1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6f3da1532SBarry Smith #include "petscblaslapack.h" 7a30f8f8cSSatish Balay 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay EXTERN_C_BEGIN 254a2ae208SSatish Balay #undef __FUNCT__ 264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 28a30f8f8cSSatish Balay { 29f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 30dfbe8321SBarry Smith PetscErrorCode ierr; 31a30f8f8cSSatish Balay 32a30f8f8cSSatish Balay PetscFunctionBegin; 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 35a30f8f8cSSatish Balay PetscFunctionReturn(0); 36a30f8f8cSSatish Balay } 37a30f8f8cSSatish Balay EXTERN_C_END 38a30f8f8cSSatish Balay 39a30f8f8cSSatish Balay EXTERN_C_BEGIN 404a2ae208SSatish Balay #undef __FUNCT__ 414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 43a30f8f8cSSatish Balay { 44f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 45dfbe8321SBarry Smith PetscErrorCode ierr; 46a30f8f8cSSatish Balay 47a30f8f8cSSatish Balay PetscFunctionBegin; 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 49a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 50a30f8f8cSSatish Balay PetscFunctionReturn(0); 51a30f8f8cSSatish Balay } 52a30f8f8cSSatish Balay EXTERN_C_END 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay 55a30f8f8cSSatish Balay #define CHUNKSIZE 10 56a30f8f8cSSatish Balay 57a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 58a30f8f8cSSatish Balay { \ 59a30f8f8cSSatish Balay \ 60a30f8f8cSSatish Balay brow = row/bs; \ 61a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 62a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 63a30f8f8cSSatish Balay bcol = col/bs; \ 64a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 65a30f8f8cSSatish Balay low = 0; high = nrow; \ 66a30f8f8cSSatish Balay while (high-low > 3) { \ 67a30f8f8cSSatish Balay t = (low+high)/2; \ 68a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 69a30f8f8cSSatish Balay else low = t; \ 70a30f8f8cSSatish Balay } \ 71a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 72a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 73a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 74a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 75a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 76a30f8f8cSSatish Balay else *bap = value; \ 77a30f8f8cSSatish Balay goto a_noinsert; \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay } \ 80a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 81085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 82421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 83a30f8f8cSSatish Balay N = nrow++ - 1; \ 84a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 85a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 86a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 87a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 90a30f8f8cSSatish Balay rp[_i] = bcol; \ 91a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 92a30f8f8cSSatish Balay a_noinsert:; \ 93a30f8f8cSSatish Balay ailen[brow] = nrow; \ 94a30f8f8cSSatish Balay } 95e5e170daSBarry Smith 96a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 97a30f8f8cSSatish Balay { \ 98a30f8f8cSSatish Balay brow = row/bs; \ 99a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 100a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 101a30f8f8cSSatish Balay bcol = col/bs; \ 102a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 103a30f8f8cSSatish Balay low = 0; high = nrow; \ 104a30f8f8cSSatish Balay while (high-low > 3) { \ 105a30f8f8cSSatish Balay t = (low+high)/2; \ 106a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 107a30f8f8cSSatish Balay else low = t; \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 110a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 111a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 112a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 113a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 114a30f8f8cSSatish Balay else *bap = value; \ 115a30f8f8cSSatish Balay goto b_noinsert; \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay } \ 118a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 119085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 120421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 121a30f8f8cSSatish Balay N = nrow++ - 1; \ 122a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 123a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 124a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 125a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 126a30f8f8cSSatish Balay } \ 127a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 128a30f8f8cSSatish Balay rp[_i] = bcol; \ 129a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 130a30f8f8cSSatish Balay b_noinsert:; \ 131a30f8f8cSSatish Balay bilen[brow] = nrow; \ 132a30f8f8cSSatish Balay } 133a30f8f8cSSatish Balay 134a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 135a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 136a30f8f8cSSatish Balay */ 1374a2ae208SSatish Balay #undef __FUNCT__ 138dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 139dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 140a30f8f8cSSatish Balay { 141a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 142a30f8f8cSSatish Balay MatScalar value; 143b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 144dfbe8321SBarry Smith PetscErrorCode ierr; 1451302d50aSBarry Smith PetscInt i,j,row,col; 146d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 147d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 148d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay /* Some Variables required in the macro */ 151a30f8f8cSSatish Balay Mat A = baij->A; 152a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1531302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 154a30f8f8cSSatish Balay MatScalar *aa=a->a; 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay Mat B = baij->B; 157a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1581302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 159a30f8f8cSSatish Balay MatScalar *ba=b->a; 160a30f8f8cSSatish Balay 1611302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1621302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 163a30f8f8cSSatish Balay MatScalar *ap,*bap; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay /* for stash */ 166910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 167910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 168a30f8f8cSSatish Balay 169a30f8f8cSSatish Balay PetscFunctionBegin; 17071fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 171a30f8f8cSSatish Balay if (!baij->donotstash){ 17259ffdab8SBarry Smith if (n > baij->n_loc) { 17359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17759ffdab8SBarry Smith baij->n_loc = n; 17859ffdab8SBarry Smith } 17959ffdab8SBarry Smith in_loc = baij->in_loc; 18059ffdab8SBarry Smith v_loc = baij->v_loc; 181a30f8f8cSSatish Balay } 182a30f8f8cSSatish Balay 183a30f8f8cSSatish Balay for (i=0; i<m; i++) { 184a30f8f8cSSatish Balay if (im[i] < 0) continue; 1852515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 186d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 187a30f8f8cSSatish Balay #endif 188a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 189a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 190a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19201b2bd88SHong Zhang if (a->ignore_ltriangular){ 19301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19401b2bd88SHong Zhang } else { 1954e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19601b2bd88SHong Zhang } 19701b2bd88SHong Zhang } 198a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 199a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 200a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 201a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 202a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 203a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 204a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 205a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2062515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 207d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);} 208a30f8f8cSSatish Balay #endif 209a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 210a30f8f8cSSatish Balay if (mat->was_assembled) { 211a30f8f8cSSatish Balay if (!baij->colmap) { 212653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 213a30f8f8cSSatish Balay } 214a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 215a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21671730473SSatish Balay col = col - 1; 217a30f8f8cSSatish Balay #else 21871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 219a30f8f8cSSatish Balay #endif 220a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 221a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 222a30f8f8cSSatish Balay col = in[j]; 223a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 224a30f8f8cSSatish Balay B = baij->B; 225a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 226a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 227a30f8f8cSSatish Balay ba=b->a; 22871730473SSatish Balay } else col += in[j]%bs; 229a30f8f8cSSatish Balay } else col = in[j]; 230a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 231a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 232a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay } else { /* off processor entry */ 236a30f8f8cSSatish Balay if (!baij->donotstash) { 237a30f8f8cSSatish Balay n_loc = 0; 238a30f8f8cSSatish Balay for (j=0; j<n; j++){ 239f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 240a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 241a30f8f8cSSatish Balay if (roworiented) { 242a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 243a30f8f8cSSatish Balay } else { 244a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay n_loc++; 247a30f8f8cSSatish Balay } 248b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay PetscFunctionReturn(0); 253a30f8f8cSSatish Balay } 254a30f8f8cSSatish Balay 2554a2ae208SSatish Balay #undef __FUNCT__ 256dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 257dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 258a30f8f8cSSatish Balay { 2590880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 260f15d580aSBarry Smith const MatScalar *value; 261f15d580aSBarry Smith MatScalar *barray=baij->barray; 262f3f98c53SJed Brown PetscTruth roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 263dfbe8321SBarry Smith PetscErrorCode ierr; 264899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 265899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 266d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2670880e062SHong Zhang 268a30f8f8cSSatish Balay PetscFunctionBegin; 2690880e062SHong Zhang if(!barray) { 2700880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2710880e062SHong Zhang baij->barray = barray; 2720880e062SHong Zhang } 2730880e062SHong Zhang 2740880e062SHong Zhang if (roworiented) { 2750880e062SHong Zhang stepval = (n-1)*bs; 2760880e062SHong Zhang } else { 2770880e062SHong Zhang stepval = (m-1)*bs; 2780880e062SHong Zhang } 2790880e062SHong Zhang for (i=0; i<m; i++) { 2800880e062SHong Zhang if (im[i] < 0) continue; 2812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 28277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2830880e062SHong Zhang #endif 2840880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2850880e062SHong Zhang row = im[i] - rstart; 2860880e062SHong Zhang for (j=0; j<n; j++) { 287f3f98c53SJed Brown if (im[i] > in[j]) { 288f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 289f3f98c53SJed Brown else SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 290f3f98c53SJed Brown } 2910880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2920880e062SHong Zhang if ((roworiented) && (n == 1)) { 293f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2940880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 295f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2960880e062SHong Zhang } else { /* Here a copy is required */ 2970880e062SHong Zhang if (roworiented) { 2980880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2990880e062SHong Zhang } else { 3000880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3010880e062SHong Zhang } 3020880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3030880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3040880e062SHong Zhang *barray++ = *value++; 3050880e062SHong Zhang } 3060880e062SHong Zhang } 3070880e062SHong Zhang barray -=bs2; 3080880e062SHong Zhang } 3090880e062SHong Zhang 3100880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3110880e062SHong Zhang col = in[j] - cstart; 3120880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3130880e062SHong Zhang } 3140880e062SHong Zhang else if (in[j] < 0) continue; 3152515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 31677431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3170880e062SHong Zhang #endif 3180880e062SHong Zhang else { 3190880e062SHong Zhang if (mat->was_assembled) { 3200880e062SHong Zhang if (!baij->colmap) { 321653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3220880e062SHong Zhang } 3230880e062SHong Zhang 3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3250880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3261302d50aSBarry Smith { PetscInt data; 3270880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3280880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3290880e062SHong Zhang } 3300880e062SHong Zhang #else 3310880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3320880e062SHong Zhang #endif 3330880e062SHong Zhang #endif 3340880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3350880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3360880e062SHong Zhang col = (col - 1)/bs; 3370880e062SHong Zhang #else 3380880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3390880e062SHong Zhang #endif 3400880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3410880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3420880e062SHong Zhang col = in[j]; 3430880e062SHong Zhang } 3440880e062SHong Zhang } 3450880e062SHong Zhang else col = in[j]; 346e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3470880e062SHong Zhang } 3480880e062SHong Zhang } 3490880e062SHong Zhang } else { 3500880e062SHong Zhang if (!baij->donotstash) { 3510880e062SHong Zhang if (roworiented) { 3520880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } else { 3540880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang } 3590880e062SHong Zhang PetscFunctionReturn(0); 360a30f8f8cSSatish Balay } 361a30f8f8cSSatish Balay 3624a2ae208SSatish Balay #undef __FUNCT__ 3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 365a30f8f8cSSatish Balay { 366f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3676849ba73SBarry Smith PetscErrorCode ierr; 368d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 369d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 370a30f8f8cSSatish Balay 371a30f8f8cSSatish Balay PetscFunctionBegin; 372a30f8f8cSSatish Balay for (i=0; i<m; i++) { 37397e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 374d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 375a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 376a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 377a30f8f8cSSatish Balay for (j=0; j<n; j++) { 37897e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 379d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 380a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 381a30f8f8cSSatish Balay col = idxn[j] - bscstart; 382c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } else { 384a30f8f8cSSatish Balay if (!baij->colmap) { 385653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 386a30f8f8cSSatish Balay } 387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 388a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 389a30f8f8cSSatish Balay data --; 390a30f8f8cSSatish Balay #else 391a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 392a30f8f8cSSatish Balay #endif 393a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 394a30f8f8cSSatish Balay else { 395a30f8f8cSSatish Balay col = data + idxn[j]%bs; 396e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay } else { 40129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay PetscFunctionReturn(0); 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay 4074a2ae208SSatish Balay #undef __FUNCT__ 4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 410a30f8f8cSSatish Balay { 411a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 412dfbe8321SBarry Smith PetscErrorCode ierr; 413a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 414a30f8f8cSSatish Balay 415a30f8f8cSSatish Balay PetscFunctionBegin; 416a30f8f8cSSatish Balay if (baij->size == 1) { 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } else { 419a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 420f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 422a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 423a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 424a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4257adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 426a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 427a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4280b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4290b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4300b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4310b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 432899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 433d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4340b8dc8d2SHong Zhang MatScalar *v; 4350b8dc8d2SHong Zhang 43674ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 437d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4380b8dc8d2SHong Zhang /* Amat */ 4390b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4420b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4440b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4450b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4460b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4490b8dc8d2SHong Zhang /* non-diagonal block */ 4500b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang } 4550b8dc8d2SHong Zhang /* Bmat */ 4560b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4570b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4580b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4590b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4600b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4610b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4620b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4630b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4640b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4650b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4660b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 4700b8dc8d2SHong Zhang } 471d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4720b8dc8d2SHong Zhang *norm = 0.0; 473d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4740b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4750b8dc8d2SHong Zhang } 47674ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 47829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay } 481a30f8f8cSSatish Balay PetscFunctionReturn(0); 482a30f8f8cSSatish Balay } 483a30f8f8cSSatish Balay 4844a2ae208SSatish Balay #undef __FUNCT__ 4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 487a30f8f8cSSatish Balay { 488a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 489dfbe8321SBarry Smith PetscErrorCode ierr; 4901302d50aSBarry Smith PetscInt nstash,reallocs; 491a30f8f8cSSatish Balay InsertMode addv; 492a30f8f8cSSatish Balay 493a30f8f8cSSatish Balay PetscFunctionBegin; 494a30f8f8cSSatish Balay if (baij->donotstash) { 495a30f8f8cSSatish Balay PetscFunctionReturn(0); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay 498a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4997adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 500a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 50129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 504a30f8f8cSSatish Balay 505d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5081e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 509a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5101e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 511a30f8f8cSSatish Balay PetscFunctionReturn(0); 512a30f8f8cSSatish Balay } 513a30f8f8cSSatish Balay 5144a2ae208SSatish Balay #undef __FUNCT__ 5154a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 516dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 517a30f8f8cSSatish Balay { 518a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 519a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5206849ba73SBarry Smith PetscErrorCode ierr; 52113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 522e44c0bd4SBarry Smith PetscInt *row,*col; 523e44c0bd4SBarry Smith PetscTruth other_disassembled; 52413f74950SBarry Smith PetscMPIInt n; 525a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 526a30f8f8cSSatish Balay MatScalar *val; 527a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 528a30f8f8cSSatish Balay 52991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 530a30f8f8cSSatish Balay PetscFunctionBegin; 531a30f8f8cSSatish Balay 532a30f8f8cSSatish Balay if (!baij->donotstash) { 533a30f8f8cSSatish Balay while (1) { 534a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 535a30f8f8cSSatish Balay if (!flg) break; 536a30f8f8cSSatish Balay 537a30f8f8cSSatish Balay for (i=0; i<n;) { 538a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 539a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 540a30f8f8cSSatish Balay if (j < n) ncols = j-i; 541a30f8f8cSSatish Balay else ncols = n-i; 542a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 543dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 544a30f8f8cSSatish Balay i = j; 545a30f8f8cSSatish Balay } 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 548a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 549a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 550a30f8f8cSSatish Balay restore the original flags */ 551a30f8f8cSSatish Balay r1 = baij->roworiented; 552a30f8f8cSSatish Balay r2 = a->roworiented; 55391c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 554a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 555a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 557a30f8f8cSSatish Balay while (1) { 558a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 559a30f8f8cSSatish Balay if (!flg) break; 560a30f8f8cSSatish Balay 561a30f8f8cSSatish Balay for (i=0; i<n;) { 562a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 563a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 564a30f8f8cSSatish Balay if (j < n) ncols = j-i; 565a30f8f8cSSatish Balay else ncols = n-i; 566dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 567a30f8f8cSSatish Balay i = j; 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 571a30f8f8cSSatish Balay baij->roworiented = r1; 572a30f8f8cSSatish Balay a->roworiented = r2; 57391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 574a30f8f8cSSatish Balay } 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 577a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 578a30f8f8cSSatish Balay 579a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 580a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 581a30f8f8cSSatish Balay /* 582a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 583a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 584a30f8f8cSSatish Balay */ 585a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5867adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 587a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 588c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay } 591a30f8f8cSSatish Balay 592a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59340781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 594a30f8f8cSSatish Balay } 59591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 596a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 597a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 598a30f8f8cSSatish Balay 59974ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 600a30f8f8cSSatish Balay baij->rowvalues = 0; 6015222a1afSHong Zhang 602a30f8f8cSSatish Balay PetscFunctionReturn(0); 603a30f8f8cSSatish Balay } 604a30f8f8cSSatish Balay 605dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6064a2ae208SSatish Balay #undef __FUNCT__ 6074a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6086849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 609a30f8f8cSSatish Balay { 610a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 611dfbe8321SBarry Smith PetscErrorCode ierr; 612d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6131302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61432077d6dSBarry Smith PetscTruth iascii,isdraw; 615b0a32e0cSBarry Smith PetscViewer sviewer; 616f3ef73ceSBarry Smith PetscViewerFormat format; 617a30f8f8cSSatish Balay 618a30f8f8cSSatish Balay PetscFunctionBegin; 61932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 620fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 62132077d6dSBarry Smith if (iascii) { 622b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 623456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 624a30f8f8cSSatish Balay MatInfo info; 6257adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 628*e6dd01d4SJed Brown rank,mat->rmap->N,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 629a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 630*e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 631a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 632*e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 633b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63407d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 635a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 636a30f8f8cSSatish Balay PetscFunctionReturn(0); 637fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 639a30f8f8cSSatish Balay PetscFunctionReturn(0); 640c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 641c1490034SHong Zhang PetscFunctionReturn(0); 642a30f8f8cSSatish Balay } 643a30f8f8cSSatish Balay } 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay if (isdraw) { 646b0a32e0cSBarry Smith PetscDraw draw; 647a30f8f8cSSatish Balay PetscTruth isnull; 648b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 649b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay if (size == 1) { 6537adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 654a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } else { 656a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 657a30f8f8cSSatish Balay Mat A; 65865d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65965d70643SHong Zhang Mat_SeqBAIJ *Bloc; 660d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 661a30f8f8cSSatish Balay MatScalar *a; 662a30f8f8cSSatish Balay 663f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6647adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 665a30f8f8cSSatish Balay if (!rank) { 666f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 667a30f8f8cSSatish Balay } else { 668f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 669a30f8f8cSSatish Balay } 670f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 671d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 67252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay /* copy over the A part */ 67565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 676a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6771302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 678a30f8f8cSSatish Balay 679a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 680e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 681a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 682a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 683e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 684a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 685dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 686a30f8f8cSSatish Balay col++; a += bs; 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay /* copy over the B part */ 69165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 693a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 694e9f7bc9eSHong Zhang 695e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 696a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 697a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 698a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 699a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 700799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 701a30f8f8cSSatish Balay col++; a += bs; 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay } 705a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 706a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 707a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 708a30f8f8cSSatish Balay /* 709a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 710b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 711a30f8f8cSSatish Balay */ 712b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71365d70643SHong Zhang if (!rank) { 7147adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 719a30f8f8cSSatish Balay } 720a30f8f8cSSatish Balay PetscFunctionReturn(0); 721a30f8f8cSSatish Balay } 722a30f8f8cSSatish Balay 7234a2ae208SSatish Balay #undef __FUNCT__ 7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 726a30f8f8cSSatish Balay { 727dfbe8321SBarry Smith PetscErrorCode ierr; 72832077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay PetscFunctionBegin; 73132077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 732fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 733b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 734fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 736a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 737a30f8f8cSSatish Balay } else { 7381302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay PetscFunctionReturn(0); 741a30f8f8cSSatish Balay } 742a30f8f8cSSatish Balay 7434a2ae208SSatish Balay #undef __FUNCT__ 7444a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 745dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 746a30f8f8cSSatish Balay { 747a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 748dfbe8321SBarry Smith PetscErrorCode ierr; 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay PetscFunctionBegin; 751a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 752d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 753a30f8f8cSSatish Balay #endif 754a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 756a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 758a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7599c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 760a30f8f8cSSatish Balay #else 76105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 762a30f8f8cSSatish Balay #endif 76305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 764a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 765a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76640781036SHong Zhang if (baij->slvec0) { 76740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76940781036SHong Zhang } 77040781036SHong Zhang if (baij->slvec1) { 77140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 77240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77440781036SHong Zhang } 77540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 7765755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77705b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 779fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 780fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 781fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 78265460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE) 78305b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 784a30f8f8cSSatish Balay #endif 78559ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78659ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 787899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 789901853e0SKris Buschelman 790dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 793901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 794901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 795a30f8f8cSSatish Balay PetscFunctionReturn(0); 796a30f8f8cSSatish Balay } 797a30f8f8cSSatish Balay 7984a2ae208SSatish Balay #undef __FUNCT__ 799547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 800547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 801547795f9SHong Zhang { 802547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 803547795f9SHong Zhang PetscErrorCode ierr; 804547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 805547795f9SHong Zhang PetscScalar *x,*from; 806547795f9SHong Zhang 807547795f9SHong Zhang PetscFunctionBegin; 808547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 809547795f9SHong Zhang if (nt != A->cmap->n) { 810547795f9SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 811547795f9SHong Zhang } 812547795f9SHong Zhang 813547795f9SHong Zhang /* diagonal part */ 814547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 815547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang /* subdiagonal part */ 818547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang /* copy x into the vec slvec0 */ 821547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 823547795f9SHong Zhang 824547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 827547795f9SHong Zhang 828547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 829547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 830547795f9SHong Zhang /* supperdiagonal part */ 831547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 832547795f9SHong Zhang PetscFunctionReturn(0); 833547795f9SHong Zhang } 834547795f9SHong Zhang 835547795f9SHong Zhang #undef __FUNCT__ 836a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 837dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 838a9d4b620SHong Zhang { 839a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 840dfbe8321SBarry Smith PetscErrorCode ierr; 841d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 842fa22f6d0SBarry Smith PetscScalar *x,*from; 843a9d4b620SHong Zhang 844a9d4b620SHong Zhang PetscFunctionBegin; 845a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 846d0f46423SBarry Smith if (nt != A->cmap->n) { 847a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 848a9d4b620SHong Zhang } 849a9d4b620SHong Zhang 850a9d4b620SHong Zhang /* diagonal part */ 851a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 852fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 853a9d4b620SHong Zhang 854a9d4b620SHong Zhang /* subdiagonal part */ 855a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 856fc165ae2SBarry Smith 857a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8581ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8591ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 860a9d4b620SHong Zhang 861fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 862fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8631ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 864fc165ae2SBarry Smith 865fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 866ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 867a9d4b620SHong Zhang /* supperdiagonal part */ 868a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 869a9d4b620SHong Zhang PetscFunctionReturn(0); 870a9d4b620SHong Zhang } 871a9d4b620SHong Zhang 872a9d4b620SHong Zhang #undef __FUNCT__ 87340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 874dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 875a30f8f8cSSatish Balay { 876a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 877dfbe8321SBarry Smith PetscErrorCode ierr; 8781302d50aSBarry Smith PetscInt nt; 879a30f8f8cSSatish Balay 880a30f8f8cSSatish Balay PetscFunctionBegin; 881a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 882d0f46423SBarry Smith if (nt != A->cmap->n) { 88329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 884a30f8f8cSSatish Balay } 885a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 886d0f46423SBarry Smith if (nt != A->rmap->N) { 88729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 888a30f8f8cSSatish Balay } 88965d70643SHong Zhang 890ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 891b941877fSHong Zhang /* do diagonal part */ 892b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 893b941877fSHong Zhang /* do supperdiagonal part */ 894ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 895b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 896b941877fSHong Zhang /* do subdiagonal part */ 897b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 898ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 899ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 90065d70643SHong Zhang 901a30f8f8cSSatish Balay PetscFunctionReturn(0); 902a30f8f8cSSatish Balay } 903a30f8f8cSSatish Balay 9044a2ae208SSatish Balay #undef __FUNCT__ 9054a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 906dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 907a30f8f8cSSatish Balay { 908de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 909dfbe8321SBarry Smith PetscErrorCode ierr; 910d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 911a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 912a9d4b620SHong Zhang 913a9d4b620SHong Zhang PetscFunctionBegin; 914a9d4b620SHong Zhang /* 9157adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9167adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 917a9d4b620SHong Zhang */ 918a9d4b620SHong Zhang /* diagonal part */ 919a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9202dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 921a9d4b620SHong Zhang 922a9d4b620SHong Zhang /* subdiagonal part */ 923a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 924a9d4b620SHong Zhang 925a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9261ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9271ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 928a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9291ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 930a9d4b620SHong Zhang 931ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9321ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 933ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 934a9d4b620SHong Zhang 935a9d4b620SHong Zhang /* supperdiagonal part */ 936a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 937a9d4b620SHong Zhang 938a9d4b620SHong Zhang PetscFunctionReturn(0); 939a9d4b620SHong Zhang } 940a9d4b620SHong Zhang 941a9d4b620SHong Zhang #undef __FUNCT__ 942a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 943dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 944a9d4b620SHong Zhang { 945a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 946dfbe8321SBarry Smith PetscErrorCode ierr; 947a30f8f8cSSatish Balay 948a30f8f8cSSatish Balay PetscFunctionBegin; 949ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 950b941877fSHong Zhang /* do diagonal part */ 951b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 952b941877fSHong Zhang /* do supperdiagonal part */ 953ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 954de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 955de8b6608SHong Zhang 956b941877fSHong Zhang /* do subdiagonal part */ 957a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 958ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 959ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 960aa482183SHong Zhang 961a30f8f8cSSatish Balay PetscFunctionReturn(0); 962a30f8f8cSSatish Balay } 963a30f8f8cSSatish Balay 964a30f8f8cSSatish Balay /* 965a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 966a30f8f8cSSatish Balay diagonal block 967a30f8f8cSSatish Balay */ 9684a2ae208SSatish Balay #undef __FUNCT__ 9694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 970dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 971a30f8f8cSSatish Balay { 972a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 973dfbe8321SBarry Smith PetscErrorCode ierr; 974a30f8f8cSSatish Balay 975a30f8f8cSSatish Balay PetscFunctionBegin; 976d0f46423SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 977a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 978a30f8f8cSSatish Balay PetscFunctionReturn(0); 979a30f8f8cSSatish Balay } 980a30f8f8cSSatish Balay 9814a2ae208SSatish Balay #undef __FUNCT__ 9824a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 983f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 984a30f8f8cSSatish Balay { 985a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 986dfbe8321SBarry Smith PetscErrorCode ierr; 987a30f8f8cSSatish Balay 988a30f8f8cSSatish Balay PetscFunctionBegin; 989f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 990f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 991a30f8f8cSSatish Balay PetscFunctionReturn(0); 992a30f8f8cSSatish Balay } 993a30f8f8cSSatish Balay 9944a2ae208SSatish Balay #undef __FUNCT__ 9954a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9961302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 997a30f8f8cSSatish Balay { 998d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 999d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1000d0d4cfc2SHong Zhang PetscErrorCode ierr; 1001d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1002d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1003899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1004d0d4cfc2SHong Zhang 1005a30f8f8cSSatish Balay PetscFunctionBegin; 10064eeb8337SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1007d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1008d0d4cfc2SHong Zhang 1009d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1010d0d4cfc2SHong Zhang /* 1011d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1012d0d4cfc2SHong Zhang */ 1013d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1014d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1015d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1016d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1017d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1018d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1019d0d4cfc2SHong Zhang } 102074ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1021d0d4cfc2SHong Zhang } 1022d0d4cfc2SHong Zhang 1023d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1024d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1025d0d4cfc2SHong Zhang 1026d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1027d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1028d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1029d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1030d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1031d0d4cfc2SHong Zhang nztot = nzA + nzB; 1032d0d4cfc2SHong Zhang 1033d0d4cfc2SHong Zhang cmap = mat->garray; 1034d0d4cfc2SHong Zhang if (v || idx) { 1035d0d4cfc2SHong Zhang if (nztot) { 1036d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1037d0d4cfc2SHong Zhang PetscInt imark = -1; 1038d0d4cfc2SHong Zhang if (v) { 1039d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1040d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1041d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1042d0d4cfc2SHong Zhang else break; 1043d0d4cfc2SHong Zhang } 1044d0d4cfc2SHong Zhang imark = i; 1045d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1046d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1047d0d4cfc2SHong Zhang } 1048d0d4cfc2SHong Zhang if (idx) { 1049d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1050d0d4cfc2SHong Zhang if (imark > -1) { 1051d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1052d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang } else { 1055d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1056d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1057d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1058d0d4cfc2SHong Zhang else break; 1059d0d4cfc2SHong Zhang } 1060d0d4cfc2SHong Zhang imark = i; 1061d0d4cfc2SHong Zhang } 1062d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1063d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1064d0d4cfc2SHong Zhang } 1065d0d4cfc2SHong Zhang } else { 1066d0d4cfc2SHong Zhang if (idx) *idx = 0; 1067d0d4cfc2SHong Zhang if (v) *v = 0; 1068d0d4cfc2SHong Zhang } 1069d0d4cfc2SHong Zhang } 1070d0d4cfc2SHong Zhang *nz = nztot; 1071d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1072d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1073a30f8f8cSSatish Balay PetscFunctionReturn(0); 1074a30f8f8cSSatish Balay } 1075a30f8f8cSSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10781302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1079a30f8f8cSSatish Balay { 1080a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1081a30f8f8cSSatish Balay 1082a30f8f8cSSatish Balay PetscFunctionBegin; 1083abc0a331SBarry Smith if (!baij->getrowactive) { 1084abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1085a30f8f8cSSatish Balay } 1086a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1087a30f8f8cSSatish Balay PetscFunctionReturn(0); 1088a30f8f8cSSatish Balay } 1089a30f8f8cSSatish Balay 10904a2ae208SSatish Balay #undef __FUNCT__ 1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1092d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1093d0d4cfc2SHong Zhang { 1094d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1095d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1096d0d4cfc2SHong Zhang 1097d0d4cfc2SHong Zhang PetscFunctionBegin; 1098d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1099d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1100d0d4cfc2SHong Zhang } 1101d0d4cfc2SHong Zhang #undef __FUNCT__ 1102d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1103d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1104d0d4cfc2SHong Zhang { 1105d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1106d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1107d0d4cfc2SHong Zhang 1108d0d4cfc2SHong Zhang PetscFunctionBegin; 1109d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1110d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1111d0d4cfc2SHong Zhang } 1112d0d4cfc2SHong Zhang 1113d0d4cfc2SHong Zhang #undef __FUNCT__ 111499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 111599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 111699cafbc1SBarry Smith { 111799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111899cafbc1SBarry Smith PetscErrorCode ierr; 111999cafbc1SBarry Smith 112099cafbc1SBarry Smith PetscFunctionBegin; 112199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 112299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 112399cafbc1SBarry Smith PetscFunctionReturn(0); 112499cafbc1SBarry Smith } 112599cafbc1SBarry Smith 112699cafbc1SBarry Smith #undef __FUNCT__ 112799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112999cafbc1SBarry Smith { 113099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 113199cafbc1SBarry Smith PetscErrorCode ierr; 113299cafbc1SBarry Smith 113399cafbc1SBarry Smith PetscFunctionBegin; 113499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 113599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 113699cafbc1SBarry Smith PetscFunctionReturn(0); 113799cafbc1SBarry Smith } 113899cafbc1SBarry Smith 113999cafbc1SBarry Smith #undef __FUNCT__ 11404a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1141dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1142a30f8f8cSSatish Balay { 1143a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1144dfbe8321SBarry Smith PetscErrorCode ierr; 1145a30f8f8cSSatish Balay 1146a30f8f8cSSatish Balay PetscFunctionBegin; 1147a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1148a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1149a30f8f8cSSatish Balay PetscFunctionReturn(0); 1150a30f8f8cSSatish Balay } 1151a30f8f8cSSatish Balay 11524a2ae208SSatish Balay #undef __FUNCT__ 11534a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1154dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1155a30f8f8cSSatish Balay { 1156a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1157a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1158dfbe8321SBarry Smith PetscErrorCode ierr; 1159a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1160a30f8f8cSSatish Balay 1161a30f8f8cSSatish Balay PetscFunctionBegin; 1162d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1163a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1164a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1165a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1166a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1168a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1169a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1170a30f8f8cSSatish Balay info->nz_used = isend[0]; 1171a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1172a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1173a30f8f8cSSatish Balay info->memory = isend[3]; 1174a30f8f8cSSatish Balay info->mallocs = isend[4]; 1175a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11767adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1178a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1179a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1180a30f8f8cSSatish Balay info->memory = irecv[3]; 1181a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1182a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11837adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1184a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1185a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1186a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1187a30f8f8cSSatish Balay info->memory = irecv[3]; 1188a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1189a30f8f8cSSatish Balay } else { 119077431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1191a30f8f8cSSatish Balay } 1192a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1193a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1194a30f8f8cSSatish Balay info->factor_mallocs = 0; 1195a30f8f8cSSatish Balay PetscFunctionReturn(0); 1196a30f8f8cSSatish Balay } 1197a30f8f8cSSatish Balay 11984a2ae208SSatish Balay #undef __FUNCT__ 11994a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 12004e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1201a30f8f8cSSatish Balay { 1202a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1203d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1204dfbe8321SBarry Smith PetscErrorCode ierr; 1205a30f8f8cSSatish Balay 1206a30f8f8cSSatish Balay PetscFunctionBegin; 1207e98b92d7SKris Buschelman switch (op) { 1208512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1209e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 121028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1211a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1212e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12134e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12144e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1215e98b92d7SKris Buschelman break; 1216e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12174e0d8c25SBarry Smith a->roworiented = flg; 12184e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12194e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1220e98b92d7SKris Buschelman break; 12214e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1222290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1223e98b92d7SKris Buschelman break; 1224e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12254e0d8c25SBarry Smith a->donotstash = flg; 1226e98b92d7SKris Buschelman break; 1227e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12284e0d8c25SBarry Smith a->ht_flag = flg; 1229e98b92d7SKris Buschelman break; 12309a4540c5SBarry Smith case MAT_HERMITIAN: 1231547795f9SHong Zhang if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1232eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1233547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1234eeffb40dSHong Zhang break; 123577e54ba9SKris Buschelman case MAT_SYMMETRIC: 1236eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1237eeffb40dSHong Zhang break; 123877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1239eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1240eeffb40dSHong Zhang break; 12419a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12424e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1243290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124477e54ba9SKris Buschelman break; 1245d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12464e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1247d0d4cfc2SHong Zhang break; 1248d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12494e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1250d0d4cfc2SHong Zhang break; 1251d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12524e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1253d0d4cfc2SHong Zhang break; 1254e98b92d7SKris Buschelman default: 1255ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay PetscFunctionReturn(0); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1263a30f8f8cSSatish Balay { 1264dfbe8321SBarry Smith PetscErrorCode ierr; 1265a30f8f8cSSatish Balay PetscFunctionBegin; 1266815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1267999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1268fc4dec0aSBarry Smith } 12698115998fSBarry Smith PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 12724a2ae208SSatish Balay #undef __FUNCT__ 12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1275a30f8f8cSSatish Balay { 1276a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1277a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1278dfbe8321SBarry Smith PetscErrorCode ierr; 12795e90f9d9SHong Zhang PetscInt nv,m,n; 1280b3bf805bSHong Zhang PetscTruth flg; 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay PetscFunctionBegin; 1283a30f8f8cSSatish Balay if (ll != rr){ 1284b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1285b3bf805bSHong Zhang if (!flg) 128629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1287a30f8f8cSSatish Balay } 1288b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1289b3bf805bSHong Zhang 12905e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12915e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1292b3bf805bSHong Zhang 12935e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12945e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12955e90f9d9SHong Zhang 1296ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12975e90f9d9SHong Zhang 12985e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1299a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13005e90f9d9SHong Zhang 13015e90f9d9SHong Zhang /* scale the diagonal part */ 1302a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1303a30f8f8cSSatish Balay 13045e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1305ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay PetscFunctionReturn(0); 1308a30f8f8cSSatish Balay } 1309a30f8f8cSSatish Balay 13104a2ae208SSatish Balay #undef __FUNCT__ 13114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1312dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1313a30f8f8cSSatish Balay { 1314f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1315dfbe8321SBarry Smith PetscErrorCode ierr; 1316a30f8f8cSSatish Balay 1317a30f8f8cSSatish Balay PetscFunctionBegin; 1318a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay PetscFunctionReturn(0); 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay 13226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1323a30f8f8cSSatish Balay 13244a2ae208SSatish Balay #undef __FUNCT__ 13254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1326dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1327a30f8f8cSSatish Balay { 1328a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1329a30f8f8cSSatish Balay Mat a,b,c,d; 1330a30f8f8cSSatish Balay PetscTruth flg; 1331dfbe8321SBarry Smith PetscErrorCode ierr; 1332a30f8f8cSSatish Balay 1333a30f8f8cSSatish Balay PetscFunctionBegin; 1334a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1335a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1336a30f8f8cSSatish Balay 1337a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1338abc0a331SBarry Smith if (flg) { 1339a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay } 13417adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1342a30f8f8cSSatish Balay PetscFunctionReturn(0); 1343a30f8f8cSSatish Balay } 1344a30f8f8cSSatish Balay 13454a2ae208SSatish Balay #undef __FUNCT__ 13463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13473c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13483c896bc6SHong Zhang { 13493c896bc6SHong Zhang PetscErrorCode ierr; 13503c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13513c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13523c896bc6SHong Zhang 13533c896bc6SHong Zhang PetscFunctionBegin; 13543c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13553c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1356d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13573c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1358d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13593c896bc6SHong Zhang } else { 13603c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13613c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13623c896bc6SHong Zhang } 13633c896bc6SHong Zhang PetscFunctionReturn(0); 13643c896bc6SHong Zhang } 13653c896bc6SHong Zhang 13663c896bc6SHong Zhang #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1369273d9f13SBarry Smith { 1370dfbe8321SBarry Smith PetscErrorCode ierr; 1371273d9f13SBarry Smith 1372273d9f13SBarry Smith PetscFunctionBegin; 1373db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1374273d9f13SBarry Smith PetscFunctionReturn(0); 1375273d9f13SBarry Smith } 1376a5e6ed63SBarry Smith 13774fe895cdSHong Zhang #undef __FUNCT__ 13784fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13794fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13804fe895cdSHong Zhang { 13814fe895cdSHong Zhang PetscErrorCode ierr; 13824fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13834fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13844fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13854fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13864fe895cdSHong Zhang 13874fe895cdSHong Zhang PetscFunctionBegin; 13884fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13894fe895cdSHong Zhang PetscScalar alpha = a; 13904fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13914fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13920805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13934fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13944fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13954fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13960805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13974fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13984fe895cdSHong Zhang } else { 1399d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14004fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1401d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14024fe895cdSHong Zhang } 14034fe895cdSHong Zhang PetscFunctionReturn(0); 14044fe895cdSHong Zhang } 14054fe895cdSHong Zhang 1406a5e6ed63SBarry Smith #undef __FUNCT__ 14076363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14086363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14096363de48SJed Brown { 14106363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14116363de48SJed Brown PetscInt rbs,cbs; 14126363de48SJed Brown PetscErrorCode ierr; 14136363de48SJed Brown 14146363de48SJed Brown PetscFunctionBegin; 14156363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14166363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14176363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14186363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 14196363de48SJed Brown if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 14206363de48SJed Brown if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14216363de48SJed Brown PetscFunctionReturn(0); 14226363de48SJed Brown } 14236363de48SJed Brown 14246363de48SJed Brown #undef __FUNCT__ 1425a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14261302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1427a5e6ed63SBarry Smith { 14286849ba73SBarry Smith PetscErrorCode ierr; 14291302d50aSBarry Smith PetscInt i; 1430a5e6ed63SBarry Smith PetscTruth flg; 1431a5e6ed63SBarry Smith 14326849ba73SBarry Smith PetscFunctionBegin; 1433a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1434a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1435a5e6ed63SBarry Smith if (!flg) { 14361302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1437a5e6ed63SBarry Smith } 1438a5e6ed63SBarry Smith } 1439a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1440a5e6ed63SBarry Smith PetscFunctionReturn(0); 1441a5e6ed63SBarry Smith } 1442a5e6ed63SBarry Smith 1443a5e6ed63SBarry Smith 1444a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1445a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1446a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1447a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1448a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1449a9d4b620SHong Zhang MatMult_MPISBAIJ, 145097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1451431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1452431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1453a30f8f8cSSatish Balay 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 145697304618SKris Buschelman /*10*/ 0, 1457a30f8f8cSSatish Balay 0, 1458a30f8f8cSSatish Balay 0, 145941f059aeSBarry Smith MatSOR_MPISBAIJ, 1460a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 146197304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1462a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1463a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1464a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1465a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1467a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1468a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1469a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1470d519adbfSMatthew Knepley /*24*/ 0, 1471a30f8f8cSSatish Balay 0, 1472a30f8f8cSSatish Balay 0, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1476b5df2d14SHong Zhang 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1486a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1487d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1488a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14893c896bc6SHong Zhang MatCopy_MPISBAIJ, 1490d519adbfSMatthew Knepley /*44*/ 0, 1491a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 14956363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500d519adbfSMatthew Knepley /*54*/ 0, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1505d519adbfSMatthew Knepley /*59*/ 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508357abbc8SBarry Smith 0, 150924d5174aSHong Zhang 0, 1510d519adbfSMatthew Knepley /*64*/ 0, 151124d5174aSHong Zhang 0, 151224d5174aSHong Zhang 0, 151324d5174aSHong Zhang 0, 151424d5174aSHong Zhang 0, 1515d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151624d5174aSHong Zhang 0, 151797304618SKris Buschelman 0, 151897304618SKris Buschelman 0, 151997304618SKris Buschelman 0, 1520d519adbfSMatthew Knepley /*74*/ 0, 152197304618SKris Buschelman 0, 152297304618SKris Buschelman 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 1525d519adbfSMatthew Knepley /*79*/ 0, 152697304618SKris Buschelman 0, 152797304618SKris Buschelman 0, 152897304618SKris Buschelman 0, 1529865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1530d519adbfSMatthew Knepley /*84*/ 0, 1531865e5f61SKris Buschelman 0, 1532865e5f61SKris Buschelman 0, 1533865e5f61SKris Buschelman 0, 1534865e5f61SKris Buschelman 0, 1535d519adbfSMatthew Knepley /*89*/ 0, 1536865e5f61SKris Buschelman 0, 1537865e5f61SKris Buschelman 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 1540d519adbfSMatthew Knepley /*94*/ 0, 1541865e5f61SKris Buschelman 0, 1542865e5f61SKris Buschelman 0, 154399cafbc1SBarry Smith 0, 154499cafbc1SBarry Smith 0, 1545d519adbfSMatthew Knepley /*99*/ 0, 154699cafbc1SBarry Smith 0, 154799cafbc1SBarry Smith 0, 154899cafbc1SBarry Smith 0, 154999cafbc1SBarry Smith 0, 1550d519adbfSMatthew Knepley /*104*/0, 155199cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1552d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1553d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1554d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 155599cafbc1SBarry Smith }; 1556a30f8f8cSSatish Balay 1557a30f8f8cSSatish Balay 1558a30f8f8cSSatish Balay EXTERN_C_BEGIN 15594a2ae208SSatish Balay #undef __FUNCT__ 15604a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1561be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1562a30f8f8cSSatish Balay { 1563a30f8f8cSSatish Balay PetscFunctionBegin; 1564a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1565a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1566a30f8f8cSSatish Balay PetscFunctionReturn(0); 1567a30f8f8cSSatish Balay } 1568a30f8f8cSSatish Balay EXTERN_C_END 1569a30f8f8cSSatish Balay 1570273d9f13SBarry Smith EXTERN_C_BEGIN 15714a2ae208SSatish Balay #undef __FUNCT__ 1572a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1573be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1574a23d5eceSKris Buschelman { 1575a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1576dfbe8321SBarry Smith PetscErrorCode ierr; 1577db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1578a23d5eceSKris Buschelman 1579a23d5eceSKris Buschelman PetscFunctionBegin; 1580db4efbfdSBarry Smith if (bs < 0){ 15817adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1582db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15838c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1584db4efbfdSBarry Smith bs = PetscAbs(bs); 1585db4efbfdSBarry Smith } 1586db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 1587db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1588db4efbfdSBarry Smith } 1589db4efbfdSBarry Smith bs = newbs; 1590a23d5eceSKris Buschelman 1591a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1592a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 159377431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 159477431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1595899cda47SBarry Smith 1596d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 159726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1599899cda47SBarry Smith 1600a23d5eceSKris Buschelman if (d_nnz) { 1601d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 160277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1603a23d5eceSKris Buschelman } 1604a23d5eceSKris Buschelman } 1605a23d5eceSKris Buschelman if (o_nnz) { 1606d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 160777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1608a23d5eceSKris Buschelman } 1609a23d5eceSKris Buschelman } 1610a23d5eceSKris Buschelman 1611a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1612d0f46423SBarry Smith mbs = B->rmap->n/bs; 1613d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1614d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1615d0f46423SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1616a23d5eceSKris Buschelman } 1617a23d5eceSKris Buschelman 1618d0f46423SBarry Smith B->rmap->bs = bs; 1619a23d5eceSKris Buschelman b->bs2 = bs*bs; 1620a23d5eceSKris Buschelman b->mbs = mbs; 1621a23d5eceSKris Buschelman b->nbs = mbs; 1622a23d5eceSKris Buschelman b->Mbs = Mbs; 1623a23d5eceSKris Buschelman b->Nbs = Mbs; 1624a23d5eceSKris Buschelman 1625a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1626d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1627a23d5eceSKris Buschelman } 1628d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1629d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1630a23d5eceSKris Buschelman 1631d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1632d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1633a23d5eceSKris Buschelman 1634526dfc15SBarry Smith if (!B->preallocated) { 1635f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1636d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16379c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 163852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1639f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1640d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16414aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 164252e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 164315bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1644526dfc15SBarry Smith } 1645a23d5eceSKris Buschelman 1646526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1647526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1648526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1649a23d5eceSKris Buschelman PetscFunctionReturn(0); 1650a23d5eceSKris Buschelman } 1651a23d5eceSKris Buschelman EXTERN_C_END 1652a23d5eceSKris Buschelman 16535c9eb25fSBarry Smith EXTERN_C_BEGIN 1654611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1655611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*); 1656611f576cSBarry Smith #endif 1657611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16585c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1659611f576cSBarry Smith #endif 1660b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1661b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1662b5e56a35SBarry Smith #endif 16635c9eb25fSBarry Smith EXTERN_C_END 16645c9eb25fSBarry Smith 16650bad9183SKris Buschelman /*MC 1666fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16670bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16680bad9183SKris Buschelman 16690bad9183SKris Buschelman Options Database Keys: 16700bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16710bad9183SKris Buschelman 16720bad9183SKris Buschelman Level: beginner 16730bad9183SKris Buschelman 16740bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16750bad9183SKris Buschelman M*/ 16760bad9183SKris Buschelman 1677a23d5eceSKris Buschelman EXTERN_C_BEGIN 1678a23d5eceSKris Buschelman #undef __FUNCT__ 16794a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1680be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1681b5df2d14SHong Zhang { 1682b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1683dfbe8321SBarry Smith PetscErrorCode ierr; 1684b5df2d14SHong Zhang PetscTruth flg; 1685b5df2d14SHong Zhang 1686b5df2d14SHong Zhang PetscFunctionBegin; 1687b5df2d14SHong Zhang 168838f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1689b0a32e0cSBarry Smith B->data = (void*)b; 1690b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1691b5df2d14SHong Zhang 1692b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1693b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1694b5df2d14SHong Zhang B->mapping = 0; 1695b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1696b5df2d14SHong Zhang 1697b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16987adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16997adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1700b5df2d14SHong Zhang 1701b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1702899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1703b5df2d14SHong Zhang 1704b5df2d14SHong Zhang /* build cache for off array entries formed */ 17057adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1706b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1707b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1708b5df2d14SHong Zhang b->garray = PETSC_NULL; 1709b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1710b5df2d14SHong Zhang 1711b5df2d14SHong Zhang /* stuff used in block assembly */ 1712b5df2d14SHong Zhang b->barray = 0; 1713b5df2d14SHong Zhang 1714b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1715b5df2d14SHong Zhang b->lvec = 0; 1716b5df2d14SHong Zhang b->Mvctx = 0; 171740781036SHong Zhang b->slvec0 = 0; 171840781036SHong Zhang b->slvec0b = 0; 171940781036SHong Zhang b->slvec1 = 0; 172040781036SHong Zhang b->slvec1a = 0; 172140781036SHong Zhang b->slvec1b = 0; 172240781036SHong Zhang b->sMvctx = 0; 1723b5df2d14SHong Zhang 1724b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1725b5df2d14SHong Zhang b->rowindices = 0; 1726b5df2d14SHong Zhang b->rowvalues = 0; 1727b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1728b5df2d14SHong Zhang 1729b5df2d14SHong Zhang /* hash table stuff */ 1730b5df2d14SHong Zhang b->ht = 0; 1731b5df2d14SHong Zhang b->hd = 0; 1732b5df2d14SHong Zhang b->ht_size = 0; 1733b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1734b5df2d14SHong Zhang b->ht_fact = 0; 1735b5df2d14SHong Zhang b->ht_total_ct = 0; 1736b5df2d14SHong Zhang b->ht_insert_ct = 0; 1737b5df2d14SHong Zhang 173859ffdab8SBarry Smith b->in_loc = 0; 173959ffdab8SBarry Smith b->v_loc = 0; 174059ffdab8SBarry Smith b->n_loc = 0; 17417adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17428c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1743b5df2d14SHong Zhang if (flg) { 1744f6275e2eSBarry Smith PetscReal fact = 1.39; 17454e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17468c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1747b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1748b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17491e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1750b5df2d14SHong Zhang } 17518c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17528c07d4e3SBarry Smith 1753b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1754ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1755b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1756b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1757b5e56a35SBarry Smith #endif 1758611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1759ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 17605c9eb25fSBarry Smith "MatGetFactor_mpisbaij_mumps", 17615c9eb25fSBarry Smith MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr); 1762611f576cSBarry Smith #endif 1763611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1764ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 17655c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17665c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1767611f576cSBarry Smith #endif 1768b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1769b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1770b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1771b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1772b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1773b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1774b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1775b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1776b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1777a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1778a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1779a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178023ce1328SBarry Smith B->symmetric = PETSC_TRUE; 178123ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178223ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178323ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 178417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1785b5df2d14SHong Zhang PetscFunctionReturn(0); 1786b5df2d14SHong Zhang } 1787273d9f13SBarry Smith EXTERN_C_END 1788b5df2d14SHong Zhang 1789209238afSKris Buschelman /*MC 1790002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1791209238afSKris Buschelman 1792209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1793209238afSKris Buschelman and MATMPISBAIJ otherwise. 1794209238afSKris Buschelman 1795209238afSKris Buschelman Options Database Keys: 1796209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1797209238afSKris Buschelman 1798209238afSKris Buschelman Level: beginner 1799209238afSKris Buschelman 1800209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1801209238afSKris Buschelman M*/ 1802209238afSKris Buschelman 1803209238afSKris Buschelman EXTERN_C_BEGIN 1804209238afSKris Buschelman #undef __FUNCT__ 1805209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1806be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1807dfbe8321SBarry Smith { 18086849ba73SBarry Smith PetscErrorCode ierr; 18091302d50aSBarry Smith PetscMPIInt size; 1810209238afSKris Buschelman 1811209238afSKris Buschelman PetscFunctionBegin; 18127adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1813209238afSKris Buschelman if (size == 1) { 1814209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1815209238afSKris Buschelman } else { 1816209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1817209238afSKris Buschelman } 1818209238afSKris Buschelman PetscFunctionReturn(0); 1819209238afSKris Buschelman } 1820209238afSKris Buschelman EXTERN_C_END 1821209238afSKris Buschelman 18224a2ae208SSatish Balay #undef __FUNCT__ 18234a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1824b5df2d14SHong Zhang /*@C 1825b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1826b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1827b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1828b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang Collective on Mat 1831b5df2d14SHong Zhang 1832b5df2d14SHong Zhang Input Parameters: 1833b5df2d14SHong Zhang + A - the matrix 1834b5df2d14SHong Zhang . bs - size of blockk 1835b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1836b5df2d14SHong Zhang submatrix (same for all local rows) 1837b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18386d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18396d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18406d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1841b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1842b5df2d14SHong Zhang submatrix (same for all local rows). 1843b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1844b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1845b5df2d14SHong Zhang each block row) or PETSC_NULL. 1846b5df2d14SHong Zhang 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang Options Database Keys: 1849b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1850b5df2d14SHong Zhang block calculations (much slower) 1851b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang Notes: 1854b5df2d14SHong Zhang 1855b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1856b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1857b5df2d14SHong Zhang 185849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 185949a6f317SBarry Smith 1860b5df2d14SHong Zhang Storage Information: 1861b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1862b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1863b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1864b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1867b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1868b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1869b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1870b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1871b5df2d14SHong Zhang 1872aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1873aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1874aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1875aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1876aa95bbe8SBarry Smith 1877b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1878b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1879b5df2d14SHong Zhang 1880b5df2d14SHong Zhang .vb 1881b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1882b5df2d14SHong Zhang ------------------- 1883b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1884b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1885b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1886b5df2d14SHong Zhang ------------------- 1887b5df2d14SHong Zhang .ve 1888b5df2d14SHong Zhang 1889b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1890b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18916d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18926d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1893b5df2d14SHong Zhang 18946d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18956d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1896b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1897b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1898b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1899b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1900b5df2d14SHong Zhang matrices. 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang Level: intermediate 1903b5df2d14SHong Zhang 1904b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1905b5df2d14SHong Zhang 1906b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1907b5df2d14SHong Zhang @*/ 1908be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1909b5df2d14SHong Zhang { 19101302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1911b5df2d14SHong Zhang 1912b5df2d14SHong Zhang PetscFunctionBegin; 1913a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1914a23d5eceSKris Buschelman if (f) { 1915a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1916b5df2d14SHong Zhang } 1917b5df2d14SHong Zhang PetscFunctionReturn(0); 1918b5df2d14SHong Zhang } 1919b5df2d14SHong Zhang 19204a2ae208SSatish Balay #undef __FUNCT__ 19214a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1922a30f8f8cSSatish Balay /*@C 1923a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1924a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1925a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1926a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1927a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1928a30f8f8cSSatish Balay 1929a30f8f8cSSatish Balay Collective on MPI_Comm 1930a30f8f8cSSatish Balay 1931a30f8f8cSSatish Balay Input Parameters: 1932a30f8f8cSSatish Balay + comm - MPI communicator 1933a30f8f8cSSatish Balay . bs - size of blockk 1934a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1935a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1936a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1937a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1938a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1939a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1940a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1941a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1942a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1943a30f8f8cSSatish Balay submatrix (same for all local rows) 1944a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19456d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19466d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19476d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1948a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1949a30f8f8cSSatish Balay submatrix (same for all local rows). 1950a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1951a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1952a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1953a30f8f8cSSatish Balay 1954a30f8f8cSSatish Balay Output Parameter: 1955a30f8f8cSSatish Balay . A - the matrix 1956a30f8f8cSSatish Balay 1957a30f8f8cSSatish Balay Options Database Keys: 1958a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1959a30f8f8cSSatish Balay block calculations (much slower) 1960a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1961a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1962a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1963a30f8f8cSSatish Balay 1964175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1965ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1966175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1967175b88e8SBarry Smith 1968a30f8f8cSSatish Balay Notes: 1969d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19706d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1971d1be2dadSMatthew Knepley 1972a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1973a30f8f8cSSatish Balay (possibly both). 1974a30f8f8cSSatish Balay 1975a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1976a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1977a30f8f8cSSatish Balay 197849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 197949a6f317SBarry Smith 1980a30f8f8cSSatish Balay Storage Information: 1981a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1982a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1983a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1984a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1987a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1988a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1989a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1990a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1991a30f8f8cSSatish Balay 1992a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1993a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay .vb 1996a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1997a30f8f8cSSatish Balay ------------------- 1998a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1999a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2000a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2001a30f8f8cSSatish Balay ------------------- 2002a30f8f8cSSatish Balay .ve 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2005a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20066d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20076d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2008a30f8f8cSSatish Balay 20096d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20106d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2011a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2012a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2013a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2014a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2015a30f8f8cSSatish Balay matrices. 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay Level: intermediate 2018a30f8f8cSSatish Balay 2019a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2020a30f8f8cSSatish Balay 2021a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2022a30f8f8cSSatish Balay @*/ 2023a30f8f8cSSatish Balay 2024be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2025a30f8f8cSSatish Balay { 20266849ba73SBarry Smith PetscErrorCode ierr; 20271302d50aSBarry Smith PetscMPIInt size; 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay PetscFunctionBegin; 2030f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2031f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2032273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2033273d9f13SBarry Smith if (size > 1) { 2034b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2035b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2036273d9f13SBarry Smith } else { 2037273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2038273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2039273d9f13SBarry Smith } 2040a30f8f8cSSatish Balay PetscFunctionReturn(0); 2041a30f8f8cSSatish Balay } 2042a30f8f8cSSatish Balay 2043a30f8f8cSSatish Balay 20444a2ae208SSatish Balay #undef __FUNCT__ 20454a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20466849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2047a30f8f8cSSatish Balay { 2048a30f8f8cSSatish Balay Mat mat; 2049a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2050dfbe8321SBarry Smith PetscErrorCode ierr; 2051d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2052387bc808SHong Zhang PetscScalar *array; 2053a30f8f8cSSatish Balay 2054a30f8f8cSSatish Balay PetscFunctionBegin; 2055a30f8f8cSSatish Balay *newmat = 0; 20567adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2057d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20587adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20591d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 206026283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 206126283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2062e1b6402fSHong Zhang 206382327fa8SHong Zhang mat->factor = matin->factor; 2064273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206582327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20667fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20677fff6886SHong Zhang 2068b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2069a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2070a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2071a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2072a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2073a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2074a30f8f8cSSatish Balay 2075899cda47SBarry Smith 2076a30f8f8cSSatish Balay a->size = oldmat->size; 2077a30f8f8cSSatish Balay a->rank = oldmat->rank; 2078a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2079a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2080a30f8f8cSSatish Balay a->rowindices = 0; 2081a30f8f8cSSatish Balay a->rowvalues = 0; 2082a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2083a30f8f8cSSatish Balay a->barray = 0; 2084899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2085899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2086899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2087899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2088a30f8f8cSSatish Balay 2089a30f8f8cSSatish Balay /* hash table stuff */ 2090a30f8f8cSSatish Balay a->ht = 0; 2091a30f8f8cSSatish Balay a->hd = 0; 2092a30f8f8cSSatish Balay a->ht_size = 0; 2093a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2094a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2095a30f8f8cSSatish Balay a->ht_total_ct = 0; 2096a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2097a30f8f8cSSatish Balay 2098899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2099a30f8f8cSSatish Balay if (oldmat->colmap) { 2100a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2101a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2102a30f8f8cSSatish Balay #else 21031302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21051302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2106a30f8f8cSSatish Balay #endif 2107a30f8f8cSSatish Balay } else a->colmap = 0; 2108387bc808SHong Zhang 2109a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21101302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 211152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21121302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2113a30f8f8cSSatish Balay } else a->garray = 0; 2114a30f8f8cSSatish Balay 2115533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2116a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 211752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2118a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 211952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 212082327fa8SHong Zhang 212182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 212252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2125387bc808SHong Zhang 2126387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21271ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2128387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2129387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21301ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21311ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2132387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21331ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 213652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 213752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 213852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2139387bc808SHong Zhang 2140387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2141387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2142387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 214352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214482327fa8SHong Zhang 2145a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 214652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2147a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 214852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21497adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2150a30f8f8cSSatish Balay *newmat = mat; 2151a30f8f8cSSatish Balay PetscFunctionReturn(0); 2152a30f8f8cSSatish Balay } 2153a30f8f8cSSatish Balay 21544a2ae208SSatish Balay #undef __FUNCT__ 21554a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2156a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2157a30f8f8cSSatish Balay { 2158a30f8f8cSSatish Balay Mat A; 21596849ba73SBarry Smith PetscErrorCode ierr; 216013f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 216187828ca2SBarry Smith PetscScalar *vals,*buf; 2162a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2163a30f8f8cSSatish Balay MPI_Status status; 2164e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 216513f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21662fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21671302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21681302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21691302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 217013f74950SBarry Smith int fd; 2171a30f8f8cSSatish Balay 2172a30f8f8cSSatish Balay PetscFunctionBegin; 217377925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21748c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21758c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2176a30f8f8cSSatish Balay 2177a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2178a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay if (!rank) { 2180b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2181a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2182552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2183a30f8f8cSSatish Balay if (header[3] < 0) { 218429bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2185a30f8f8cSSatish Balay } 2186a30f8f8cSSatish Balay } 2187a30f8f8cSSatish Balay 2188a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2190a30f8f8cSSatish Balay 219129bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2192a30f8f8cSSatish Balay 2193a30f8f8cSSatish Balay /* 2194a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2195a30f8f8cSSatish Balay divisible by the blocksize 2196a30f8f8cSSatish Balay */ 2197a30f8f8cSSatish Balay Mbs = M/bs; 2198a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2199a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2200a30f8f8cSSatish Balay else Mbs++; 2201a30f8f8cSSatish Balay if (extra_rows &&!rank) { 22021e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2203a30f8f8cSSatish Balay } 2204a30f8f8cSSatish Balay 2205a30f8f8cSSatish Balay /* determine ownership of all rows */ 2206a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2207a30f8f8cSSatish Balay m = mbs*bs; 220874ed9c26SBarry Smith ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 2209e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2210e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay rowners[0] = 0; 2212a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2213a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2214a30f8f8cSSatish Balay rstart = rowners[rank]; 2215a30f8f8cSSatish Balay rend = rowners[rank+1]; 2216a30f8f8cSSatish Balay 2217a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22182fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay if (!rank) { 22201302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2223a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2224a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2225a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay } else { 2228a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay } 2230a30f8f8cSSatish Balay 22310222edb1SHong Zhang if (!rank) { /* procs[0] */ 2232a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22331302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22341302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2235a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2236a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2237a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2238a30f8f8cSSatish Balay } 2239a30f8f8cSSatish Balay } 2240a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2241a30f8f8cSSatish Balay 2242a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2243a30f8f8cSSatish Balay maxnz = 0; 2244a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2245a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2246a30f8f8cSSatish Balay } 22471302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay 2249a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2250a30f8f8cSSatish Balay nz = procsnz[0]; 22511302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay mycols = ibuf; 2253a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2254a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2255a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2256a30f8f8cSSatish Balay 2257a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2258a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2259a30f8f8cSSatish Balay nz = procsnz[i]; 2260a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2261a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2262a30f8f8cSSatish Balay } 2263a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2264a30f8f8cSSatish Balay if (size != 1) { 2265a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2266a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2267a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2268a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2269a30f8f8cSSatish Balay } 2270a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22710222edb1SHong Zhang } else { /* procs[i], i>0 */ 2272a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2273a30f8f8cSSatish Balay nz = 0; 2274a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2275a30f8f8cSSatish Balay nz += locrowlens[i]; 2276a30f8f8cSSatish Balay } 22771302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2278a30f8f8cSSatish Balay mycols = ibuf; 2279a30f8f8cSSatish Balay /* receive message of column indices*/ 2280a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2281a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 228229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2283a30f8f8cSSatish Balay } 2284a30f8f8cSSatish Balay 2285a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 228674ed9c26SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 228774ed9c26SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 228874ed9c26SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 228974ed9c26SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 229074ed9c26SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 229174ed9c26SBarry Smith rowcount = 0; 229274ed9c26SBarry Smith nzcount = 0; 2293a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2294a30f8f8cSSatish Balay dcount = 0; 2295a30f8f8cSSatish Balay odcount = 0; 2296a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2297a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2298a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22990222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2300a30f8f8cSSatish Balay if (!mask[tmp]) { 2301a30f8f8cSSatish Balay mask[tmp] = 1; 23020222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23030222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2304a30f8f8cSSatish Balay } 2305a30f8f8cSSatish Balay } 2306a30f8f8cSSatish Balay rowcount++; 2307a30f8f8cSSatish Balay } 2308a30f8f8cSSatish Balay 23090222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23100222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2311a30f8f8cSSatish Balay 2312a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2313a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2314a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2315a30f8f8cSSatish Balay } 2316a30f8f8cSSatish Balay 2317a30f8f8cSSatish Balay /* create our matrix */ 2318f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2319f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 232022191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232117fa8088SHong Zhang ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 232222191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2323a30f8f8cSSatish Balay 2324a30f8f8cSSatish Balay if (!rank) { 232587828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2326a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2327a30f8f8cSSatish Balay nz = procsnz[0]; 2328a30f8f8cSSatish Balay vals = buf; 2329a30f8f8cSSatish Balay mycols = ibuf; 2330a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2331a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2332a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2333a30f8f8cSSatish Balay 2334a30f8f8cSSatish Balay /* insert into matrix */ 2335a30f8f8cSSatish Balay jj = rstart*bs; 2336a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23377e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2338a30f8f8cSSatish Balay mycols += locrowlens[i]; 2339a30f8f8cSSatish Balay vals += locrowlens[i]; 2340a30f8f8cSSatish Balay jj++; 2341a30f8f8cSSatish Balay } 23427e06b45fSHong Zhang 2343a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2344a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2345a30f8f8cSSatish Balay nz = procsnz[i]; 2346a30f8f8cSSatish Balay vals = buf; 2347a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23487adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2349a30f8f8cSSatish Balay } 2350a30f8f8cSSatish Balay /* the last proc */ 2351a30f8f8cSSatish Balay if (size != 1){ 2352a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2353a30f8f8cSSatish Balay vals = buf; 2354a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2355a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23567adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2357a30f8f8cSSatish Balay } 2358a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23597e06b45fSHong Zhang 2360a30f8f8cSSatish Balay } else { 2361a30f8f8cSSatish Balay /* receive numeric values */ 236287828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2363a30f8f8cSSatish Balay 2364a30f8f8cSSatish Balay /* receive message of values*/ 2365a30f8f8cSSatish Balay vals = buf; 2366a30f8f8cSSatish Balay mycols = ibuf; 23677adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2368a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 236929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2370a30f8f8cSSatish Balay 2371a30f8f8cSSatish Balay /* insert into matrix */ 2372a30f8f8cSSatish Balay jj = rstart*bs; 2373a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2374a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2375a30f8f8cSSatish Balay mycols += locrowlens[i]; 2376a30f8f8cSSatish Balay vals += locrowlens[i]; 2377a30f8f8cSSatish Balay jj++; 2378a30f8f8cSSatish Balay } 2379a30f8f8cSSatish Balay } 23807e06b45fSHong Zhang 2381a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2382a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2383a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 238474ed9c26SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 238574ed9c26SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 238674ed9c26SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 2387a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2388a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238922191285SKris Buschelman *newmat = A; 2390a30f8f8cSSatish Balay PetscFunctionReturn(0); 2391a30f8f8cSSatish Balay } 2392a30f8f8cSSatish Balay 23934a2ae208SSatish Balay #undef __FUNCT__ 23944a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2395dcf5cc72SBarry Smith /*XXXXX@ 2396a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2397a30f8f8cSSatish Balay 2398a30f8f8cSSatish Balay Input Parameters: 2399a30f8f8cSSatish Balay . mat - the matrix 2400a30f8f8cSSatish Balay . fact - factor 2401a30f8f8cSSatish Balay 2402a30f8f8cSSatish Balay Collective on Mat 2403a30f8f8cSSatish Balay 2404a30f8f8cSSatish Balay Level: advanced 2405a30f8f8cSSatish Balay 2406a30f8f8cSSatish Balay Notes: 2407a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2408a30f8f8cSSatish Balay 2409a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2410a30f8f8cSSatish Balay 2411a30f8f8cSSatish Balay .seealso: MatSetOption() 2412dcf5cc72SBarry Smith @XXXXX*/ 2413dcf5cc72SBarry Smith 241424d5174aSHong Zhang 24154a2ae208SSatish Balay #undef __FUNCT__ 2416985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2417985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 241824d5174aSHong Zhang { 241924d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2420f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2421ca54ac64SHong Zhang PetscReal atmp; 242287828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2423dfbe8321SBarry Smith PetscErrorCode ierr; 24241302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24251302d50aSBarry Smith PetscMPIInt rank,size; 24261302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 242787828ca2SBarry Smith PetscScalar *va; 24288a1c53f2SBarry Smith MatScalar *ba; 2429f4c0e9e4SHong Zhang MPI_Status stat; 243024d5174aSHong Zhang 243124d5174aSHong Zhang PetscFunctionBegin; 2432985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2433985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24341ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2435f4c0e9e4SHong Zhang 24367adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24377adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2438f4c0e9e4SHong Zhang 2439d0f46423SBarry Smith bs = A->rmap->bs; 2440f4c0e9e4SHong Zhang mbs = a->mbs; 2441f4c0e9e4SHong Zhang Mbs = a->Mbs; 2442f4c0e9e4SHong Zhang ba = b->a; 2443f4c0e9e4SHong Zhang bi = b->i; 2444f4c0e9e4SHong Zhang bj = b->j; 2445f4c0e9e4SHong Zhang 2446f4c0e9e4SHong Zhang /* find ownerships */ 2447d0f46423SBarry Smith rowners_bs = A->rmap->range; 2448f4c0e9e4SHong Zhang 2449f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245082502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2451ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2452f4c0e9e4SHong Zhang 2453f4c0e9e4SHong Zhang /* row_max for B */ 2454b8475685SHong Zhang if (rank != size-1){ 2455f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2456f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2457f4c0e9e4SHong Zhang brow = bs*i; 2458f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2459f4c0e9e4SHong Zhang bcol = bs*(*bj); 2460f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2461ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246204d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2463f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2464f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2465ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2466ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2467f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2468f4c0e9e4SHong Zhang } 2469f4c0e9e4SHong Zhang } 2470f4c0e9e4SHong Zhang bj++; 2471f4c0e9e4SHong Zhang } 2472f4c0e9e4SHong Zhang } 2473f4c0e9e4SHong Zhang 2474f4c0e9e4SHong Zhang /* send values to its owners */ 2475f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2476f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2477ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24787adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2479ca54ac64SHong Zhang } 2480f4c0e9e4SHong Zhang } 2481f4c0e9e4SHong Zhang 2482f4c0e9e4SHong Zhang /* receive values */ 2483ca54ac64SHong Zhang if (rank){ 2484f4c0e9e4SHong Zhang rvalues = work; 2485ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2486f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24877adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2488f4c0e9e4SHong Zhang /* process values */ 2489f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2490ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2491f4c0e9e4SHong Zhang } 2492f4c0e9e4SHong Zhang } 2493ca54ac64SHong Zhang } 2494f4c0e9e4SHong Zhang 24951ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2496ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249724d5174aSHong Zhang PetscFunctionReturn(0); 249824d5174aSHong Zhang } 24992798e883SHong Zhang 25002798e883SHong Zhang #undef __FUNCT__ 250141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 250241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25032798e883SHong Zhang { 25042798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2505dfbe8321SBarry Smith PetscErrorCode ierr; 2506d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 2507fa22f6d0SBarry Smith PetscScalar *x,*b,*ptr,*from; 2508ffe4fb16SHong Zhang Vec bb1; 2509ffe4fb16SHong Zhang 2510ffe4fb16SHong Zhang PetscFunctionBegin; 251177431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2512b75cf396SBarry Smith if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2513ffe4fb16SHong Zhang 2514a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 251541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2516a2b30743SBarry Smith PetscFunctionReturn(0); 2517a2b30743SBarry Smith } 2518a2b30743SBarry Smith 2519ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2520ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 252141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2522ffe4fb16SHong Zhang its--; 2523ffe4fb16SHong Zhang } 2524ffe4fb16SHong Zhang 2525ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2526ffe4fb16SHong Zhang while (its--){ 2527ffe4fb16SHong Zhang 2528ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2529ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2530ffe4fb16SHong Zhang 2531ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25321ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25331ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2534ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25351ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2536ffe4fb16SHong Zhang 2537efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2538ffe4fb16SHong Zhang 2539ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25401ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25411ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2542ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25431ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2544ffe4fb16SHong Zhang 2545ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2546fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2547ffe4fb16SHong Zhang 2548ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25491ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25501ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2551ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2552ffe4fb16SHong Zhang 2553ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2554ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2555ffe4fb16SHong Zhang 2556ffe4fb16SHong Zhang /* local diagonal sweep */ 255741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang } 2559ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2560fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 256141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2562fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 256341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2564fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2565fa22f6d0SBarry Smith Vec xx1; 2566fa22f6d0SBarry Smith PetscTruth hasop; 256720f1ed55SBarry Smith const PetscScalar *diag; 2568887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 256920f1ed55SBarry Smith PetscInt i,n; 2570fa22f6d0SBarry Smith 2571fa22f6d0SBarry Smith if (!mat->xx1) { 2572fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2573fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2574fa22f6d0SBarry Smith } 2575fa22f6d0SBarry Smith xx1 = mat->xx1; 2576fa22f6d0SBarry Smith bb1 = mat->bb1; 2577fa22f6d0SBarry Smith 257841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2579fa22f6d0SBarry Smith 2580fa22f6d0SBarry Smith if (!mat->diag) { 2581effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2582fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2583fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2584fa22f6d0SBarry Smith } 2585fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2586fa22f6d0SBarry Smith 2587fa22f6d0SBarry Smith if (hasop) { 2588fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2589887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 259020f1ed55SBarry Smith } else { 259120f1ed55SBarry Smith /* 259220f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 259320f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2594887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 259520f1ed55SBarry Smith */ 259620f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 259720f1ed55SBarry Smith ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 259820f1ed55SBarry Smith ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 259920f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 260020f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2601887ee2caSBarry Smith if (omega == 1.0) { 260220f1ed55SBarry Smith for (i=0; i<n; i++) { 260320f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 260420f1ed55SBarry Smith } 260520f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2606887ee2caSBarry Smith } else { 2607887ee2caSBarry Smith for (i=0; i<n; i++) { 2608887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2609887ee2caSBarry Smith } 2610887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2611887ee2caSBarry Smith } 261220f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 261320f1ed55SBarry Smith ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 261420f1ed55SBarry Smith ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 261520f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 261620f1ed55SBarry Smith } 2617fa22f6d0SBarry Smith 2618fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2619fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2620fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2621fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2622fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2623fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2624fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2625fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2626fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2627fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2628effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2629fa22f6d0SBarry Smith 2630fa22f6d0SBarry Smith /* local sweep */ 263141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2632fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2633ffe4fb16SHong Zhang } else { 2634ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2635ffe4fb16SHong Zhang } 2636ffe4fb16SHong Zhang PetscFunctionReturn(0); 2637ffe4fb16SHong Zhang } 2638ffe4fb16SHong Zhang 2639ffe4fb16SHong Zhang #undef __FUNCT__ 264041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 264141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2642ffe4fb16SHong Zhang { 2643ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2644dfbe8321SBarry Smith PetscErrorCode ierr; 26452798e883SHong Zhang Vec lvec1,bb1; 26462798e883SHong Zhang 26472798e883SHong Zhang PetscFunctionBegin; 264877431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2649b75cf396SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26502798e883SHong Zhang 2651c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26522798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 265341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26542798e883SHong Zhang its--; 26552798e883SHong Zhang } 26562798e883SHong Zhang 26572798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26582798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26592798e883SHong Zhang while (its--){ 2660ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26612798e883SHong Zhang 26622798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26632798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2664efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26652798e883SHong Zhang 2666ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26672798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2668ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26692798e883SHong Zhang 26702798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2671efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26722798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26732798e883SHong Zhang 2674ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26752798e883SHong Zhang 2676c14dc6b6SHong Zhang /* diagonal sweep */ 267741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26782798e883SHong Zhang } 26792798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26802798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2681c14dc6b6SHong Zhang } else { 2682c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2683c14dc6b6SHong Zhang } 26842798e883SHong Zhang PetscFunctionReturn(0); 26852798e883SHong Zhang } 26862798e883SHong Zhang 2687