xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision e6dd01d471f4c3672c9ec1f9e228b968a37114b8)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6f3da1532SBarry Smith #include "petscblaslapack.h"
7a30f8f8cSSatish Balay 
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay EXTERN_C_BEGIN
254a2ae208SSatish Balay #undef __FUNCT__
264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
28a30f8f8cSSatish Balay {
29f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
30dfbe8321SBarry Smith   PetscErrorCode ierr;
31a30f8f8cSSatish Balay 
32a30f8f8cSSatish Balay   PetscFunctionBegin;
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   PetscFunctionReturn(0);
36a30f8f8cSSatish Balay }
37a30f8f8cSSatish Balay EXTERN_C_END
38a30f8f8cSSatish Balay 
39a30f8f8cSSatish Balay EXTERN_C_BEGIN
404a2ae208SSatish Balay #undef __FUNCT__
414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
43a30f8f8cSSatish Balay {
44f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
45dfbe8321SBarry Smith   PetscErrorCode ierr;
46a30f8f8cSSatish Balay 
47a30f8f8cSSatish Balay   PetscFunctionBegin;
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
50a30f8f8cSSatish Balay   PetscFunctionReturn(0);
51a30f8f8cSSatish Balay }
52a30f8f8cSSatish Balay EXTERN_C_END
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay 
55a30f8f8cSSatish Balay #define CHUNKSIZE  10
56a30f8f8cSSatish Balay 
57a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
58a30f8f8cSSatish Balay { \
59a30f8f8cSSatish Balay  \
60a30f8f8cSSatish Balay     brow = row/bs;  \
61a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
62a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
63a30f8f8cSSatish Balay       bcol = col/bs; \
64a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
65a30f8f8cSSatish Balay       low = 0; high = nrow; \
66a30f8f8cSSatish Balay       while (high-low > 3) { \
67a30f8f8cSSatish Balay         t = (low+high)/2; \
68a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
69a30f8f8cSSatish Balay         else              low  = t; \
70a30f8f8cSSatish Balay       } \
71a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
72a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
73a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
74a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
75a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
76a30f8f8cSSatish Balay           else                    *bap  = value;  \
77a30f8f8cSSatish Balay           goto a_noinsert; \
78a30f8f8cSSatish Balay         } \
79a30f8f8cSSatish Balay       } \
80a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
81085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
82421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
83a30f8f8cSSatish Balay       N = nrow++ - 1;  \
84a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
85a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
86a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
87a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
88a30f8f8cSSatish Balay       } \
89a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
90a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
91a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
92a30f8f8cSSatish Balay       a_noinsert:; \
93a30f8f8cSSatish Balay     ailen[brow] = nrow; \
94a30f8f8cSSatish Balay }
95e5e170daSBarry Smith 
96a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
97a30f8f8cSSatish Balay { \
98a30f8f8cSSatish Balay     brow = row/bs;  \
99a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
100a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
101a30f8f8cSSatish Balay       bcol = col/bs; \
102a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
103a30f8f8cSSatish Balay       low = 0; high = nrow; \
104a30f8f8cSSatish Balay       while (high-low > 3) { \
105a30f8f8cSSatish Balay         t = (low+high)/2; \
106a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
107a30f8f8cSSatish Balay         else              low  = t; \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
110a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
111a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
112a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
113a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
114a30f8f8cSSatish Balay           else                    *bap  = value;  \
115a30f8f8cSSatish Balay           goto b_noinsert; \
116a30f8f8cSSatish Balay         } \
117a30f8f8cSSatish Balay       } \
118a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
119085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
120421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
121a30f8f8cSSatish Balay       N = nrow++ - 1;  \
122a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
123a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
124a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
125a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
126a30f8f8cSSatish Balay       } \
127a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
128a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
129a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
130a30f8f8cSSatish Balay       b_noinsert:; \
131a30f8f8cSSatish Balay     bilen[brow] = nrow; \
132a30f8f8cSSatish Balay }
133a30f8f8cSSatish Balay 
134a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
135a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
136a30f8f8cSSatish Balay */
1374a2ae208SSatish Balay #undef __FUNCT__
138dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
139dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
140a30f8f8cSSatish Balay {
141a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
142a30f8f8cSSatish Balay   MatScalar      value;
143b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
144dfbe8321SBarry Smith   PetscErrorCode ierr;
1451302d50aSBarry Smith   PetscInt       i,j,row,col;
146d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
147d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
148d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   /* Some Variables required in the macro */
151a30f8f8cSSatish Balay   Mat            A = baij->A;
152a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1531302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
154a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay   Mat            B = baij->B;
157a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1581302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
159a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
160a30f8f8cSSatish Balay 
1611302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1621302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
163a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   /* for stash */
166910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
167910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
168a30f8f8cSSatish Balay 
169a30f8f8cSSatish Balay   PetscFunctionBegin;
17071fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
171a30f8f8cSSatish Balay   if (!baij->donotstash){
17259ffdab8SBarry Smith     if (n > baij->n_loc) {
17359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17759ffdab8SBarry Smith       baij->n_loc = n;
17859ffdab8SBarry Smith     }
17959ffdab8SBarry Smith     in_loc = baij->in_loc;
18059ffdab8SBarry Smith     v_loc  = baij->v_loc;
181a30f8f8cSSatish Balay   }
182a30f8f8cSSatish Balay 
183a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
184a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1852515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
186d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
187a30f8f8cSSatish Balay #endif
188a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
189a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
190a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19201b2bd88SHong Zhang           if (a->ignore_ltriangular){
19301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19401b2bd88SHong Zhang           } else {
1954e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19601b2bd88SHong Zhang           }
19701b2bd88SHong Zhang         }
198a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
199a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
200a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
201a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
202a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
203a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
204a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
205a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2062515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
207d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
208a30f8f8cSSatish Balay #endif
209a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
210a30f8f8cSSatish Balay           if (mat->was_assembled) {
211a30f8f8cSSatish Balay             if (!baij->colmap) {
212653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
213a30f8f8cSSatish Balay             }
214a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
215a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21671730473SSatish Balay             col  = col - 1;
217a30f8f8cSSatish Balay #else
21871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
219a30f8f8cSSatish Balay #endif
220a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
221a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
222a30f8f8cSSatish Balay               col =  in[j];
223a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
224a30f8f8cSSatish Balay               B = baij->B;
225a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
226a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
227a30f8f8cSSatish Balay               ba=b->a;
22871730473SSatish Balay             } else col += in[j]%bs;
229a30f8f8cSSatish Balay           } else col = in[j];
230a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
231a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
232a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
233a30f8f8cSSatish Balay         }
234a30f8f8cSSatish Balay       }
235a30f8f8cSSatish Balay     } else {  /* off processor entry */
236a30f8f8cSSatish Balay       if (!baij->donotstash) {
237a30f8f8cSSatish Balay         n_loc = 0;
238a30f8f8cSSatish Balay         for (j=0; j<n; j++){
239f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
240a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
241a30f8f8cSSatish Balay           if (roworiented) {
242a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
243a30f8f8cSSatish Balay           } else {
244a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
245a30f8f8cSSatish Balay           }
246a30f8f8cSSatish Balay           n_loc++;
247a30f8f8cSSatish Balay         }
248b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
249a30f8f8cSSatish Balay       }
250a30f8f8cSSatish Balay     }
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   PetscFunctionReturn(0);
253a30f8f8cSSatish Balay }
254a30f8f8cSSatish Balay 
2554a2ae208SSatish Balay #undef __FUNCT__
256dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
257dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
258a30f8f8cSSatish Balay {
2590880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
260f15d580aSBarry Smith   const MatScalar *value;
261f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
262f3f98c53SJed Brown   PetscTruth      roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
263dfbe8321SBarry Smith   PetscErrorCode  ierr;
264899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
265899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
266d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2670880e062SHong Zhang 
268a30f8f8cSSatish Balay   PetscFunctionBegin;
2690880e062SHong Zhang   if(!barray) {
2700880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2710880e062SHong Zhang     baij->barray = barray;
2720880e062SHong Zhang   }
2730880e062SHong Zhang 
2740880e062SHong Zhang   if (roworiented) {
2750880e062SHong Zhang     stepval = (n-1)*bs;
2760880e062SHong Zhang   } else {
2770880e062SHong Zhang     stepval = (m-1)*bs;
2780880e062SHong Zhang   }
2790880e062SHong Zhang   for (i=0; i<m; i++) {
2800880e062SHong Zhang     if (im[i] < 0) continue;
2812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2830880e062SHong Zhang #endif
2840880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2850880e062SHong Zhang       row = im[i] - rstart;
2860880e062SHong Zhang       for (j=0; j<n; j++) {
287f3f98c53SJed Brown         if (im[i] > in[j]) {
288f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
289f3f98c53SJed Brown           else SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
290f3f98c53SJed Brown         }
2910880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2920880e062SHong Zhang         if ((roworiented) && (n == 1)) {
293f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2940880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
295f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2960880e062SHong Zhang         } else { /* Here a copy is required */
2970880e062SHong Zhang           if (roworiented) {
2980880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2990880e062SHong Zhang           } else {
3000880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3010880e062SHong Zhang           }
3020880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3030880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3040880e062SHong Zhang               *barray++  = *value++;
3050880e062SHong Zhang             }
3060880e062SHong Zhang           }
3070880e062SHong Zhang           barray -=bs2;
3080880e062SHong Zhang         }
3090880e062SHong Zhang 
3100880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3110880e062SHong Zhang           col  = in[j] - cstart;
3120880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3130880e062SHong Zhang         }
3140880e062SHong Zhang         else if (in[j] < 0) continue;
3152515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31677431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3170880e062SHong Zhang #endif
3180880e062SHong Zhang         else {
3190880e062SHong Zhang           if (mat->was_assembled) {
3200880e062SHong Zhang             if (!baij->colmap) {
321653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3220880e062SHong Zhang             }
3230880e062SHong Zhang 
3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3250880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3261302d50aSBarry Smith             { PetscInt data;
3270880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3280880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3290880e062SHong Zhang             }
3300880e062SHong Zhang #else
3310880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3320880e062SHong Zhang #endif
3330880e062SHong Zhang #endif
3340880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3350880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3360880e062SHong Zhang             col  = (col - 1)/bs;
3370880e062SHong Zhang #else
3380880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3390880e062SHong Zhang #endif
3400880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3410880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3420880e062SHong Zhang               col =  in[j];
3430880e062SHong Zhang             }
3440880e062SHong Zhang           }
3450880e062SHong Zhang           else col = in[j];
346e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3470880e062SHong Zhang         }
3480880e062SHong Zhang       }
3490880e062SHong Zhang     } else {
3500880e062SHong Zhang       if (!baij->donotstash) {
3510880e062SHong Zhang         if (roworiented) {
3520880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         } else {
3540880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3550880e062SHong Zhang         }
3560880e062SHong Zhang       }
3570880e062SHong Zhang     }
3580880e062SHong Zhang   }
3590880e062SHong Zhang   PetscFunctionReturn(0);
360a30f8f8cSSatish Balay }
361a30f8f8cSSatish Balay 
3624a2ae208SSatish Balay #undef __FUNCT__
3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
365a30f8f8cSSatish Balay {
366f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3676849ba73SBarry Smith   PetscErrorCode ierr;
368d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
369d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
370a30f8f8cSSatish Balay 
371a30f8f8cSSatish Balay   PetscFunctionBegin;
372a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
37397e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
374d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
375a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
376a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
377a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37897e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
379d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
380a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
381a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
382c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
383a30f8f8cSSatish Balay         } else {
384a30f8f8cSSatish Balay           if (!baij->colmap) {
385653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
386a30f8f8cSSatish Balay           }
387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
388a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
389a30f8f8cSSatish Balay           data --;
390a30f8f8cSSatish Balay #else
391a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
392a30f8f8cSSatish Balay #endif
393a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
394a30f8f8cSSatish Balay           else {
395a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
396e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
397a30f8f8cSSatish Balay           }
398a30f8f8cSSatish Balay         }
399a30f8f8cSSatish Balay       }
400a30f8f8cSSatish Balay     } else {
40129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
402a30f8f8cSSatish Balay     }
403a30f8f8cSSatish Balay   }
404a30f8f8cSSatish Balay  PetscFunctionReturn(0);
405a30f8f8cSSatish Balay }
406a30f8f8cSSatish Balay 
4074a2ae208SSatish Balay #undef __FUNCT__
4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
410a30f8f8cSSatish Balay {
411a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
412dfbe8321SBarry Smith   PetscErrorCode ierr;
413a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
414a30f8f8cSSatish Balay 
415a30f8f8cSSatish Balay   PetscFunctionBegin;
416a30f8f8cSSatish Balay   if (baij->size == 1) {
417a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
418a30f8f8cSSatish Balay   } else {
419a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
420f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
423a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4257adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
426a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
427a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4280b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4290b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4300b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4310b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
432899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
433d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4340b8dc8d2SHong Zhang       MatScalar    *v;
4350b8dc8d2SHong Zhang 
43674ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
437d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4380b8dc8d2SHong Zhang       /* Amat */
4390b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4420b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4440b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4450b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4460b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4470b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4490b8dc8d2SHong Zhang               /* non-diagonal block */
4500b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4510b8dc8d2SHong Zhang             }
4520b8dc8d2SHong Zhang           }
4530b8dc8d2SHong Zhang         }
4540b8dc8d2SHong Zhang       }
4550b8dc8d2SHong Zhang       /* Bmat */
4560b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4570b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4580b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4590b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4600b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4610b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4620b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4630b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4640b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4650b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4660b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4670b8dc8d2SHong Zhang             }
4680b8dc8d2SHong Zhang           }
4690b8dc8d2SHong Zhang         }
4700b8dc8d2SHong Zhang       }
471d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4720b8dc8d2SHong Zhang       *norm = 0.0;
473d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4740b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4750b8dc8d2SHong Zhang       }
47674ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
477a30f8f8cSSatish Balay     } else {
47829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
479a30f8f8cSSatish Balay     }
480a30f8f8cSSatish Balay   }
481a30f8f8cSSatish Balay   PetscFunctionReturn(0);
482a30f8f8cSSatish Balay }
483a30f8f8cSSatish Balay 
4844a2ae208SSatish Balay #undef __FUNCT__
4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
487a30f8f8cSSatish Balay {
488a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
489dfbe8321SBarry Smith   PetscErrorCode ierr;
4901302d50aSBarry Smith   PetscInt       nstash,reallocs;
491a30f8f8cSSatish Balay   InsertMode     addv;
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   PetscFunctionBegin;
494a30f8f8cSSatish Balay   if (baij->donotstash) {
495a30f8f8cSSatish Balay     PetscFunctionReturn(0);
496a30f8f8cSSatish Balay   }
497a30f8f8cSSatish Balay 
498a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4997adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
500a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
50129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
502a30f8f8cSSatish Balay   }
503a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
504a30f8f8cSSatish Balay 
505d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5081e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
509a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5101e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
511a30f8f8cSSatish Balay   PetscFunctionReturn(0);
512a30f8f8cSSatish Balay }
513a30f8f8cSSatish Balay 
5144a2ae208SSatish Balay #undef __FUNCT__
5154a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
516dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
517a30f8f8cSSatish Balay {
518a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
519a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5206849ba73SBarry Smith   PetscErrorCode ierr;
52113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
522e44c0bd4SBarry Smith   PetscInt       *row,*col;
523e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52413f74950SBarry Smith   PetscMPIInt    n;
525a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
526a30f8f8cSSatish Balay   MatScalar      *val;
527a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
528a30f8f8cSSatish Balay 
52991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
530a30f8f8cSSatish Balay   PetscFunctionBegin;
531a30f8f8cSSatish Balay 
532a30f8f8cSSatish Balay   if (!baij->donotstash) {
533a30f8f8cSSatish Balay     while (1) {
534a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
535a30f8f8cSSatish Balay       if (!flg) break;
536a30f8f8cSSatish Balay 
537a30f8f8cSSatish Balay       for (i=0; i<n;) {
538a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
539a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
540a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
541a30f8f8cSSatish Balay         else       ncols = n-i;
542a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
543dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
544a30f8f8cSSatish Balay         i = j;
545a30f8f8cSSatish Balay       }
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
548a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
549a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
550a30f8f8cSSatish Balay        restore the original flags */
551a30f8f8cSSatish Balay     r1 = baij->roworiented;
552a30f8f8cSSatish Balay     r2 = a->roworiented;
55391c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
554a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
555a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
557a30f8f8cSSatish Balay     while (1) {
558a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
559a30f8f8cSSatish Balay       if (!flg) break;
560a30f8f8cSSatish Balay 
561a30f8f8cSSatish Balay       for (i=0; i<n;) {
562a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
563a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
564a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
565a30f8f8cSSatish Balay         else       ncols = n-i;
566dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         i = j;
568a30f8f8cSSatish Balay       }
569a30f8f8cSSatish Balay     }
570a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
571a30f8f8cSSatish Balay     baij->roworiented = r1;
572a30f8f8cSSatish Balay     a->roworiented    = r2;
57391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
574a30f8f8cSSatish Balay   }
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
577a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
578a30f8f8cSSatish Balay 
579a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
580a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
581a30f8f8cSSatish Balay   /*
582a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
583a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
584a30f8f8cSSatish Balay   */
585a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5867adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
587a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
588c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
589a30f8f8cSSatish Balay     }
590a30f8f8cSSatish Balay   }
591a30f8f8cSSatish Balay 
592a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59340781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
594a30f8f8cSSatish Balay   }
59591c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
596a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
597a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
598a30f8f8cSSatish Balay 
59974ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   baij->rowvalues = 0;
6015222a1afSHong Zhang 
602a30f8f8cSSatish Balay   PetscFunctionReturn(0);
603a30f8f8cSSatish Balay }
604a30f8f8cSSatish Balay 
605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6064a2ae208SSatish Balay #undef __FUNCT__
6074a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6086849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
609a30f8f8cSSatish Balay {
610a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
611dfbe8321SBarry Smith   PetscErrorCode    ierr;
612d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6131302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
615b0a32e0cSBarry Smith   PetscViewer       sviewer;
616f3ef73ceSBarry Smith   PetscViewerFormat format;
617a30f8f8cSSatish Balay 
618a30f8f8cSSatish Balay   PetscFunctionBegin;
61932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
620fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
62132077d6dSBarry Smith   if (iascii) {
622b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
623456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
624a30f8f8cSSatish Balay       MatInfo info;
6257adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
628*e6dd01d4SJed Brown              rank,mat->rmap->N,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
629a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
630*e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
631a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
632*e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
633b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63407d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
635a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63877431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
639a30f8f8cSSatish Balay       PetscFunctionReturn(0);
640c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
641c1490034SHong Zhang       PetscFunctionReturn(0);
642a30f8f8cSSatish Balay     }
643a30f8f8cSSatish Balay   }
644a30f8f8cSSatish Balay 
645a30f8f8cSSatish Balay   if (isdraw) {
646b0a32e0cSBarry Smith     PetscDraw  draw;
647a30f8f8cSSatish Balay     PetscTruth isnull;
648b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
649b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
650a30f8f8cSSatish Balay   }
651a30f8f8cSSatish Balay 
652a30f8f8cSSatish Balay   if (size == 1) {
6537adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
654a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
655a30f8f8cSSatish Balay   } else {
656a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
657a30f8f8cSSatish Balay     Mat          A;
65865d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65965d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
660d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
661a30f8f8cSSatish Balay     MatScalar    *a;
662a30f8f8cSSatish Balay 
663f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6647adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
665a30f8f8cSSatish Balay     if (!rank) {
666f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
667a30f8f8cSSatish Balay     } else {
668f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
669a30f8f8cSSatish Balay     }
670f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
671d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
67252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
673a30f8f8cSSatish Balay 
674a30f8f8cSSatish Balay     /* copy over the A part */
67565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
676a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6771302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
678a30f8f8cSSatish Balay 
679a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
680e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
681a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
682a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
683e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
684a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
685dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
686a30f8f8cSSatish Balay           col++; a += bs;
687a30f8f8cSSatish Balay         }
688a30f8f8cSSatish Balay       }
689a30f8f8cSSatish Balay     }
690a30f8f8cSSatish Balay     /* copy over the B part */
69165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
693a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
694e9f7bc9eSHong Zhang 
695e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
696a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
697a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
698a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
699a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
700799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
701a30f8f8cSSatish Balay           col++; a += bs;
702a30f8f8cSSatish Balay         }
703a30f8f8cSSatish Balay       }
704a30f8f8cSSatish Balay     }
705a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
708a30f8f8cSSatish Balay     /*
709a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
710b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
711a30f8f8cSSatish Balay     */
712b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71365d70643SHong Zhang     if (!rank) {
7147adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
715a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
716a30f8f8cSSatish Balay     }
717b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
718a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
719a30f8f8cSSatish Balay   }
720a30f8f8cSSatish Balay   PetscFunctionReturn(0);
721a30f8f8cSSatish Balay }
722a30f8f8cSSatish Balay 
7234a2ae208SSatish Balay #undef __FUNCT__
7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
726a30f8f8cSSatish Balay {
727dfbe8321SBarry Smith   PetscErrorCode ierr;
72832077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
729a30f8f8cSSatish Balay 
730a30f8f8cSSatish Balay   PetscFunctionBegin;
73132077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
732fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
733b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
734fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73532077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
736a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
737a30f8f8cSSatish Balay   } else {
7381302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
739a30f8f8cSSatish Balay   }
740a30f8f8cSSatish Balay   PetscFunctionReturn(0);
741a30f8f8cSSatish Balay }
742a30f8f8cSSatish Balay 
7434a2ae208SSatish Balay #undef __FUNCT__
7444a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
745dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
746a30f8f8cSSatish Balay {
747a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
748dfbe8321SBarry Smith   PetscErrorCode ierr;
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   PetscFunctionBegin;
751a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
752d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
753a30f8f8cSSatish Balay #endif
754a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
756a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
758a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7599c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
760a30f8f8cSSatish Balay #else
76105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #endif
76305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
764a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
765a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76640781036SHong Zhang   if (baij->slvec0) {
76740781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76940781036SHong Zhang   }
77040781036SHong Zhang   if (baij->slvec1) {
77140781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
77240781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77340781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77440781036SHong Zhang   }
77540781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
7765755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77705b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77805b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
779fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
780fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
781fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
78265460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78305b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
784a30f8f8cSSatish Balay #endif
78559ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78659ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
787899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
788a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
789901853e0SKris Buschelman 
790dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
793901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
794901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
795a30f8f8cSSatish Balay   PetscFunctionReturn(0);
796a30f8f8cSSatish Balay }
797a30f8f8cSSatish Balay 
7984a2ae208SSatish Balay #undef __FUNCT__
799547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
800547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
801547795f9SHong Zhang {
802547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
803547795f9SHong Zhang   PetscErrorCode ierr;
804547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
805547795f9SHong Zhang   PetscScalar    *x,*from;
806547795f9SHong Zhang 
807547795f9SHong Zhang   PetscFunctionBegin;
808547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
809547795f9SHong Zhang   if (nt != A->cmap->n) {
810547795f9SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
811547795f9SHong Zhang   }
812547795f9SHong Zhang 
813547795f9SHong Zhang   /* diagonal part */
814547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
815547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* subdiagonal part */
818547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   /* copy x into the vec slvec0 */
821547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
823547795f9SHong Zhang 
824547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
827547795f9SHong Zhang 
828547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
829547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
830547795f9SHong Zhang   /* supperdiagonal part */
831547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
832547795f9SHong Zhang   PetscFunctionReturn(0);
833547795f9SHong Zhang }
834547795f9SHong Zhang 
835547795f9SHong Zhang #undef __FUNCT__
836a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
837dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
838a9d4b620SHong Zhang {
839a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
840dfbe8321SBarry Smith   PetscErrorCode ierr;
841d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
842fa22f6d0SBarry Smith   PetscScalar    *x,*from;
843a9d4b620SHong Zhang 
844a9d4b620SHong Zhang   PetscFunctionBegin;
845a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
846d0f46423SBarry Smith   if (nt != A->cmap->n) {
847a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
848a9d4b620SHong Zhang   }
849a9d4b620SHong Zhang 
850a9d4b620SHong Zhang   /* diagonal part */
851a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
852fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
853a9d4b620SHong Zhang 
854a9d4b620SHong Zhang   /* subdiagonal part */
855a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
856fc165ae2SBarry Smith 
857a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8581ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8591ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
860a9d4b620SHong Zhang 
861fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
862fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8631ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
864fc165ae2SBarry Smith 
865fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
866ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
867a9d4b620SHong Zhang   /* supperdiagonal part */
868a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
869a9d4b620SHong Zhang   PetscFunctionReturn(0);
870a9d4b620SHong Zhang }
871a9d4b620SHong Zhang 
872a9d4b620SHong Zhang #undef __FUNCT__
87340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
874dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
875a30f8f8cSSatish Balay {
876a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
877dfbe8321SBarry Smith   PetscErrorCode ierr;
8781302d50aSBarry Smith   PetscInt       nt;
879a30f8f8cSSatish Balay 
880a30f8f8cSSatish Balay   PetscFunctionBegin;
881a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
882d0f46423SBarry Smith   if (nt != A->cmap->n) {
88329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
884a30f8f8cSSatish Balay   }
885a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
886d0f46423SBarry Smith   if (nt != A->rmap->N) {
88729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
888a30f8f8cSSatish Balay   }
88965d70643SHong Zhang 
890ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
891b941877fSHong Zhang   /* do diagonal part */
892b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
893b941877fSHong Zhang   /* do supperdiagonal part */
894ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
895b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
896b941877fSHong Zhang   /* do subdiagonal part */
897b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
898ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
899ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
90065d70643SHong Zhang 
901a30f8f8cSSatish Balay   PetscFunctionReturn(0);
902a30f8f8cSSatish Balay }
903a30f8f8cSSatish Balay 
9044a2ae208SSatish Balay #undef __FUNCT__
9054a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
906dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
907a30f8f8cSSatish Balay {
908de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
909dfbe8321SBarry Smith   PetscErrorCode ierr;
910d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
911a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
912a9d4b620SHong Zhang 
913a9d4b620SHong Zhang   PetscFunctionBegin;
914a9d4b620SHong Zhang   /*
9157adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9167adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
917a9d4b620SHong Zhang   */
918a9d4b620SHong Zhang   /* diagonal part */
919a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9202dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
921a9d4b620SHong Zhang 
922a9d4b620SHong Zhang   /* subdiagonal part */
923a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
924a9d4b620SHong Zhang 
925a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9261ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9271ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
928a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9291ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
930a9d4b620SHong Zhang 
931ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9321ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
933ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
934a9d4b620SHong Zhang 
935a9d4b620SHong Zhang   /* supperdiagonal part */
936a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
937a9d4b620SHong Zhang 
938a9d4b620SHong Zhang   PetscFunctionReturn(0);
939a9d4b620SHong Zhang }
940a9d4b620SHong Zhang 
941a9d4b620SHong Zhang #undef __FUNCT__
942a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
943dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
944a9d4b620SHong Zhang {
945a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
946dfbe8321SBarry Smith   PetscErrorCode ierr;
947a30f8f8cSSatish Balay 
948a30f8f8cSSatish Balay   PetscFunctionBegin;
949ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
950b941877fSHong Zhang   /* do diagonal part */
951b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
952b941877fSHong Zhang   /* do supperdiagonal part */
953ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
954de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
955de8b6608SHong Zhang 
956b941877fSHong Zhang   /* do subdiagonal part */
957a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
958ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
959ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
960aa482183SHong Zhang 
961a30f8f8cSSatish Balay   PetscFunctionReturn(0);
962a30f8f8cSSatish Balay }
963a30f8f8cSSatish Balay 
964a30f8f8cSSatish Balay /*
965a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
966a30f8f8cSSatish Balay    diagonal block
967a30f8f8cSSatish Balay */
9684a2ae208SSatish Balay #undef __FUNCT__
9694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
970dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
971a30f8f8cSSatish Balay {
972a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
973dfbe8321SBarry Smith   PetscErrorCode ierr;
974a30f8f8cSSatish Balay 
975a30f8f8cSSatish Balay   PetscFunctionBegin;
976d0f46423SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
977a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
978a30f8f8cSSatish Balay   PetscFunctionReturn(0);
979a30f8f8cSSatish Balay }
980a30f8f8cSSatish Balay 
9814a2ae208SSatish Balay #undef __FUNCT__
9824a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
983f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
984a30f8f8cSSatish Balay {
985a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
986dfbe8321SBarry Smith   PetscErrorCode ierr;
987a30f8f8cSSatish Balay 
988a30f8f8cSSatish Balay   PetscFunctionBegin;
989f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
990f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
991a30f8f8cSSatish Balay   PetscFunctionReturn(0);
992a30f8f8cSSatish Balay }
993a30f8f8cSSatish Balay 
9944a2ae208SSatish Balay #undef __FUNCT__
9954a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9961302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
997a30f8f8cSSatish Balay {
998d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
999d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1000d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1001d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1002d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1003899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1004d0d4cfc2SHong Zhang 
1005a30f8f8cSSatish Balay   PetscFunctionBegin;
10064eeb8337SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1007d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1008d0d4cfc2SHong Zhang 
1009d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1010d0d4cfc2SHong Zhang     /*
1011d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1012d0d4cfc2SHong Zhang     */
1013d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1014d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1015d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1016d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1017d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1018d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1019d0d4cfc2SHong Zhang     }
102074ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1021d0d4cfc2SHong Zhang   }
1022d0d4cfc2SHong Zhang 
1023d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1024d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1025d0d4cfc2SHong Zhang 
1026d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1027d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1028d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1029d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1030d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1031d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1032d0d4cfc2SHong Zhang 
1033d0d4cfc2SHong Zhang   cmap  = mat->garray;
1034d0d4cfc2SHong Zhang   if (v  || idx) {
1035d0d4cfc2SHong Zhang     if (nztot) {
1036d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1037d0d4cfc2SHong Zhang       PetscInt imark = -1;
1038d0d4cfc2SHong Zhang       if (v) {
1039d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1040d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1041d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1042d0d4cfc2SHong Zhang           else break;
1043d0d4cfc2SHong Zhang         }
1044d0d4cfc2SHong Zhang         imark = i;
1045d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1046d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1047d0d4cfc2SHong Zhang       }
1048d0d4cfc2SHong Zhang       if (idx) {
1049d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1050d0d4cfc2SHong Zhang         if (imark > -1) {
1051d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1052d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1053d0d4cfc2SHong Zhang           }
1054d0d4cfc2SHong Zhang         } else {
1055d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1056d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1057d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1058d0d4cfc2SHong Zhang             else break;
1059d0d4cfc2SHong Zhang           }
1060d0d4cfc2SHong Zhang           imark = i;
1061d0d4cfc2SHong Zhang         }
1062d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1063d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1064d0d4cfc2SHong Zhang       }
1065d0d4cfc2SHong Zhang     } else {
1066d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1067d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1068d0d4cfc2SHong Zhang     }
1069d0d4cfc2SHong Zhang   }
1070d0d4cfc2SHong Zhang   *nz = nztot;
1071d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1072d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1073a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1074a30f8f8cSSatish Balay }
1075a30f8f8cSSatish Balay 
10764a2ae208SSatish Balay #undef __FUNCT__
10774a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10781302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1079a30f8f8cSSatish Balay {
1080a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1081a30f8f8cSSatish Balay 
1082a30f8f8cSSatish Balay   PetscFunctionBegin;
1083abc0a331SBarry Smith   if (!baij->getrowactive) {
1084abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1085a30f8f8cSSatish Balay   }
1086a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1087a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1088a30f8f8cSSatish Balay }
1089a30f8f8cSSatish Balay 
10904a2ae208SSatish Balay #undef __FUNCT__
1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1092d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1093d0d4cfc2SHong Zhang {
1094d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1095d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1096d0d4cfc2SHong Zhang 
1097d0d4cfc2SHong Zhang   PetscFunctionBegin;
1098d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1099d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1100d0d4cfc2SHong Zhang }
1101d0d4cfc2SHong Zhang #undef __FUNCT__
1102d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1103d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1104d0d4cfc2SHong Zhang {
1105d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1106d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1107d0d4cfc2SHong Zhang 
1108d0d4cfc2SHong Zhang   PetscFunctionBegin;
1109d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1110d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1111d0d4cfc2SHong Zhang }
1112d0d4cfc2SHong Zhang 
1113d0d4cfc2SHong Zhang #undef __FUNCT__
111499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
111599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111699cafbc1SBarry Smith {
111799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111899cafbc1SBarry Smith   PetscErrorCode ierr;
111999cafbc1SBarry Smith 
112099cafbc1SBarry Smith   PetscFunctionBegin;
112199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
112299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
112399cafbc1SBarry Smith   PetscFunctionReturn(0);
112499cafbc1SBarry Smith }
112599cafbc1SBarry Smith 
112699cafbc1SBarry Smith #undef __FUNCT__
112799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112999cafbc1SBarry Smith {
113099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
113199cafbc1SBarry Smith   PetscErrorCode ierr;
113299cafbc1SBarry Smith 
113399cafbc1SBarry Smith   PetscFunctionBegin;
113499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
113599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113699cafbc1SBarry Smith   PetscFunctionReturn(0);
113799cafbc1SBarry Smith }
113899cafbc1SBarry Smith 
113999cafbc1SBarry Smith #undef __FUNCT__
11404a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1141dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1142a30f8f8cSSatish Balay {
1143a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1144dfbe8321SBarry Smith   PetscErrorCode ierr;
1145a30f8f8cSSatish Balay 
1146a30f8f8cSSatish Balay   PetscFunctionBegin;
1147a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1148a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1149a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1150a30f8f8cSSatish Balay }
1151a30f8f8cSSatish Balay 
11524a2ae208SSatish Balay #undef __FUNCT__
11534a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1154dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1155a30f8f8cSSatish Balay {
1156a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1157a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1158dfbe8321SBarry Smith   PetscErrorCode ierr;
1159a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1160a30f8f8cSSatish Balay 
1161a30f8f8cSSatish Balay   PetscFunctionBegin;
1162d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1163a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1164a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1165a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1166a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1167a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1168a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1169a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1170a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1171a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1172a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1173a30f8f8cSSatish Balay     info->memory       = isend[3];
1174a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1175a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11767adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1178a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1179a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1180a30f8f8cSSatish Balay     info->memory       = irecv[3];
1181a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1182a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11837adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1184a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1185a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1186a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1187a30f8f8cSSatish Balay     info->memory       = irecv[3];
1188a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1189a30f8f8cSSatish Balay   } else {
119077431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1191a30f8f8cSSatish Balay   }
1192a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1193a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1194a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1195a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1196a30f8f8cSSatish Balay }
1197a30f8f8cSSatish Balay 
11984a2ae208SSatish Balay #undef __FUNCT__
11994a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
12004e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1201a30f8f8cSSatish Balay {
1202a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1203d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1204dfbe8321SBarry Smith   PetscErrorCode ierr;
1205a30f8f8cSSatish Balay 
1206a30f8f8cSSatish Balay   PetscFunctionBegin;
1207e98b92d7SKris Buschelman   switch (op) {
1208512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1209e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
121028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1211a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1212e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12134e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12144e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1215e98b92d7SKris Buschelman     break;
1216e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12174e0d8c25SBarry Smith     a->roworiented = flg;
12184e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12194e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1220e98b92d7SKris Buschelman     break;
12214e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1222290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1223e98b92d7SKris Buschelman     break;
1224e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12254e0d8c25SBarry Smith     a->donotstash = flg;
1226e98b92d7SKris Buschelman     break;
1227e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12284e0d8c25SBarry Smith     a->ht_flag = flg;
1229e98b92d7SKris Buschelman     break;
12309a4540c5SBarry Smith   case MAT_HERMITIAN:
1231547795f9SHong Zhang     if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1232eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1233547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1234eeffb40dSHong Zhang     break;
123577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1236eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1237eeffb40dSHong Zhang     break;
123877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1239eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1240eeffb40dSHong Zhang     break;
12419a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12424e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1243290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124477e54ba9SKris Buschelman     break;
1245d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12464e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1247d0d4cfc2SHong Zhang     break;
1248d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12494e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1250d0d4cfc2SHong Zhang     break;
1251d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12524e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1253d0d4cfc2SHong Zhang     break;
1254e98b92d7SKris Buschelman   default:
1255ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1256a30f8f8cSSatish Balay   }
1257a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1263a30f8f8cSSatish Balay {
1264dfbe8321SBarry Smith   PetscErrorCode ierr;
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
1266815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1267999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1268fc4dec0aSBarry Smith   }
12698115998fSBarry Smith   PetscFunctionReturn(0);
1270a30f8f8cSSatish Balay }
1271a30f8f8cSSatish Balay 
12724a2ae208SSatish Balay #undef __FUNCT__
12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1275a30f8f8cSSatish Balay {
1276a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1277a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1278dfbe8321SBarry Smith   PetscErrorCode ierr;
12795e90f9d9SHong Zhang   PetscInt       nv,m,n;
1280b3bf805bSHong Zhang   PetscTruth     flg;
1281a30f8f8cSSatish Balay 
1282a30f8f8cSSatish Balay   PetscFunctionBegin;
1283a30f8f8cSSatish Balay   if (ll != rr){
1284b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1285b3bf805bSHong Zhang     if (!flg)
128629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1287a30f8f8cSSatish Balay   }
1288b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1289b3bf805bSHong Zhang 
12905e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12915e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1292b3bf805bSHong Zhang 
12935e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12945e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12955e90f9d9SHong Zhang 
1296ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12975e90f9d9SHong Zhang 
12985e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1299a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13005e90f9d9SHong Zhang 
13015e90f9d9SHong Zhang   /* scale the diagonal part */
1302a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay 
13045e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1305ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1306a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1307a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1308a30f8f8cSSatish Balay }
1309a30f8f8cSSatish Balay 
13104a2ae208SSatish Balay #undef __FUNCT__
13114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1312dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1313a30f8f8cSSatish Balay {
1314f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1315dfbe8321SBarry Smith   PetscErrorCode ierr;
1316a30f8f8cSSatish Balay 
1317a30f8f8cSSatish Balay   PetscFunctionBegin;
1318a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1320a30f8f8cSSatish Balay }
1321a30f8f8cSSatish Balay 
13226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1323a30f8f8cSSatish Balay 
13244a2ae208SSatish Balay #undef __FUNCT__
13254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1326dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1327a30f8f8cSSatish Balay {
1328a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1329a30f8f8cSSatish Balay   Mat            a,b,c,d;
1330a30f8f8cSSatish Balay   PetscTruth     flg;
1331dfbe8321SBarry Smith   PetscErrorCode ierr;
1332a30f8f8cSSatish Balay 
1333a30f8f8cSSatish Balay   PetscFunctionBegin;
1334a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1335a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1336a30f8f8cSSatish Balay 
1337a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1338abc0a331SBarry Smith   if (flg) {
1339a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   }
13417adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1342a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1343a30f8f8cSSatish Balay }
1344a30f8f8cSSatish Balay 
13454a2ae208SSatish Balay #undef __FUNCT__
13463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13473c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13483c896bc6SHong Zhang {
13493c896bc6SHong Zhang   PetscErrorCode ierr;
13503c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13513c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13523c896bc6SHong Zhang 
13533c896bc6SHong Zhang   PetscFunctionBegin;
13543c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13553c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1356d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13573c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1358d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13593c896bc6SHong Zhang   } else {
13603c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13613c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13623c896bc6SHong Zhang   }
13633c896bc6SHong Zhang   PetscFunctionReturn(0);
13643c896bc6SHong Zhang }
13653c896bc6SHong Zhang 
13663c896bc6SHong Zhang #undef __FUNCT__
13674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1368dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1369273d9f13SBarry Smith {
1370dfbe8321SBarry Smith   PetscErrorCode ierr;
1371273d9f13SBarry Smith 
1372273d9f13SBarry Smith   PetscFunctionBegin;
1373db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1374273d9f13SBarry Smith   PetscFunctionReturn(0);
1375273d9f13SBarry Smith }
1376a5e6ed63SBarry Smith 
13774fe895cdSHong Zhang #undef __FUNCT__
13784fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13804fe895cdSHong Zhang {
13814fe895cdSHong Zhang   PetscErrorCode ierr;
13824fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13834fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13844fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13854fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13864fe895cdSHong Zhang 
13874fe895cdSHong Zhang   PetscFunctionBegin;
13884fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13894fe895cdSHong Zhang     PetscScalar alpha = a;
13904fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13914fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13920805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13934fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13944fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13954fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13960805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13974fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13984fe895cdSHong Zhang   } else {
1399d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14004fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1401d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14024fe895cdSHong Zhang   }
14034fe895cdSHong Zhang   PetscFunctionReturn(0);
14044fe895cdSHong Zhang }
14054fe895cdSHong Zhang 
1406a5e6ed63SBarry Smith #undef __FUNCT__
14076363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14086363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14096363de48SJed Brown {
14106363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14116363de48SJed Brown   PetscInt        rbs,cbs;
14126363de48SJed Brown   PetscErrorCode  ierr;
14136363de48SJed Brown 
14146363de48SJed Brown   PetscFunctionBegin;
14156363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14166363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14176363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14186363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
14196363de48SJed Brown   if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
14206363de48SJed Brown   if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14216363de48SJed Brown   PetscFunctionReturn(0);
14226363de48SJed Brown }
14236363de48SJed Brown 
14246363de48SJed Brown #undef __FUNCT__
1425a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14261302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1427a5e6ed63SBarry Smith {
14286849ba73SBarry Smith   PetscErrorCode ierr;
14291302d50aSBarry Smith   PetscInt       i;
1430a5e6ed63SBarry Smith   PetscTruth     flg;
1431a5e6ed63SBarry Smith 
14326849ba73SBarry Smith   PetscFunctionBegin;
1433a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1434a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1435a5e6ed63SBarry Smith     if (!flg) {
14361302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1437a5e6ed63SBarry Smith     }
1438a5e6ed63SBarry Smith   }
1439a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1440a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1441a5e6ed63SBarry Smith }
1442a5e6ed63SBarry Smith 
1443a5e6ed63SBarry Smith 
1444a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1445a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1446a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1447a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1448a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1449a9d4b620SHong Zhang        MatMult_MPISBAIJ,
145097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1451431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1452431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1453a30f8f8cSSatish Balay        0,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
145697304618SKris Buschelman /*10*/ 0,
1457a30f8f8cSSatish Balay        0,
1458a30f8f8cSSatish Balay        0,
145941f059aeSBarry Smith        MatSOR_MPISBAIJ,
1460a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
146197304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1462a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1463a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1467a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1468a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1469a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1470d519adbfSMatthew Knepley /*24*/ 0,
1471a30f8f8cSSatish Balay        0,
1472a30f8f8cSSatish Balay        0,
1473a30f8f8cSSatish Balay        0,
1474a30f8f8cSSatish Balay        0,
1475d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1476b5df2d14SHong Zhang        0,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1481a30f8f8cSSatish Balay        0,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        0,
1484a30f8f8cSSatish Balay        0,
1485d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1486a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1487d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1488a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14893c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1490d519adbfSMatthew Knepley /*44*/ 0,
1491a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1492a30f8f8cSSatish Balay        0,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
14956363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1496a30f8f8cSSatish Balay        0,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        0,
1500d519adbfSMatthew Knepley /*54*/ 0,
1501a30f8f8cSSatish Balay        0,
1502a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1505d519adbfSMatthew Knepley /*59*/ 0,
1506a30f8f8cSSatish Balay        0,
1507a30f8f8cSSatish Balay        0,
1508357abbc8SBarry Smith        0,
150924d5174aSHong Zhang        0,
1510d519adbfSMatthew Knepley /*64*/ 0,
151124d5174aSHong Zhang        0,
151224d5174aSHong Zhang        0,
151324d5174aSHong Zhang        0,
151424d5174aSHong Zhang        0,
1515d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151624d5174aSHong Zhang        0,
151797304618SKris Buschelman        0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
1520d519adbfSMatthew Knepley /*74*/ 0,
152197304618SKris Buschelman        0,
152297304618SKris Buschelman        0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
1525d519adbfSMatthew Knepley /*79*/ 0,
152697304618SKris Buschelman        0,
152797304618SKris Buschelman        0,
152897304618SKris Buschelman        0,
1529865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1530d519adbfSMatthew Knepley /*84*/ 0,
1531865e5f61SKris Buschelman        0,
1532865e5f61SKris Buschelman        0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535d519adbfSMatthew Knepley /*89*/ 0,
1536865e5f61SKris Buschelman        0,
1537865e5f61SKris Buschelman        0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
1540d519adbfSMatthew Knepley /*94*/ 0,
1541865e5f61SKris Buschelman        0,
1542865e5f61SKris Buschelman        0,
154399cafbc1SBarry Smith        0,
154499cafbc1SBarry Smith        0,
1545d519adbfSMatthew Knepley /*99*/ 0,
154699cafbc1SBarry Smith        0,
154799cafbc1SBarry Smith        0,
154899cafbc1SBarry Smith        0,
154999cafbc1SBarry Smith        0,
1550d519adbfSMatthew Knepley /*104*/0,
155199cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1552d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1553d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1554d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
155599cafbc1SBarry Smith };
1556a30f8f8cSSatish Balay 
1557a30f8f8cSSatish Balay 
1558a30f8f8cSSatish Balay EXTERN_C_BEGIN
15594a2ae208SSatish Balay #undef __FUNCT__
15604a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1561be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1562a30f8f8cSSatish Balay {
1563a30f8f8cSSatish Balay   PetscFunctionBegin;
1564a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1565a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1566a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1567a30f8f8cSSatish Balay }
1568a30f8f8cSSatish Balay EXTERN_C_END
1569a30f8f8cSSatish Balay 
1570273d9f13SBarry Smith EXTERN_C_BEGIN
15714a2ae208SSatish Balay #undef __FUNCT__
1572a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1573be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1574a23d5eceSKris Buschelman {
1575a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1576dfbe8321SBarry Smith   PetscErrorCode ierr;
1577db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1578a23d5eceSKris Buschelman 
1579a23d5eceSKris Buschelman   PetscFunctionBegin;
1580db4efbfdSBarry Smith   if (bs < 0){
15817adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1582db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15838c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1584db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1585db4efbfdSBarry Smith   }
1586db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1587db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1588db4efbfdSBarry Smith   }
1589db4efbfdSBarry Smith   bs = newbs;
1590a23d5eceSKris Buschelman 
1591a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1592a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
159377431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
159477431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1595899cda47SBarry Smith 
1596d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
159726283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159826283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1599899cda47SBarry Smith 
1600a23d5eceSKris Buschelman   if (d_nnz) {
1601d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
160277431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1603a23d5eceSKris Buschelman     }
1604a23d5eceSKris Buschelman   }
1605a23d5eceSKris Buschelman   if (o_nnz) {
1606d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
160777431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1608a23d5eceSKris Buschelman     }
1609a23d5eceSKris Buschelman   }
1610a23d5eceSKris Buschelman 
1611a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1612d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1613d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1614d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1615d0f46423SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1616a23d5eceSKris Buschelman   }
1617a23d5eceSKris Buschelman 
1618d0f46423SBarry Smith   B->rmap->bs  = bs;
1619a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1620a23d5eceSKris Buschelman   b->mbs = mbs;
1621a23d5eceSKris Buschelman   b->nbs = mbs;
1622a23d5eceSKris Buschelman   b->Mbs = Mbs;
1623a23d5eceSKris Buschelman   b->Nbs = Mbs;
1624a23d5eceSKris Buschelman 
1625a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1626d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1627a23d5eceSKris Buschelman   }
1628d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1629d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1630a23d5eceSKris Buschelman 
1631d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1632d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1633a23d5eceSKris Buschelman 
1634526dfc15SBarry Smith   if (!B->preallocated) {
1635f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1636d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16379c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
163852e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1639f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1640d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16414aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
164252e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
164315bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1644526dfc15SBarry Smith   }
1645a23d5eceSKris Buschelman 
1646526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1647526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1648526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1649a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1650a23d5eceSKris Buschelman }
1651a23d5eceSKris Buschelman EXTERN_C_END
1652a23d5eceSKris Buschelman 
16535c9eb25fSBarry Smith EXTERN_C_BEGIN
1654611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1655611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1656611f576cSBarry Smith #endif
1657611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16585c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1659611f576cSBarry Smith #endif
1660b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1661b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1662b5e56a35SBarry Smith #endif
16635c9eb25fSBarry Smith EXTERN_C_END
16645c9eb25fSBarry Smith 
16650bad9183SKris Buschelman /*MC
1666fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16670bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16680bad9183SKris Buschelman 
16690bad9183SKris Buschelman    Options Database Keys:
16700bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16710bad9183SKris Buschelman 
16720bad9183SKris Buschelman   Level: beginner
16730bad9183SKris Buschelman 
16740bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16750bad9183SKris Buschelman M*/
16760bad9183SKris Buschelman 
1677a23d5eceSKris Buschelman EXTERN_C_BEGIN
1678a23d5eceSKris Buschelman #undef __FUNCT__
16794a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1680be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1681b5df2d14SHong Zhang {
1682b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1683dfbe8321SBarry Smith   PetscErrorCode ierr;
1684b5df2d14SHong Zhang   PetscTruth     flg;
1685b5df2d14SHong Zhang 
1686b5df2d14SHong Zhang   PetscFunctionBegin;
1687b5df2d14SHong Zhang 
168838f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1689b0a32e0cSBarry Smith   B->data = (void*)b;
1690b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1691b5df2d14SHong Zhang 
1692b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1693b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1694b5df2d14SHong Zhang   B->mapping         = 0;
1695b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1696b5df2d14SHong Zhang 
1697b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16987adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16997adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1700b5df2d14SHong Zhang 
1701b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1702899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1703b5df2d14SHong Zhang 
1704b5df2d14SHong Zhang   /* build cache for off array entries formed */
17057adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1706b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1707b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1708b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1709b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   /* stuff used in block assembly */
1712b5df2d14SHong Zhang   b->barray       = 0;
1713b5df2d14SHong Zhang 
1714b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1715b5df2d14SHong Zhang   b->lvec         = 0;
1716b5df2d14SHong Zhang   b->Mvctx        = 0;
171740781036SHong Zhang   b->slvec0       = 0;
171840781036SHong Zhang   b->slvec0b      = 0;
171940781036SHong Zhang   b->slvec1       = 0;
172040781036SHong Zhang   b->slvec1a      = 0;
172140781036SHong Zhang   b->slvec1b      = 0;
172240781036SHong Zhang   b->sMvctx       = 0;
1723b5df2d14SHong Zhang 
1724b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1725b5df2d14SHong Zhang   b->rowindices   = 0;
1726b5df2d14SHong Zhang   b->rowvalues    = 0;
1727b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang   /* hash table stuff */
1730b5df2d14SHong Zhang   b->ht           = 0;
1731b5df2d14SHong Zhang   b->hd           = 0;
1732b5df2d14SHong Zhang   b->ht_size      = 0;
1733b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1734b5df2d14SHong Zhang   b->ht_fact      = 0;
1735b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1736b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1737b5df2d14SHong Zhang 
173859ffdab8SBarry Smith   b->in_loc       = 0;
173959ffdab8SBarry Smith   b->v_loc        = 0;
174059ffdab8SBarry Smith   b->n_loc        = 0;
17417adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17428c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1743b5df2d14SHong Zhang     if (flg) {
1744f6275e2eSBarry Smith       PetscReal fact = 1.39;
17454e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17468c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1747b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1748b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17491e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1750b5df2d14SHong Zhang     }
17518c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17528c07d4e3SBarry Smith 
1753b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1754ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1755b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1756b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1757b5e56a35SBarry Smith #endif
1758611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1759ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17605c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17615c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1762611f576cSBarry Smith #endif
1763611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1764ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17655c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17665c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1767611f576cSBarry Smith #endif
1768b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1769b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1770b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1771b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1772b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1773b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1774b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1775b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1776b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1777a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1778a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1779a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
178023ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
178123ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178223ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178323ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1785b5df2d14SHong Zhang   PetscFunctionReturn(0);
1786b5df2d14SHong Zhang }
1787273d9f13SBarry Smith EXTERN_C_END
1788b5df2d14SHong Zhang 
1789209238afSKris Buschelman /*MC
1790002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1791209238afSKris Buschelman 
1792209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1793209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1794209238afSKris Buschelman 
1795209238afSKris Buschelman    Options Database Keys:
1796209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1797209238afSKris Buschelman 
1798209238afSKris Buschelman   Level: beginner
1799209238afSKris Buschelman 
1800209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1801209238afSKris Buschelman M*/
1802209238afSKris Buschelman 
1803209238afSKris Buschelman EXTERN_C_BEGIN
1804209238afSKris Buschelman #undef __FUNCT__
1805209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1806be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1807dfbe8321SBarry Smith {
18086849ba73SBarry Smith   PetscErrorCode ierr;
18091302d50aSBarry Smith   PetscMPIInt    size;
1810209238afSKris Buschelman 
1811209238afSKris Buschelman   PetscFunctionBegin;
18127adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1813209238afSKris Buschelman   if (size == 1) {
1814209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1815209238afSKris Buschelman   } else {
1816209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1817209238afSKris Buschelman   }
1818209238afSKris Buschelman   PetscFunctionReturn(0);
1819209238afSKris Buschelman }
1820209238afSKris Buschelman EXTERN_C_END
1821209238afSKris Buschelman 
18224a2ae208SSatish Balay #undef __FUNCT__
18234a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1824b5df2d14SHong Zhang /*@C
1825b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1826b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1827b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1828b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    Collective on Mat
1831b5df2d14SHong Zhang 
1832b5df2d14SHong Zhang    Input Parameters:
1833b5df2d14SHong Zhang +  A - the matrix
1834b5df2d14SHong Zhang .  bs   - size of blockk
1835b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1836b5df2d14SHong Zhang            submatrix  (same for all local rows)
1837b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18386d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18396d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18406d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1841b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1842b5df2d14SHong Zhang            submatrix (same for all local rows).
1843b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1844b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1845b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1846b5df2d14SHong Zhang 
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang    Options Database Keys:
1849b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1850b5df2d14SHong Zhang                      block calculations (much slower)
1851b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang    Notes:
1854b5df2d14SHong Zhang 
1855b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1856b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1857b5df2d14SHong Zhang 
185849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
185949a6f317SBarry Smith 
1860b5df2d14SHong Zhang    Storage Information:
1861b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1862b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1863b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1864b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1865b5df2d14SHong Zhang 
1866b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1867b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1868b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1869b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1870b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1871b5df2d14SHong Zhang 
1872aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1873aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1874aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1875aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1876aa95bbe8SBarry Smith 
1877b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1878b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1879b5df2d14SHong Zhang 
1880b5df2d14SHong Zhang .vb
1881b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1882b5df2d14SHong Zhang           -------------------
1883b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1884b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1885b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1886b5df2d14SHong Zhang           -------------------
1887b5df2d14SHong Zhang .ve
1888b5df2d14SHong Zhang 
1889b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1890b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18916d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18926d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1893b5df2d14SHong Zhang 
18946d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18956d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1896b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1897b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1898b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1899b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1900b5df2d14SHong Zhang    matrices.
1901b5df2d14SHong Zhang 
1902b5df2d14SHong Zhang    Level: intermediate
1903b5df2d14SHong Zhang 
1904b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1905b5df2d14SHong Zhang 
1906b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1907b5df2d14SHong Zhang @*/
1908be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1909b5df2d14SHong Zhang {
19101302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1911b5df2d14SHong Zhang 
1912b5df2d14SHong Zhang   PetscFunctionBegin;
1913a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1914a23d5eceSKris Buschelman   if (f) {
1915a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1916b5df2d14SHong Zhang   }
1917b5df2d14SHong Zhang   PetscFunctionReturn(0);
1918b5df2d14SHong Zhang }
1919b5df2d14SHong Zhang 
19204a2ae208SSatish Balay #undef __FUNCT__
19214a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1922a30f8f8cSSatish Balay /*@C
1923a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1924a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1925a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1926a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1927a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1928a30f8f8cSSatish Balay 
1929a30f8f8cSSatish Balay    Collective on MPI_Comm
1930a30f8f8cSSatish Balay 
1931a30f8f8cSSatish Balay    Input Parameters:
1932a30f8f8cSSatish Balay +  comm - MPI communicator
1933a30f8f8cSSatish Balay .  bs   - size of blockk
1934a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1935a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1936a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1937a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1938a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1939a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1940a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1941a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1942a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1943a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1944a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19456d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19466d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19476d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1948a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1949a30f8f8cSSatish Balay            submatrix (same for all local rows).
1950a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1951a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1952a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1953a30f8f8cSSatish Balay 
1954a30f8f8cSSatish Balay    Output Parameter:
1955a30f8f8cSSatish Balay .  A - the matrix
1956a30f8f8cSSatish Balay 
1957a30f8f8cSSatish Balay    Options Database Keys:
1958a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1959a30f8f8cSSatish Balay                      block calculations (much slower)
1960a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1961a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1962a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1963a30f8f8cSSatish Balay 
1964175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1965ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1966175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1967175b88e8SBarry Smith 
1968a30f8f8cSSatish Balay    Notes:
1969d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19706d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1971d1be2dadSMatthew Knepley 
1972a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1973a30f8f8cSSatish Balay    (possibly both).
1974a30f8f8cSSatish Balay 
1975a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1976a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1977a30f8f8cSSatish Balay 
197849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
197949a6f317SBarry Smith 
1980a30f8f8cSSatish Balay    Storage Information:
1981a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1982a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1983a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1984a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1985a30f8f8cSSatish Balay 
1986a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1987a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1988a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1989a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1990a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1991a30f8f8cSSatish Balay 
1992a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1993a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay .vb
1996a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1997a30f8f8cSSatish Balay           -------------------
1998a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1999a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2000a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2001a30f8f8cSSatish Balay           -------------------
2002a30f8f8cSSatish Balay .ve
2003a30f8f8cSSatish Balay 
2004a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2005a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20066d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20076d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2008a30f8f8cSSatish Balay 
20096d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20106d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2011a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2012a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2013a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2014a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2015a30f8f8cSSatish Balay    matrices.
2016a30f8f8cSSatish Balay 
2017a30f8f8cSSatish Balay    Level: intermediate
2018a30f8f8cSSatish Balay 
2019a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2020a30f8f8cSSatish Balay 
2021a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2022a30f8f8cSSatish Balay @*/
2023a30f8f8cSSatish Balay 
2024be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2025a30f8f8cSSatish Balay {
20266849ba73SBarry Smith   PetscErrorCode ierr;
20271302d50aSBarry Smith   PetscMPIInt    size;
2028a30f8f8cSSatish Balay 
2029a30f8f8cSSatish Balay   PetscFunctionBegin;
2030f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2031f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2032273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2033273d9f13SBarry Smith   if (size > 1) {
2034b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2035b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2036273d9f13SBarry Smith   } else {
2037273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2038273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2039273d9f13SBarry Smith   }
2040a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2041a30f8f8cSSatish Balay }
2042a30f8f8cSSatish Balay 
2043a30f8f8cSSatish Balay 
20444a2ae208SSatish Balay #undef __FUNCT__
20454a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20466849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2047a30f8f8cSSatish Balay {
2048a30f8f8cSSatish Balay   Mat            mat;
2049a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2050dfbe8321SBarry Smith   PetscErrorCode ierr;
2051d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2052387bc808SHong Zhang   PetscScalar    *array;
2053a30f8f8cSSatish Balay 
2054a30f8f8cSSatish Balay   PetscFunctionBegin;
2055a30f8f8cSSatish Balay   *newmat       = 0;
20567adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2057d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20587adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20591d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
206026283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
206126283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2062e1b6402fSHong Zhang 
206382327fa8SHong Zhang   mat->factor       = matin->factor;
2064273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206582327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20667fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20677fff6886SHong Zhang 
2068b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2069a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2070a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2071a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2072a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2073a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2074a30f8f8cSSatish Balay 
2075899cda47SBarry Smith 
2076a30f8f8cSSatish Balay   a->size         = oldmat->size;
2077a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2078a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2079a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2080a30f8f8cSSatish Balay   a->rowindices   = 0;
2081a30f8f8cSSatish Balay   a->rowvalues    = 0;
2082a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2083a30f8f8cSSatish Balay   a->barray       = 0;
2084899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2085899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2086899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2087899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2088a30f8f8cSSatish Balay 
2089a30f8f8cSSatish Balay   /* hash table stuff */
2090a30f8f8cSSatish Balay   a->ht           = 0;
2091a30f8f8cSSatish Balay   a->hd           = 0;
2092a30f8f8cSSatish Balay   a->ht_size      = 0;
2093a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2094a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2095a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2096a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2097a30f8f8cSSatish Balay 
2098899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2099a30f8f8cSSatish Balay   if (oldmat->colmap) {
2100a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2101a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2102a30f8f8cSSatish Balay #else
21031302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21051302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2106a30f8f8cSSatish Balay #endif
2107a30f8f8cSSatish Balay   } else a->colmap = 0;
2108387bc808SHong Zhang 
2109a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21101302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
211152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21121302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2113a30f8f8cSSatish Balay   } else a->garray = 0;
2114a30f8f8cSSatish Balay 
2115533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2116a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
211752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2118a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
211952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
212082327fa8SHong Zhang 
212182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
212252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2125387bc808SHong Zhang 
2126387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21271ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2128387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2129387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21301ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21311ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2132387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21331ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
213652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
213752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
213852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2139387bc808SHong Zhang 
2140387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2141387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2142387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214482327fa8SHong Zhang 
2145a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
214652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2147a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
214852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21497adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2150a30f8f8cSSatish Balay   *newmat = mat;
2151a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2152a30f8f8cSSatish Balay }
2153a30f8f8cSSatish Balay 
21544a2ae208SSatish Balay #undef __FUNCT__
21554a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2156a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2157a30f8f8cSSatish Balay {
2158a30f8f8cSSatish Balay   Mat            A;
21596849ba73SBarry Smith   PetscErrorCode ierr;
216013f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216187828ca2SBarry Smith   PetscScalar    *vals,*buf;
2162a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2163a30f8f8cSSatish Balay   MPI_Status     status;
2164e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
216513f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21662fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21671302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21681302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21691302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
217013f74950SBarry Smith   int            fd;
2171a30f8f8cSSatish Balay 
2172a30f8f8cSSatish Balay   PetscFunctionBegin;
217377925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21748c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21758c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2176a30f8f8cSSatish Balay 
2177a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2178a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay   if (!rank) {
2180b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2181a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2182552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2183a30f8f8cSSatish Balay     if (header[3] < 0) {
218429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2185a30f8f8cSSatish Balay     }
2186a30f8f8cSSatish Balay   }
2187a30f8f8cSSatish Balay 
2188a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2190a30f8f8cSSatish Balay 
219129bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2192a30f8f8cSSatish Balay 
2193a30f8f8cSSatish Balay   /*
2194a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2195a30f8f8cSSatish Balay      divisible by the blocksize
2196a30f8f8cSSatish Balay   */
2197a30f8f8cSSatish Balay   Mbs        = M/bs;
2198a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2199a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2200a30f8f8cSSatish Balay   else                  Mbs++;
2201a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
22021e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2203a30f8f8cSSatish Balay   }
2204a30f8f8cSSatish Balay 
2205a30f8f8cSSatish Balay   /* determine ownership of all rows */
2206a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2207a30f8f8cSSatish Balay   m          = mbs*bs;
220874ed9c26SBarry Smith   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2209e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2210e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2211a30f8f8cSSatish Balay   rowners[0] = 0;
2212a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2213a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2214a30f8f8cSSatish Balay   rstart = rowners[rank];
2215a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2216a30f8f8cSSatish Balay 
2217a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22182fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2219a30f8f8cSSatish Balay   if (!rank) {
22201302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2223a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2224a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2225a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2226a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay   } else {
2228a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay   }
2230a30f8f8cSSatish Balay 
22310222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2232a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22331302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22341302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2235a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2236a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2237a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2238a30f8f8cSSatish Balay       }
2239a30f8f8cSSatish Balay     }
2240a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2241a30f8f8cSSatish Balay 
2242a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2243a30f8f8cSSatish Balay     maxnz = 0;
2244a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2245a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2246a30f8f8cSSatish Balay     }
22471302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2248a30f8f8cSSatish Balay 
2249a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2250a30f8f8cSSatish Balay     nz     = procsnz[0];
22511302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay     mycols = ibuf;
2253a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2254a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2256a30f8f8cSSatish Balay 
2257a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2258a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2259a30f8f8cSSatish Balay       nz   = procsnz[i];
2260a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2261a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2262a30f8f8cSSatish Balay     }
2263a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2264a30f8f8cSSatish Balay     if (size != 1) {
2265a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2266a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2267a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2268a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2269a30f8f8cSSatish Balay     }
2270a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22710222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2272a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2273a30f8f8cSSatish Balay     nz = 0;
2274a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2275a30f8f8cSSatish Balay       nz += locrowlens[i];
2276a30f8f8cSSatish Balay     }
22771302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2278a30f8f8cSSatish Balay     mycols = ibuf;
2279a30f8f8cSSatish Balay     /* receive message of column indices*/
2280a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2281a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
228229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2283a30f8f8cSSatish Balay   }
2284a30f8f8cSSatish Balay 
2285a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
228674ed9c26SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
228774ed9c26SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
228874ed9c26SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
228974ed9c26SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229074ed9c26SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229174ed9c26SBarry Smith   rowcount = 0;
229274ed9c26SBarry Smith   nzcount  = 0;
2293a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2294a30f8f8cSSatish Balay     dcount  = 0;
2295a30f8f8cSSatish Balay     odcount = 0;
2296a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2297a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2298a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22990222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2300a30f8f8cSSatish Balay         if (!mask[tmp]) {
2301a30f8f8cSSatish Balay           mask[tmp] = 1;
23020222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23030222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2304a30f8f8cSSatish Balay         }
2305a30f8f8cSSatish Balay       }
2306a30f8f8cSSatish Balay       rowcount++;
2307a30f8f8cSSatish Balay     }
2308a30f8f8cSSatish Balay 
23090222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23100222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2311a30f8f8cSSatish Balay 
2312a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2313a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2314a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2315a30f8f8cSSatish Balay   }
2316a30f8f8cSSatish Balay 
2317a30f8f8cSSatish Balay   /* create our matrix */
2318f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2319f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
232022191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232117fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
232222191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2323a30f8f8cSSatish Balay 
2324a30f8f8cSSatish Balay   if (!rank) {
232587828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2326a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2327a30f8f8cSSatish Balay     nz = procsnz[0];
2328a30f8f8cSSatish Balay     vals = buf;
2329a30f8f8cSSatish Balay     mycols = ibuf;
2330a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2331a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2332a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2333a30f8f8cSSatish Balay 
2334a30f8f8cSSatish Balay     /* insert into matrix */
2335a30f8f8cSSatish Balay     jj      = rstart*bs;
2336a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23377e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2338a30f8f8cSSatish Balay       mycols += locrowlens[i];
2339a30f8f8cSSatish Balay       vals   += locrowlens[i];
2340a30f8f8cSSatish Balay       jj++;
2341a30f8f8cSSatish Balay     }
23427e06b45fSHong Zhang 
2343a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2344a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2345a30f8f8cSSatish Balay       nz   = procsnz[i];
2346a30f8f8cSSatish Balay       vals = buf;
2347a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23487adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2349a30f8f8cSSatish Balay     }
2350a30f8f8cSSatish Balay     /* the last proc */
2351a30f8f8cSSatish Balay     if (size != 1){
2352a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2353a30f8f8cSSatish Balay       vals = buf;
2354a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2355a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23567adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2357a30f8f8cSSatish Balay     }
2358a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23597e06b45fSHong Zhang 
2360a30f8f8cSSatish Balay   } else {
2361a30f8f8cSSatish Balay     /* receive numeric values */
236287828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2363a30f8f8cSSatish Balay 
2364a30f8f8cSSatish Balay     /* receive message of values*/
2365a30f8f8cSSatish Balay     vals   = buf;
2366a30f8f8cSSatish Balay     mycols = ibuf;
23677adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2368a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
236929bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2370a30f8f8cSSatish Balay 
2371a30f8f8cSSatish Balay     /* insert into matrix */
2372a30f8f8cSSatish Balay     jj      = rstart*bs;
2373a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2374a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2375a30f8f8cSSatish Balay       mycols += locrowlens[i];
2376a30f8f8cSSatish Balay       vals   += locrowlens[i];
2377a30f8f8cSSatish Balay       jj++;
2378a30f8f8cSSatish Balay     }
2379a30f8f8cSSatish Balay   }
23807e06b45fSHong Zhang 
2381a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2382a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2383a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
238474ed9c26SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
238574ed9c26SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
238674ed9c26SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2387a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2388a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238922191285SKris Buschelman   *newmat = A;
2390a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2391a30f8f8cSSatish Balay }
2392a30f8f8cSSatish Balay 
23934a2ae208SSatish Balay #undef __FUNCT__
23944a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2395dcf5cc72SBarry Smith /*XXXXX@
2396a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2397a30f8f8cSSatish Balay 
2398a30f8f8cSSatish Balay    Input Parameters:
2399a30f8f8cSSatish Balay .  mat  - the matrix
2400a30f8f8cSSatish Balay .  fact - factor
2401a30f8f8cSSatish Balay 
2402a30f8f8cSSatish Balay    Collective on Mat
2403a30f8f8cSSatish Balay 
2404a30f8f8cSSatish Balay    Level: advanced
2405a30f8f8cSSatish Balay 
2406a30f8f8cSSatish Balay   Notes:
2407a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2408a30f8f8cSSatish Balay 
2409a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2410a30f8f8cSSatish Balay 
2411a30f8f8cSSatish Balay .seealso: MatSetOption()
2412dcf5cc72SBarry Smith @XXXXX*/
2413dcf5cc72SBarry Smith 
241424d5174aSHong Zhang 
24154a2ae208SSatish Balay #undef __FUNCT__
2416985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2417985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
241824d5174aSHong Zhang {
241924d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2420f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2421ca54ac64SHong Zhang   PetscReal      atmp;
242287828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2423dfbe8321SBarry Smith   PetscErrorCode ierr;
24241302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24251302d50aSBarry Smith   PetscMPIInt    rank,size;
24261302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
242787828ca2SBarry Smith   PetscScalar    *va;
24288a1c53f2SBarry Smith   MatScalar      *ba;
2429f4c0e9e4SHong Zhang   MPI_Status     stat;
243024d5174aSHong Zhang 
243124d5174aSHong Zhang   PetscFunctionBegin;
2432985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2433985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24341ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2435f4c0e9e4SHong Zhang 
24367adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24377adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2438f4c0e9e4SHong Zhang 
2439d0f46423SBarry Smith   bs   = A->rmap->bs;
2440f4c0e9e4SHong Zhang   mbs  = a->mbs;
2441f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2442f4c0e9e4SHong Zhang   ba   = b->a;
2443f4c0e9e4SHong Zhang   bi   = b->i;
2444f4c0e9e4SHong Zhang   bj   = b->j;
2445f4c0e9e4SHong Zhang 
2446f4c0e9e4SHong Zhang   /* find ownerships */
2447d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2448f4c0e9e4SHong Zhang 
2449f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245082502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2451ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2452f4c0e9e4SHong Zhang 
2453f4c0e9e4SHong Zhang   /* row_max for B */
2454b8475685SHong Zhang   if (rank != size-1){
2455f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2456f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2457f4c0e9e4SHong Zhang       brow  = bs*i;
2458f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2459f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2460f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2461ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246204d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2463f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2464f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2465ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2466ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2467f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2468f4c0e9e4SHong Zhang           }
2469f4c0e9e4SHong Zhang         }
2470f4c0e9e4SHong Zhang         bj++;
2471f4c0e9e4SHong Zhang       }
2472f4c0e9e4SHong Zhang     }
2473f4c0e9e4SHong Zhang 
2474f4c0e9e4SHong Zhang     /* send values to its owners */
2475f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2476f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2477ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24787adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2479ca54ac64SHong Zhang     }
2480f4c0e9e4SHong Zhang   }
2481f4c0e9e4SHong Zhang 
2482f4c0e9e4SHong Zhang   /* receive values */
2483ca54ac64SHong Zhang   if (rank){
2484f4c0e9e4SHong Zhang     rvalues = work;
2485ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2486f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24877adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2488f4c0e9e4SHong Zhang       /* process values */
2489f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2490ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2491f4c0e9e4SHong Zhang       }
2492f4c0e9e4SHong Zhang     }
2493ca54ac64SHong Zhang   }
2494f4c0e9e4SHong Zhang 
24951ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2496ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
249724d5174aSHong Zhang   PetscFunctionReturn(0);
249824d5174aSHong Zhang }
24992798e883SHong Zhang 
25002798e883SHong Zhang #undef __FUNCT__
250141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
250241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25032798e883SHong Zhang {
25042798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2505dfbe8321SBarry Smith   PetscErrorCode ierr;
2506d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2507fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2508ffe4fb16SHong Zhang   Vec            bb1;
2509ffe4fb16SHong Zhang 
2510ffe4fb16SHong Zhang   PetscFunctionBegin;
251177431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2512b75cf396SBarry Smith   if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2513ffe4fb16SHong Zhang 
2514a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
251541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2516a2b30743SBarry Smith     PetscFunctionReturn(0);
2517a2b30743SBarry Smith   }
2518a2b30743SBarry Smith 
2519ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2520ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
252141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2522ffe4fb16SHong Zhang       its--;
2523ffe4fb16SHong Zhang     }
2524ffe4fb16SHong Zhang 
2525ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2526ffe4fb16SHong Zhang     while (its--){
2527ffe4fb16SHong Zhang 
2528ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2529ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2530ffe4fb16SHong Zhang 
2531ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25321ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25331ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2534ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25351ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2536ffe4fb16SHong Zhang 
2537efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2538ffe4fb16SHong Zhang 
2539ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25401ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25411ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2542ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25431ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2544ffe4fb16SHong Zhang 
2545ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2546fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2547ffe4fb16SHong Zhang 
2548ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25491ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25501ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2551ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2552ffe4fb16SHong Zhang 
2553ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2554ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2555ffe4fb16SHong Zhang 
2556ffe4fb16SHong Zhang       /* local diagonal sweep */
255741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2558ffe4fb16SHong Zhang     }
2559ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2560fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2562fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2564fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2565fa22f6d0SBarry Smith     Vec               xx1;
2566fa22f6d0SBarry Smith     PetscTruth        hasop;
256720f1ed55SBarry Smith     const PetscScalar *diag;
2568887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
256920f1ed55SBarry Smith     PetscInt          i,n;
2570fa22f6d0SBarry Smith 
2571fa22f6d0SBarry Smith     if (!mat->xx1) {
2572fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2573fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2574fa22f6d0SBarry Smith     }
2575fa22f6d0SBarry Smith     xx1 = mat->xx1;
2576fa22f6d0SBarry Smith     bb1 = mat->bb1;
2577fa22f6d0SBarry Smith 
257841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2579fa22f6d0SBarry Smith 
2580fa22f6d0SBarry Smith     if (!mat->diag) {
2581effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2582fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2583fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2584fa22f6d0SBarry Smith     }
2585fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2586fa22f6d0SBarry Smith 
2587fa22f6d0SBarry Smith     if (hasop) {
2588fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2589887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259020f1ed55SBarry Smith     } else {
259120f1ed55SBarry Smith       /*
259220f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
259320f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2594887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259520f1ed55SBarry Smith       */
259620f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
259720f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
259820f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
259920f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
260020f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2601887ee2caSBarry Smith       if (omega == 1.0) {
260220f1ed55SBarry Smith 	for (i=0; i<n; i++) {
260320f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
260420f1ed55SBarry Smith 	}
260520f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2606887ee2caSBarry Smith       } else {
2607887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2608887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2609887ee2caSBarry Smith 	}
2610887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2611887ee2caSBarry Smith       }
261220f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
261320f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
261420f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
261520f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
261620f1ed55SBarry Smith     }
2617fa22f6d0SBarry Smith 
2618fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2619fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2620fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2621fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2622fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2623fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2624fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2625fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2626fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2627fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2628effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2629fa22f6d0SBarry Smith 
2630fa22f6d0SBarry Smith     /* local sweep */
263141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2632fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2633ffe4fb16SHong Zhang   } else {
2634ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2635ffe4fb16SHong Zhang   }
2636ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2637ffe4fb16SHong Zhang }
2638ffe4fb16SHong Zhang 
2639ffe4fb16SHong Zhang #undef __FUNCT__
264041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
264141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2642ffe4fb16SHong Zhang {
2643ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2644dfbe8321SBarry Smith   PetscErrorCode ierr;
26452798e883SHong Zhang   Vec            lvec1,bb1;
26462798e883SHong Zhang 
26472798e883SHong Zhang   PetscFunctionBegin;
264877431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2649b75cf396SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26502798e883SHong Zhang 
2651c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26522798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
265341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26542798e883SHong Zhang       its--;
26552798e883SHong Zhang     }
26562798e883SHong Zhang 
26572798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26582798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26592798e883SHong Zhang     while (its--){
2660ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26612798e883SHong Zhang 
26622798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26632798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2664efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26652798e883SHong Zhang 
2666ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26672798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2668ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26692798e883SHong Zhang 
26702798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2671efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26722798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26732798e883SHong Zhang 
2674ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26752798e883SHong Zhang 
2676c14dc6b6SHong Zhang       /* diagonal sweep */
267741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26782798e883SHong Zhang     }
26792798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26802798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2681c14dc6b6SHong Zhang   } else {
2682c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2683c14dc6b6SHong Zhang   }
26842798e883SHong Zhang   PetscFunctionReturn(0);
26852798e883SHong Zhang }
26862798e883SHong Zhang 
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