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17436d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17446d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17456d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1746b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1747b5df2d14SHong Zhang submatrix (same for all local rows). 1748b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1749b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1750b5df2d14SHong Zhang each block row) or PETSC_NULL. 1751b5df2d14SHong Zhang 1752b5df2d14SHong Zhang 1753b5df2d14SHong Zhang Options Database Keys: 1754b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1755b5df2d14SHong Zhang block calculations (much slower) 1756b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1757b5df2d14SHong Zhang 1758b5df2d14SHong Zhang Notes: 1759b5df2d14SHong Zhang 1760b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1761b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1762b5df2d14SHong Zhang 176349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 176449a6f317SBarry Smith 1765b5df2d14SHong Zhang Storage Information: 1766b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1767b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1768b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1769b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1772b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1773b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1774b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1775b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1776b5df2d14SHong Zhang 1777aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1778aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1779aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1780aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1781aa95bbe8SBarry Smith 1782b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1783b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1784b5df2d14SHong Zhang 1785b5df2d14SHong Zhang .vb 1786b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1787b5df2d14SHong Zhang ------------------- 1788b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1789b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1790b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1791b5df2d14SHong Zhang ------------------- 1792b5df2d14SHong Zhang .ve 1793b5df2d14SHong Zhang 1794b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1795b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17966d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17976d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1798b5df2d14SHong Zhang 17996d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18006d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1801b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1802b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1803b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1804b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1805b5df2d14SHong Zhang matrices. 1806b5df2d14SHong Zhang 1807b5df2d14SHong Zhang Level: intermediate 1808b5df2d14SHong Zhang 1809b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1810b5df2d14SHong Zhang 1811b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1812b5df2d14SHong Zhang @*/ 1813be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1814b5df2d14SHong Zhang { 18151302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1816b5df2d14SHong Zhang 1817b5df2d14SHong Zhang PetscFunctionBegin; 1818a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1819a23d5eceSKris Buschelman if (f) { 1820a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1821b5df2d14SHong Zhang } 1822b5df2d14SHong Zhang PetscFunctionReturn(0); 1823b5df2d14SHong Zhang } 1824b5df2d14SHong Zhang 18254a2ae208SSatish Balay #undef __FUNCT__ 18264a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1827a30f8f8cSSatish Balay /*@C 1828a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1829a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1830a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1831a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1832a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1833a30f8f8cSSatish Balay 1834a30f8f8cSSatish Balay Collective on MPI_Comm 1835a30f8f8cSSatish Balay 1836a30f8f8cSSatish Balay Input Parameters: 1837a30f8f8cSSatish Balay + comm - MPI communicator 1838a30f8f8cSSatish Balay . bs - size of blockk 1839a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1840a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1841a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1842a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1843a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1844a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1845a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1846a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1847a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1848a30f8f8cSSatish Balay submatrix (same for all local rows) 1849a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 18506d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 18516d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 18526d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1853a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1854a30f8f8cSSatish Balay submatrix (same for all local rows). 1855a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1856a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1857a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1858a30f8f8cSSatish Balay 1859a30f8f8cSSatish Balay Output Parameter: 1860a30f8f8cSSatish Balay . A - the matrix 1861a30f8f8cSSatish Balay 1862a30f8f8cSSatish Balay Options Database Keys: 1863a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1864a30f8f8cSSatish Balay block calculations (much slower) 1865a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1866a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1867a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1868a30f8f8cSSatish Balay 1869175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1870175b88e8SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely 1871175b88e8SBarry Smith true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles. 1872175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1873175b88e8SBarry Smith 1874a30f8f8cSSatish Balay Notes: 1875d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 18766d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1877d1be2dadSMatthew Knepley 1878a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1879a30f8f8cSSatish Balay (possibly both). 1880a30f8f8cSSatish Balay 1881a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1882a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1883a30f8f8cSSatish Balay 188449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 188549a6f317SBarry Smith 1886a30f8f8cSSatish Balay Storage Information: 1887a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1888a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1889a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1890a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1891a30f8f8cSSatish Balay 1892a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1893a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1894a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1895a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1896a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1897a30f8f8cSSatish Balay 1898a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1899a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1900a30f8f8cSSatish Balay 1901a30f8f8cSSatish Balay .vb 1902a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1903a30f8f8cSSatish Balay ------------------- 1904a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1905a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1906a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1907a30f8f8cSSatish Balay ------------------- 1908a30f8f8cSSatish Balay .ve 1909a30f8f8cSSatish Balay 1910a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1911a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19126d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19136d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1914a30f8f8cSSatish Balay 19156d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19166d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1917a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1918a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1919a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1920a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1921a30f8f8cSSatish Balay matrices. 1922a30f8f8cSSatish Balay 1923a30f8f8cSSatish Balay Level: intermediate 1924a30f8f8cSSatish Balay 1925a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1926a30f8f8cSSatish Balay 1927a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1928a30f8f8cSSatish Balay @*/ 1929a30f8f8cSSatish Balay 1930be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1931a30f8f8cSSatish Balay { 19326849ba73SBarry Smith PetscErrorCode ierr; 19331302d50aSBarry Smith PetscMPIInt size; 1934a30f8f8cSSatish Balay 1935a30f8f8cSSatish Balay PetscFunctionBegin; 1936f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1937f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1938273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1939273d9f13SBarry Smith if (size > 1) { 1940b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1941b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1942273d9f13SBarry Smith } else { 1943273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1944273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1945273d9f13SBarry Smith } 1946a30f8f8cSSatish Balay PetscFunctionReturn(0); 1947a30f8f8cSSatish Balay } 1948a30f8f8cSSatish Balay 1949a30f8f8cSSatish Balay 19504a2ae208SSatish Balay #undef __FUNCT__ 19514a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 19526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1953a30f8f8cSSatish Balay { 1954a30f8f8cSSatish Balay Mat mat; 1955a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1956dfbe8321SBarry Smith PetscErrorCode ierr; 1957899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 1958387bc808SHong Zhang PetscScalar *array; 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay PetscFunctionBegin; 1961a30f8f8cSSatish Balay *newmat = 0; 19627adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 1963899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 19647adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 19651d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 19667adad957SLisandro Dalcin ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 19677adad957SLisandro Dalcin ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 1968e1b6402fSHong Zhang 196982327fa8SHong Zhang mat->factor = matin->factor; 1970273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 197182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 19727fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 19737fff6886SHong Zhang 1974b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1975a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1976a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1977a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1978a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1979a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1980a30f8f8cSSatish Balay 1981899cda47SBarry Smith 1982a30f8f8cSSatish Balay a->size = oldmat->size; 1983a30f8f8cSSatish Balay a->rank = oldmat->rank; 1984a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1985a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1986a30f8f8cSSatish Balay a->rowindices = 0; 1987a30f8f8cSSatish Balay a->rowvalues = 0; 1988a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1989a30f8f8cSSatish Balay a->barray = 0; 1990899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 1991899cda47SBarry Smith a->rendbs = oldmat->rendbs; 1992899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 1993899cda47SBarry Smith a->cendbs = oldmat->cendbs; 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay /* hash table stuff */ 1996a30f8f8cSSatish Balay a->ht = 0; 1997a30f8f8cSSatish Balay a->hd = 0; 1998a30f8f8cSSatish Balay a->ht_size = 0; 1999a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2000a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2001a30f8f8cSSatish Balay a->ht_total_ct = 0; 2002a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2003a30f8f8cSSatish Balay 2004899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 20057adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 20067adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2007a30f8f8cSSatish Balay if (oldmat->colmap) { 2008a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2009a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2010a30f8f8cSSatish Balay #else 20111302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 201252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20131302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2014a30f8f8cSSatish Balay #endif 2015a30f8f8cSSatish Balay } else a->colmap = 0; 2016387bc808SHong Zhang 2017a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20181302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 201952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20201302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2021a30f8f8cSSatish Balay } else a->garray = 0; 2022a30f8f8cSSatish Balay 2023a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 202452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2025a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 202652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 202782327fa8SHong Zhang 202882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 202952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 203082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 203152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2032387bc808SHong Zhang 2033387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 20341ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2035387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2036387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 20371ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 20381ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2039387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 20401ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 204152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 204252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 204352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 204452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 204552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2046387bc808SHong Zhang 2047387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2048387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2049387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 205052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 205182327fa8SHong Zhang 2052a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 205352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2054a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 205552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 20567adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2057a30f8f8cSSatish Balay *newmat = mat; 2058a30f8f8cSSatish Balay PetscFunctionReturn(0); 2059a30f8f8cSSatish Balay } 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay #include "petscsys.h" 2062a30f8f8cSSatish Balay 20634a2ae208SSatish Balay #undef __FUNCT__ 20644a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2065f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2066a30f8f8cSSatish Balay { 2067a30f8f8cSSatish Balay Mat A; 20686849ba73SBarry Smith PetscErrorCode ierr; 206913f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 207087828ca2SBarry Smith PetscScalar *vals,*buf; 2071a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2072a30f8f8cSSatish Balay MPI_Status status; 2073e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 207413f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 20752fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 20761302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 20771302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 20781302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 207913f74950SBarry Smith int fd; 2080a30f8f8cSSatish Balay 2081a30f8f8cSSatish Balay PetscFunctionBegin; 208277925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 20838c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 20848c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2085a30f8f8cSSatish Balay 2086a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2087a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2088a30f8f8cSSatish Balay if (!rank) { 2089b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2090a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2091552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2092a30f8f8cSSatish Balay if (header[3] < 0) { 209329bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2094a30f8f8cSSatish Balay } 2095a30f8f8cSSatish Balay } 2096a30f8f8cSSatish Balay 2097a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2098a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2099a30f8f8cSSatish Balay 210029bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2101a30f8f8cSSatish Balay 2102a30f8f8cSSatish Balay /* 2103a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2104a30f8f8cSSatish Balay divisible by the blocksize 2105a30f8f8cSSatish Balay */ 2106a30f8f8cSSatish Balay Mbs = M/bs; 2107a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2108a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2109a30f8f8cSSatish Balay else Mbs++; 2110a30f8f8cSSatish Balay if (extra_rows &&!rank) { 21111e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2112a30f8f8cSSatish Balay } 2113a30f8f8cSSatish Balay 2114a30f8f8cSSatish Balay /* determine ownership of all rows */ 2115a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2116a30f8f8cSSatish Balay m = mbs*bs; 2117a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2118a30f8f8cSSatish Balay browners = rowners + size + 1; 2119e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2120e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2121a30f8f8cSSatish Balay rowners[0] = 0; 2122a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2123a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2124a30f8f8cSSatish Balay rstart = rowners[rank]; 2125a30f8f8cSSatish Balay rend = rowners[rank+1]; 2126a30f8f8cSSatish Balay 2127a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 21282fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2129a30f8f8cSSatish Balay if (!rank) { 21301302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2131a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2133a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2134a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2135a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2136a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2137a30f8f8cSSatish Balay } else { 2138a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay } 2140a30f8f8cSSatish Balay 21410222edb1SHong Zhang if (!rank) { /* procs[0] */ 2142a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 21431302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 21441302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2145a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2146a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2147a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2148a30f8f8cSSatish Balay } 2149a30f8f8cSSatish Balay } 2150a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay 2152a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2153a30f8f8cSSatish Balay maxnz = 0; 2154a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2155a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2156a30f8f8cSSatish Balay } 21571302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2158a30f8f8cSSatish Balay 2159a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2160a30f8f8cSSatish Balay nz = procsnz[0]; 21611302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2162a30f8f8cSSatish Balay mycols = ibuf; 2163a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2164a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2165a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2166a30f8f8cSSatish Balay 2167a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2168a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2169a30f8f8cSSatish Balay nz = procsnz[i]; 2170a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2171a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay } 2173a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2174a30f8f8cSSatish Balay if (size != 1) { 2175a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2176a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2178a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay } 2180a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21810222edb1SHong Zhang } else { /* procs[i], i>0 */ 2182a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2183a30f8f8cSSatish Balay nz = 0; 2184a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2185a30f8f8cSSatish Balay nz += locrowlens[i]; 2186a30f8f8cSSatish Balay } 21871302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay mycols = ibuf; 2189a30f8f8cSSatish Balay /* receive message of column indices*/ 2190a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2191a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 219229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2193a30f8f8cSSatish Balay } 2194a30f8f8cSSatish Balay 2195a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 21961302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 21981302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 21991302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2200a30f8f8cSSatish Balay masked1 = mask + Mbs; 2201a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2202a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2203a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2204a30f8f8cSSatish Balay dcount = 0; 2205a30f8f8cSSatish Balay odcount = 0; 2206a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2207a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2208a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22090222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2210a30f8f8cSSatish Balay if (!mask[tmp]) { 2211a30f8f8cSSatish Balay mask[tmp] = 1; 22120222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22130222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2214a30f8f8cSSatish Balay } 2215a30f8f8cSSatish Balay } 2216a30f8f8cSSatish Balay rowcount++; 2217a30f8f8cSSatish Balay } 2218a30f8f8cSSatish Balay 22190222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22200222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2221a30f8f8cSSatish Balay 2222a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2223a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2224a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay 2227a30f8f8cSSatish Balay /* create our matrix */ 2228f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2229f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 223022191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 223122191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2232a30f8f8cSSatish Balay 2233a30f8f8cSSatish Balay if (!rank) { 223487828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2235a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2236a30f8f8cSSatish Balay nz = procsnz[0]; 2237a30f8f8cSSatish Balay vals = buf; 2238a30f8f8cSSatish Balay mycols = ibuf; 2239a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2240a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2241a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2242a30f8f8cSSatish Balay 2243a30f8f8cSSatish Balay /* insert into matrix */ 2244a30f8f8cSSatish Balay jj = rstart*bs; 2245a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22467e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2247a30f8f8cSSatish Balay mycols += locrowlens[i]; 2248a30f8f8cSSatish Balay vals += locrowlens[i]; 2249a30f8f8cSSatish Balay jj++; 2250a30f8f8cSSatish Balay } 22517e06b45fSHong Zhang 2252a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2253a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2254a30f8f8cSSatish Balay nz = procsnz[i]; 2255a30f8f8cSSatish Balay vals = buf; 2256a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 22577adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay } 2259a30f8f8cSSatish Balay /* the last proc */ 2260a30f8f8cSSatish Balay if (size != 1){ 2261a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2262a30f8f8cSSatish Balay vals = buf; 2263a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2264a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 22657adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay } 2267a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22687e06b45fSHong Zhang 2269a30f8f8cSSatish Balay } else { 2270a30f8f8cSSatish Balay /* receive numeric values */ 227187828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay 2273a30f8f8cSSatish Balay /* receive message of values*/ 2274a30f8f8cSSatish Balay vals = buf; 2275a30f8f8cSSatish Balay mycols = ibuf; 22767adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2277a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 227829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2279a30f8f8cSSatish Balay 2280a30f8f8cSSatish Balay /* insert into matrix */ 2281a30f8f8cSSatish Balay jj = rstart*bs; 2282a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2283a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2284a30f8f8cSSatish Balay mycols += locrowlens[i]; 2285a30f8f8cSSatish Balay vals += locrowlens[i]; 2286a30f8f8cSSatish Balay jj++; 2287a30f8f8cSSatish Balay } 2288a30f8f8cSSatish Balay } 22897e06b45fSHong Zhang 2290a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2291a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2292a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2293a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2294a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2295a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2296a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2297a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 229822191285SKris Buschelman *newmat = A; 2299a30f8f8cSSatish Balay PetscFunctionReturn(0); 2300a30f8f8cSSatish Balay } 2301a30f8f8cSSatish Balay 23024a2ae208SSatish Balay #undef __FUNCT__ 23034a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2304dcf5cc72SBarry Smith /*XXXXX@ 2305a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2306a30f8f8cSSatish Balay 2307a30f8f8cSSatish Balay Input Parameters: 2308a30f8f8cSSatish Balay . mat - the matrix 2309a30f8f8cSSatish Balay . fact - factor 2310a30f8f8cSSatish Balay 2311a30f8f8cSSatish Balay Collective on Mat 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay Level: advanced 2314a30f8f8cSSatish Balay 2315a30f8f8cSSatish Balay Notes: 2316a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2317a30f8f8cSSatish Balay 2318a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay .seealso: MatSetOption() 2321dcf5cc72SBarry Smith @XXXXX*/ 2322dcf5cc72SBarry Smith 232324d5174aSHong Zhang 23244a2ae208SSatish Balay #undef __FUNCT__ 2325985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2326985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 232724d5174aSHong Zhang { 232824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2329f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2330ca54ac64SHong Zhang PetscReal atmp; 233187828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2332dfbe8321SBarry Smith PetscErrorCode ierr; 23331302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 23341302d50aSBarry Smith PetscMPIInt rank,size; 23351302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 233687828ca2SBarry Smith PetscScalar *va; 23378a1c53f2SBarry Smith MatScalar *ba; 2338f4c0e9e4SHong Zhang MPI_Status stat; 233924d5174aSHong Zhang 234024d5174aSHong Zhang PetscFunctionBegin; 2341985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2342985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 23431ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2344f4c0e9e4SHong Zhang 23457adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 23467adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2347f4c0e9e4SHong Zhang 2348899cda47SBarry Smith bs = A->rmap.bs; 2349f4c0e9e4SHong Zhang mbs = a->mbs; 2350f4c0e9e4SHong Zhang Mbs = a->Mbs; 2351f4c0e9e4SHong Zhang ba = b->a; 2352f4c0e9e4SHong Zhang bi = b->i; 2353f4c0e9e4SHong Zhang bj = b->j; 2354f4c0e9e4SHong Zhang 2355f4c0e9e4SHong Zhang /* find ownerships */ 2356899cda47SBarry Smith rowners_bs = A->rmap.range; 2357f4c0e9e4SHong Zhang 2358f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 235982502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2360ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2361f4c0e9e4SHong Zhang 2362f4c0e9e4SHong Zhang /* row_max for B */ 2363b8475685SHong Zhang if (rank != size-1){ 2364f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2365f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2366f4c0e9e4SHong Zhang brow = bs*i; 2367f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2368f4c0e9e4SHong Zhang bcol = bs*(*bj); 2369f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2370ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 237104d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2372f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2373f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2374ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2375ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2376f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2377f4c0e9e4SHong Zhang } 2378f4c0e9e4SHong Zhang } 2379f4c0e9e4SHong Zhang bj++; 2380f4c0e9e4SHong Zhang } 2381f4c0e9e4SHong Zhang } 2382f4c0e9e4SHong Zhang 2383f4c0e9e4SHong Zhang /* send values to its owners */ 2384f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2385f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2386ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 23877adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2388ca54ac64SHong Zhang } 2389f4c0e9e4SHong Zhang } 2390f4c0e9e4SHong Zhang 2391f4c0e9e4SHong Zhang /* receive values */ 2392ca54ac64SHong Zhang if (rank){ 2393f4c0e9e4SHong Zhang rvalues = work; 2394ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2395f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 23967adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2397f4c0e9e4SHong Zhang /* process values */ 2398f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2399ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2400f4c0e9e4SHong Zhang } 2401f4c0e9e4SHong Zhang } 2402ca54ac64SHong Zhang } 2403f4c0e9e4SHong Zhang 24041ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2405ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 240624d5174aSHong Zhang PetscFunctionReturn(0); 240724d5174aSHong Zhang } 24082798e883SHong Zhang 24092798e883SHong Zhang #undef __FUNCT__ 24102798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24111302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24122798e883SHong Zhang { 24132798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2414dfbe8321SBarry Smith PetscErrorCode ierr; 2415899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2416efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2417ffe4fb16SHong Zhang Vec bb1; 2418ffe4fb16SHong Zhang 2419ffe4fb16SHong Zhang PetscFunctionBegin; 242077431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2421ffe4fb16SHong Zhang if (bs > 1) 2422ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2423ffe4fb16SHong Zhang 2424ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2425ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2426ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2427ffe4fb16SHong Zhang its--; 2428ffe4fb16SHong Zhang } 2429ffe4fb16SHong Zhang 2430ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2431ffe4fb16SHong Zhang while (its--){ 2432ffe4fb16SHong Zhang 2433ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2434ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2435ffe4fb16SHong Zhang 2436ffe4fb16SHong Zhang /* copy xx into slvec0a */ 24371ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 24381ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2439ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24401ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2441ffe4fb16SHong Zhang 2442efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2443ffe4fb16SHong Zhang 2444ffe4fb16SHong Zhang /* copy bb into slvec1a */ 24451ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 24461ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2447ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24481ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2449ffe4fb16SHong Zhang 2450ffe4fb16SHong Zhang /* set slvec1b = 0 */ 24512dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2452ffe4fb16SHong Zhang 2453ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 24541ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 24551ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2456ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2457ffe4fb16SHong Zhang 2458ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2459ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2460ffe4fb16SHong Zhang 2461ffe4fb16SHong Zhang /* local diagonal sweep */ 2462ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2463ffe4fb16SHong Zhang } 2464ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2465ffe4fb16SHong Zhang } else { 2466ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2467ffe4fb16SHong Zhang } 2468ffe4fb16SHong Zhang PetscFunctionReturn(0); 2469ffe4fb16SHong Zhang } 2470ffe4fb16SHong Zhang 2471ffe4fb16SHong Zhang #undef __FUNCT__ 2472ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 24731302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2474ffe4fb16SHong Zhang { 2475ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2476dfbe8321SBarry Smith PetscErrorCode ierr; 24772798e883SHong Zhang Vec lvec1,bb1; 24782798e883SHong Zhang 24792798e883SHong Zhang PetscFunctionBegin; 248077431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2481899cda47SBarry Smith if (matin->rmap.bs > 1) 24822798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24832798e883SHong Zhang 2484c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24852798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2486bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 24872798e883SHong Zhang its--; 24882798e883SHong Zhang } 24892798e883SHong Zhang 24902798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24912798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24922798e883SHong Zhang while (its--){ 2493ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 24942798e883SHong Zhang 24952798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 24962798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2497efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 24982798e883SHong Zhang 2499ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25002798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2501ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25022798e883SHong Zhang 25032798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2504efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25052798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25062798e883SHong Zhang 2507ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25082798e883SHong Zhang 2509c14dc6b6SHong Zhang /* diagonal sweep */ 2510bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25112798e883SHong Zhang } 25122798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25132798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2514c14dc6b6SHong Zhang } else { 2515c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2516c14dc6b6SHong Zhang } 25172798e883SHong Zhang PetscFunctionReturn(0); 25182798e883SHong Zhang } 25192798e883SHong Zhang 2520