xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision e7e72b3d0edcd0d15e7f68c03be08666507fc872)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6f3da1532SBarry Smith #include "petscblaslapack.h"
7a30f8f8cSSatish Balay 
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay EXTERN_C_BEGIN
254a2ae208SSatish Balay #undef __FUNCT__
264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
28a30f8f8cSSatish Balay {
29f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
30dfbe8321SBarry Smith   PetscErrorCode ierr;
31a30f8f8cSSatish Balay 
32a30f8f8cSSatish Balay   PetscFunctionBegin;
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   PetscFunctionReturn(0);
36a30f8f8cSSatish Balay }
37a30f8f8cSSatish Balay EXTERN_C_END
38a30f8f8cSSatish Balay 
39a30f8f8cSSatish Balay EXTERN_C_BEGIN
404a2ae208SSatish Balay #undef __FUNCT__
414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
43a30f8f8cSSatish Balay {
44f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
45dfbe8321SBarry Smith   PetscErrorCode ierr;
46a30f8f8cSSatish Balay 
47a30f8f8cSSatish Balay   PetscFunctionBegin;
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
50a30f8f8cSSatish Balay   PetscFunctionReturn(0);
51a30f8f8cSSatish Balay }
52a30f8f8cSSatish Balay EXTERN_C_END
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay 
55a30f8f8cSSatish Balay #define CHUNKSIZE  10
56a30f8f8cSSatish Balay 
57a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
58a30f8f8cSSatish Balay { \
59a30f8f8cSSatish Balay  \
60a30f8f8cSSatish Balay     brow = row/bs;  \
61a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
62a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
63a30f8f8cSSatish Balay       bcol = col/bs; \
64a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
65a30f8f8cSSatish Balay       low = 0; high = nrow; \
66a30f8f8cSSatish Balay       while (high-low > 3) { \
67a30f8f8cSSatish Balay         t = (low+high)/2; \
68a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
69a30f8f8cSSatish Balay         else              low  = t; \
70a30f8f8cSSatish Balay       } \
71a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
72a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
73a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
74a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
75a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
76a30f8f8cSSatish Balay           else                    *bap  = value;  \
77a30f8f8cSSatish Balay           goto a_noinsert; \
78a30f8f8cSSatish Balay         } \
79a30f8f8cSSatish Balay       } \
80a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
81e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
82421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
83a30f8f8cSSatish Balay       N = nrow++ - 1;  \
84a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
85a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
86a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
87a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
88a30f8f8cSSatish Balay       } \
89a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
90a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
91a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
92a30f8f8cSSatish Balay       a_noinsert:; \
93a30f8f8cSSatish Balay     ailen[brow] = nrow; \
94a30f8f8cSSatish Balay }
95e5e170daSBarry Smith 
96a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
97a30f8f8cSSatish Balay { \
98a30f8f8cSSatish Balay     brow = row/bs;  \
99a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
100a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
101a30f8f8cSSatish Balay       bcol = col/bs; \
102a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
103a30f8f8cSSatish Balay       low = 0; high = nrow; \
104a30f8f8cSSatish Balay       while (high-low > 3) { \
105a30f8f8cSSatish Balay         t = (low+high)/2; \
106a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
107a30f8f8cSSatish Balay         else              low  = t; \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
110a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
111a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
112a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
113a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
114a30f8f8cSSatish Balay           else                    *bap  = value;  \
115a30f8f8cSSatish Balay           goto b_noinsert; \
116a30f8f8cSSatish Balay         } \
117a30f8f8cSSatish Balay       } \
118a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
119e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
120421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
121a30f8f8cSSatish Balay       N = nrow++ - 1;  \
122a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
123a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
124a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
125a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
126a30f8f8cSSatish Balay       } \
127a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
128a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
129a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
130a30f8f8cSSatish Balay       b_noinsert:; \
131a30f8f8cSSatish Balay     bilen[brow] = nrow; \
132a30f8f8cSSatish Balay }
133a30f8f8cSSatish Balay 
134a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
135a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
136a30f8f8cSSatish Balay */
1374a2ae208SSatish Balay #undef __FUNCT__
138dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
139dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
140a30f8f8cSSatish Balay {
141a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
142a30f8f8cSSatish Balay   MatScalar      value;
143b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
144dfbe8321SBarry Smith   PetscErrorCode ierr;
1451302d50aSBarry Smith   PetscInt       i,j,row,col;
146d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
147d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
148d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   /* Some Variables required in the macro */
151a30f8f8cSSatish Balay   Mat            A = baij->A;
152a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1531302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
154a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay   Mat            B = baij->B;
157a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1581302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
159a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
160a30f8f8cSSatish Balay 
1611302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1621302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
163a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   /* for stash */
166910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
167910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
168a30f8f8cSSatish Balay 
169a30f8f8cSSatish Balay   PetscFunctionBegin;
17071fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
171a30f8f8cSSatish Balay   if (!baij->donotstash){
17259ffdab8SBarry Smith     if (n > baij->n_loc) {
17359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17759ffdab8SBarry Smith       baij->n_loc = n;
17859ffdab8SBarry Smith     }
17959ffdab8SBarry Smith     in_loc = baij->in_loc;
18059ffdab8SBarry Smith     v_loc  = baij->v_loc;
181a30f8f8cSSatish Balay   }
182a30f8f8cSSatish Balay 
183a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
184a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1852515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
186e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
187a30f8f8cSSatish Balay #endif
188a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
189a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
190a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19201b2bd88SHong Zhang           if (a->ignore_ltriangular){
19301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19401b2bd88SHong Zhang           } else {
195e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19601b2bd88SHong Zhang           }
19701b2bd88SHong Zhang         }
198a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
199a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
200a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
201a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
202a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
203a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
204a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
205a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2062515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
207e32f2f54SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
208a30f8f8cSSatish Balay #endif
209a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
210a30f8f8cSSatish Balay           if (mat->was_assembled) {
211a30f8f8cSSatish Balay             if (!baij->colmap) {
212653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
213a30f8f8cSSatish Balay             }
214a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
215a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21671730473SSatish Balay             col  = col - 1;
217a30f8f8cSSatish Balay #else
21871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
219a30f8f8cSSatish Balay #endif
220a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
221a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
222a30f8f8cSSatish Balay               col =  in[j];
223a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
224a30f8f8cSSatish Balay               B = baij->B;
225a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
226a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
227a30f8f8cSSatish Balay               ba=b->a;
22871730473SSatish Balay             } else col += in[j]%bs;
229a30f8f8cSSatish Balay           } else col = in[j];
230a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
231a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
232a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
233a30f8f8cSSatish Balay         }
234a30f8f8cSSatish Balay       }
235a30f8f8cSSatish Balay     } else {  /* off processor entry */
236a30f8f8cSSatish Balay       if (!baij->donotstash) {
237a30f8f8cSSatish Balay         n_loc = 0;
238a30f8f8cSSatish Balay         for (j=0; j<n; j++){
239f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
240a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
241a30f8f8cSSatish Balay           if (roworiented) {
242a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
243a30f8f8cSSatish Balay           } else {
244a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
245a30f8f8cSSatish Balay           }
246a30f8f8cSSatish Balay           n_loc++;
247a30f8f8cSSatish Balay         }
248b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
249a30f8f8cSSatish Balay       }
250a30f8f8cSSatish Balay     }
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   PetscFunctionReturn(0);
253a30f8f8cSSatish Balay }
254a30f8f8cSSatish Balay 
2554a2ae208SSatish Balay #undef __FUNCT__
256dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
257dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
258a30f8f8cSSatish Balay {
2590880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
260f15d580aSBarry Smith   const MatScalar *value;
261f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
262f3f98c53SJed Brown   PetscTruth      roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
263dfbe8321SBarry Smith   PetscErrorCode  ierr;
264899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
265899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
266d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2670880e062SHong Zhang 
268a30f8f8cSSatish Balay   PetscFunctionBegin;
2690880e062SHong Zhang   if(!barray) {
2700880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2710880e062SHong Zhang     baij->barray = barray;
2720880e062SHong Zhang   }
2730880e062SHong Zhang 
2740880e062SHong Zhang   if (roworiented) {
2750880e062SHong Zhang     stepval = (n-1)*bs;
2760880e062SHong Zhang   } else {
2770880e062SHong Zhang     stepval = (m-1)*bs;
2780880e062SHong Zhang   }
2790880e062SHong Zhang   for (i=0; i<m; i++) {
2800880e062SHong Zhang     if (im[i] < 0) continue;
2812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
282e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2830880e062SHong Zhang #endif
2840880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2850880e062SHong Zhang       row = im[i] - rstart;
2860880e062SHong Zhang       for (j=0; j<n; j++) {
287f3f98c53SJed Brown         if (im[i] > in[j]) {
288f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
289e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
290f3f98c53SJed Brown         }
2910880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2920880e062SHong Zhang         if ((roworiented) && (n == 1)) {
293f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2940880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
295f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2960880e062SHong Zhang         } else { /* Here a copy is required */
2970880e062SHong Zhang           if (roworiented) {
2980880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2990880e062SHong Zhang           } else {
3000880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3010880e062SHong Zhang           }
3020880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3030880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3040880e062SHong Zhang               *barray++  = *value++;
3050880e062SHong Zhang             }
3060880e062SHong Zhang           }
3070880e062SHong Zhang           barray -=bs2;
3080880e062SHong Zhang         }
3090880e062SHong Zhang 
3100880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3110880e062SHong Zhang           col  = in[j] - cstart;
3120880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3130880e062SHong Zhang         }
3140880e062SHong Zhang         else if (in[j] < 0) continue;
3152515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
316e32f2f54SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3170880e062SHong Zhang #endif
3180880e062SHong Zhang         else {
3190880e062SHong Zhang           if (mat->was_assembled) {
3200880e062SHong Zhang             if (!baij->colmap) {
321653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3220880e062SHong Zhang             }
3230880e062SHong Zhang 
3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3250880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3261302d50aSBarry Smith             { PetscInt data;
3270880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
328e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3290880e062SHong Zhang             }
3300880e062SHong Zhang #else
331e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3320880e062SHong Zhang #endif
3330880e062SHong Zhang #endif
3340880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3350880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3360880e062SHong Zhang             col  = (col - 1)/bs;
3370880e062SHong Zhang #else
3380880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3390880e062SHong Zhang #endif
3400880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3410880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3420880e062SHong Zhang               col =  in[j];
3430880e062SHong Zhang             }
3440880e062SHong Zhang           }
3450880e062SHong Zhang           else col = in[j];
346e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3470880e062SHong Zhang         }
3480880e062SHong Zhang       }
3490880e062SHong Zhang     } else {
3500880e062SHong Zhang       if (!baij->donotstash) {
3510880e062SHong Zhang         if (roworiented) {
3520880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         } else {
3540880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3550880e062SHong Zhang         }
3560880e062SHong Zhang       }
3570880e062SHong Zhang     }
3580880e062SHong Zhang   }
3590880e062SHong Zhang   PetscFunctionReturn(0);
360a30f8f8cSSatish Balay }
361a30f8f8cSSatish Balay 
3624a2ae208SSatish Balay #undef __FUNCT__
3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
365a30f8f8cSSatish Balay {
366f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3676849ba73SBarry Smith   PetscErrorCode ierr;
368d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
369d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
370a30f8f8cSSatish Balay 
371a30f8f8cSSatish Balay   PetscFunctionBegin;
372a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
373e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
374e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
375a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
376a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
377a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
378e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
379e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
380a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
381a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
382c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
383a30f8f8cSSatish Balay         } else {
384a30f8f8cSSatish Balay           if (!baij->colmap) {
385653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
386a30f8f8cSSatish Balay           }
387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
388a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
389a30f8f8cSSatish Balay           data --;
390a30f8f8cSSatish Balay #else
391a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
392a30f8f8cSSatish Balay #endif
393a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
394a30f8f8cSSatish Balay           else {
395a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
396e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
397a30f8f8cSSatish Balay           }
398a30f8f8cSSatish Balay         }
399a30f8f8cSSatish Balay       }
400a30f8f8cSSatish Balay     } else {
401e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
402a30f8f8cSSatish Balay     }
403a30f8f8cSSatish Balay   }
404a30f8f8cSSatish Balay  PetscFunctionReturn(0);
405a30f8f8cSSatish Balay }
406a30f8f8cSSatish Balay 
4074a2ae208SSatish Balay #undef __FUNCT__
4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
410a30f8f8cSSatish Balay {
411a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
412dfbe8321SBarry Smith   PetscErrorCode ierr;
413a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
414a30f8f8cSSatish Balay 
415a30f8f8cSSatish Balay   PetscFunctionBegin;
416a30f8f8cSSatish Balay   if (baij->size == 1) {
417a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
418a30f8f8cSSatish Balay   } else {
419a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
420f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
423a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4257adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
426a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
427a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4280b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4290b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4300b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4310b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
432899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
433d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4340b8dc8d2SHong Zhang       MatScalar    *v;
4350b8dc8d2SHong Zhang 
43674ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
437d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4380b8dc8d2SHong Zhang       /* Amat */
4390b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4420b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4440b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4450b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4460b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4470b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4490b8dc8d2SHong Zhang               /* non-diagonal block */
4500b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4510b8dc8d2SHong Zhang             }
4520b8dc8d2SHong Zhang           }
4530b8dc8d2SHong Zhang         }
4540b8dc8d2SHong Zhang       }
4550b8dc8d2SHong Zhang       /* Bmat */
4560b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4570b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4580b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4590b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4600b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4610b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4620b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4630b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4640b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4650b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4660b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4670b8dc8d2SHong Zhang             }
4680b8dc8d2SHong Zhang           }
4690b8dc8d2SHong Zhang         }
4700b8dc8d2SHong Zhang       }
471d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4720b8dc8d2SHong Zhang       *norm = 0.0;
473d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4740b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4750b8dc8d2SHong Zhang       }
47674ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
477a30f8f8cSSatish Balay     } else {
478e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
479a30f8f8cSSatish Balay     }
480a30f8f8cSSatish Balay   }
481a30f8f8cSSatish Balay   PetscFunctionReturn(0);
482a30f8f8cSSatish Balay }
483a30f8f8cSSatish Balay 
4844a2ae208SSatish Balay #undef __FUNCT__
4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
487a30f8f8cSSatish Balay {
488a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
489dfbe8321SBarry Smith   PetscErrorCode ierr;
4901302d50aSBarry Smith   PetscInt       nstash,reallocs;
491a30f8f8cSSatish Balay   InsertMode     addv;
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   PetscFunctionBegin;
494a30f8f8cSSatish Balay   if (baij->donotstash) {
495a30f8f8cSSatish Balay     PetscFunctionReturn(0);
496a30f8f8cSSatish Balay   }
497a30f8f8cSSatish Balay 
498a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4997adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
500*e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
501a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
502a30f8f8cSSatish Balay 
503d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5081e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
509a30f8f8cSSatish Balay   PetscFunctionReturn(0);
510a30f8f8cSSatish Balay }
511a30f8f8cSSatish Balay 
5124a2ae208SSatish Balay #undef __FUNCT__
5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
515a30f8f8cSSatish Balay {
516a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
517a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5186849ba73SBarry Smith   PetscErrorCode ierr;
51913f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
520e44c0bd4SBarry Smith   PetscInt       *row,*col;
521e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52213f74950SBarry Smith   PetscMPIInt    n;
523a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
524a30f8f8cSSatish Balay   MatScalar      *val;
525a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
526a30f8f8cSSatish Balay 
52791c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
528a30f8f8cSSatish Balay   PetscFunctionBegin;
529a30f8f8cSSatish Balay 
530a30f8f8cSSatish Balay   if (!baij->donotstash) {
531a30f8f8cSSatish Balay     while (1) {
532a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
533a30f8f8cSSatish Balay       if (!flg) break;
534a30f8f8cSSatish Balay 
535a30f8f8cSSatish Balay       for (i=0; i<n;) {
536a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
537a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
538a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
539a30f8f8cSSatish Balay         else       ncols = n-i;
540a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
541dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
542a30f8f8cSSatish Balay         i = j;
543a30f8f8cSSatish Balay       }
544a30f8f8cSSatish Balay     }
545a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
546a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
547a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
548a30f8f8cSSatish Balay        restore the original flags */
549a30f8f8cSSatish Balay     r1 = baij->roworiented;
550a30f8f8cSSatish Balay     r2 = a->roworiented;
55191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
552a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
553a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
555a30f8f8cSSatish Balay     while (1) {
556a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
557a30f8f8cSSatish Balay       if (!flg) break;
558a30f8f8cSSatish Balay 
559a30f8f8cSSatish Balay       for (i=0; i<n;) {
560a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
561a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
562a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
563a30f8f8cSSatish Balay         else       ncols = n-i;
564dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
565a30f8f8cSSatish Balay         i = j;
566a30f8f8cSSatish Balay       }
567a30f8f8cSSatish Balay     }
568a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
569a30f8f8cSSatish Balay     baij->roworiented = r1;
570a30f8f8cSSatish Balay     a->roworiented    = r2;
57191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
572a30f8f8cSSatish Balay   }
573a30f8f8cSSatish Balay 
574a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
576a30f8f8cSSatish Balay 
577a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
578a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
579a30f8f8cSSatish Balay   /*
580a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
581a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
582a30f8f8cSSatish Balay   */
583a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5847adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
586c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
587a30f8f8cSSatish Balay     }
588a30f8f8cSSatish Balay   }
589a30f8f8cSSatish Balay 
590a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
592a30f8f8cSSatish Balay   }
59391c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
594a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
595a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
596a30f8f8cSSatish Balay 
59774ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
598a30f8f8cSSatish Balay   baij->rowvalues = 0;
5995222a1afSHong Zhang 
600a30f8f8cSSatish Balay   PetscFunctionReturn(0);
601a30f8f8cSSatish Balay }
602a30f8f8cSSatish Balay 
603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6044a2ae208SSatish Balay #undef __FUNCT__
6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
607a30f8f8cSSatish Balay {
608a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
609dfbe8321SBarry Smith   PetscErrorCode    ierr;
610d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6111302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61232077d6dSBarry Smith   PetscTruth        iascii,isdraw;
613b0a32e0cSBarry Smith   PetscViewer       sviewer;
614f3ef73ceSBarry Smith   PetscViewerFormat format;
615a30f8f8cSSatish Balay 
616a30f8f8cSSatish Balay   PetscFunctionBegin;
61732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
618fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61932077d6dSBarry Smith   if (iascii) {
620b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
621456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
622a30f8f8cSSatish Balay       MatInfo info;
6237adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
624a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
626d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
627d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
63177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
632b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63307d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
634a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       PetscFunctionReturn(0);
636fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63777431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
638a30f8f8cSSatish Balay       PetscFunctionReturn(0);
639c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
640c1490034SHong Zhang       PetscFunctionReturn(0);
641a30f8f8cSSatish Balay     }
642a30f8f8cSSatish Balay   }
643a30f8f8cSSatish Balay 
644a30f8f8cSSatish Balay   if (isdraw) {
645b0a32e0cSBarry Smith     PetscDraw  draw;
646a30f8f8cSSatish Balay     PetscTruth isnull;
647b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
648b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
649a30f8f8cSSatish Balay   }
650a30f8f8cSSatish Balay 
651a30f8f8cSSatish Balay   if (size == 1) {
6527adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
654a30f8f8cSSatish Balay   } else {
655a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
656a30f8f8cSSatish Balay     Mat          A;
65765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
659d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
660a30f8f8cSSatish Balay     MatScalar    *a;
661a30f8f8cSSatish Balay 
662f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6637adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     if (!rank) {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     } else {
667f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     }
669f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
670d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
67152e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
672a30f8f8cSSatish Balay 
673a30f8f8cSSatish Balay     /* copy over the A part */
67465d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
675a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6761302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
679e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
680a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
681a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
682e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
683a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
684dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
685a30f8f8cSSatish Balay           col++; a += bs;
686a30f8f8cSSatish Balay         }
687a30f8f8cSSatish Balay       }
688a30f8f8cSSatish Balay     }
689a30f8f8cSSatish Balay     /* copy over the B part */
69065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69165d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
692a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
693e9f7bc9eSHong Zhang 
694e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
695a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
696a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
697a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
698a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
699799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
700a30f8f8cSSatish Balay           col++; a += bs;
701a30f8f8cSSatish Balay         }
702a30f8f8cSSatish Balay       }
703a30f8f8cSSatish Balay     }
704a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     /*
708a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
709b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
710a30f8f8cSSatish Balay     */
711b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71265d70643SHong Zhang     if (!rank) {
7137adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
714a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     }
716b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
717a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
718a30f8f8cSSatish Balay   }
719a30f8f8cSSatish Balay   PetscFunctionReturn(0);
720a30f8f8cSSatish Balay }
721a30f8f8cSSatish Balay 
7224a2ae208SSatish Balay #undef __FUNCT__
7234a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
724dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
725a30f8f8cSSatish Balay {
726dfbe8321SBarry Smith   PetscErrorCode ierr;
72732077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
728a30f8f8cSSatish Balay 
729a30f8f8cSSatish Balay   PetscFunctionBegin;
73032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
731fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
732b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
733fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73432077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
735a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
736a30f8f8cSSatish Balay   } else {
737e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
738a30f8f8cSSatish Balay   }
739a30f8f8cSSatish Balay   PetscFunctionReturn(0);
740a30f8f8cSSatish Balay }
741a30f8f8cSSatish Balay 
7424a2ae208SSatish Balay #undef __FUNCT__
7434a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
744dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
745a30f8f8cSSatish Balay {
746a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
747dfbe8321SBarry Smith   PetscErrorCode ierr;
748a30f8f8cSSatish Balay 
749a30f8f8cSSatish Balay   PetscFunctionBegin;
750a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
751d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
752a30f8f8cSSatish Balay #endif
753a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
756a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
757a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7589c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
759a30f8f8cSSatish Balay #else
76005b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
761a30f8f8cSSatish Balay #endif
76205b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
763a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
764a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76540781036SHong Zhang   if (baij->slvec0) {
76640781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76740781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76840781036SHong Zhang   }
76940781036SHong Zhang   if (baij->slvec1) {
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
77140781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77240781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77340781036SHong Zhang   }
77440781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
7755755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77605b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77705b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
778fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
779fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
780fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
78165460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78205b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
783a30f8f8cSSatish Balay #endif
78459ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78559ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
786899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
787a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
788901853e0SKris Buschelman 
789dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
793901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
794a30f8f8cSSatish Balay   PetscFunctionReturn(0);
795a30f8f8cSSatish Balay }
796a30f8f8cSSatish Balay 
7974a2ae208SSatish Balay #undef __FUNCT__
798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
800547795f9SHong Zhang {
801547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
802547795f9SHong Zhang   PetscErrorCode ierr;
803547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
804547795f9SHong Zhang   PetscScalar    *x,*from;
805547795f9SHong Zhang 
806547795f9SHong Zhang   PetscFunctionBegin;
807547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
808*e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
809547795f9SHong Zhang 
810547795f9SHong Zhang   /* diagonal part */
811547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813547795f9SHong Zhang 
814547795f9SHong Zhang   /* subdiagonal part */
815547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* copy x into the vec slvec0 */
818547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
819547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820547795f9SHong Zhang 
821547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824547795f9SHong Zhang 
825547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827547795f9SHong Zhang   /* supperdiagonal part */
828547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829547795f9SHong Zhang   PetscFunctionReturn(0);
830547795f9SHong Zhang }
831547795f9SHong Zhang 
832547795f9SHong Zhang #undef __FUNCT__
833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
835a9d4b620SHong Zhang {
836a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode ierr;
838d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
839fa22f6d0SBarry Smith   PetscScalar    *x,*from;
840a9d4b620SHong Zhang 
841a9d4b620SHong Zhang   PetscFunctionBegin;
842a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
843*e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
844a9d4b620SHong Zhang 
845a9d4b620SHong Zhang   /* diagonal part */
846a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
847fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
848a9d4b620SHong Zhang 
849a9d4b620SHong Zhang   /* subdiagonal part */
850a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
851fc165ae2SBarry Smith 
852a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8531ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8541ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
855a9d4b620SHong Zhang 
856fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
857fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8581ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
859fc165ae2SBarry Smith 
860fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
861ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
862a9d4b620SHong Zhang   /* supperdiagonal part */
863a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
864a9d4b620SHong Zhang   PetscFunctionReturn(0);
865a9d4b620SHong Zhang }
866a9d4b620SHong Zhang 
867a9d4b620SHong Zhang #undef __FUNCT__
86840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
869dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
870a30f8f8cSSatish Balay {
871a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
872dfbe8321SBarry Smith   PetscErrorCode ierr;
8731302d50aSBarry Smith   PetscInt       nt;
874a30f8f8cSSatish Balay 
875a30f8f8cSSatish Balay   PetscFunctionBegin;
876a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
877*e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
878*e7e72b3dSBarry Smith 
879a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
880*e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88165d70643SHong Zhang 
882ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
883b941877fSHong Zhang   /* do diagonal part */
884b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
885b941877fSHong Zhang   /* do supperdiagonal part */
886ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
887b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
888b941877fSHong Zhang   /* do subdiagonal part */
889b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
890ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
891ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89265d70643SHong Zhang 
893a30f8f8cSSatish Balay   PetscFunctionReturn(0);
894a30f8f8cSSatish Balay }
895a30f8f8cSSatish Balay 
8964a2ae208SSatish Balay #undef __FUNCT__
8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
899a30f8f8cSSatish Balay {
900de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
901dfbe8321SBarry Smith   PetscErrorCode ierr;
902d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
903a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
904a9d4b620SHong Zhang 
905a9d4b620SHong Zhang   PetscFunctionBegin;
906a9d4b620SHong Zhang   /*
9077adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9087adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
909a9d4b620SHong Zhang   */
910a9d4b620SHong Zhang   /* diagonal part */
911a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9122dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
913a9d4b620SHong Zhang 
914a9d4b620SHong Zhang   /* subdiagonal part */
915a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
916a9d4b620SHong Zhang 
917a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9181ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9191ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
920a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9211ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
922a9d4b620SHong Zhang 
923ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9241ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
925ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
926a9d4b620SHong Zhang 
927a9d4b620SHong Zhang   /* supperdiagonal part */
928a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
929a9d4b620SHong Zhang 
930a9d4b620SHong Zhang   PetscFunctionReturn(0);
931a9d4b620SHong Zhang }
932a9d4b620SHong Zhang 
933a9d4b620SHong Zhang #undef __FUNCT__
934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
936a9d4b620SHong Zhang {
937a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
938dfbe8321SBarry Smith   PetscErrorCode ierr;
939a30f8f8cSSatish Balay 
940a30f8f8cSSatish Balay   PetscFunctionBegin;
941ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
942b941877fSHong Zhang   /* do diagonal part */
943b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
944b941877fSHong Zhang   /* do supperdiagonal part */
945ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
946de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
947de8b6608SHong Zhang 
948b941877fSHong Zhang   /* do subdiagonal part */
949a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
950ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
951ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
952aa482183SHong Zhang 
953a30f8f8cSSatish Balay   PetscFunctionReturn(0);
954a30f8f8cSSatish Balay }
955a30f8f8cSSatish Balay 
956a30f8f8cSSatish Balay /*
957a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
958a30f8f8cSSatish Balay    diagonal block
959a30f8f8cSSatish Balay */
9604a2ae208SSatish Balay #undef __FUNCT__
9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
963a30f8f8cSSatish Balay {
964a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
965dfbe8321SBarry Smith   PetscErrorCode ierr;
966a30f8f8cSSatish Balay 
967a30f8f8cSSatish Balay   PetscFunctionBegin;
968e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
969a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
970a30f8f8cSSatish Balay   PetscFunctionReturn(0);
971a30f8f8cSSatish Balay }
972a30f8f8cSSatish Balay 
9734a2ae208SSatish Balay #undef __FUNCT__
9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
976a30f8f8cSSatish Balay {
977a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
978dfbe8321SBarry Smith   PetscErrorCode ierr;
979a30f8f8cSSatish Balay 
980a30f8f8cSSatish Balay   PetscFunctionBegin;
981f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
982f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
983a30f8f8cSSatish Balay   PetscFunctionReturn(0);
984a30f8f8cSSatish Balay }
985a30f8f8cSSatish Balay 
9864a2ae208SSatish Balay #undef __FUNCT__
9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
989a30f8f8cSSatish Balay {
990d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
991d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
992d0d4cfc2SHong Zhang   PetscErrorCode ierr;
993d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
994d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
995899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
996d0d4cfc2SHong Zhang 
997a30f8f8cSSatish Balay   PetscFunctionBegin;
998e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
999d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1000d0d4cfc2SHong Zhang 
1001d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1002d0d4cfc2SHong Zhang     /*
1003d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1004d0d4cfc2SHong Zhang     */
1005d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1006d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1007d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1008d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1009d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1010d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1011d0d4cfc2SHong Zhang     }
101274ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1013d0d4cfc2SHong Zhang   }
1014d0d4cfc2SHong Zhang 
1015*e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1016d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1017d0d4cfc2SHong Zhang 
1018d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1019d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1020d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1021d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1022d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1023d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1024d0d4cfc2SHong Zhang 
1025d0d4cfc2SHong Zhang   cmap  = mat->garray;
1026d0d4cfc2SHong Zhang   if (v  || idx) {
1027d0d4cfc2SHong Zhang     if (nztot) {
1028d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1029d0d4cfc2SHong Zhang       PetscInt imark = -1;
1030d0d4cfc2SHong Zhang       if (v) {
1031d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1032d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1033d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1034d0d4cfc2SHong Zhang           else break;
1035d0d4cfc2SHong Zhang         }
1036d0d4cfc2SHong Zhang         imark = i;
1037d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1038d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1039d0d4cfc2SHong Zhang       }
1040d0d4cfc2SHong Zhang       if (idx) {
1041d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1042d0d4cfc2SHong Zhang         if (imark > -1) {
1043d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1044d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1045d0d4cfc2SHong Zhang           }
1046d0d4cfc2SHong Zhang         } else {
1047d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1048d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1049d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1050d0d4cfc2SHong Zhang             else break;
1051d0d4cfc2SHong Zhang           }
1052d0d4cfc2SHong Zhang           imark = i;
1053d0d4cfc2SHong Zhang         }
1054d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1055d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1056d0d4cfc2SHong Zhang       }
1057d0d4cfc2SHong Zhang     } else {
1058d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1059d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1060d0d4cfc2SHong Zhang     }
1061d0d4cfc2SHong Zhang   }
1062d0d4cfc2SHong Zhang   *nz = nztot;
1063d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1064d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1065a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1066a30f8f8cSSatish Balay }
1067a30f8f8cSSatish Balay 
10684a2ae208SSatish Balay #undef __FUNCT__
10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1071a30f8f8cSSatish Balay {
1072a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1073a30f8f8cSSatish Balay 
1074a30f8f8cSSatish Balay   PetscFunctionBegin;
1075*e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1076a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1077a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1078a30f8f8cSSatish Balay }
1079a30f8f8cSSatish Balay 
10804a2ae208SSatish Balay #undef __FUNCT__
1081d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1082d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1083d0d4cfc2SHong Zhang {
1084d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1085d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1086d0d4cfc2SHong Zhang 
1087d0d4cfc2SHong Zhang   PetscFunctionBegin;
1088d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1089d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1090d0d4cfc2SHong Zhang }
1091d0d4cfc2SHong Zhang #undef __FUNCT__
1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1093d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1094d0d4cfc2SHong Zhang {
1095d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1096d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1097d0d4cfc2SHong Zhang 
1098d0d4cfc2SHong Zhang   PetscFunctionBegin;
1099d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1100d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1101d0d4cfc2SHong Zhang }
1102d0d4cfc2SHong Zhang 
1103d0d4cfc2SHong Zhang #undef __FUNCT__
110499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110699cafbc1SBarry Smith {
110799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110899cafbc1SBarry Smith   PetscErrorCode ierr;
110999cafbc1SBarry Smith 
111099cafbc1SBarry Smith   PetscFunctionBegin;
111199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111399cafbc1SBarry Smith   PetscFunctionReturn(0);
111499cafbc1SBarry Smith }
111599cafbc1SBarry Smith 
111699cafbc1SBarry Smith #undef __FUNCT__
111799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111999cafbc1SBarry Smith {
112099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112199cafbc1SBarry Smith   PetscErrorCode ierr;
112299cafbc1SBarry Smith 
112399cafbc1SBarry Smith   PetscFunctionBegin;
112499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112699cafbc1SBarry Smith   PetscFunctionReturn(0);
112799cafbc1SBarry Smith }
112899cafbc1SBarry Smith 
112999cafbc1SBarry Smith #undef __FUNCT__
11304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1131dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1132a30f8f8cSSatish Balay {
1133a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1134dfbe8321SBarry Smith   PetscErrorCode ierr;
1135a30f8f8cSSatish Balay 
1136a30f8f8cSSatish Balay   PetscFunctionBegin;
1137a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1139a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1140a30f8f8cSSatish Balay }
1141a30f8f8cSSatish Balay 
11424a2ae208SSatish Balay #undef __FUNCT__
11434a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1144dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1145a30f8f8cSSatish Balay {
1146a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1147a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1148dfbe8321SBarry Smith   PetscErrorCode ierr;
1149a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1150a30f8f8cSSatish Balay 
1151a30f8f8cSSatish Balay   PetscFunctionBegin;
1152d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1153a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1154a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1155a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1156a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1157a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1158a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1159a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1160a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1161a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1162a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1163a30f8f8cSSatish Balay     info->memory       = isend[3];
1164a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1165a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11667adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1167a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1168a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1169a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1170a30f8f8cSSatish Balay     info->memory       = irecv[3];
1171a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1172a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11737adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1175a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1176a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1177a30f8f8cSSatish Balay     info->memory       = irecv[3];
1178a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1179a30f8f8cSSatish Balay   } else {
1180e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1181a30f8f8cSSatish Balay   }
1182a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1183a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1184a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1185a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1186a30f8f8cSSatish Balay }
1187a30f8f8cSSatish Balay 
11884a2ae208SSatish Balay #undef __FUNCT__
11894a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11904e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1191a30f8f8cSSatish Balay {
1192a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1193d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1194dfbe8321SBarry Smith   PetscErrorCode ierr;
1195a30f8f8cSSatish Balay 
1196a30f8f8cSSatish Balay   PetscFunctionBegin;
1197e98b92d7SKris Buschelman   switch (op) {
1198512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1199e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1201a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1202e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12034e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12044e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1205e98b92d7SKris Buschelman     break;
1206e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12074e0d8c25SBarry Smith     a->roworiented = flg;
12084e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12094e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1210e98b92d7SKris Buschelman     break;
12114e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1212290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12154e0d8c25SBarry Smith     a->donotstash = flg;
1216e98b92d7SKris Buschelman     break;
1217e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12184e0d8c25SBarry Smith     a->ht_flag = flg;
1219e98b92d7SKris Buschelman     break;
12209a4540c5SBarry Smith   case MAT_HERMITIAN:
1221e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1222eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1223547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1224eeffb40dSHong Zhang     break;
122577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1226eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1227eeffb40dSHong Zhang     break;
122877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1229eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1230eeffb40dSHong Zhang     break;
12319a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1232e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1233290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
123477e54ba9SKris Buschelman     break;
1235d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12364e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1237d0d4cfc2SHong Zhang     break;
1238d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12394e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1240d0d4cfc2SHong Zhang     break;
1241d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12424e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1243d0d4cfc2SHong Zhang     break;
1244e98b92d7SKris Buschelman   default:
1245e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1246a30f8f8cSSatish Balay   }
1247a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1248a30f8f8cSSatish Balay }
1249a30f8f8cSSatish Balay 
12504a2ae208SSatish Balay #undef __FUNCT__
12518115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1252fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1253a30f8f8cSSatish Balay {
1254dfbe8321SBarry Smith   PetscErrorCode ierr;
1255a30f8f8cSSatish Balay   PetscFunctionBegin;
1256815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1257999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1258fc4dec0aSBarry Smith   }
12598115998fSBarry Smith   PetscFunctionReturn(0);
1260a30f8f8cSSatish Balay }
1261a30f8f8cSSatish Balay 
12624a2ae208SSatish Balay #undef __FUNCT__
12634a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1264dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1265a30f8f8cSSatish Balay {
1266a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1267a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1268dfbe8321SBarry Smith   PetscErrorCode ierr;
12695e90f9d9SHong Zhang   PetscInt       nv,m,n;
1270b3bf805bSHong Zhang   PetscTruth     flg;
1271a30f8f8cSSatish Balay 
1272a30f8f8cSSatish Balay   PetscFunctionBegin;
1273a30f8f8cSSatish Balay   if (ll != rr){
1274b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1275*e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1276a30f8f8cSSatish Balay   }
1277b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1278b3bf805bSHong Zhang 
12795e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1280e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1281b3bf805bSHong Zhang 
12825e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1283e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12845e90f9d9SHong Zhang 
1285ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12865e90f9d9SHong Zhang 
12875e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1288a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12895e90f9d9SHong Zhang 
12905e90f9d9SHong Zhang   /* scale the diagonal part */
1291a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1292a30f8f8cSSatish Balay 
12935e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1294ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1295a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1296a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1297a30f8f8cSSatish Balay }
1298a30f8f8cSSatish Balay 
12994a2ae208SSatish Balay #undef __FUNCT__
13004a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1301dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1302a30f8f8cSSatish Balay {
1303f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1304dfbe8321SBarry Smith   PetscErrorCode ierr;
1305a30f8f8cSSatish Balay 
1306a30f8f8cSSatish Balay   PetscFunctionBegin;
1307a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1308a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1309a30f8f8cSSatish Balay }
1310a30f8f8cSSatish Balay 
13116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1312a30f8f8cSSatish Balay 
13134a2ae208SSatish Balay #undef __FUNCT__
13144a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1315dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1316a30f8f8cSSatish Balay {
1317a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1318a30f8f8cSSatish Balay   Mat            a,b,c,d;
1319a30f8f8cSSatish Balay   PetscTruth     flg;
1320dfbe8321SBarry Smith   PetscErrorCode ierr;
1321a30f8f8cSSatish Balay 
1322a30f8f8cSSatish Balay   PetscFunctionBegin;
1323a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1324a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1325a30f8f8cSSatish Balay 
1326a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1327abc0a331SBarry Smith   if (flg) {
1328a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1329a30f8f8cSSatish Balay   }
13307adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1331a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1332a30f8f8cSSatish Balay }
1333a30f8f8cSSatish Balay 
13344a2ae208SSatish Balay #undef __FUNCT__
13353c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13363c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13373c896bc6SHong Zhang {
13383c896bc6SHong Zhang   PetscErrorCode ierr;
13393c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13403c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13413c896bc6SHong Zhang 
13423c896bc6SHong Zhang   PetscFunctionBegin;
13433c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13443c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1345d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13463c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1347d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13483c896bc6SHong Zhang   } else {
13493c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13503c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13513c896bc6SHong Zhang   }
13523c896bc6SHong Zhang   PetscFunctionReturn(0);
13533c896bc6SHong Zhang }
13543c896bc6SHong Zhang 
13553c896bc6SHong Zhang #undef __FUNCT__
13564a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1357dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1358273d9f13SBarry Smith {
1359dfbe8321SBarry Smith   PetscErrorCode ierr;
1360273d9f13SBarry Smith 
1361273d9f13SBarry Smith   PetscFunctionBegin;
1362db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1363273d9f13SBarry Smith   PetscFunctionReturn(0);
1364273d9f13SBarry Smith }
1365a5e6ed63SBarry Smith 
13664fe895cdSHong Zhang #undef __FUNCT__
13674fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13684fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13694fe895cdSHong Zhang {
13704fe895cdSHong Zhang   PetscErrorCode ierr;
13714fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13724fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13734fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13744fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13754fe895cdSHong Zhang 
13764fe895cdSHong Zhang   PetscFunctionBegin;
13774fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13784fe895cdSHong Zhang     PetscScalar alpha = a;
13794fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13804fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13810805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13824fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13834fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13844fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13850805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13864fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13874fe895cdSHong Zhang   } else {
1388d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13894fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1390d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13914fe895cdSHong Zhang   }
13924fe895cdSHong Zhang   PetscFunctionReturn(0);
13934fe895cdSHong Zhang }
13944fe895cdSHong Zhang 
1395a5e6ed63SBarry Smith #undef __FUNCT__
13966363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
13976363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
13986363de48SJed Brown {
13996363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14006363de48SJed Brown   PetscInt        rbs,cbs;
14016363de48SJed Brown   PetscErrorCode  ierr;
14026363de48SJed Brown 
14036363de48SJed Brown   PetscFunctionBegin;
14046363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14056363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14066363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14076363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1408e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1409e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14106363de48SJed Brown   PetscFunctionReturn(0);
14116363de48SJed Brown }
14126363de48SJed Brown 
14136363de48SJed Brown #undef __FUNCT__
1414a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14151302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1416a5e6ed63SBarry Smith {
14176849ba73SBarry Smith   PetscErrorCode ierr;
14181302d50aSBarry Smith   PetscInt       i;
1419a5e6ed63SBarry Smith   PetscTruth     flg;
1420a5e6ed63SBarry Smith 
14216849ba73SBarry Smith   PetscFunctionBegin;
1422a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1423a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1424*e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1425a5e6ed63SBarry Smith   }
1426a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1427a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1428a5e6ed63SBarry Smith }
1429a5e6ed63SBarry Smith 
1430a5e6ed63SBarry Smith 
1431a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1432a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1433a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1434a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1435a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1436a9d4b620SHong Zhang        MatMult_MPISBAIJ,
143797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1438431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1439431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1440a30f8f8cSSatish Balay        0,
1441a30f8f8cSSatish Balay        0,
1442a30f8f8cSSatish Balay        0,
144397304618SKris Buschelman /*10*/ 0,
1444a30f8f8cSSatish Balay        0,
1445a30f8f8cSSatish Balay        0,
144641f059aeSBarry Smith        MatSOR_MPISBAIJ,
1447a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
144897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1449a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1450a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1451a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1452a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
145397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1454a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1455a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1456a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1457d519adbfSMatthew Knepley /*24*/ 0,
1458a30f8f8cSSatish Balay        0,
1459a30f8f8cSSatish Balay        0,
1460a30f8f8cSSatish Balay        0,
1461a30f8f8cSSatish Balay        0,
1462d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1463b5df2d14SHong Zhang        0,
1464a30f8f8cSSatish Balay        0,
1465a30f8f8cSSatish Balay        0,
1466a30f8f8cSSatish Balay        0,
1467d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1468a30f8f8cSSatish Balay        0,
1469a30f8f8cSSatish Balay        0,
1470a30f8f8cSSatish Balay        0,
1471a30f8f8cSSatish Balay        0,
1472d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1473a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1474d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1475a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14763c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1477d519adbfSMatthew Knepley /*44*/ 0,
1478a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        0,
14826363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1483a30f8f8cSSatish Balay        0,
1484a30f8f8cSSatish Balay        0,
1485a30f8f8cSSatish Balay        0,
1486a30f8f8cSSatish Balay        0,
1487d519adbfSMatthew Knepley /*54*/ 0,
1488a30f8f8cSSatish Balay        0,
1489a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1492d519adbfSMatthew Knepley /*59*/ 0,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
1495357abbc8SBarry Smith        0,
149624d5174aSHong Zhang        0,
1497d519adbfSMatthew Knepley /*64*/ 0,
149824d5174aSHong Zhang        0,
149924d5174aSHong Zhang        0,
150024d5174aSHong Zhang        0,
150124d5174aSHong Zhang        0,
1502d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
150324d5174aSHong Zhang        0,
150497304618SKris Buschelman        0,
150597304618SKris Buschelman        0,
150697304618SKris Buschelman        0,
1507d519adbfSMatthew Knepley /*74*/ 0,
150897304618SKris Buschelman        0,
150997304618SKris Buschelman        0,
151097304618SKris Buschelman        0,
151197304618SKris Buschelman        0,
1512d519adbfSMatthew Knepley /*79*/ 0,
151397304618SKris Buschelman        0,
151497304618SKris Buschelman        0,
151597304618SKris Buschelman        0,
1516865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1517d519adbfSMatthew Knepley /*84*/ 0,
1518865e5f61SKris Buschelman        0,
1519865e5f61SKris Buschelman        0,
1520865e5f61SKris Buschelman        0,
1521865e5f61SKris Buschelman        0,
1522d519adbfSMatthew Knepley /*89*/ 0,
1523865e5f61SKris Buschelman        0,
1524865e5f61SKris Buschelman        0,
1525865e5f61SKris Buschelman        0,
1526865e5f61SKris Buschelman        0,
1527d519adbfSMatthew Knepley /*94*/ 0,
1528865e5f61SKris Buschelman        0,
1529865e5f61SKris Buschelman        0,
153099cafbc1SBarry Smith        0,
153199cafbc1SBarry Smith        0,
1532d519adbfSMatthew Knepley /*99*/ 0,
153399cafbc1SBarry Smith        0,
153499cafbc1SBarry Smith        0,
153599cafbc1SBarry Smith        0,
153699cafbc1SBarry Smith        0,
1537d519adbfSMatthew Knepley /*104*/0,
153899cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1539d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1540d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1541d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
154299cafbc1SBarry Smith };
1543a30f8f8cSSatish Balay 
1544a30f8f8cSSatish Balay 
1545a30f8f8cSSatish Balay EXTERN_C_BEGIN
15464a2ae208SSatish Balay #undef __FUNCT__
15474a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1548be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1549a30f8f8cSSatish Balay {
1550a30f8f8cSSatish Balay   PetscFunctionBegin;
1551a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1552a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1553a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1554a30f8f8cSSatish Balay }
1555a30f8f8cSSatish Balay EXTERN_C_END
1556a30f8f8cSSatish Balay 
1557273d9f13SBarry Smith EXTERN_C_BEGIN
15584a2ae208SSatish Balay #undef __FUNCT__
1559a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1560be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1561a23d5eceSKris Buschelman {
1562a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1563dfbe8321SBarry Smith   PetscErrorCode ierr;
1564db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1565a23d5eceSKris Buschelman 
1566a23d5eceSKris Buschelman   PetscFunctionBegin;
1567db4efbfdSBarry Smith   if (bs < 0){
15687adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1569db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15708c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1571db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1572db4efbfdSBarry Smith   }
1573*e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1574db4efbfdSBarry Smith   bs = newbs;
1575a23d5eceSKris Buschelman 
1576a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1577a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1578e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1579e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1580899cda47SBarry Smith 
1581d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
158226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
158326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1584899cda47SBarry Smith 
1585a23d5eceSKris Buschelman   if (d_nnz) {
1586d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1587e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1588a23d5eceSKris Buschelman     }
1589a23d5eceSKris Buschelman   }
1590a23d5eceSKris Buschelman   if (o_nnz) {
1591d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1592e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1593a23d5eceSKris Buschelman     }
1594a23d5eceSKris Buschelman   }
1595a23d5eceSKris Buschelman 
1596a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1597d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1598d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1599d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1600e32f2f54SBarry Smith     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1601a23d5eceSKris Buschelman   }
1602a23d5eceSKris Buschelman 
1603d0f46423SBarry Smith   B->rmap->bs  = bs;
1604a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1605a23d5eceSKris Buschelman   b->mbs = mbs;
1606a23d5eceSKris Buschelman   b->nbs = mbs;
1607a23d5eceSKris Buschelman   b->Mbs = Mbs;
1608a23d5eceSKris Buschelman   b->Nbs = Mbs;
1609a23d5eceSKris Buschelman 
1610a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1611d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1612a23d5eceSKris Buschelman   }
1613d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1614d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1615a23d5eceSKris Buschelman 
1616d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1617d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1618a23d5eceSKris Buschelman 
1619526dfc15SBarry Smith   if (!B->preallocated) {
1620f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1621d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16229c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
162352e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1624f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1625d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16264aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
162752e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
162815bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1629526dfc15SBarry Smith   }
1630a23d5eceSKris Buschelman 
1631526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1632526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1633526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1634a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1635a23d5eceSKris Buschelman }
1636a23d5eceSKris Buschelman EXTERN_C_END
1637a23d5eceSKris Buschelman 
16385c9eb25fSBarry Smith EXTERN_C_BEGIN
1639611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1640611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1641611f576cSBarry Smith #endif
1642611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16435c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1644611f576cSBarry Smith #endif
1645b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1646b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1647b5e56a35SBarry Smith #endif
16485c9eb25fSBarry Smith EXTERN_C_END
16495c9eb25fSBarry Smith 
16500bad9183SKris Buschelman /*MC
1651fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16520bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16530bad9183SKris Buschelman 
16540bad9183SKris Buschelman    Options Database Keys:
16550bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16560bad9183SKris Buschelman 
16570bad9183SKris Buschelman   Level: beginner
16580bad9183SKris Buschelman 
16590bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16600bad9183SKris Buschelman M*/
16610bad9183SKris Buschelman 
1662a23d5eceSKris Buschelman EXTERN_C_BEGIN
1663a23d5eceSKris Buschelman #undef __FUNCT__
16644a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1665be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1666b5df2d14SHong Zhang {
1667b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1668dfbe8321SBarry Smith   PetscErrorCode ierr;
1669b5df2d14SHong Zhang   PetscTruth     flg;
1670b5df2d14SHong Zhang 
1671b5df2d14SHong Zhang   PetscFunctionBegin;
1672b5df2d14SHong Zhang 
167338f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1674b0a32e0cSBarry Smith   B->data = (void*)b;
1675b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1676b5df2d14SHong Zhang 
1677b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1678b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1679b5df2d14SHong Zhang   B->mapping         = 0;
1680b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1681b5df2d14SHong Zhang 
1682b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16837adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16847adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1685b5df2d14SHong Zhang 
1686b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1687899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1688b5df2d14SHong Zhang 
1689b5df2d14SHong Zhang   /* build cache for off array entries formed */
16907adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1691b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1692b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1693b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1694b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1695b5df2d14SHong Zhang 
1696b5df2d14SHong Zhang   /* stuff used in block assembly */
1697b5df2d14SHong Zhang   b->barray       = 0;
1698b5df2d14SHong Zhang 
1699b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1700b5df2d14SHong Zhang   b->lvec         = 0;
1701b5df2d14SHong Zhang   b->Mvctx        = 0;
170240781036SHong Zhang   b->slvec0       = 0;
170340781036SHong Zhang   b->slvec0b      = 0;
170440781036SHong Zhang   b->slvec1       = 0;
170540781036SHong Zhang   b->slvec1a      = 0;
170640781036SHong Zhang   b->slvec1b      = 0;
170740781036SHong Zhang   b->sMvctx       = 0;
1708b5df2d14SHong Zhang 
1709b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1710b5df2d14SHong Zhang   b->rowindices   = 0;
1711b5df2d14SHong Zhang   b->rowvalues    = 0;
1712b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1713b5df2d14SHong Zhang 
1714b5df2d14SHong Zhang   /* hash table stuff */
1715b5df2d14SHong Zhang   b->ht           = 0;
1716b5df2d14SHong Zhang   b->hd           = 0;
1717b5df2d14SHong Zhang   b->ht_size      = 0;
1718b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1719b5df2d14SHong Zhang   b->ht_fact      = 0;
1720b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1721b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1722b5df2d14SHong Zhang 
172359ffdab8SBarry Smith   b->in_loc       = 0;
172459ffdab8SBarry Smith   b->v_loc        = 0;
172559ffdab8SBarry Smith   b->n_loc        = 0;
17267adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17278c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1728b5df2d14SHong Zhang     if (flg) {
1729f6275e2eSBarry Smith       PetscReal fact = 1.39;
17304e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17318c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1732b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1733b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17341e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1735b5df2d14SHong Zhang     }
17368c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17378c07d4e3SBarry Smith 
1738b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1739ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1740b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1741b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1742b5e56a35SBarry Smith #endif
1743611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1744ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17455c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17465c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1747611f576cSBarry Smith #endif
1748611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1749ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17505c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17515c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1752611f576cSBarry Smith #endif
1753b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1754b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1755b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1756b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1757b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1758b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1759b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1760b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1761b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1762a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1763a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1764a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
176523ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
176623ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
176723ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
176823ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
176917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1770b5df2d14SHong Zhang   PetscFunctionReturn(0);
1771b5df2d14SHong Zhang }
1772273d9f13SBarry Smith EXTERN_C_END
1773b5df2d14SHong Zhang 
1774209238afSKris Buschelman /*MC
1775002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1776209238afSKris Buschelman 
1777209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1778209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1779209238afSKris Buschelman 
1780209238afSKris Buschelman    Options Database Keys:
1781209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1782209238afSKris Buschelman 
1783209238afSKris Buschelman   Level: beginner
1784209238afSKris Buschelman 
1785209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1786209238afSKris Buschelman M*/
1787209238afSKris Buschelman 
1788209238afSKris Buschelman EXTERN_C_BEGIN
1789209238afSKris Buschelman #undef __FUNCT__
1790209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1791be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1792dfbe8321SBarry Smith {
17936849ba73SBarry Smith   PetscErrorCode ierr;
17941302d50aSBarry Smith   PetscMPIInt    size;
1795209238afSKris Buschelman 
1796209238afSKris Buschelman   PetscFunctionBegin;
17977adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1798209238afSKris Buschelman   if (size == 1) {
1799209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1800209238afSKris Buschelman   } else {
1801209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1802209238afSKris Buschelman   }
1803209238afSKris Buschelman   PetscFunctionReturn(0);
1804209238afSKris Buschelman }
1805209238afSKris Buschelman EXTERN_C_END
1806209238afSKris Buschelman 
18074a2ae208SSatish Balay #undef __FUNCT__
18084a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1809b5df2d14SHong Zhang /*@C
1810b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1811b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1812b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1813b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1814b5df2d14SHong Zhang 
1815b5df2d14SHong Zhang    Collective on Mat
1816b5df2d14SHong Zhang 
1817b5df2d14SHong Zhang    Input Parameters:
1818b5df2d14SHong Zhang +  A - the matrix
1819b5df2d14SHong Zhang .  bs   - size of blockk
1820b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1821b5df2d14SHong Zhang            submatrix  (same for all local rows)
1822b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18236d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18246d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18256d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1826b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1827b5df2d14SHong Zhang            submatrix (same for all local rows).
1828b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1829b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1830b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1831b5df2d14SHong Zhang 
1832b5df2d14SHong Zhang 
1833b5df2d14SHong Zhang    Options Database Keys:
1834b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1835b5df2d14SHong Zhang                      block calculations (much slower)
1836b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1837b5df2d14SHong Zhang 
1838b5df2d14SHong Zhang    Notes:
1839b5df2d14SHong Zhang 
1840b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1841b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1842b5df2d14SHong Zhang 
184349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
184449a6f317SBarry Smith 
1845b5df2d14SHong Zhang    Storage Information:
1846b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1847b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1848b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1849b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1850b5df2d14SHong Zhang 
1851b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1852b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1853b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1854b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1855b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1856b5df2d14SHong Zhang 
1857aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1858aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1859aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1860aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1861aa95bbe8SBarry Smith 
1862b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1863b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1864b5df2d14SHong Zhang 
1865b5df2d14SHong Zhang .vb
1866b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1867b5df2d14SHong Zhang           -------------------
1868b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1869b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1870b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1871b5df2d14SHong Zhang           -------------------
1872b5df2d14SHong Zhang .ve
1873b5df2d14SHong Zhang 
1874b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1875b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18766d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18776d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1878b5df2d14SHong Zhang 
18796d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18806d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1881b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1882b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1883b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1884b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1885b5df2d14SHong Zhang    matrices.
1886b5df2d14SHong Zhang 
1887b5df2d14SHong Zhang    Level: intermediate
1888b5df2d14SHong Zhang 
1889b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1890b5df2d14SHong Zhang 
1891b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1892b5df2d14SHong Zhang @*/
1893be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1894b5df2d14SHong Zhang {
18951302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1896b5df2d14SHong Zhang 
1897b5df2d14SHong Zhang   PetscFunctionBegin;
1898a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1899a23d5eceSKris Buschelman   if (f) {
1900a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1901b5df2d14SHong Zhang   }
1902b5df2d14SHong Zhang   PetscFunctionReturn(0);
1903b5df2d14SHong Zhang }
1904b5df2d14SHong Zhang 
19054a2ae208SSatish Balay #undef __FUNCT__
19064a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1907a30f8f8cSSatish Balay /*@C
1908a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1909a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1910a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1911a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1912a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1913a30f8f8cSSatish Balay 
1914a30f8f8cSSatish Balay    Collective on MPI_Comm
1915a30f8f8cSSatish Balay 
1916a30f8f8cSSatish Balay    Input Parameters:
1917a30f8f8cSSatish Balay +  comm - MPI communicator
1918a30f8f8cSSatish Balay .  bs   - size of blockk
1919a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1920a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1921a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1922a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1923a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1924a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1925a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1926a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1927a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1928a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1929a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19306d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19316d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19326d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1933a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1934a30f8f8cSSatish Balay            submatrix (same for all local rows).
1935a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1936a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1937a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1938a30f8f8cSSatish Balay 
1939a30f8f8cSSatish Balay    Output Parameter:
1940a30f8f8cSSatish Balay .  A - the matrix
1941a30f8f8cSSatish Balay 
1942a30f8f8cSSatish Balay    Options Database Keys:
1943a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1944a30f8f8cSSatish Balay                      block calculations (much slower)
1945a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1946a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1947a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1948a30f8f8cSSatish Balay 
1949175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1950ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1951175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1952175b88e8SBarry Smith 
1953a30f8f8cSSatish Balay    Notes:
1954d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19556d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1956d1be2dadSMatthew Knepley 
1957a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1958a30f8f8cSSatish Balay    (possibly both).
1959a30f8f8cSSatish Balay 
1960a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1961a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1962a30f8f8cSSatish Balay 
196349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
196449a6f317SBarry Smith 
1965a30f8f8cSSatish Balay    Storage Information:
1966a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1967a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1968a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1969a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1970a30f8f8cSSatish Balay 
1971a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1972a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1973a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1974a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1975a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1978a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1979a30f8f8cSSatish Balay 
1980a30f8f8cSSatish Balay .vb
1981a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1982a30f8f8cSSatish Balay           -------------------
1983a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1984a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1985a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1986a30f8f8cSSatish Balay           -------------------
1987a30f8f8cSSatish Balay .ve
1988a30f8f8cSSatish Balay 
1989a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1990a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19916d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19926d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1993a30f8f8cSSatish Balay 
19946d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19956d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1996a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1997a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1998a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1999a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2000a30f8f8cSSatish Balay    matrices.
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay    Level: intermediate
2003a30f8f8cSSatish Balay 
2004a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2005a30f8f8cSSatish Balay 
2006a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2007a30f8f8cSSatish Balay @*/
2008a30f8f8cSSatish Balay 
2009be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2010a30f8f8cSSatish Balay {
20116849ba73SBarry Smith   PetscErrorCode ierr;
20121302d50aSBarry Smith   PetscMPIInt    size;
2013a30f8f8cSSatish Balay 
2014a30f8f8cSSatish Balay   PetscFunctionBegin;
2015f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2016f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2017273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2018273d9f13SBarry Smith   if (size > 1) {
2019b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2020b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2021273d9f13SBarry Smith   } else {
2022273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2023273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2024273d9f13SBarry Smith   }
2025a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2026a30f8f8cSSatish Balay }
2027a30f8f8cSSatish Balay 
2028a30f8f8cSSatish Balay 
20294a2ae208SSatish Balay #undef __FUNCT__
20304a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20316849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2032a30f8f8cSSatish Balay {
2033a30f8f8cSSatish Balay   Mat            mat;
2034a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2035dfbe8321SBarry Smith   PetscErrorCode ierr;
2036d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2037387bc808SHong Zhang   PetscScalar    *array;
2038a30f8f8cSSatish Balay 
2039a30f8f8cSSatish Balay   PetscFunctionBegin;
2040a30f8f8cSSatish Balay   *newmat       = 0;
20417adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2042d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20437adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20441d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
204526283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
204626283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2047e1b6402fSHong Zhang 
2048d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2049273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
205082327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20517fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20527fff6886SHong Zhang 
2053b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2054a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2055a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2056a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2057a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2058a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2059a30f8f8cSSatish Balay 
2060899cda47SBarry Smith 
2061a30f8f8cSSatish Balay   a->size         = oldmat->size;
2062a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2063a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2064a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2065a30f8f8cSSatish Balay   a->rowindices   = 0;
2066a30f8f8cSSatish Balay   a->rowvalues    = 0;
2067a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2068a30f8f8cSSatish Balay   a->barray       = 0;
2069899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2070899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2071899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2072899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2073a30f8f8cSSatish Balay 
2074a30f8f8cSSatish Balay   /* hash table stuff */
2075a30f8f8cSSatish Balay   a->ht           = 0;
2076a30f8f8cSSatish Balay   a->hd           = 0;
2077a30f8f8cSSatish Balay   a->ht_size      = 0;
2078a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2079a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2080a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2081a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2082a30f8f8cSSatish Balay 
2083899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2084a30f8f8cSSatish Balay   if (oldmat->colmap) {
2085a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2086a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2087a30f8f8cSSatish Balay #else
20881302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
208952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20901302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2091a30f8f8cSSatish Balay #endif
2092a30f8f8cSSatish Balay   } else a->colmap = 0;
2093387bc808SHong Zhang 
2094a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20951302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
209652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20971302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2098a30f8f8cSSatish Balay   } else a->garray = 0;
2099a30f8f8cSSatish Balay 
2100533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
210252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
210452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
210582327fa8SHong Zhang 
210682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
210752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
210882327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
210952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2110387bc808SHong Zhang 
2111387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21121ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2113387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2114387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21151ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21161ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2117387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21181ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
211952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
212152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
212252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
212352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2124387bc808SHong Zhang 
2125387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2126387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2127387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
212852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
212982327fa8SHong Zhang 
2130a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
213152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2132a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
213352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21347adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2135a30f8f8cSSatish Balay   *newmat = mat;
2136a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2137a30f8f8cSSatish Balay }
2138a30f8f8cSSatish Balay 
21394a2ae208SSatish Balay #undef __FUNCT__
21404a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2141a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2142a30f8f8cSSatish Balay {
2143a30f8f8cSSatish Balay   Mat            A;
21446849ba73SBarry Smith   PetscErrorCode ierr;
214513f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
214687828ca2SBarry Smith   PetscScalar    *vals,*buf;
2147a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2148a30f8f8cSSatish Balay   MPI_Status     status;
2149e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
215013f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21512fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21521302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21531302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21541302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
215513f74950SBarry Smith   int            fd;
2156a30f8f8cSSatish Balay 
2157a30f8f8cSSatish Balay   PetscFunctionBegin;
215877925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21598c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21608c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2161a30f8f8cSSatish Balay 
2162a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2163a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2164a30f8f8cSSatish Balay   if (!rank) {
2165b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2166a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2167e32f2f54SBarry Smith     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2168*e7e72b3dSBarry Smith     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2169a30f8f8cSSatish Balay   }
2170a30f8f8cSSatish Balay 
2171a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2172a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2173a30f8f8cSSatish Balay 
2174e32f2f54SBarry Smith   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
2175a30f8f8cSSatish Balay 
2176a30f8f8cSSatish Balay   /*
2177a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2178a30f8f8cSSatish Balay      divisible by the blocksize
2179a30f8f8cSSatish Balay   */
2180a30f8f8cSSatish Balay   Mbs        = M/bs;
2181a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2182a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2183a30f8f8cSSatish Balay   else                  Mbs++;
2184a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21851e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2186a30f8f8cSSatish Balay   }
2187a30f8f8cSSatish Balay 
2188a30f8f8cSSatish Balay   /* determine ownership of all rows */
2189a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2190a30f8f8cSSatish Balay   m          = mbs*bs;
219174ed9c26SBarry Smith   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2192e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2193e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay   rowners[0] = 0;
2195a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2196a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2197a30f8f8cSSatish Balay   rstart = rowners[rank];
2198a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2199a30f8f8cSSatish Balay 
2200a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22012fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2202a30f8f8cSSatish Balay   if (!rank) {
22031302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2204a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2206a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2208a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2209a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay   } else {
2211a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay   }
2213a30f8f8cSSatish Balay 
22140222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2215a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22161302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22171302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2218a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2219a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2220a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2221a30f8f8cSSatish Balay       }
2222a30f8f8cSSatish Balay     }
2223a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2224a30f8f8cSSatish Balay 
2225a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2226a30f8f8cSSatish Balay     maxnz = 0;
2227a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2228a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2229a30f8f8cSSatish Balay     }
22301302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay 
2232a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2233a30f8f8cSSatish Balay     nz     = procsnz[0];
22341302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2235a30f8f8cSSatish Balay     mycols = ibuf;
2236a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2237a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2238a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2239a30f8f8cSSatish Balay 
2240a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2241a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2242a30f8f8cSSatish Balay       nz   = procsnz[i];
2243a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2244a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2245a30f8f8cSSatish Balay     }
2246a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2247a30f8f8cSSatish Balay     if (size != 1) {
2248a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2249a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2250a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2251a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay     }
2253a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22540222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2255a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2256a30f8f8cSSatish Balay     nz = 0;
2257a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2258a30f8f8cSSatish Balay       nz += locrowlens[i];
2259a30f8f8cSSatish Balay     }
22601302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2261a30f8f8cSSatish Balay     mycols = ibuf;
2262a30f8f8cSSatish Balay     /* receive message of column indices*/
2263a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2264a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
2265e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2266a30f8f8cSSatish Balay   }
2267a30f8f8cSSatish Balay 
2268a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
226974ed9c26SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
227074ed9c26SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
227174ed9c26SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
227274ed9c26SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
227374ed9c26SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
227474ed9c26SBarry Smith   rowcount = 0;
227574ed9c26SBarry Smith   nzcount  = 0;
2276a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2277a30f8f8cSSatish Balay     dcount  = 0;
2278a30f8f8cSSatish Balay     odcount = 0;
2279a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2280a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2281a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22820222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2283a30f8f8cSSatish Balay         if (!mask[tmp]) {
2284a30f8f8cSSatish Balay           mask[tmp] = 1;
22850222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22860222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2287a30f8f8cSSatish Balay         }
2288a30f8f8cSSatish Balay       }
2289a30f8f8cSSatish Balay       rowcount++;
2290a30f8f8cSSatish Balay     }
2291a30f8f8cSSatish Balay 
22920222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22930222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2294a30f8f8cSSatish Balay 
2295a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2296a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2297a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2298a30f8f8cSSatish Balay   }
2299a30f8f8cSSatish Balay 
2300a30f8f8cSSatish Balay   /* create our matrix */
2301f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2302f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
230322191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
230417fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
230522191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2306a30f8f8cSSatish Balay 
2307a30f8f8cSSatish Balay   if (!rank) {
230887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2309a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2310a30f8f8cSSatish Balay     nz = procsnz[0];
2311a30f8f8cSSatish Balay     vals = buf;
2312a30f8f8cSSatish Balay     mycols = ibuf;
2313a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2314a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2315a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2316a30f8f8cSSatish Balay 
2317a30f8f8cSSatish Balay     /* insert into matrix */
2318a30f8f8cSSatish Balay     jj      = rstart*bs;
2319a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23207e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2321a30f8f8cSSatish Balay       mycols += locrowlens[i];
2322a30f8f8cSSatish Balay       vals   += locrowlens[i];
2323a30f8f8cSSatish Balay       jj++;
2324a30f8f8cSSatish Balay     }
23257e06b45fSHong Zhang 
2326a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2327a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2328a30f8f8cSSatish Balay       nz   = procsnz[i];
2329a30f8f8cSSatish Balay       vals = buf;
2330a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23317adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2332a30f8f8cSSatish Balay     }
2333a30f8f8cSSatish Balay     /* the last proc */
2334a30f8f8cSSatish Balay     if (size != 1){
2335a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2336a30f8f8cSSatish Balay       vals = buf;
2337a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2338a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23397adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2340a30f8f8cSSatish Balay     }
2341a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23427e06b45fSHong Zhang 
2343a30f8f8cSSatish Balay   } else {
2344a30f8f8cSSatish Balay     /* receive numeric values */
234587828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2346a30f8f8cSSatish Balay 
2347a30f8f8cSSatish Balay     /* receive message of values*/
2348a30f8f8cSSatish Balay     vals   = buf;
2349a30f8f8cSSatish Balay     mycols = ibuf;
23507adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2351a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2352e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2353a30f8f8cSSatish Balay 
2354a30f8f8cSSatish Balay     /* insert into matrix */
2355a30f8f8cSSatish Balay     jj      = rstart*bs;
2356a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2357a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay       mycols += locrowlens[i];
2359a30f8f8cSSatish Balay       vals   += locrowlens[i];
2360a30f8f8cSSatish Balay       jj++;
2361a30f8f8cSSatish Balay     }
2362a30f8f8cSSatish Balay   }
23637e06b45fSHong Zhang 
2364a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2365a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
236774ed9c26SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
236874ed9c26SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
236974ed9c26SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2370a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2371a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
237222191285SKris Buschelman   *newmat = A;
2373a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2374a30f8f8cSSatish Balay }
2375a30f8f8cSSatish Balay 
23764a2ae208SSatish Balay #undef __FUNCT__
23774a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2378dcf5cc72SBarry Smith /*XXXXX@
2379a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2380a30f8f8cSSatish Balay 
2381a30f8f8cSSatish Balay    Input Parameters:
2382a30f8f8cSSatish Balay .  mat  - the matrix
2383a30f8f8cSSatish Balay .  fact - factor
2384a30f8f8cSSatish Balay 
2385a30f8f8cSSatish Balay    Collective on Mat
2386a30f8f8cSSatish Balay 
2387a30f8f8cSSatish Balay    Level: advanced
2388a30f8f8cSSatish Balay 
2389a30f8f8cSSatish Balay   Notes:
2390a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2393a30f8f8cSSatish Balay 
2394a30f8f8cSSatish Balay .seealso: MatSetOption()
2395dcf5cc72SBarry Smith @XXXXX*/
2396dcf5cc72SBarry Smith 
239724d5174aSHong Zhang 
23984a2ae208SSatish Balay #undef __FUNCT__
2399985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2400985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
240124d5174aSHong Zhang {
240224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2403f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2404ca54ac64SHong Zhang   PetscReal      atmp;
240587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2406dfbe8321SBarry Smith   PetscErrorCode ierr;
24071302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24081302d50aSBarry Smith   PetscMPIInt    rank,size;
24091302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
241087828ca2SBarry Smith   PetscScalar    *va;
24118a1c53f2SBarry Smith   MatScalar      *ba;
2412f4c0e9e4SHong Zhang   MPI_Status     stat;
241324d5174aSHong Zhang 
241424d5174aSHong Zhang   PetscFunctionBegin;
2415e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2416985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24171ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2418f4c0e9e4SHong Zhang 
24197adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24207adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2421f4c0e9e4SHong Zhang 
2422d0f46423SBarry Smith   bs   = A->rmap->bs;
2423f4c0e9e4SHong Zhang   mbs  = a->mbs;
2424f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2425f4c0e9e4SHong Zhang   ba   = b->a;
2426f4c0e9e4SHong Zhang   bi   = b->i;
2427f4c0e9e4SHong Zhang   bj   = b->j;
2428f4c0e9e4SHong Zhang 
2429f4c0e9e4SHong Zhang   /* find ownerships */
2430d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2431f4c0e9e4SHong Zhang 
2432f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
243382502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2434ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2435f4c0e9e4SHong Zhang 
2436f4c0e9e4SHong Zhang   /* row_max for B */
2437b8475685SHong Zhang   if (rank != size-1){
2438f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2439f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2440f4c0e9e4SHong Zhang       brow  = bs*i;
2441f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2442f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2443f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2444ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
244504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2446f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2447f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2448ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2449ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2450f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2451f4c0e9e4SHong Zhang           }
2452f4c0e9e4SHong Zhang         }
2453f4c0e9e4SHong Zhang         bj++;
2454f4c0e9e4SHong Zhang       }
2455f4c0e9e4SHong Zhang     }
2456f4c0e9e4SHong Zhang 
2457f4c0e9e4SHong Zhang     /* send values to its owners */
2458f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2459f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2460ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24617adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2462ca54ac64SHong Zhang     }
2463f4c0e9e4SHong Zhang   }
2464f4c0e9e4SHong Zhang 
2465f4c0e9e4SHong Zhang   /* receive values */
2466ca54ac64SHong Zhang   if (rank){
2467f4c0e9e4SHong Zhang     rvalues = work;
2468ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2469f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24707adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2471f4c0e9e4SHong Zhang       /* process values */
2472f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2473ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2474f4c0e9e4SHong Zhang       }
2475f4c0e9e4SHong Zhang     }
2476ca54ac64SHong Zhang   }
2477f4c0e9e4SHong Zhang 
24781ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2479ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
248024d5174aSHong Zhang   PetscFunctionReturn(0);
248124d5174aSHong Zhang }
24822798e883SHong Zhang 
24832798e883SHong Zhang #undef __FUNCT__
248441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
248541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24862798e883SHong Zhang {
24872798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2488dfbe8321SBarry Smith   PetscErrorCode ierr;
2489d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2490fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2491ffe4fb16SHong Zhang   Vec            bb1;
2492ffe4fb16SHong Zhang 
2493ffe4fb16SHong Zhang   PetscFunctionBegin;
2494e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2495e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2496ffe4fb16SHong Zhang 
2497a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
249841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2499a2b30743SBarry Smith     PetscFunctionReturn(0);
2500a2b30743SBarry Smith   }
2501a2b30743SBarry Smith 
2502ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2503ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
250441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2505ffe4fb16SHong Zhang       its--;
2506ffe4fb16SHong Zhang     }
2507ffe4fb16SHong Zhang 
2508ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2509ffe4fb16SHong Zhang     while (its--){
2510ffe4fb16SHong Zhang 
2511ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2512ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2513ffe4fb16SHong Zhang 
2514ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25151ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25161ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2517ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25181ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2519ffe4fb16SHong Zhang 
2520efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2521ffe4fb16SHong Zhang 
2522ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25231ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25241ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2525ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25261ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2527ffe4fb16SHong Zhang 
2528ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2529fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2530ffe4fb16SHong Zhang 
2531ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25321ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25331ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2534ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2535ffe4fb16SHong Zhang 
2536ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2537ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2538ffe4fb16SHong Zhang 
2539ffe4fb16SHong Zhang       /* local diagonal sweep */
254041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2541ffe4fb16SHong Zhang     }
2542ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2543fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
254441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2545fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
254641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2547fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2548fa22f6d0SBarry Smith     Vec               xx1;
2549fa22f6d0SBarry Smith     PetscTruth        hasop;
255020f1ed55SBarry Smith     const PetscScalar *diag;
2551887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
255220f1ed55SBarry Smith     PetscInt          i,n;
2553fa22f6d0SBarry Smith 
2554fa22f6d0SBarry Smith     if (!mat->xx1) {
2555fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2556fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2557fa22f6d0SBarry Smith     }
2558fa22f6d0SBarry Smith     xx1 = mat->xx1;
2559fa22f6d0SBarry Smith     bb1 = mat->bb1;
2560fa22f6d0SBarry Smith 
256141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2562fa22f6d0SBarry Smith 
2563fa22f6d0SBarry Smith     if (!mat->diag) {
2564effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2565fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2566fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2567fa22f6d0SBarry Smith     }
2568fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2569fa22f6d0SBarry Smith 
2570fa22f6d0SBarry Smith     if (hasop) {
2571fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2572887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
257320f1ed55SBarry Smith     } else {
257420f1ed55SBarry Smith       /*
257520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
257620f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2577887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
257820f1ed55SBarry Smith       */
257920f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
258020f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
258120f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
258220f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
258320f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2584887ee2caSBarry Smith       if (omega == 1.0) {
258520f1ed55SBarry Smith 	for (i=0; i<n; i++) {
258620f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
258720f1ed55SBarry Smith 	}
258820f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2589887ee2caSBarry Smith       } else {
2590887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2591887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2592887ee2caSBarry Smith 	}
2593887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2594887ee2caSBarry Smith       }
259520f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
259620f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
259720f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
259820f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
259920f1ed55SBarry Smith     }
2600fa22f6d0SBarry Smith 
2601fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2602fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2603fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2604fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2605fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2606fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2607fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2608fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2609fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2610fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2611effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2612fa22f6d0SBarry Smith 
2613fa22f6d0SBarry Smith     /* local sweep */
261441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2615fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2616ffe4fb16SHong Zhang   } else {
2617e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2618ffe4fb16SHong Zhang   }
2619ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2620ffe4fb16SHong Zhang }
2621ffe4fb16SHong Zhang 
2622ffe4fb16SHong Zhang #undef __FUNCT__
262341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
262441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2625ffe4fb16SHong Zhang {
2626ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2627dfbe8321SBarry Smith   PetscErrorCode ierr;
26282798e883SHong Zhang   Vec            lvec1,bb1;
26292798e883SHong Zhang 
26302798e883SHong Zhang   PetscFunctionBegin;
2631e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2632e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26332798e883SHong Zhang 
2634c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26352798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
263641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26372798e883SHong Zhang       its--;
26382798e883SHong Zhang     }
26392798e883SHong Zhang 
26402798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26412798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26422798e883SHong Zhang     while (its--){
2643ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26442798e883SHong Zhang 
26452798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26462798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2647efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26482798e883SHong Zhang 
2649ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26502798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2651ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26522798e883SHong Zhang 
26532798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2654efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26552798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26562798e883SHong Zhang 
2657ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26582798e883SHong Zhang 
2659c14dc6b6SHong Zhang       /* diagonal sweep */
266041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26612798e883SHong Zhang     }
26622798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26632798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2664c14dc6b6SHong Zhang   } else {
2665e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2666c14dc6b6SHong Zhang   }
26672798e883SHong Zhang   PetscFunctionReturn(0);
26682798e883SHong Zhang }
26692798e883SHong Zhang 
2670