1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6f3da1532SBarry Smith #include "petscblaslapack.h" 7a30f8f8cSSatish Balay 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay EXTERN_C_BEGIN 254a2ae208SSatish Balay #undef __FUNCT__ 264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 28a30f8f8cSSatish Balay { 29f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 30dfbe8321SBarry Smith PetscErrorCode ierr; 31a30f8f8cSSatish Balay 32a30f8f8cSSatish Balay PetscFunctionBegin; 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 35a30f8f8cSSatish Balay PetscFunctionReturn(0); 36a30f8f8cSSatish Balay } 37a30f8f8cSSatish Balay EXTERN_C_END 38a30f8f8cSSatish Balay 39a30f8f8cSSatish Balay EXTERN_C_BEGIN 404a2ae208SSatish Balay #undef __FUNCT__ 414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 43a30f8f8cSSatish Balay { 44f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 45dfbe8321SBarry Smith PetscErrorCode ierr; 46a30f8f8cSSatish Balay 47a30f8f8cSSatish Balay PetscFunctionBegin; 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 49a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 50a30f8f8cSSatish Balay PetscFunctionReturn(0); 51a30f8f8cSSatish Balay } 52a30f8f8cSSatish Balay EXTERN_C_END 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay 55a30f8f8cSSatish Balay #define CHUNKSIZE 10 56a30f8f8cSSatish Balay 57a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 58a30f8f8cSSatish Balay { \ 59a30f8f8cSSatish Balay \ 60a30f8f8cSSatish Balay brow = row/bs; \ 61a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 62a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 63a30f8f8cSSatish Balay bcol = col/bs; \ 64a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 65a30f8f8cSSatish Balay low = 0; high = nrow; \ 66a30f8f8cSSatish Balay while (high-low > 3) { \ 67a30f8f8cSSatish Balay t = (low+high)/2; \ 68a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 69a30f8f8cSSatish Balay else low = t; \ 70a30f8f8cSSatish Balay } \ 71a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 72a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 73a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 74a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 75a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 76a30f8f8cSSatish Balay else *bap = value; \ 77a30f8f8cSSatish Balay goto a_noinsert; \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay } \ 80a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 81e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 82421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 83a30f8f8cSSatish Balay N = nrow++ - 1; \ 84a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 85a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 86a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 87a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 90a30f8f8cSSatish Balay rp[_i] = bcol; \ 91a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 92a30f8f8cSSatish Balay a_noinsert:; \ 93a30f8f8cSSatish Balay ailen[brow] = nrow; \ 94a30f8f8cSSatish Balay } 95e5e170daSBarry Smith 96a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 97a30f8f8cSSatish Balay { \ 98a30f8f8cSSatish Balay brow = row/bs; \ 99a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 100a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 101a30f8f8cSSatish Balay bcol = col/bs; \ 102a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 103a30f8f8cSSatish Balay low = 0; high = nrow; \ 104a30f8f8cSSatish Balay while (high-low > 3) { \ 105a30f8f8cSSatish Balay t = (low+high)/2; \ 106a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 107a30f8f8cSSatish Balay else low = t; \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 110a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 111a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 112a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 113a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 114a30f8f8cSSatish Balay else *bap = value; \ 115a30f8f8cSSatish Balay goto b_noinsert; \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay } \ 118a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 119e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 120421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 121a30f8f8cSSatish Balay N = nrow++ - 1; \ 122a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 123a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 124a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 125a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 126a30f8f8cSSatish Balay } \ 127a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 128a30f8f8cSSatish Balay rp[_i] = bcol; \ 129a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 130a30f8f8cSSatish Balay b_noinsert:; \ 131a30f8f8cSSatish Balay bilen[brow] = nrow; \ 132a30f8f8cSSatish Balay } 133a30f8f8cSSatish Balay 134a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 135a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 136a30f8f8cSSatish Balay */ 1374a2ae208SSatish Balay #undef __FUNCT__ 138dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 139dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 140a30f8f8cSSatish Balay { 141a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 142a30f8f8cSSatish Balay MatScalar value; 143b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 144dfbe8321SBarry Smith PetscErrorCode ierr; 1451302d50aSBarry Smith PetscInt i,j,row,col; 146d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 147d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 148d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay /* Some Variables required in the macro */ 151a30f8f8cSSatish Balay Mat A = baij->A; 152a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1531302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 154a30f8f8cSSatish Balay MatScalar *aa=a->a; 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay Mat B = baij->B; 157a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1581302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 159a30f8f8cSSatish Balay MatScalar *ba=b->a; 160a30f8f8cSSatish Balay 1611302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1621302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 163a30f8f8cSSatish Balay MatScalar *ap,*bap; 164a30f8f8cSSatish Balay 165a30f8f8cSSatish Balay /* for stash */ 166910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 167910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 168a30f8f8cSSatish Balay 169a30f8f8cSSatish Balay PetscFunctionBegin; 17071fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 171a30f8f8cSSatish Balay if (!baij->donotstash){ 17259ffdab8SBarry Smith if (n > baij->n_loc) { 17359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17759ffdab8SBarry Smith baij->n_loc = n; 17859ffdab8SBarry Smith } 17959ffdab8SBarry Smith in_loc = baij->in_loc; 18059ffdab8SBarry Smith v_loc = baij->v_loc; 181a30f8f8cSSatish Balay } 182a30f8f8cSSatish Balay 183a30f8f8cSSatish Balay for (i=0; i<m; i++) { 184a30f8f8cSSatish Balay if (im[i] < 0) continue; 1852515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 186e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 187a30f8f8cSSatish Balay #endif 188a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 189a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 190a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19201b2bd88SHong Zhang if (a->ignore_ltriangular){ 19301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19401b2bd88SHong Zhang } else { 195e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19601b2bd88SHong Zhang } 19701b2bd88SHong Zhang } 198a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 199a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 200a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 201a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 202a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 203a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 204a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 205a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2062515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 207e32f2f54SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);} 208a30f8f8cSSatish Balay #endif 209a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 210a30f8f8cSSatish Balay if (mat->was_assembled) { 211a30f8f8cSSatish Balay if (!baij->colmap) { 212653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 213a30f8f8cSSatish Balay } 214a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 215a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21671730473SSatish Balay col = col - 1; 217a30f8f8cSSatish Balay #else 21871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 219a30f8f8cSSatish Balay #endif 220a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 221a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 222a30f8f8cSSatish Balay col = in[j]; 223a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 224a30f8f8cSSatish Balay B = baij->B; 225a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 226a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 227a30f8f8cSSatish Balay ba=b->a; 22871730473SSatish Balay } else col += in[j]%bs; 229a30f8f8cSSatish Balay } else col = in[j]; 230a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 231a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 232a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay } else { /* off processor entry */ 236a30f8f8cSSatish Balay if (!baij->donotstash) { 237a30f8f8cSSatish Balay n_loc = 0; 238a30f8f8cSSatish Balay for (j=0; j<n; j++){ 239f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 240a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 241a30f8f8cSSatish Balay if (roworiented) { 242a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 243a30f8f8cSSatish Balay } else { 244a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay n_loc++; 247a30f8f8cSSatish Balay } 248b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay PetscFunctionReturn(0); 253a30f8f8cSSatish Balay } 254a30f8f8cSSatish Balay 2554a2ae208SSatish Balay #undef __FUNCT__ 256dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 257dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 258a30f8f8cSSatish Balay { 2590880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 260f15d580aSBarry Smith const MatScalar *value; 261f15d580aSBarry Smith MatScalar *barray=baij->barray; 262f3f98c53SJed Brown PetscTruth roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 263dfbe8321SBarry Smith PetscErrorCode ierr; 264899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 265899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 266d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2670880e062SHong Zhang 268a30f8f8cSSatish Balay PetscFunctionBegin; 2690880e062SHong Zhang if(!barray) { 2700880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2710880e062SHong Zhang baij->barray = barray; 2720880e062SHong Zhang } 2730880e062SHong Zhang 2740880e062SHong Zhang if (roworiented) { 2750880e062SHong Zhang stepval = (n-1)*bs; 2760880e062SHong Zhang } else { 2770880e062SHong Zhang stepval = (m-1)*bs; 2780880e062SHong Zhang } 2790880e062SHong Zhang for (i=0; i<m; i++) { 2800880e062SHong Zhang if (im[i] < 0) continue; 2812515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 282e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2830880e062SHong Zhang #endif 2840880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2850880e062SHong Zhang row = im[i] - rstart; 2860880e062SHong Zhang for (j=0; j<n; j++) { 287f3f98c53SJed Brown if (im[i] > in[j]) { 288f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 289e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 290f3f98c53SJed Brown } 2910880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2920880e062SHong Zhang if ((roworiented) && (n == 1)) { 293f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2940880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 295f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2960880e062SHong Zhang } else { /* Here a copy is required */ 2970880e062SHong Zhang if (roworiented) { 2980880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2990880e062SHong Zhang } else { 3000880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3010880e062SHong Zhang } 3020880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3030880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3040880e062SHong Zhang *barray++ = *value++; 3050880e062SHong Zhang } 3060880e062SHong Zhang } 3070880e062SHong Zhang barray -=bs2; 3080880e062SHong Zhang } 3090880e062SHong Zhang 3100880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3110880e062SHong Zhang col = in[j] - cstart; 3120880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3130880e062SHong Zhang } 3140880e062SHong Zhang else if (in[j] < 0) continue; 3152515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 316e32f2f54SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3170880e062SHong Zhang #endif 3180880e062SHong Zhang else { 3190880e062SHong Zhang if (mat->was_assembled) { 3200880e062SHong Zhang if (!baij->colmap) { 321653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3220880e062SHong Zhang } 3230880e062SHong Zhang 3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3250880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3261302d50aSBarry Smith { PetscInt data; 3270880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 328e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3290880e062SHong Zhang } 3300880e062SHong Zhang #else 331e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3320880e062SHong Zhang #endif 3330880e062SHong Zhang #endif 3340880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3350880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3360880e062SHong Zhang col = (col - 1)/bs; 3370880e062SHong Zhang #else 3380880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3390880e062SHong Zhang #endif 3400880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3410880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3420880e062SHong Zhang col = in[j]; 3430880e062SHong Zhang } 3440880e062SHong Zhang } 3450880e062SHong Zhang else col = in[j]; 346e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3470880e062SHong Zhang } 3480880e062SHong Zhang } 3490880e062SHong Zhang } else { 3500880e062SHong Zhang if (!baij->donotstash) { 3510880e062SHong Zhang if (roworiented) { 3520880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } else { 3540880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang } 3590880e062SHong Zhang PetscFunctionReturn(0); 360a30f8f8cSSatish Balay } 361a30f8f8cSSatish Balay 3624a2ae208SSatish Balay #undef __FUNCT__ 3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 365a30f8f8cSSatish Balay { 366f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3676849ba73SBarry Smith PetscErrorCode ierr; 368d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 369d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 370a30f8f8cSSatish Balay 371a30f8f8cSSatish Balay PetscFunctionBegin; 372a30f8f8cSSatish Balay for (i=0; i<m; i++) { 373e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 374e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 375a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 376a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 377a30f8f8cSSatish Balay for (j=0; j<n; j++) { 378e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 379e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 380a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 381a30f8f8cSSatish Balay col = idxn[j] - bscstart; 382c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } else { 384a30f8f8cSSatish Balay if (!baij->colmap) { 385653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 386a30f8f8cSSatish Balay } 387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 388a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 389a30f8f8cSSatish Balay data --; 390a30f8f8cSSatish Balay #else 391a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 392a30f8f8cSSatish Balay #endif 393a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 394a30f8f8cSSatish Balay else { 395a30f8f8cSSatish Balay col = data + idxn[j]%bs; 396e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay } else { 401e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay PetscFunctionReturn(0); 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay 4074a2ae208SSatish Balay #undef __FUNCT__ 4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 410a30f8f8cSSatish Balay { 411a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 412dfbe8321SBarry Smith PetscErrorCode ierr; 413a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 414a30f8f8cSSatish Balay 415a30f8f8cSSatish Balay PetscFunctionBegin; 416a30f8f8cSSatish Balay if (baij->size == 1) { 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } else { 419a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 420f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 422a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 423a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 424a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4257adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 426a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 427a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4280b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4290b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4300b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4310b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 432899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 433d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4340b8dc8d2SHong Zhang MatScalar *v; 4350b8dc8d2SHong Zhang 43674ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 437d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4380b8dc8d2SHong Zhang /* Amat */ 4390b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4420b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4440b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4450b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4460b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4490b8dc8d2SHong Zhang /* non-diagonal block */ 4500b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang } 4550b8dc8d2SHong Zhang /* Bmat */ 4560b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4570b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4580b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4590b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4600b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4610b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4620b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4630b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4640b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4650b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4660b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 4700b8dc8d2SHong Zhang } 471d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4720b8dc8d2SHong Zhang *norm = 0.0; 473d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4740b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4750b8dc8d2SHong Zhang } 47674ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay } 481a30f8f8cSSatish Balay PetscFunctionReturn(0); 482a30f8f8cSSatish Balay } 483a30f8f8cSSatish Balay 4844a2ae208SSatish Balay #undef __FUNCT__ 4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 487a30f8f8cSSatish Balay { 488a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 489dfbe8321SBarry Smith PetscErrorCode ierr; 4901302d50aSBarry Smith PetscInt nstash,reallocs; 491a30f8f8cSSatish Balay InsertMode addv; 492a30f8f8cSSatish Balay 493a30f8f8cSSatish Balay PetscFunctionBegin; 494a30f8f8cSSatish Balay if (baij->donotstash) { 495a30f8f8cSSatish Balay PetscFunctionReturn(0); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay 498a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4997adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 500*e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 501a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 502a30f8f8cSSatish Balay 503d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5081e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 509a30f8f8cSSatish Balay PetscFunctionReturn(0); 510a30f8f8cSSatish Balay } 511a30f8f8cSSatish Balay 5124a2ae208SSatish Balay #undef __FUNCT__ 5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 515a30f8f8cSSatish Balay { 516a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 517a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5186849ba73SBarry Smith PetscErrorCode ierr; 51913f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 520e44c0bd4SBarry Smith PetscInt *row,*col; 521e44c0bd4SBarry Smith PetscTruth other_disassembled; 52213f74950SBarry Smith PetscMPIInt n; 523a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 524a30f8f8cSSatish Balay MatScalar *val; 525a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 526a30f8f8cSSatish Balay 52791c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 528a30f8f8cSSatish Balay PetscFunctionBegin; 529a30f8f8cSSatish Balay 530a30f8f8cSSatish Balay if (!baij->donotstash) { 531a30f8f8cSSatish Balay while (1) { 532a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 533a30f8f8cSSatish Balay if (!flg) break; 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay for (i=0; i<n;) { 536a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 537a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 538a30f8f8cSSatish Balay if (j < n) ncols = j-i; 539a30f8f8cSSatish Balay else ncols = n-i; 540a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 541dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 542a30f8f8cSSatish Balay i = j; 543a30f8f8cSSatish Balay } 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 546a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 547a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 548a30f8f8cSSatish Balay restore the original flags */ 549a30f8f8cSSatish Balay r1 = baij->roworiented; 550a30f8f8cSSatish Balay r2 = a->roworiented; 55191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 552a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 553a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 555a30f8f8cSSatish Balay while (1) { 556a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 557a30f8f8cSSatish Balay if (!flg) break; 558a30f8f8cSSatish Balay 559a30f8f8cSSatish Balay for (i=0; i<n;) { 560a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 561a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 562a30f8f8cSSatish Balay if (j < n) ncols = j-i; 563a30f8f8cSSatish Balay else ncols = n-i; 564dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 565a30f8f8cSSatish Balay i = j; 566a30f8f8cSSatish Balay } 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 569a30f8f8cSSatish Balay baij->roworiented = r1; 570a30f8f8cSSatish Balay a->roworiented = r2; 57191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 574a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 576a30f8f8cSSatish Balay 577a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 578a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 579a30f8f8cSSatish Balay /* 580a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 581a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 582a30f8f8cSSatish Balay */ 583a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5847adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 585a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 586c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay 590a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 592a30f8f8cSSatish Balay } 59391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 594a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 595a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 596a30f8f8cSSatish Balay 59774ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 598a30f8f8cSSatish Balay baij->rowvalues = 0; 5995222a1afSHong Zhang 600a30f8f8cSSatish Balay PetscFunctionReturn(0); 601a30f8f8cSSatish Balay } 602a30f8f8cSSatish Balay 603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6044a2ae208SSatish Balay #undef __FUNCT__ 6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 607a30f8f8cSSatish Balay { 608a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 609dfbe8321SBarry Smith PetscErrorCode ierr; 610d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6111302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61232077d6dSBarry Smith PetscTruth iascii,isdraw; 613b0a32e0cSBarry Smith PetscViewer sviewer; 614f3ef73ceSBarry Smith PetscViewerFormat format; 615a30f8f8cSSatish Balay 616a30f8f8cSSatish Balay PetscFunctionBegin; 61732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 618fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 61932077d6dSBarry Smith if (iascii) { 620b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 621456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 622a30f8f8cSSatish Balay MatInfo info; 6237adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 624a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 626d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 627d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 62977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 63177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 632b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63307d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 634a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 635a30f8f8cSSatish Balay PetscFunctionReturn(0); 636fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 638a30f8f8cSSatish Balay PetscFunctionReturn(0); 639c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 640c1490034SHong Zhang PetscFunctionReturn(0); 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay } 643a30f8f8cSSatish Balay 644a30f8f8cSSatish Balay if (isdraw) { 645b0a32e0cSBarry Smith PetscDraw draw; 646a30f8f8cSSatish Balay PetscTruth isnull; 647b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 648b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay if (size == 1) { 6527adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 653a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 654a30f8f8cSSatish Balay } else { 655a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 656a30f8f8cSSatish Balay Mat A; 65765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 659d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 660a30f8f8cSSatish Balay MatScalar *a; 661a30f8f8cSSatish Balay 662f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6637adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 664a30f8f8cSSatish Balay if (!rank) { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } else { 667f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } 669f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 670d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 67152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 672a30f8f8cSSatish Balay 673a30f8f8cSSatish Balay /* copy over the A part */ 67465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 675a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6761302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 679e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 680a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 681a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 682e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 683a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 684dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 685a30f8f8cSSatish Balay col++; a += bs; 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay /* copy over the B part */ 69065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 692a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 693e9f7bc9eSHong Zhang 694e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 695a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 696a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 697a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 698a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 699799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 700a30f8f8cSSatish Balay col++; a += bs; 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 705a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 706a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 707a30f8f8cSSatish Balay /* 708a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 709b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 710a30f8f8cSSatish Balay */ 711b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71265d70643SHong Zhang if (!rank) { 7137adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay } 716b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay PetscFunctionReturn(0); 720a30f8f8cSSatish Balay } 721a30f8f8cSSatish Balay 7224a2ae208SSatish Balay #undef __FUNCT__ 7234a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 724dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 725a30f8f8cSSatish Balay { 726dfbe8321SBarry Smith PetscErrorCode ierr; 72732077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 728a30f8f8cSSatish Balay 729a30f8f8cSSatish Balay PetscFunctionBegin; 73032077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 731fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 732b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 733fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73432077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 735a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 736a30f8f8cSSatish Balay } else { 737e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay PetscFunctionReturn(0); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay 7424a2ae208SSatish Balay #undef __FUNCT__ 7434a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 744dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 748a30f8f8cSSatish Balay 749a30f8f8cSSatish Balay PetscFunctionBegin; 750a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 751d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 752a30f8f8cSSatish Balay #endif 753a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 756a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 757a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7589c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 759a30f8f8cSSatish Balay #else 76005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 761a30f8f8cSSatish Balay #endif 76205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 763a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 764a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76540781036SHong Zhang if (baij->slvec0) { 76640781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76740781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76840781036SHong Zhang } 76940781036SHong Zhang if (baij->slvec1) { 77040781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 77140781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77240781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77340781036SHong Zhang } 77440781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 7755755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77605b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77705b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 778fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 779fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 780fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 78165460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE) 78205b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 783a30f8f8cSSatish Balay #endif 78459ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78559ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 786899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 787a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 788901853e0SKris Buschelman 789dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 793901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 794a30f8f8cSSatish Balay PetscFunctionReturn(0); 795a30f8f8cSSatish Balay } 796a30f8f8cSSatish Balay 7974a2ae208SSatish Balay #undef __FUNCT__ 798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 800547795f9SHong Zhang { 801547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 802547795f9SHong Zhang PetscErrorCode ierr; 803547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 804547795f9SHong Zhang PetscScalar *x,*from; 805547795f9SHong Zhang 806547795f9SHong Zhang PetscFunctionBegin; 807547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 808*e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 809547795f9SHong Zhang 810547795f9SHong Zhang /* diagonal part */ 811547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 812547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 813547795f9SHong Zhang 814547795f9SHong Zhang /* subdiagonal part */ 815547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang /* copy x into the vec slvec0 */ 818547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 819547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 820547795f9SHong Zhang 821547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 823547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 824547795f9SHong Zhang 825547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 827547795f9SHong Zhang /* supperdiagonal part */ 828547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 829547795f9SHong Zhang PetscFunctionReturn(0); 830547795f9SHong Zhang } 831547795f9SHong Zhang 832547795f9SHong Zhang #undef __FUNCT__ 833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 835a9d4b620SHong Zhang { 836a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 837dfbe8321SBarry Smith PetscErrorCode ierr; 838d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 839fa22f6d0SBarry Smith PetscScalar *x,*from; 840a9d4b620SHong Zhang 841a9d4b620SHong Zhang PetscFunctionBegin; 842a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 843*e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 844a9d4b620SHong Zhang 845a9d4b620SHong Zhang /* diagonal part */ 846a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 847fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 848a9d4b620SHong Zhang 849a9d4b620SHong Zhang /* subdiagonal part */ 850a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 851fc165ae2SBarry Smith 852a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8531ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 855a9d4b620SHong Zhang 856fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 857fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8581ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 859fc165ae2SBarry Smith 860fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 861ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 862a9d4b620SHong Zhang /* supperdiagonal part */ 863a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 864a9d4b620SHong Zhang PetscFunctionReturn(0); 865a9d4b620SHong Zhang } 866a9d4b620SHong Zhang 867a9d4b620SHong Zhang #undef __FUNCT__ 86840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 869dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 870a30f8f8cSSatish Balay { 871a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 872dfbe8321SBarry Smith PetscErrorCode ierr; 8731302d50aSBarry Smith PetscInt nt; 874a30f8f8cSSatish Balay 875a30f8f8cSSatish Balay PetscFunctionBegin; 876a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 877*e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 878*e7e72b3dSBarry Smith 879a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 880*e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88165d70643SHong Zhang 882ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 883b941877fSHong Zhang /* do diagonal part */ 884b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 885b941877fSHong Zhang /* do supperdiagonal part */ 886ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 887b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 888b941877fSHong Zhang /* do subdiagonal part */ 889b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 890ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 891ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89265d70643SHong Zhang 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 8964a2ae208SSatish Balay #undef __FUNCT__ 8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 899a30f8f8cSSatish Balay { 900de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 901dfbe8321SBarry Smith PetscErrorCode ierr; 902d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 903a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 904a9d4b620SHong Zhang 905a9d4b620SHong Zhang PetscFunctionBegin; 906a9d4b620SHong Zhang /* 9077adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9087adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 909a9d4b620SHong Zhang */ 910a9d4b620SHong Zhang /* diagonal part */ 911a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9122dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 913a9d4b620SHong Zhang 914a9d4b620SHong Zhang /* subdiagonal part */ 915a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 916a9d4b620SHong Zhang 917a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9181ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9191ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 920a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9211ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 922a9d4b620SHong Zhang 923ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 925ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 926a9d4b620SHong Zhang 927a9d4b620SHong Zhang /* supperdiagonal part */ 928a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 929a9d4b620SHong Zhang 930a9d4b620SHong Zhang PetscFunctionReturn(0); 931a9d4b620SHong Zhang } 932a9d4b620SHong Zhang 933a9d4b620SHong Zhang #undef __FUNCT__ 934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 936a9d4b620SHong Zhang { 937a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 938dfbe8321SBarry Smith PetscErrorCode ierr; 939a30f8f8cSSatish Balay 940a30f8f8cSSatish Balay PetscFunctionBegin; 941ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 942b941877fSHong Zhang /* do diagonal part */ 943b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 944b941877fSHong Zhang /* do supperdiagonal part */ 945ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 946de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 947de8b6608SHong Zhang 948b941877fSHong Zhang /* do subdiagonal part */ 949a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 950ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 951ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 952aa482183SHong Zhang 953a30f8f8cSSatish Balay PetscFunctionReturn(0); 954a30f8f8cSSatish Balay } 955a30f8f8cSSatish Balay 956a30f8f8cSSatish Balay /* 957a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 958a30f8f8cSSatish Balay diagonal block 959a30f8f8cSSatish Balay */ 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 963a30f8f8cSSatish Balay { 964a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 969a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 970a30f8f8cSSatish Balay PetscFunctionReturn(0); 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay 9734a2ae208SSatish Balay #undef __FUNCT__ 9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 976a30f8f8cSSatish Balay { 977a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 978dfbe8321SBarry Smith PetscErrorCode ierr; 979a30f8f8cSSatish Balay 980a30f8f8cSSatish Balay PetscFunctionBegin; 981f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 982f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 983a30f8f8cSSatish Balay PetscFunctionReturn(0); 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay 9864a2ae208SSatish Balay #undef __FUNCT__ 9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 989a30f8f8cSSatish Balay { 990d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 991d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 992d0d4cfc2SHong Zhang PetscErrorCode ierr; 993d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 994d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 995899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 996d0d4cfc2SHong Zhang 997a30f8f8cSSatish Balay PetscFunctionBegin; 998e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 999d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1000d0d4cfc2SHong Zhang 1001d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1002d0d4cfc2SHong Zhang /* 1003d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1004d0d4cfc2SHong Zhang */ 1005d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1006d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1007d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1008d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1009d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1010d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1011d0d4cfc2SHong Zhang } 101274ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1013d0d4cfc2SHong Zhang } 1014d0d4cfc2SHong Zhang 1015*e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1016d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1017d0d4cfc2SHong Zhang 1018d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1019d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1020d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1021d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1022d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1023d0d4cfc2SHong Zhang nztot = nzA + nzB; 1024d0d4cfc2SHong Zhang 1025d0d4cfc2SHong Zhang cmap = mat->garray; 1026d0d4cfc2SHong Zhang if (v || idx) { 1027d0d4cfc2SHong Zhang if (nztot) { 1028d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1029d0d4cfc2SHong Zhang PetscInt imark = -1; 1030d0d4cfc2SHong Zhang if (v) { 1031d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1032d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1033d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1034d0d4cfc2SHong Zhang else break; 1035d0d4cfc2SHong Zhang } 1036d0d4cfc2SHong Zhang imark = i; 1037d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1038d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang if (idx) { 1041d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1042d0d4cfc2SHong Zhang if (imark > -1) { 1043d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1044d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang } else { 1047d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1048d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1049d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1050d0d4cfc2SHong Zhang else break; 1051d0d4cfc2SHong Zhang } 1052d0d4cfc2SHong Zhang imark = i; 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1055d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1056d0d4cfc2SHong Zhang } 1057d0d4cfc2SHong Zhang } else { 1058d0d4cfc2SHong Zhang if (idx) *idx = 0; 1059d0d4cfc2SHong Zhang if (v) *v = 0; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang } 1062d0d4cfc2SHong Zhang *nz = nztot; 1063d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1064d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1065a30f8f8cSSatish Balay PetscFunctionReturn(0); 1066a30f8f8cSSatish Balay } 1067a30f8f8cSSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1071a30f8f8cSSatish Balay { 1072a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1073a30f8f8cSSatish Balay 1074a30f8f8cSSatish Balay PetscFunctionBegin; 1075*e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1076a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1077a30f8f8cSSatish Balay PetscFunctionReturn(0); 1078a30f8f8cSSatish Balay } 1079a30f8f8cSSatish Balay 10804a2ae208SSatish Balay #undef __FUNCT__ 1081d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1082d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1083d0d4cfc2SHong Zhang { 1084d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1085d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1086d0d4cfc2SHong Zhang 1087d0d4cfc2SHong Zhang PetscFunctionBegin; 1088d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1089d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1090d0d4cfc2SHong Zhang } 1091d0d4cfc2SHong Zhang #undef __FUNCT__ 1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1093d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1094d0d4cfc2SHong Zhang { 1095d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1096d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1097d0d4cfc2SHong Zhang 1098d0d4cfc2SHong Zhang PetscFunctionBegin; 1099d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1100d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1101d0d4cfc2SHong Zhang } 1102d0d4cfc2SHong Zhang 1103d0d4cfc2SHong Zhang #undef __FUNCT__ 110499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110699cafbc1SBarry Smith { 110799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110899cafbc1SBarry Smith PetscErrorCode ierr; 110999cafbc1SBarry Smith 111099cafbc1SBarry Smith PetscFunctionBegin; 111199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111399cafbc1SBarry Smith PetscFunctionReturn(0); 111499cafbc1SBarry Smith } 111599cafbc1SBarry Smith 111699cafbc1SBarry Smith #undef __FUNCT__ 111799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111999cafbc1SBarry Smith { 112099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112199cafbc1SBarry Smith PetscErrorCode ierr; 112299cafbc1SBarry Smith 112399cafbc1SBarry Smith PetscFunctionBegin; 112499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112699cafbc1SBarry Smith PetscFunctionReturn(0); 112799cafbc1SBarry Smith } 112899cafbc1SBarry Smith 112999cafbc1SBarry Smith #undef __FUNCT__ 11304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1131dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1132a30f8f8cSSatish Balay { 1133a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1134dfbe8321SBarry Smith PetscErrorCode ierr; 1135a30f8f8cSSatish Balay 1136a30f8f8cSSatish Balay PetscFunctionBegin; 1137a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay PetscFunctionReturn(0); 1140a30f8f8cSSatish Balay } 1141a30f8f8cSSatish Balay 11424a2ae208SSatish Balay #undef __FUNCT__ 11434a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1144dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1145a30f8f8cSSatish Balay { 1146a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1147a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1148dfbe8321SBarry Smith PetscErrorCode ierr; 1149a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1150a30f8f8cSSatish Balay 1151a30f8f8cSSatish Balay PetscFunctionBegin; 1152d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1153a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1154a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1155a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1156a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1157a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1158a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1159a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1160a30f8f8cSSatish Balay info->nz_used = isend[0]; 1161a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1162a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1163a30f8f8cSSatish Balay info->memory = isend[3]; 1164a30f8f8cSSatish Balay info->mallocs = isend[4]; 1165a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11667adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1168a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1169a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1170a30f8f8cSSatish Balay info->memory = irecv[3]; 1171a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1172a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11737adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1175a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1176a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1177a30f8f8cSSatish Balay info->memory = irecv[3]; 1178a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1179a30f8f8cSSatish Balay } else { 1180e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1183a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1184a30f8f8cSSatish Balay info->factor_mallocs = 0; 1185a30f8f8cSSatish Balay PetscFunctionReturn(0); 1186a30f8f8cSSatish Balay } 1187a30f8f8cSSatish Balay 11884a2ae208SSatish Balay #undef __FUNCT__ 11894a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 11904e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1191a30f8f8cSSatish Balay { 1192a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1193d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1194dfbe8321SBarry Smith PetscErrorCode ierr; 1195a30f8f8cSSatish Balay 1196a30f8f8cSSatish Balay PetscFunctionBegin; 1197e98b92d7SKris Buschelman switch (op) { 1198512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1199e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1201a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1202e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12034e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12044e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1205e98b92d7SKris Buschelman break; 1206e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12074e0d8c25SBarry Smith a->roworiented = flg; 12084e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12094e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1210e98b92d7SKris Buschelman break; 12114e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1212290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1213e98b92d7SKris Buschelman break; 1214e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12154e0d8c25SBarry Smith a->donotstash = flg; 1216e98b92d7SKris Buschelman break; 1217e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12184e0d8c25SBarry Smith a->ht_flag = flg; 1219e98b92d7SKris Buschelman break; 12209a4540c5SBarry Smith case MAT_HERMITIAN: 1221e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1222eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1223547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1224eeffb40dSHong Zhang break; 122577e54ba9SKris Buschelman case MAT_SYMMETRIC: 1226eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1227eeffb40dSHong Zhang break; 122877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1229eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1230eeffb40dSHong Zhang break; 12319a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1232e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1233290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 123477e54ba9SKris Buschelman break; 1235d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12364e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1237d0d4cfc2SHong Zhang break; 1238d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12394e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1240d0d4cfc2SHong Zhang break; 1241d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12424e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1243d0d4cfc2SHong Zhang break; 1244e98b92d7SKris Buschelman default: 1245e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1246a30f8f8cSSatish Balay } 1247a30f8f8cSSatish Balay PetscFunctionReturn(0); 1248a30f8f8cSSatish Balay } 1249a30f8f8cSSatish Balay 12504a2ae208SSatish Balay #undef __FUNCT__ 12518115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1252fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1253a30f8f8cSSatish Balay { 1254dfbe8321SBarry Smith PetscErrorCode ierr; 1255a30f8f8cSSatish Balay PetscFunctionBegin; 1256815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1257999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1258fc4dec0aSBarry Smith } 12598115998fSBarry Smith PetscFunctionReturn(0); 1260a30f8f8cSSatish Balay } 1261a30f8f8cSSatish Balay 12624a2ae208SSatish Balay #undef __FUNCT__ 12634a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1264dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1265a30f8f8cSSatish Balay { 1266a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1267a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1268dfbe8321SBarry Smith PetscErrorCode ierr; 12695e90f9d9SHong Zhang PetscInt nv,m,n; 1270b3bf805bSHong Zhang PetscTruth flg; 1271a30f8f8cSSatish Balay 1272a30f8f8cSSatish Balay PetscFunctionBegin; 1273a30f8f8cSSatish Balay if (ll != rr){ 1274b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1275*e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1276a30f8f8cSSatish Balay } 1277b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1278b3bf805bSHong Zhang 12795e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1280e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1281b3bf805bSHong Zhang 12825e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1283e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12845e90f9d9SHong Zhang 1285ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12865e90f9d9SHong Zhang 12875e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1288a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12895e90f9d9SHong Zhang 12905e90f9d9SHong Zhang /* scale the diagonal part */ 1291a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1292a30f8f8cSSatish Balay 12935e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1294ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1295a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1296a30f8f8cSSatish Balay PetscFunctionReturn(0); 1297a30f8f8cSSatish Balay } 1298a30f8f8cSSatish Balay 12994a2ae208SSatish Balay #undef __FUNCT__ 13004a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1301dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1302a30f8f8cSSatish Balay { 1303f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1304dfbe8321SBarry Smith PetscErrorCode ierr; 1305a30f8f8cSSatish Balay 1306a30f8f8cSSatish Balay PetscFunctionBegin; 1307a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1308a30f8f8cSSatish Balay PetscFunctionReturn(0); 1309a30f8f8cSSatish Balay } 1310a30f8f8cSSatish Balay 13116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1312a30f8f8cSSatish Balay 13134a2ae208SSatish Balay #undef __FUNCT__ 13144a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1315dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1316a30f8f8cSSatish Balay { 1317a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1318a30f8f8cSSatish Balay Mat a,b,c,d; 1319a30f8f8cSSatish Balay PetscTruth flg; 1320dfbe8321SBarry Smith PetscErrorCode ierr; 1321a30f8f8cSSatish Balay 1322a30f8f8cSSatish Balay PetscFunctionBegin; 1323a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1324a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1325a30f8f8cSSatish Balay 1326a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1327abc0a331SBarry Smith if (flg) { 1328a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1329a30f8f8cSSatish Balay } 13307adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1331a30f8f8cSSatish Balay PetscFunctionReturn(0); 1332a30f8f8cSSatish Balay } 1333a30f8f8cSSatish Balay 13344a2ae208SSatish Balay #undef __FUNCT__ 13353c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13363c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13373c896bc6SHong Zhang { 13383c896bc6SHong Zhang PetscErrorCode ierr; 13393c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13403c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13413c896bc6SHong Zhang 13423c896bc6SHong Zhang PetscFunctionBegin; 13433c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13443c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1345d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13463c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1347d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13483c896bc6SHong Zhang } else { 13493c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13503c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13513c896bc6SHong Zhang } 13523c896bc6SHong Zhang PetscFunctionReturn(0); 13533c896bc6SHong Zhang } 13543c896bc6SHong Zhang 13553c896bc6SHong Zhang #undef __FUNCT__ 13564a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1357dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1358273d9f13SBarry Smith { 1359dfbe8321SBarry Smith PetscErrorCode ierr; 1360273d9f13SBarry Smith 1361273d9f13SBarry Smith PetscFunctionBegin; 1362db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1363273d9f13SBarry Smith PetscFunctionReturn(0); 1364273d9f13SBarry Smith } 1365a5e6ed63SBarry Smith 13664fe895cdSHong Zhang #undef __FUNCT__ 13674fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13684fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13694fe895cdSHong Zhang { 13704fe895cdSHong Zhang PetscErrorCode ierr; 13714fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13724fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13734fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13744fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13754fe895cdSHong Zhang 13764fe895cdSHong Zhang PetscFunctionBegin; 13774fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13784fe895cdSHong Zhang PetscScalar alpha = a; 13794fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13804fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13810805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13824fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13834fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13844fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13850805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13864fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13874fe895cdSHong Zhang } else { 1388d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13894fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1390d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 13914fe895cdSHong Zhang } 13924fe895cdSHong Zhang PetscFunctionReturn(0); 13934fe895cdSHong Zhang } 13944fe895cdSHong Zhang 1395a5e6ed63SBarry Smith #undef __FUNCT__ 13966363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 13976363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 13986363de48SJed Brown { 13996363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14006363de48SJed Brown PetscInt rbs,cbs; 14016363de48SJed Brown PetscErrorCode ierr; 14026363de48SJed Brown 14036363de48SJed Brown PetscFunctionBegin; 14046363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14056363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14066363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14076363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1408e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 1409e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14106363de48SJed Brown PetscFunctionReturn(0); 14116363de48SJed Brown } 14126363de48SJed Brown 14136363de48SJed Brown #undef __FUNCT__ 1414a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14151302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1416a5e6ed63SBarry Smith { 14176849ba73SBarry Smith PetscErrorCode ierr; 14181302d50aSBarry Smith PetscInt i; 1419a5e6ed63SBarry Smith PetscTruth flg; 1420a5e6ed63SBarry Smith 14216849ba73SBarry Smith PetscFunctionBegin; 1422a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1423a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1424*e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1425a5e6ed63SBarry Smith } 1426a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1427a5e6ed63SBarry Smith PetscFunctionReturn(0); 1428a5e6ed63SBarry Smith } 1429a5e6ed63SBarry Smith 1430a5e6ed63SBarry Smith 1431a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1432a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1433a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1434a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1435a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1436a9d4b620SHong Zhang MatMult_MPISBAIJ, 143797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1438431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1439431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1440a30f8f8cSSatish Balay 0, 1441a30f8f8cSSatish Balay 0, 1442a30f8f8cSSatish Balay 0, 144397304618SKris Buschelman /*10*/ 0, 1444a30f8f8cSSatish Balay 0, 1445a30f8f8cSSatish Balay 0, 144641f059aeSBarry Smith MatSOR_MPISBAIJ, 1447a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 144897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1449a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1450a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1451a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1452a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 145397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1454a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1455a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1456a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1457d519adbfSMatthew Knepley /*24*/ 0, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1463b5df2d14SHong Zhang 0, 1464a30f8f8cSSatish Balay 0, 1465a30f8f8cSSatish Balay 0, 1466a30f8f8cSSatish Balay 0, 1467d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1468a30f8f8cSSatish Balay 0, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1473a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1474d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1475a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14763c896bc6SHong Zhang MatCopy_MPISBAIJ, 1477d519adbfSMatthew Knepley /*44*/ 0, 1478a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 14826363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487d519adbfSMatthew Knepley /*54*/ 0, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1492d519adbfSMatthew Knepley /*59*/ 0, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495357abbc8SBarry Smith 0, 149624d5174aSHong Zhang 0, 1497d519adbfSMatthew Knepley /*64*/ 0, 149824d5174aSHong Zhang 0, 149924d5174aSHong Zhang 0, 150024d5174aSHong Zhang 0, 150124d5174aSHong Zhang 0, 1502d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 150324d5174aSHong Zhang 0, 150497304618SKris Buschelman 0, 150597304618SKris Buschelman 0, 150697304618SKris Buschelman 0, 1507d519adbfSMatthew Knepley /*74*/ 0, 150897304618SKris Buschelman 0, 150997304618SKris Buschelman 0, 151097304618SKris Buschelman 0, 151197304618SKris Buschelman 0, 1512d519adbfSMatthew Knepley /*79*/ 0, 151397304618SKris Buschelman 0, 151497304618SKris Buschelman 0, 151597304618SKris Buschelman 0, 1516865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1517d519adbfSMatthew Knepley /*84*/ 0, 1518865e5f61SKris Buschelman 0, 1519865e5f61SKris Buschelman 0, 1520865e5f61SKris Buschelman 0, 1521865e5f61SKris Buschelman 0, 1522d519adbfSMatthew Knepley /*89*/ 0, 1523865e5f61SKris Buschelman 0, 1524865e5f61SKris Buschelman 0, 1525865e5f61SKris Buschelman 0, 1526865e5f61SKris Buschelman 0, 1527d519adbfSMatthew Knepley /*94*/ 0, 1528865e5f61SKris Buschelman 0, 1529865e5f61SKris Buschelman 0, 153099cafbc1SBarry Smith 0, 153199cafbc1SBarry Smith 0, 1532d519adbfSMatthew Knepley /*99*/ 0, 153399cafbc1SBarry Smith 0, 153499cafbc1SBarry Smith 0, 153599cafbc1SBarry Smith 0, 153699cafbc1SBarry Smith 0, 1537d519adbfSMatthew Knepley /*104*/0, 153899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1539d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1540d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1541d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 154299cafbc1SBarry Smith }; 1543a30f8f8cSSatish Balay 1544a30f8f8cSSatish Balay 1545a30f8f8cSSatish Balay EXTERN_C_BEGIN 15464a2ae208SSatish Balay #undef __FUNCT__ 15474a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1548be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1549a30f8f8cSSatish Balay { 1550a30f8f8cSSatish Balay PetscFunctionBegin; 1551a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1552a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1553a30f8f8cSSatish Balay PetscFunctionReturn(0); 1554a30f8f8cSSatish Balay } 1555a30f8f8cSSatish Balay EXTERN_C_END 1556a30f8f8cSSatish Balay 1557273d9f13SBarry Smith EXTERN_C_BEGIN 15584a2ae208SSatish Balay #undef __FUNCT__ 1559a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1560be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1561a23d5eceSKris Buschelman { 1562a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1563dfbe8321SBarry Smith PetscErrorCode ierr; 1564db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1565a23d5eceSKris Buschelman 1566a23d5eceSKris Buschelman PetscFunctionBegin; 1567db4efbfdSBarry Smith if (bs < 0){ 15687adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1569db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15708c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1571db4efbfdSBarry Smith bs = PetscAbs(bs); 1572db4efbfdSBarry Smith } 1573*e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1574db4efbfdSBarry Smith bs = newbs; 1575a23d5eceSKris Buschelman 1576a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1577a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1578e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1579e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1580899cda47SBarry Smith 1581d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 158226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 158326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1584899cda47SBarry Smith 1585a23d5eceSKris Buschelman if (d_nnz) { 1586d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1587e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1588a23d5eceSKris Buschelman } 1589a23d5eceSKris Buschelman } 1590a23d5eceSKris Buschelman if (o_nnz) { 1591d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1592e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1593a23d5eceSKris Buschelman } 1594a23d5eceSKris Buschelman } 1595a23d5eceSKris Buschelman 1596a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1597d0f46423SBarry Smith mbs = B->rmap->n/bs; 1598d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1599d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1600e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1601a23d5eceSKris Buschelman } 1602a23d5eceSKris Buschelman 1603d0f46423SBarry Smith B->rmap->bs = bs; 1604a23d5eceSKris Buschelman b->bs2 = bs*bs; 1605a23d5eceSKris Buschelman b->mbs = mbs; 1606a23d5eceSKris Buschelman b->nbs = mbs; 1607a23d5eceSKris Buschelman b->Mbs = Mbs; 1608a23d5eceSKris Buschelman b->Nbs = Mbs; 1609a23d5eceSKris Buschelman 1610a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1611d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1612a23d5eceSKris Buschelman } 1613d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1614d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1615a23d5eceSKris Buschelman 1616d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1617d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1618a23d5eceSKris Buschelman 1619526dfc15SBarry Smith if (!B->preallocated) { 1620f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1621d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16229c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 162352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1624f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1625d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16264aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 162752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 162815bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1629526dfc15SBarry Smith } 1630a23d5eceSKris Buschelman 1631526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1632526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1633526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1634a23d5eceSKris Buschelman PetscFunctionReturn(0); 1635a23d5eceSKris Buschelman } 1636a23d5eceSKris Buschelman EXTERN_C_END 1637a23d5eceSKris Buschelman 16385c9eb25fSBarry Smith EXTERN_C_BEGIN 1639611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1640611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*); 1641611f576cSBarry Smith #endif 1642611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16435c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1644611f576cSBarry Smith #endif 1645b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1646b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1647b5e56a35SBarry Smith #endif 16485c9eb25fSBarry Smith EXTERN_C_END 16495c9eb25fSBarry Smith 16500bad9183SKris Buschelman /*MC 1651fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16520bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16530bad9183SKris Buschelman 16540bad9183SKris Buschelman Options Database Keys: 16550bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16560bad9183SKris Buschelman 16570bad9183SKris Buschelman Level: beginner 16580bad9183SKris Buschelman 16590bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16600bad9183SKris Buschelman M*/ 16610bad9183SKris Buschelman 1662a23d5eceSKris Buschelman EXTERN_C_BEGIN 1663a23d5eceSKris Buschelman #undef __FUNCT__ 16644a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1665be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1666b5df2d14SHong Zhang { 1667b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1668dfbe8321SBarry Smith PetscErrorCode ierr; 1669b5df2d14SHong Zhang PetscTruth flg; 1670b5df2d14SHong Zhang 1671b5df2d14SHong Zhang PetscFunctionBegin; 1672b5df2d14SHong Zhang 167338f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1674b0a32e0cSBarry Smith B->data = (void*)b; 1675b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1676b5df2d14SHong Zhang 1677b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1678b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1679b5df2d14SHong Zhang B->mapping = 0; 1680b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1681b5df2d14SHong Zhang 1682b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16837adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16847adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1685b5df2d14SHong Zhang 1686b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1687899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1688b5df2d14SHong Zhang 1689b5df2d14SHong Zhang /* build cache for off array entries formed */ 16907adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1691b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1692b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1693b5df2d14SHong Zhang b->garray = PETSC_NULL; 1694b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1695b5df2d14SHong Zhang 1696b5df2d14SHong Zhang /* stuff used in block assembly */ 1697b5df2d14SHong Zhang b->barray = 0; 1698b5df2d14SHong Zhang 1699b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1700b5df2d14SHong Zhang b->lvec = 0; 1701b5df2d14SHong Zhang b->Mvctx = 0; 170240781036SHong Zhang b->slvec0 = 0; 170340781036SHong Zhang b->slvec0b = 0; 170440781036SHong Zhang b->slvec1 = 0; 170540781036SHong Zhang b->slvec1a = 0; 170640781036SHong Zhang b->slvec1b = 0; 170740781036SHong Zhang b->sMvctx = 0; 1708b5df2d14SHong Zhang 1709b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1710b5df2d14SHong Zhang b->rowindices = 0; 1711b5df2d14SHong Zhang b->rowvalues = 0; 1712b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1713b5df2d14SHong Zhang 1714b5df2d14SHong Zhang /* hash table stuff */ 1715b5df2d14SHong Zhang b->ht = 0; 1716b5df2d14SHong Zhang b->hd = 0; 1717b5df2d14SHong Zhang b->ht_size = 0; 1718b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1719b5df2d14SHong Zhang b->ht_fact = 0; 1720b5df2d14SHong Zhang b->ht_total_ct = 0; 1721b5df2d14SHong Zhang b->ht_insert_ct = 0; 1722b5df2d14SHong Zhang 172359ffdab8SBarry Smith b->in_loc = 0; 172459ffdab8SBarry Smith b->v_loc = 0; 172559ffdab8SBarry Smith b->n_loc = 0; 17267adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17278c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1728b5df2d14SHong Zhang if (flg) { 1729f6275e2eSBarry Smith PetscReal fact = 1.39; 17304e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17318c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1732b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1733b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17341e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1735b5df2d14SHong Zhang } 17368c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17378c07d4e3SBarry Smith 1738b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1739ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1740b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1741b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1742b5e56a35SBarry Smith #endif 1743611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1744ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 17455c9eb25fSBarry Smith "MatGetFactor_mpisbaij_mumps", 17465c9eb25fSBarry Smith MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr); 1747611f576cSBarry Smith #endif 1748611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1749ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 17505c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17515c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1752611f576cSBarry Smith #endif 1753b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1754b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1755b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1756b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1757b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1758b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1759b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1760b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1761b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1762a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1763a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1764a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 176523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 176623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 176723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 176823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 176917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1770b5df2d14SHong Zhang PetscFunctionReturn(0); 1771b5df2d14SHong Zhang } 1772273d9f13SBarry Smith EXTERN_C_END 1773b5df2d14SHong Zhang 1774209238afSKris Buschelman /*MC 1775002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1776209238afSKris Buschelman 1777209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1778209238afSKris Buschelman and MATMPISBAIJ otherwise. 1779209238afSKris Buschelman 1780209238afSKris Buschelman Options Database Keys: 1781209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1782209238afSKris Buschelman 1783209238afSKris Buschelman Level: beginner 1784209238afSKris Buschelman 1785209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1786209238afSKris Buschelman M*/ 1787209238afSKris Buschelman 1788209238afSKris Buschelman EXTERN_C_BEGIN 1789209238afSKris Buschelman #undef __FUNCT__ 1790209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1791be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1792dfbe8321SBarry Smith { 17936849ba73SBarry Smith PetscErrorCode ierr; 17941302d50aSBarry Smith PetscMPIInt size; 1795209238afSKris Buschelman 1796209238afSKris Buschelman PetscFunctionBegin; 17977adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1798209238afSKris Buschelman if (size == 1) { 1799209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1800209238afSKris Buschelman } else { 1801209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1802209238afSKris Buschelman } 1803209238afSKris Buschelman PetscFunctionReturn(0); 1804209238afSKris Buschelman } 1805209238afSKris Buschelman EXTERN_C_END 1806209238afSKris Buschelman 18074a2ae208SSatish Balay #undef __FUNCT__ 18084a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1809b5df2d14SHong Zhang /*@C 1810b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1811b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1812b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1813b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1814b5df2d14SHong Zhang 1815b5df2d14SHong Zhang Collective on Mat 1816b5df2d14SHong Zhang 1817b5df2d14SHong Zhang Input Parameters: 1818b5df2d14SHong Zhang + A - the matrix 1819b5df2d14SHong Zhang . bs - size of blockk 1820b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1821b5df2d14SHong Zhang submatrix (same for all local rows) 1822b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18236d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18246d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18256d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1826b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1827b5df2d14SHong Zhang submatrix (same for all local rows). 1828b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1829b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1830b5df2d14SHong Zhang each block row) or PETSC_NULL. 1831b5df2d14SHong Zhang 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang Options Database Keys: 1834b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1835b5df2d14SHong Zhang block calculations (much slower) 1836b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1837b5df2d14SHong Zhang 1838b5df2d14SHong Zhang Notes: 1839b5df2d14SHong Zhang 1840b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1841b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1842b5df2d14SHong Zhang 184349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 184449a6f317SBarry Smith 1845b5df2d14SHong Zhang Storage Information: 1846b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1847b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1848b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1849b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1850b5df2d14SHong Zhang 1851b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1852b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1853b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1854b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1855b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1856b5df2d14SHong Zhang 1857aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1858aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1859aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1860aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1861aa95bbe8SBarry Smith 1862b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1863b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang .vb 1866b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1867b5df2d14SHong Zhang ------------------- 1868b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1869b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1870b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1871b5df2d14SHong Zhang ------------------- 1872b5df2d14SHong Zhang .ve 1873b5df2d14SHong Zhang 1874b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1875b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18766d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18776d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1878b5df2d14SHong Zhang 18796d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18806d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1881b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1882b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1883b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1884b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1885b5df2d14SHong Zhang matrices. 1886b5df2d14SHong Zhang 1887b5df2d14SHong Zhang Level: intermediate 1888b5df2d14SHong Zhang 1889b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1890b5df2d14SHong Zhang 1891b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1892b5df2d14SHong Zhang @*/ 1893be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1894b5df2d14SHong Zhang { 18951302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1896b5df2d14SHong Zhang 1897b5df2d14SHong Zhang PetscFunctionBegin; 1898a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1899a23d5eceSKris Buschelman if (f) { 1900a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1901b5df2d14SHong Zhang } 1902b5df2d14SHong Zhang PetscFunctionReturn(0); 1903b5df2d14SHong Zhang } 1904b5df2d14SHong Zhang 19054a2ae208SSatish Balay #undef __FUNCT__ 19064a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1907a30f8f8cSSatish Balay /*@C 1908a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1909a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1910a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1911a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1912a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1913a30f8f8cSSatish Balay 1914a30f8f8cSSatish Balay Collective on MPI_Comm 1915a30f8f8cSSatish Balay 1916a30f8f8cSSatish Balay Input Parameters: 1917a30f8f8cSSatish Balay + comm - MPI communicator 1918a30f8f8cSSatish Balay . bs - size of blockk 1919a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1920a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1921a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1922a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1923a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1924a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1925a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1926a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1927a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1928a30f8f8cSSatish Balay submatrix (same for all local rows) 1929a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19306d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19316d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19326d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1933a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1934a30f8f8cSSatish Balay submatrix (same for all local rows). 1935a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1936a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1937a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1938a30f8f8cSSatish Balay 1939a30f8f8cSSatish Balay Output Parameter: 1940a30f8f8cSSatish Balay . A - the matrix 1941a30f8f8cSSatish Balay 1942a30f8f8cSSatish Balay Options Database Keys: 1943a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1944a30f8f8cSSatish Balay block calculations (much slower) 1945a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1946a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1947a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1948a30f8f8cSSatish Balay 1949175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1950ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1951175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1952175b88e8SBarry Smith 1953a30f8f8cSSatish Balay Notes: 1954d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19556d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1956d1be2dadSMatthew Knepley 1957a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1958a30f8f8cSSatish Balay (possibly both). 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1961a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1962a30f8f8cSSatish Balay 196349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 196449a6f317SBarry Smith 1965a30f8f8cSSatish Balay Storage Information: 1966a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1967a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1968a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1969a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1972a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1973a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1974a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1975a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1978a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1979a30f8f8cSSatish Balay 1980a30f8f8cSSatish Balay .vb 1981a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1982a30f8f8cSSatish Balay ------------------- 1983a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1984a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1985a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1986a30f8f8cSSatish Balay ------------------- 1987a30f8f8cSSatish Balay .ve 1988a30f8f8cSSatish Balay 1989a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1990a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19916d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19926d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1993a30f8f8cSSatish Balay 19946d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19956d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1996a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1997a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1998a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1999a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2000a30f8f8cSSatish Balay matrices. 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay Level: intermediate 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2005a30f8f8cSSatish Balay 2006a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2007a30f8f8cSSatish Balay @*/ 2008a30f8f8cSSatish Balay 2009be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2010a30f8f8cSSatish Balay { 20116849ba73SBarry Smith PetscErrorCode ierr; 20121302d50aSBarry Smith PetscMPIInt size; 2013a30f8f8cSSatish Balay 2014a30f8f8cSSatish Balay PetscFunctionBegin; 2015f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2016f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2017273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2018273d9f13SBarry Smith if (size > 1) { 2019b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2020b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2021273d9f13SBarry Smith } else { 2022273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2023273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2024273d9f13SBarry Smith } 2025a30f8f8cSSatish Balay PetscFunctionReturn(0); 2026a30f8f8cSSatish Balay } 2027a30f8f8cSSatish Balay 2028a30f8f8cSSatish Balay 20294a2ae208SSatish Balay #undef __FUNCT__ 20304a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20316849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2032a30f8f8cSSatish Balay { 2033a30f8f8cSSatish Balay Mat mat; 2034a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2035dfbe8321SBarry Smith PetscErrorCode ierr; 2036d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2037387bc808SHong Zhang PetscScalar *array; 2038a30f8f8cSSatish Balay 2039a30f8f8cSSatish Balay PetscFunctionBegin; 2040a30f8f8cSSatish Balay *newmat = 0; 20417adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2042d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20437adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20441d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 204526283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 204626283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2047e1b6402fSHong Zhang 2048d5f3da31SBarry Smith mat->factortype = matin->factortype; 2049273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 205082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20517fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20527fff6886SHong Zhang 2053b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2054a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2055a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2056a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2057a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2058a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2059a30f8f8cSSatish Balay 2060899cda47SBarry Smith 2061a30f8f8cSSatish Balay a->size = oldmat->size; 2062a30f8f8cSSatish Balay a->rank = oldmat->rank; 2063a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2064a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2065a30f8f8cSSatish Balay a->rowindices = 0; 2066a30f8f8cSSatish Balay a->rowvalues = 0; 2067a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2068a30f8f8cSSatish Balay a->barray = 0; 2069899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2070899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2071899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2072899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2073a30f8f8cSSatish Balay 2074a30f8f8cSSatish Balay /* hash table stuff */ 2075a30f8f8cSSatish Balay a->ht = 0; 2076a30f8f8cSSatish Balay a->hd = 0; 2077a30f8f8cSSatish Balay a->ht_size = 0; 2078a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2079a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2080a30f8f8cSSatish Balay a->ht_total_ct = 0; 2081a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2082a30f8f8cSSatish Balay 2083899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2084a30f8f8cSSatish Balay if (oldmat->colmap) { 2085a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2086a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2087a30f8f8cSSatish Balay #else 20881302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 208952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20901302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2091a30f8f8cSSatish Balay #endif 2092a30f8f8cSSatish Balay } else a->colmap = 0; 2093387bc808SHong Zhang 2094a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20951302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 209652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20971302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2098a30f8f8cSSatish Balay } else a->garray = 0; 2099a30f8f8cSSatish Balay 2100533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2101a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 210252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 210452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 210582327fa8SHong Zhang 210682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 210752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 210882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 210952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2110387bc808SHong Zhang 2111387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21121ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2113387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2114387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21151ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21161ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2117387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21181ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 211952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 212152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 212252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 212352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2124387bc808SHong Zhang 2125387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2126387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2127387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 212852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 212982327fa8SHong Zhang 2130a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 213152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 213352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21347adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2135a30f8f8cSSatish Balay *newmat = mat; 2136a30f8f8cSSatish Balay PetscFunctionReturn(0); 2137a30f8f8cSSatish Balay } 2138a30f8f8cSSatish Balay 21394a2ae208SSatish Balay #undef __FUNCT__ 21404a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2141a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2142a30f8f8cSSatish Balay { 2143a30f8f8cSSatish Balay Mat A; 21446849ba73SBarry Smith PetscErrorCode ierr; 214513f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 214687828ca2SBarry Smith PetscScalar *vals,*buf; 2147a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2148a30f8f8cSSatish Balay MPI_Status status; 2149e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 215013f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21512fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21521302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21531302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21541302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 215513f74950SBarry Smith int fd; 2156a30f8f8cSSatish Balay 2157a30f8f8cSSatish Balay PetscFunctionBegin; 215877925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21598c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21608c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2161a30f8f8cSSatish Balay 2162a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay if (!rank) { 2165b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2167e32f2f54SBarry Smith if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2168*e7e72b3dSBarry Smith if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2169a30f8f8cSSatish Balay } 2170a30f8f8cSSatish Balay 2171a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2173a30f8f8cSSatish Balay 2174e32f2f54SBarry Smith if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 2175a30f8f8cSSatish Balay 2176a30f8f8cSSatish Balay /* 2177a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2178a30f8f8cSSatish Balay divisible by the blocksize 2179a30f8f8cSSatish Balay */ 2180a30f8f8cSSatish Balay Mbs = M/bs; 2181a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2182a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2183a30f8f8cSSatish Balay else Mbs++; 2184a30f8f8cSSatish Balay if (extra_rows &&!rank) { 21851e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2186a30f8f8cSSatish Balay } 2187a30f8f8cSSatish Balay 2188a30f8f8cSSatish Balay /* determine ownership of all rows */ 2189a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2190a30f8f8cSSatish Balay m = mbs*bs; 219174ed9c26SBarry Smith ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 2192e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2193e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay rowners[0] = 0; 2195a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2196a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2197a30f8f8cSSatish Balay rstart = rowners[rank]; 2198a30f8f8cSSatish Balay rend = rowners[rank+1]; 2199a30f8f8cSSatish Balay 2200a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22012fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay if (!rank) { 22031302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2206a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2208a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay } else { 2211a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay } 2213a30f8f8cSSatish Balay 22140222edb1SHong Zhang if (!rank) { /* procs[0] */ 2215a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22161302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22171302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2218a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2219a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2220a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2221a30f8f8cSSatish Balay } 2222a30f8f8cSSatish Balay } 2223a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2224a30f8f8cSSatish Balay 2225a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2226a30f8f8cSSatish Balay maxnz = 0; 2227a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2228a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2229a30f8f8cSSatish Balay } 22301302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay 2232a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2233a30f8f8cSSatish Balay nz = procsnz[0]; 22341302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2235a30f8f8cSSatish Balay mycols = ibuf; 2236a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2237a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2238a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2239a30f8f8cSSatish Balay 2240a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2241a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2242a30f8f8cSSatish Balay nz = procsnz[i]; 2243a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2244a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2245a30f8f8cSSatish Balay } 2246a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2247a30f8f8cSSatish Balay if (size != 1) { 2248a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2249a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2250a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2251a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay } 2253a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22540222edb1SHong Zhang } else { /* procs[i], i>0 */ 2255a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2256a30f8f8cSSatish Balay nz = 0; 2257a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2258a30f8f8cSSatish Balay nz += locrowlens[i]; 2259a30f8f8cSSatish Balay } 22601302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2261a30f8f8cSSatish Balay mycols = ibuf; 2262a30f8f8cSSatish Balay /* receive message of column indices*/ 2263a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2264a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 2265e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2266a30f8f8cSSatish Balay } 2267a30f8f8cSSatish Balay 2268a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 226974ed9c26SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 227074ed9c26SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 227174ed9c26SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 227274ed9c26SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 227374ed9c26SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 227474ed9c26SBarry Smith rowcount = 0; 227574ed9c26SBarry Smith nzcount = 0; 2276a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2277a30f8f8cSSatish Balay dcount = 0; 2278a30f8f8cSSatish Balay odcount = 0; 2279a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2280a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2281a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22820222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2283a30f8f8cSSatish Balay if (!mask[tmp]) { 2284a30f8f8cSSatish Balay mask[tmp] = 1; 22850222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22860222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2287a30f8f8cSSatish Balay } 2288a30f8f8cSSatish Balay } 2289a30f8f8cSSatish Balay rowcount++; 2290a30f8f8cSSatish Balay } 2291a30f8f8cSSatish Balay 22920222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22930222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2294a30f8f8cSSatish Balay 2295a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2296a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2297a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2298a30f8f8cSSatish Balay } 2299a30f8f8cSSatish Balay 2300a30f8f8cSSatish Balay /* create our matrix */ 2301f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2302f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 230322191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 230417fa8088SHong Zhang ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 230522191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2306a30f8f8cSSatish Balay 2307a30f8f8cSSatish Balay if (!rank) { 230887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2309a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2310a30f8f8cSSatish Balay nz = procsnz[0]; 2311a30f8f8cSSatish Balay vals = buf; 2312a30f8f8cSSatish Balay mycols = ibuf; 2313a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2314a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2315a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2316a30f8f8cSSatish Balay 2317a30f8f8cSSatish Balay /* insert into matrix */ 2318a30f8f8cSSatish Balay jj = rstart*bs; 2319a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23207e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2321a30f8f8cSSatish Balay mycols += locrowlens[i]; 2322a30f8f8cSSatish Balay vals += locrowlens[i]; 2323a30f8f8cSSatish Balay jj++; 2324a30f8f8cSSatish Balay } 23257e06b45fSHong Zhang 2326a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2327a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2328a30f8f8cSSatish Balay nz = procsnz[i]; 2329a30f8f8cSSatish Balay vals = buf; 2330a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23317adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2332a30f8f8cSSatish Balay } 2333a30f8f8cSSatish Balay /* the last proc */ 2334a30f8f8cSSatish Balay if (size != 1){ 2335a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2336a30f8f8cSSatish Balay vals = buf; 2337a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2338a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23397adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2340a30f8f8cSSatish Balay } 2341a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23427e06b45fSHong Zhang 2343a30f8f8cSSatish Balay } else { 2344a30f8f8cSSatish Balay /* receive numeric values */ 234587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2346a30f8f8cSSatish Balay 2347a30f8f8cSSatish Balay /* receive message of values*/ 2348a30f8f8cSSatish Balay vals = buf; 2349a30f8f8cSSatish Balay mycols = ibuf; 23507adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2351a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2352e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2353a30f8f8cSSatish Balay 2354a30f8f8cSSatish Balay /* insert into matrix */ 2355a30f8f8cSSatish Balay jj = rstart*bs; 2356a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2357a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay mycols += locrowlens[i]; 2359a30f8f8cSSatish Balay vals += locrowlens[i]; 2360a30f8f8cSSatish Balay jj++; 2361a30f8f8cSSatish Balay } 2362a30f8f8cSSatish Balay } 23637e06b45fSHong Zhang 2364a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2365a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 236774ed9c26SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 236874ed9c26SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 236974ed9c26SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 2370a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 237222191285SKris Buschelman *newmat = A; 2373a30f8f8cSSatish Balay PetscFunctionReturn(0); 2374a30f8f8cSSatish Balay } 2375a30f8f8cSSatish Balay 23764a2ae208SSatish Balay #undef __FUNCT__ 23774a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2378dcf5cc72SBarry Smith /*XXXXX@ 2379a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2380a30f8f8cSSatish Balay 2381a30f8f8cSSatish Balay Input Parameters: 2382a30f8f8cSSatish Balay . mat - the matrix 2383a30f8f8cSSatish Balay . fact - factor 2384a30f8f8cSSatish Balay 2385a30f8f8cSSatish Balay Collective on Mat 2386a30f8f8cSSatish Balay 2387a30f8f8cSSatish Balay Level: advanced 2388a30f8f8cSSatish Balay 2389a30f8f8cSSatish Balay Notes: 2390a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2391a30f8f8cSSatish Balay 2392a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2393a30f8f8cSSatish Balay 2394a30f8f8cSSatish Balay .seealso: MatSetOption() 2395dcf5cc72SBarry Smith @XXXXX*/ 2396dcf5cc72SBarry Smith 239724d5174aSHong Zhang 23984a2ae208SSatish Balay #undef __FUNCT__ 2399985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2400985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 240124d5174aSHong Zhang { 240224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2403f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2404ca54ac64SHong Zhang PetscReal atmp; 240587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2406dfbe8321SBarry Smith PetscErrorCode ierr; 24071302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24081302d50aSBarry Smith PetscMPIInt rank,size; 24091302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 241087828ca2SBarry Smith PetscScalar *va; 24118a1c53f2SBarry Smith MatScalar *ba; 2412f4c0e9e4SHong Zhang MPI_Status stat; 241324d5174aSHong Zhang 241424d5174aSHong Zhang PetscFunctionBegin; 2415e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2416985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24171ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2418f4c0e9e4SHong Zhang 24197adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24207adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2421f4c0e9e4SHong Zhang 2422d0f46423SBarry Smith bs = A->rmap->bs; 2423f4c0e9e4SHong Zhang mbs = a->mbs; 2424f4c0e9e4SHong Zhang Mbs = a->Mbs; 2425f4c0e9e4SHong Zhang ba = b->a; 2426f4c0e9e4SHong Zhang bi = b->i; 2427f4c0e9e4SHong Zhang bj = b->j; 2428f4c0e9e4SHong Zhang 2429f4c0e9e4SHong Zhang /* find ownerships */ 2430d0f46423SBarry Smith rowners_bs = A->rmap->range; 2431f4c0e9e4SHong Zhang 2432f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 243382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2434ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2435f4c0e9e4SHong Zhang 2436f4c0e9e4SHong Zhang /* row_max for B */ 2437b8475685SHong Zhang if (rank != size-1){ 2438f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2439f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2440f4c0e9e4SHong Zhang brow = bs*i; 2441f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2442f4c0e9e4SHong Zhang bcol = bs*(*bj); 2443f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2444ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 244504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2446f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2447f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2448ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2449ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2450f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2451f4c0e9e4SHong Zhang } 2452f4c0e9e4SHong Zhang } 2453f4c0e9e4SHong Zhang bj++; 2454f4c0e9e4SHong Zhang } 2455f4c0e9e4SHong Zhang } 2456f4c0e9e4SHong Zhang 2457f4c0e9e4SHong Zhang /* send values to its owners */ 2458f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2459f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2460ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24617adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2462ca54ac64SHong Zhang } 2463f4c0e9e4SHong Zhang } 2464f4c0e9e4SHong Zhang 2465f4c0e9e4SHong Zhang /* receive values */ 2466ca54ac64SHong Zhang if (rank){ 2467f4c0e9e4SHong Zhang rvalues = work; 2468ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2469f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24707adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2471f4c0e9e4SHong Zhang /* process values */ 2472f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2473ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2474f4c0e9e4SHong Zhang } 2475f4c0e9e4SHong Zhang } 2476ca54ac64SHong Zhang } 2477f4c0e9e4SHong Zhang 24781ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2479ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 248024d5174aSHong Zhang PetscFunctionReturn(0); 248124d5174aSHong Zhang } 24822798e883SHong Zhang 24832798e883SHong Zhang #undef __FUNCT__ 248441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 248541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24862798e883SHong Zhang { 24872798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2488dfbe8321SBarry Smith PetscErrorCode ierr; 2489d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 2490fa22f6d0SBarry Smith PetscScalar *x,*b,*ptr,*from; 2491ffe4fb16SHong Zhang Vec bb1; 2492ffe4fb16SHong Zhang 2493ffe4fb16SHong Zhang PetscFunctionBegin; 2494e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2495e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2496ffe4fb16SHong Zhang 2497a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 249841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2499a2b30743SBarry Smith PetscFunctionReturn(0); 2500a2b30743SBarry Smith } 2501a2b30743SBarry Smith 2502ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2503ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 250441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2505ffe4fb16SHong Zhang its--; 2506ffe4fb16SHong Zhang } 2507ffe4fb16SHong Zhang 2508ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2509ffe4fb16SHong Zhang while (its--){ 2510ffe4fb16SHong Zhang 2511ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2512ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2513ffe4fb16SHong Zhang 2514ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25151ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25161ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2517ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25181ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2519ffe4fb16SHong Zhang 2520efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2521ffe4fb16SHong Zhang 2522ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25231ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25241ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2525ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25261ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2527ffe4fb16SHong Zhang 2528ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2529fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2530ffe4fb16SHong Zhang 2531ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25321ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25331ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2534ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang 2536ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2537ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2538ffe4fb16SHong Zhang 2539ffe4fb16SHong Zhang /* local diagonal sweep */ 254041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2541ffe4fb16SHong Zhang } 2542ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2543fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 254441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2545fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 254641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2547fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2548fa22f6d0SBarry Smith Vec xx1; 2549fa22f6d0SBarry Smith PetscTruth hasop; 255020f1ed55SBarry Smith const PetscScalar *diag; 2551887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 255220f1ed55SBarry Smith PetscInt i,n; 2553fa22f6d0SBarry Smith 2554fa22f6d0SBarry Smith if (!mat->xx1) { 2555fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2556fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2557fa22f6d0SBarry Smith } 2558fa22f6d0SBarry Smith xx1 = mat->xx1; 2559fa22f6d0SBarry Smith bb1 = mat->bb1; 2560fa22f6d0SBarry Smith 256141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2562fa22f6d0SBarry Smith 2563fa22f6d0SBarry Smith if (!mat->diag) { 2564effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2565fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2566fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2567fa22f6d0SBarry Smith } 2568fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2569fa22f6d0SBarry Smith 2570fa22f6d0SBarry Smith if (hasop) { 2571fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2572887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 257320f1ed55SBarry Smith } else { 257420f1ed55SBarry Smith /* 257520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 257620f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2577887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 257820f1ed55SBarry Smith */ 257920f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 258020f1ed55SBarry Smith ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 258120f1ed55SBarry Smith ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 258220f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 258320f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2584887ee2caSBarry Smith if (omega == 1.0) { 258520f1ed55SBarry Smith for (i=0; i<n; i++) { 258620f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 258720f1ed55SBarry Smith } 258820f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2589887ee2caSBarry Smith } else { 2590887ee2caSBarry Smith for (i=0; i<n; i++) { 2591887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2592887ee2caSBarry Smith } 2593887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2594887ee2caSBarry Smith } 259520f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 259620f1ed55SBarry Smith ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 259720f1ed55SBarry Smith ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 259820f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 259920f1ed55SBarry Smith } 2600fa22f6d0SBarry Smith 2601fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2602fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2603fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2604fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2605fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2606fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2607fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2608fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2609fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2610fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2611effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2612fa22f6d0SBarry Smith 2613fa22f6d0SBarry Smith /* local sweep */ 261441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2615fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2616ffe4fb16SHong Zhang } else { 2617e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2618ffe4fb16SHong Zhang } 2619ffe4fb16SHong Zhang PetscFunctionReturn(0); 2620ffe4fb16SHong Zhang } 2621ffe4fb16SHong Zhang 2622ffe4fb16SHong Zhang #undef __FUNCT__ 262341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 262441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2625ffe4fb16SHong Zhang { 2626ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2627dfbe8321SBarry Smith PetscErrorCode ierr; 26282798e883SHong Zhang Vec lvec1,bb1; 26292798e883SHong Zhang 26302798e883SHong Zhang PetscFunctionBegin; 2631e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2632e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26332798e883SHong Zhang 2634c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26352798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 263641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26372798e883SHong Zhang its--; 26382798e883SHong Zhang } 26392798e883SHong Zhang 26402798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26412798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26422798e883SHong Zhang while (its--){ 2643ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26442798e883SHong Zhang 26452798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26462798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2647efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26482798e883SHong Zhang 2649ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26502798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2651ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26522798e883SHong Zhang 26532798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2654efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26552798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26562798e883SHong Zhang 2657ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26582798e883SHong Zhang 2659c14dc6b6SHong Zhang /* diagonal sweep */ 266041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26612798e883SHong Zhang } 26622798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26632798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2664c14dc6b6SHong Zhang } else { 2665e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2666c14dc6b6SHong Zhang } 26672798e883SHong Zhang PetscFunctionReturn(0); 26682798e883SHong Zhang } 26692798e883SHong Zhang 2670