1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237a30f8f8cSSatish Balay a_noinsert:; \ 238a30f8f8cSSatish Balay ailen[brow] = nrow; \ 239a8f51744SPierre Jolivet } while (0) 240e5e170daSBarry Smith 241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 242a8f51744SPierre Jolivet do { \ 243a30f8f8cSSatish Balay brow = row / bs; \ 2449371c9d4SSatish Balay rp = bj + bi[brow]; \ 2459371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2469371c9d4SSatish Balay rmax = bimax[brow]; \ 2479371c9d4SSatish Balay nrow = bilen[brow]; \ 248a30f8f8cSSatish Balay bcol = col / bs; \ 2499371c9d4SSatish Balay ridx = row % bs; \ 2509371c9d4SSatish Balay cidx = col % bs; \ 2519371c9d4SSatish Balay low = 0; \ 2529371c9d4SSatish Balay high = nrow; \ 253a30f8f8cSSatish Balay while (high - low > 3) { \ 254a30f8f8cSSatish Balay t = (low + high) / 2; \ 255a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 256a30f8f8cSSatish Balay else low = t; \ 257a30f8f8cSSatish Balay } \ 258a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 259a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 260a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 261a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 262a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 263a30f8f8cSSatish Balay else *bap = value; \ 264a30f8f8cSSatish Balay goto b_noinsert; \ 265a30f8f8cSSatish Balay } \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2685f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 269fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 270a30f8f8cSSatish Balay N = nrow++ - 1; \ 271a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 275a30f8f8cSSatish Balay rp[_i] = bcol; \ 276a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 277a30f8f8cSSatish Balay b_noinsert:; \ 278a30f8f8cSSatish Balay bilen[brow] = nrow; \ 279a8f51744SPierre Jolivet } while (0) 280a30f8f8cSSatish Balay 281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 282da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 283a30f8f8cSSatish Balay */ 28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 285d71ae5a4SJacob Faibussowitsch { 286a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 287a30f8f8cSSatish Balay MatScalar value; 288ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2891302d50aSBarry Smith PetscInt i, j, row, col; 290d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 291d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 292d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 293a30f8f8cSSatish Balay 294a30f8f8cSSatish Balay /* Some Variables required in the macro */ 295a30f8f8cSSatish Balay Mat A = baij->A; 29657508eceSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 2971302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 298a30f8f8cSSatish Balay MatScalar *aa = a->a; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay Mat B = baij->B; 30157508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 3021302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 303a30f8f8cSSatish Balay MatScalar *ba = b->a; 304a30f8f8cSSatish Balay 3051302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3061302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 307a30f8f8cSSatish Balay MatScalar *ap, *bap; 308a30f8f8cSSatish Balay 309a30f8f8cSSatish Balay /* for stash */ 3100298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3110298fd71SBarry Smith MatScalar *v_loc = NULL; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 314a30f8f8cSSatish Balay if (!baij->donotstash) { 31559ffdab8SBarry Smith if (n > baij->n_loc) { 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32026fbe8dcSKarl Rupp 32159ffdab8SBarry Smith baij->n_loc = n; 32259ffdab8SBarry Smith } 32359ffdab8SBarry Smith in_loc = baij->in_loc; 32459ffdab8SBarry Smith v_loc = baij->v_loc; 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay 327a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 328a30f8f8cSSatish Balay if (im[i] < 0) continue; 3295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 330a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 331a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 332a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33301b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33401b2bd88SHong Zhang if (a->ignore_ltriangular) { 33501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33626fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33701b2bd88SHong Zhang } 338a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 339a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3409371c9d4SSatish Balay brow = row / bs; 3419371c9d4SSatish Balay bcol = col / bs; 342a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 343db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 344db4deed7SKarl Rupp else value = v[i + j * m]; 345d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3469566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 347f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 348f7d195e4SLawrence Mitchell continue; 349f7d195e4SLawrence Mitchell } else { 350f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 351f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 352a30f8f8cSSatish Balay if (mat->was_assembled) { 35348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 354a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 355eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35671730473SSatish Balay col = col - 1; 357a30f8f8cSSatish Balay #else 35871730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 359a30f8f8cSSatish Balay #endif 360f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) { 3619566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 362a30f8f8cSSatish Balay col = in[j]; 363a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 364a30f8f8cSSatish Balay B = baij->B; 36557508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 3669371c9d4SSatish Balay bimax = b->imax; 3679371c9d4SSatish Balay bi = b->i; 3689371c9d4SSatish Balay bilen = b->ilen; 3699371c9d4SSatish Balay bj = b->j; 370a30f8f8cSSatish Balay ba = b->a; 37171730473SSatish Balay } else col += in[j] % bs; 372a30f8f8cSSatish Balay } else col = in[j]; 373db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 374db4deed7SKarl Rupp else value = v[i + j * m]; 375d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3769566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } 379a30f8f8cSSatish Balay } else { /* off processor entry */ 3805f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 381a30f8f8cSSatish Balay if (!baij->donotstash) { 3825080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 383a30f8f8cSSatish Balay n_loc = 0; 384a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 385f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 386a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 387a30f8f8cSSatish Balay if (roworiented) { 388a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 389a30f8f8cSSatish Balay } else { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay n_loc++; 393a30f8f8cSSatish Balay } 3949566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 3983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay 401d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 402d71ae5a4SJacob Faibussowitsch { 40336bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40436bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40536bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40636bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40736bd2089SBarry Smith PetscBool roworiented = a->roworiented; 40836bd2089SBarry Smith const PetscScalar *value = v; 40936bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41036bd2089SBarry Smith 41136bd2089SBarry Smith PetscFunctionBegin; 41236bd2089SBarry Smith if (col < row) { 4133ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp = aj + ai[row]; 41736bd2089SBarry Smith ap = aa + bs2 * ai[row]; 41836bd2089SBarry Smith rmax = imax[row]; 41936bd2089SBarry Smith nrow = ailen[row]; 42036bd2089SBarry Smith value = v; 42136bd2089SBarry Smith low = 0; 42236bd2089SBarry Smith high = nrow; 42336bd2089SBarry Smith 42436bd2089SBarry Smith while (high - low > 7) { 42536bd2089SBarry Smith t = (low + high) / 2; 42636bd2089SBarry Smith if (rp[t] > col) high = t; 42736bd2089SBarry Smith else low = t; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith for (i = low; i < high; i++) { 43036bd2089SBarry Smith if (rp[i] > col) break; 43136bd2089SBarry Smith if (rp[i] == col) { 43236bd2089SBarry Smith bap = ap + bs2 * i; 43336bd2089SBarry Smith if (roworiented) { 43436bd2089SBarry Smith if (is == ADD_VALUES) { 43536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 436ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43736bd2089SBarry Smith } 43836bd2089SBarry Smith } else { 43936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 440ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44136bd2089SBarry Smith } 44236bd2089SBarry Smith } 44336bd2089SBarry Smith } else { 44436bd2089SBarry Smith if (is == ADD_VALUES) { 44536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 446ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44736bd2089SBarry Smith } 44836bd2089SBarry Smith } else { 44936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 450ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45136bd2089SBarry Smith } 45236bd2089SBarry Smith } 45336bd2089SBarry Smith } 45436bd2089SBarry Smith goto noinsert2; 45536bd2089SBarry Smith } 45636bd2089SBarry Smith } 45736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4585f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 45936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4609371c9d4SSatish Balay N = nrow++ - 1; 4619371c9d4SSatish Balay high++; 46236bd2089SBarry Smith /* shift up all the later entries in this row */ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46536bd2089SBarry Smith rp[i] = col; 46636bd2089SBarry Smith bap = ap + bs2 * i; 46736bd2089SBarry Smith if (roworiented) { 46836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 469ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47036bd2089SBarry Smith } 47136bd2089SBarry Smith } else { 47236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 473ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith noinsert2:; 47736bd2089SBarry Smith ailen[row] = nrow; 4783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47936bd2089SBarry Smith } 48036bd2089SBarry Smith 48136bd2089SBarry Smith /* 48236bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48336bd2089SBarry Smith */ 484d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 485d71ae5a4SJacob Faibussowitsch { 48636bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48736bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 48836bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 48936bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49036bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49136bd2089SBarry Smith const PetscScalar *value = v; 49236bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49336bd2089SBarry Smith 49436bd2089SBarry Smith PetscFunctionBegin; 49536bd2089SBarry Smith rp = aj + ai[row]; 49636bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49736bd2089SBarry Smith rmax = imax[row]; 49836bd2089SBarry Smith nrow = ailen[row]; 49936bd2089SBarry Smith low = 0; 50036bd2089SBarry Smith high = nrow; 50136bd2089SBarry Smith value = v; 50236bd2089SBarry Smith while (high - low > 7) { 50336bd2089SBarry Smith t = (low + high) / 2; 50436bd2089SBarry Smith if (rp[t] > col) high = t; 50536bd2089SBarry Smith else low = t; 50636bd2089SBarry Smith } 50736bd2089SBarry Smith for (i = low; i < high; i++) { 50836bd2089SBarry Smith if (rp[i] > col) break; 50936bd2089SBarry Smith if (rp[i] == col) { 51036bd2089SBarry Smith bap = ap + bs2 * i; 51136bd2089SBarry Smith if (roworiented) { 51236bd2089SBarry Smith if (is == ADD_VALUES) { 51336bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 514ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51536bd2089SBarry Smith } 51636bd2089SBarry Smith } else { 51736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 518ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 51936bd2089SBarry Smith } 52036bd2089SBarry Smith } 52136bd2089SBarry Smith } else { 52236bd2089SBarry Smith if (is == ADD_VALUES) { 52336bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 524ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52536bd2089SBarry Smith bap += bs; 52636bd2089SBarry Smith } 52736bd2089SBarry Smith } else { 52836bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 529ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53036bd2089SBarry Smith bap += bs; 53136bd2089SBarry Smith } 53236bd2089SBarry Smith } 53336bd2089SBarry Smith } 53436bd2089SBarry Smith goto noinsert2; 53536bd2089SBarry Smith } 53636bd2089SBarry Smith } 53736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5385f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 53936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5409371c9d4SSatish Balay N = nrow++ - 1; 5419371c9d4SSatish Balay high++; 54236bd2089SBarry Smith /* shift up all the later entries in this row */ 5439566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5449566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54536bd2089SBarry Smith rp[i] = col; 54636bd2089SBarry Smith bap = ap + bs2 * i; 54736bd2089SBarry Smith if (roworiented) { 54836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 549ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55036bd2089SBarry Smith } 55136bd2089SBarry Smith } else { 55236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 553ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55436bd2089SBarry Smith } 55536bd2089SBarry Smith } 55636bd2089SBarry Smith noinsert2:; 55736bd2089SBarry Smith ailen[row] = nrow; 5583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55936bd2089SBarry Smith } 56036bd2089SBarry Smith 56136bd2089SBarry Smith /* 56236bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56336bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56436bd2089SBarry Smith */ 56566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 566d71ae5a4SJacob Faibussowitsch { 5670880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 568f15d580aSBarry Smith const MatScalar *value; 569f15d580aSBarry Smith MatScalar *barray = baij->barray; 570ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 571899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 572476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 573476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5740880e062SHong Zhang 575a30f8f8cSSatish Balay PetscFunctionBegin; 5760880e062SHong Zhang if (!barray) { 5779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5780880e062SHong Zhang baij->barray = barray; 5790880e062SHong Zhang } 5800880e062SHong Zhang 5810880e062SHong Zhang if (roworiented) { 5820880e062SHong Zhang stepval = (n - 1) * bs; 5830880e062SHong Zhang } else { 5840880e062SHong Zhang stepval = (m - 1) * bs; 5850880e062SHong Zhang } 5860880e062SHong Zhang for (i = 0; i < m; i++) { 5870880e062SHong Zhang if (im[i] < 0) continue; 5886bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5890880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5900880e062SHong Zhang row = im[i] - rstart; 5910880e062SHong Zhang for (j = 0; j < n; j++) { 592f3f98c53SJed Brown if (im[i] > in[j]) { 593f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 594e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 595f3f98c53SJed Brown } 5960880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5970880e062SHong Zhang if ((roworiented) && (n == 1)) { 598f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5990880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6010880e062SHong Zhang } else { /* Here a copy is required */ 6020880e062SHong Zhang if (roworiented) { 6030880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6040880e062SHong Zhang } else { 6050880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6060880e062SHong Zhang } 6070880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 608ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6090880e062SHong Zhang } 6100880e062SHong Zhang barray -= bs2; 6110880e062SHong Zhang } 6120880e062SHong Zhang 6130880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6140880e062SHong Zhang col = in[j] - cstart; 6159566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 616f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 617f7d195e4SLawrence Mitchell continue; 618f7d195e4SLawrence Mitchell } else { 619f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6200880e062SHong Zhang if (mat->was_assembled) { 62148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6220880e062SHong Zhang 6230880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 624eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 625b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 6260880e062SHong Zhang #else 627b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 6280880e062SHong Zhang #endif 629f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 6309566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6310880e062SHong Zhang col = in[j]; 6320880e062SHong Zhang } 63326fbe8dcSKarl Rupp } else col = in[j]; 6349566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6350880e062SHong Zhang } 6360880e062SHong Zhang } 6370880e062SHong Zhang } else { 6385f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6390880e062SHong Zhang if (!baij->donotstash) { 6400880e062SHong Zhang if (roworiented) { 6419566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6420880e062SHong Zhang } else { 6439566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6440880e062SHong Zhang } 6450880e062SHong Zhang } 6460880e062SHong Zhang } 6470880e062SHong Zhang } 6483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 65166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 652d71ae5a4SJacob Faibussowitsch { 653f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 654d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 655d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay PetscFunctionBegin; 658a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 65954c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66054c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 661a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 662a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 663a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 66454c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66554c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 666a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 667a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6689566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 669a30f8f8cSSatish Balay } else { 67048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 671a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 672eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 673a30f8f8cSSatish Balay data--; 674a30f8f8cSSatish Balay #else 675a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 676a30f8f8cSSatish Balay #endif 677a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 678a30f8f8cSSatish Balay else { 679a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6809566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay } 684f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 685a30f8f8cSSatish Balay } 6863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay 68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 690d71ae5a4SJacob Faibussowitsch { 691a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 692a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 693a30f8f8cSSatish Balay 694a30f8f8cSSatish Balay PetscFunctionBegin; 695a30f8f8cSSatish Balay if (baij->size == 1) { 6969566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 697a30f8f8cSSatish Balay } else { 698a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7009566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7019371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7029371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7039566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7049371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7059371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 706462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7078f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7089566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7090b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7100b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7110b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 712*e91c04dfSPierre Jolivet PetscReal *rsum, vabs; 713899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 714d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7150b8dc8d2SHong Zhang MatScalar *v; 7160b8dc8d2SHong Zhang 717*e91c04dfSPierre Jolivet PetscCall(PetscMalloc1(mat->cmap->N, &rsum)); 7189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7190b8dc8d2SHong Zhang /* Amat */ 7209371c9d4SSatish Balay v = amat->a; 7219371c9d4SSatish Balay jj = amat->j; 7220b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7230b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7240b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7250b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7269371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7279371c9d4SSatish Balay jj++; 7280b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7290b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7309371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7319371c9d4SSatish Balay v++; 7320b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7330b8dc8d2SHong Zhang /* non-diagonal block */ 7340b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7350b8dc8d2SHong Zhang } 7360b8dc8d2SHong Zhang } 7370b8dc8d2SHong Zhang } 7389566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7390b8dc8d2SHong Zhang } 7400b8dc8d2SHong Zhang /* Bmat */ 7419371c9d4SSatish Balay v = bmat->a; 7429371c9d4SSatish Balay jj = bmat->j; 7430b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7440b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7450b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7460b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7479371c9d4SSatish Balay gcol = bs * garray[*jj]; 7489371c9d4SSatish Balay jj++; 7490b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7500b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7519371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7529371c9d4SSatish Balay v++; 7530b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7540b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7550b8dc8d2SHong Zhang } 7560b8dc8d2SHong Zhang } 7570b8dc8d2SHong Zhang } 7589566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7590b8dc8d2SHong Zhang } 760*e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7610b8dc8d2SHong Zhang *norm = 0.0; 762d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 763*e91c04dfSPierre Jolivet if (rsum[col] > *norm) *norm = rsum[col]; 7640b8dc8d2SHong Zhang } 765*e91c04dfSPierre Jolivet PetscCall(PetscFree(rsum)); 766f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 767a30f8f8cSSatish Balay } 7683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay 77166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 772d71ae5a4SJacob Faibussowitsch { 773a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7741302d50aSBarry Smith PetscInt nstash, reallocs; 775a30f8f8cSSatish Balay 776a30f8f8cSSatish Balay PetscFunctionBegin; 7773ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 778a30f8f8cSSatish Balay 7799566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7809566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7819566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7829566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7839566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7849566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay 78866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 789d71ae5a4SJacob Faibussowitsch { 790a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 791a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 79213f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 793e44c0bd4SBarry Smith PetscInt *row, *col; 794ace3abfcSBarry Smith PetscBool other_disassembled; 79513f74950SBarry Smith PetscMPIInt n; 796ace3abfcSBarry Smith PetscBool r1, r2, r3; 797a30f8f8cSSatish Balay MatScalar *val; 798a30f8f8cSSatish Balay 79991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 800a30f8f8cSSatish Balay PetscFunctionBegin; 8014cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 802a30f8f8cSSatish Balay while (1) { 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 804a30f8f8cSSatish Balay if (!flg) break; 805a30f8f8cSSatish Balay 806a30f8f8cSSatish Balay for (i = 0; i < n;) { 807a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 80826fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 80926fbe8dcSKarl Rupp if (row[j] != rstart) break; 81026fbe8dcSKarl Rupp } 811a30f8f8cSSatish Balay if (j < n) ncols = j - i; 812a30f8f8cSSatish Balay else ncols = n - i; 813a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 815a30f8f8cSSatish Balay i = j; 816a30f8f8cSSatish Balay } 817a30f8f8cSSatish Balay } 8189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 819a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8205e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 821a30f8f8cSSatish Balay restore the original flags */ 822a30f8f8cSSatish Balay r1 = baij->roworiented; 823a30f8f8cSSatish Balay r2 = a->roworiented; 82491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 82526fbe8dcSKarl Rupp 826a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 827a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 82826fbe8dcSKarl Rupp 82991c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 830a30f8f8cSSatish Balay while (1) { 8319566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 832a30f8f8cSSatish Balay if (!flg) break; 833a30f8f8cSSatish Balay 834a30f8f8cSSatish Balay for (i = 0; i < n;) { 835a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 83626fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 83726fbe8dcSKarl Rupp if (row[j] != rstart) break; 83826fbe8dcSKarl Rupp } 839a30f8f8cSSatish Balay if (j < n) ncols = j - i; 840a30f8f8cSSatish Balay else ncols = n - i; 8419566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 842a30f8f8cSSatish Balay i = j; 843a30f8f8cSSatish Balay } 844a30f8f8cSSatish Balay } 8459566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 84626fbe8dcSKarl Rupp 847a30f8f8cSSatish Balay baij->roworiented = r1; 848a30f8f8cSSatish Balay a->roworiented = r2; 84926fbe8dcSKarl Rupp 85091c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 851a30f8f8cSSatish Balay } 852a30f8f8cSSatish Balay 8539566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8549566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 855a30f8f8cSSatish Balay 856a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8576aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 858a30f8f8cSSatish Balay /* 859a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 860a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 861a30f8f8cSSatish Balay */ 862a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 863462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 86448a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 865a30f8f8cSSatish Balay } 866a30f8f8cSSatish Balay 8679371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 870a30f8f8cSSatish Balay 8719566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 87226fbe8dcSKarl Rupp 873f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8744f9cfa9eSBarry Smith 8754f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 876f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 877e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 878462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 879e56f5c9eSBarry Smith } 8803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 881a30f8f8cSSatish Balay } 882a30f8f8cSSatish Balay 883dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8849804daf3SBarry Smith #include <petscdraw.h> 885d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 886d71ae5a4SJacob Faibussowitsch { 887a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 888d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8897da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 890ace3abfcSBarry Smith PetscBool iascii, isdraw; 891b0a32e0cSBarry Smith PetscViewer sviewer; 892f3ef73ceSBarry Smith PetscViewerFormat format; 893a30f8f8cSSatish Balay 894a30f8f8cSSatish Balay PetscFunctionBegin; 8959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8969566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 89732077d6dSBarry Smith if (iascii) { 8989566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 899456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 900a30f8f8cSSatish Balay MatInfo info; 9019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9029566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9049371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 905835f2295SStefano Zampini mat->rmap->bs, info.memory)); 9069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9139566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 915fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 918c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 920a30f8f8cSSatish Balay } 921a30f8f8cSSatish Balay } 922a30f8f8cSSatish Balay 923a30f8f8cSSatish Balay if (isdraw) { 924b0a32e0cSBarry Smith PetscDraw draw; 925ace3abfcSBarry Smith PetscBool isnull; 9269566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9279566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9283ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 929a30f8f8cSSatish Balay } 930a30f8f8cSSatish Balay 9317da1fb6eSBarry Smith { 932a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 933a30f8f8cSSatish Balay Mat A; 93465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 93565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 936d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 937a30f8f8cSSatish Balay MatScalar *a; 9383e219373SBarry Smith const char *matname; 939a30f8f8cSSatish Balay 940f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9419566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 942dd400576SPatrick Sanan if (rank == 0) { 9439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 944a30f8f8cSSatish Balay } else { 9459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 946a30f8f8cSSatish Balay } 9479566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9489566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9499566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 950a30f8f8cSSatish Balay 951a30f8f8cSSatish Balay /* copy over the A part */ 95265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9539371c9d4SSatish Balay ai = Aloc->i; 9549371c9d4SSatish Balay aj = Aloc->j; 9559371c9d4SSatish Balay a = Aloc->a; 9569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 957a30f8f8cSSatish Balay 958a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 959e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 96026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 961a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 962e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 963a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9649566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 96526fbe8dcSKarl Rupp col++; 96626fbe8dcSKarl Rupp a += bs; 967a30f8f8cSSatish Balay } 968a30f8f8cSSatish Balay } 969a30f8f8cSSatish Balay } 970a30f8f8cSSatish Balay /* copy over the B part */ 97165d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9729371c9d4SSatish Balay ai = Bloc->i; 9739371c9d4SSatish Balay aj = Bloc->j; 9749371c9d4SSatish Balay a = Bloc->a; 975a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 976e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97726fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 978a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 979a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 980a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9819566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 98226fbe8dcSKarl Rupp col++; 98326fbe8dcSKarl Rupp a += bs; 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay } 986a30f8f8cSSatish Balay } 9879566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 990a30f8f8cSSatish Balay /* 991a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 992b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 993a30f8f8cSSatish Balay */ 9949566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 99523a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 996dd400576SPatrick Sanan if (rank == 0) { 997f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname)); 998f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer)); 999a30f8f8cSSatish Balay } 10009566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10019566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1002a30f8f8cSSatish Balay } 10033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1004a30f8f8cSSatish Balay } 1005a30f8f8cSSatish Balay 1006618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1007618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1008d1654148SHong Zhang 100966976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1010d71ae5a4SJacob Faibussowitsch { 1011ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1012a30f8f8cSSatish Balay 1013a30f8f8cSSatish Balay PetscFunctionBegin; 10149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1018d1654148SHong Zhang if (iascii || isdraw || issocket) { 10199566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10201baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay 1024789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1025789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1026d71ae5a4SJacob Faibussowitsch { 1027547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1028eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10296de40e93SBarry Smith PetscScalar *from; 10306de40e93SBarry Smith const PetscScalar *x; 1031547795f9SHong Zhang 1032547795f9SHong Zhang PetscFunctionBegin; 1033547795f9SHong Zhang /* diagonal part */ 10349566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1035629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1036629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1037629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1038547795f9SHong Zhang 1039547795f9SHong Zhang /* subdiagonal part */ 10405f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10419566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1042547795f9SHong Zhang 1043547795f9SHong Zhang /* copy x into the vec slvec0 */ 10449566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1046547795f9SHong Zhang 10479566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1050547795f9SHong Zhang 10519566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10529566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1053547795f9SHong Zhang /* supperdiagonal part */ 10549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1056547795f9SHong Zhang } 1057789afff4SPierre Jolivet #endif 1058547795f9SHong Zhang 105966976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1060d71ae5a4SJacob Faibussowitsch { 1061a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1062eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1063d9ca1df4SBarry Smith PetscScalar *from; 1064d9ca1df4SBarry Smith const PetscScalar *x; 1065a9d4b620SHong Zhang 1066a9d4b620SHong Zhang PetscFunctionBegin; 1067a9d4b620SHong Zhang /* diagonal part */ 10689566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1069629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1070629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1071629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1072a9d4b620SHong Zhang 1073a9d4b620SHong Zhang /* subdiagonal part */ 10749566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1075fc165ae2SBarry Smith 1076a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10779566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10789566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1079a9d4b620SHong Zhang 10809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1083fc165ae2SBarry Smith 10849566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1086a9d4b620SHong Zhang /* supperdiagonal part */ 10879566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1089a9d4b620SHong Zhang } 1090a9d4b620SHong Zhang 109166976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 109266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1093d71ae5a4SJacob Faibussowitsch { 1094eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1095eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1096629a200eSBarry Smith PetscScalar *from; 1097eb1ec7c1SStefano Zampini const PetscScalar *x; 1098eb1ec7c1SStefano Zampini 1099eb1ec7c1SStefano Zampini PetscFunctionBegin; 1100eb1ec7c1SStefano Zampini /* diagonal part */ 11019566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1102629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1103629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1104eb1ec7c1SStefano Zampini 1105eb1ec7c1SStefano Zampini /* subdiagonal part */ 11065f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11079566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1108eb1ec7c1SStefano Zampini 1109eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11109566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11119566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11129566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1114eb1ec7c1SStefano Zampini 11159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11179566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1118eb1ec7c1SStefano Zampini 1119eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11209566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1122eb1ec7c1SStefano Zampini } 112366976f2fSJacob Faibussowitsch #endif 1124eb1ec7c1SStefano Zampini 112566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1126d71ae5a4SJacob Faibussowitsch { 1127de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1128d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1129629a200eSBarry Smith PetscScalar *from; 1130d9ca1df4SBarry Smith const PetscScalar *x; 1131a9d4b620SHong Zhang 1132a9d4b620SHong Zhang PetscFunctionBegin; 1133a9d4b620SHong Zhang /* diagonal part */ 11349566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1135629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1136629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1137a9d4b620SHong Zhang 1138a9d4b620SHong Zhang /* subdiagonal part */ 11399566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1140a9d4b620SHong Zhang 1141a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11429566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11439566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1146a9d4b620SHong Zhang 11479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11499566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1150a9d4b620SHong Zhang 1151a9d4b620SHong Zhang /* supperdiagonal part */ 11529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1154a9d4b620SHong Zhang } 1155a9d4b620SHong Zhang 1156a30f8f8cSSatish Balay /* 1157a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1158a30f8f8cSSatish Balay diagonal block 1159a30f8f8cSSatish Balay */ 116066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1161d71ae5a4SJacob Faibussowitsch { 1162a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1163a30f8f8cSSatish Balay 1164a30f8f8cSSatish Balay PetscFunctionBegin; 116508401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11669566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1168a30f8f8cSSatish Balay } 1169a30f8f8cSSatish Balay 117066976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1171d71ae5a4SJacob Faibussowitsch { 1172a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1173a30f8f8cSSatish Balay 1174a30f8f8cSSatish Balay PetscFunctionBegin; 11759566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11769566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1178a30f8f8cSSatish Balay } 1179a30f8f8cSSatish Balay 118066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1181d71ae5a4SJacob Faibussowitsch { 1182d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1183d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1184d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1185d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1186899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1187d0d4cfc2SHong Zhang 1188a30f8f8cSSatish Balay PetscFunctionBegin; 11895f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1190d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1191d0d4cfc2SHong Zhang 1192d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1193d0d4cfc2SHong Zhang /* 1194d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1195d0d4cfc2SHong Zhang */ 1196d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1197d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1198d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1199d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1200d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 120126fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1202d0d4cfc2SHong Zhang } 12039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1204d0d4cfc2SHong Zhang } 1205d0d4cfc2SHong Zhang 12065f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1207d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1208d0d4cfc2SHong Zhang 12099371c9d4SSatish Balay pvA = &vworkA; 12109371c9d4SSatish Balay pcA = &cworkA; 12119371c9d4SSatish Balay pvB = &vworkB; 12129371c9d4SSatish Balay pcB = &cworkB; 12139371c9d4SSatish Balay if (!v) { 12149371c9d4SSatish Balay pvA = NULL; 12159371c9d4SSatish Balay pvB = NULL; 12169371c9d4SSatish Balay } 12179371c9d4SSatish Balay if (!idx) { 12189371c9d4SSatish Balay pcA = NULL; 12199371c9d4SSatish Balay if (!v) pcB = NULL; 12209371c9d4SSatish Balay } 12219566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12229566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1223d0d4cfc2SHong Zhang nztot = nzA + nzB; 1224d0d4cfc2SHong Zhang 1225d0d4cfc2SHong Zhang cmap = mat->garray; 1226d0d4cfc2SHong Zhang if (v || idx) { 1227d0d4cfc2SHong Zhang if (nztot) { 1228d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1229d0d4cfc2SHong Zhang PetscInt imark = -1; 1230d0d4cfc2SHong Zhang if (v) { 1231d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1232d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1233d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1234d0d4cfc2SHong Zhang else break; 1235d0d4cfc2SHong Zhang } 1236d0d4cfc2SHong Zhang imark = i; 1237d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1238d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1239d0d4cfc2SHong Zhang } 1240d0d4cfc2SHong Zhang if (idx) { 1241d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1242d0d4cfc2SHong Zhang if (imark > -1) { 1243ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1244d0d4cfc2SHong Zhang } else { 1245d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 124626fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1247d0d4cfc2SHong Zhang else break; 1248d0d4cfc2SHong Zhang } 1249d0d4cfc2SHong Zhang imark = i; 1250d0d4cfc2SHong Zhang } 1251d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1252d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1253d0d4cfc2SHong Zhang } 1254d0d4cfc2SHong Zhang } else { 1255f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1256f4259b30SLisandro Dalcin if (v) *v = NULL; 1257d0d4cfc2SHong Zhang } 1258d0d4cfc2SHong Zhang } 1259d0d4cfc2SHong Zhang *nz = nztot; 12609566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12619566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 126566976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1266d71ae5a4SJacob Faibussowitsch { 1267a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1268a30f8f8cSSatish Balay 1269a30f8f8cSSatish Balay PetscFunctionBegin; 12705f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1271a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1273a30f8f8cSSatish Balay } 1274a30f8f8cSSatish Balay 127566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1276d71ae5a4SJacob Faibussowitsch { 1277d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1278d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1279d0d4cfc2SHong Zhang 1280d0d4cfc2SHong Zhang PetscFunctionBegin; 1281d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1283d0d4cfc2SHong Zhang } 128466976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1285d71ae5a4SJacob Faibussowitsch { 1286d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1287d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1288d0d4cfc2SHong Zhang 1289d0d4cfc2SHong Zhang PetscFunctionBegin; 1290d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 12913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1292d0d4cfc2SHong Zhang } 1293d0d4cfc2SHong Zhang 129466976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1295d71ae5a4SJacob Faibussowitsch { 12965f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12975f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 12982726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 12992726fb6dSPierre Jolivet 13009566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13019566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13025f80ce2aSJacob Faibussowitsch } 13033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13042726fb6dSPierre Jolivet } 13052726fb6dSPierre Jolivet 130666976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1307d71ae5a4SJacob Faibussowitsch { 130899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 130999cafbc1SBarry Smith 131099cafbc1SBarry Smith PetscFunctionBegin; 13119566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13129566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131499cafbc1SBarry Smith } 131599cafbc1SBarry Smith 131666976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1317d71ae5a4SJacob Faibussowitsch { 131899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 131999cafbc1SBarry Smith 132099cafbc1SBarry Smith PetscFunctionBegin; 13219566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13229566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132499cafbc1SBarry Smith } 132599cafbc1SBarry Smith 13267dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 132736032a97SHong Zhang Input: isrow - distributed(parallel), 132836032a97SHong Zhang iscol_local - locally owned (seq) 132936032a97SHong Zhang */ 133066976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1331d71ae5a4SJacob Faibussowitsch { 13328f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13338f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 133436032a97SHong Zhang 133536032a97SHong Zhang PetscFunctionBegin; 133666976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 133966976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13408f46ffcaSHong Zhang 13419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13429566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13438f46ffcaSHong Zhang 13449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13479566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13489566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13499566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13508f46ffcaSHong Zhang 13518f46ffcaSHong Zhang nmatch = 0; 13528f46ffcaSHong Zhang k = 0; 13538f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13548f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13558f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13569371c9d4SSatish Balay k = j; 13579371c9d4SSatish Balay nmatch++; 13588f46ffcaSHong Zhang break; 13598f46ffcaSHong Zhang } 13608f46ffcaSHong Zhang } 13618f46ffcaSHong Zhang } 13629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13639566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13649566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13659566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13661098a8e8SHong Zhang if (nmatch < sz1) { 13671098a8e8SHong Zhang *flg = PETSC_FALSE; 13681098a8e8SHong Zhang } else { 13691098a8e8SHong Zhang *flg = PETSC_TRUE; 13701098a8e8SHong Zhang } 13713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13728f46ffcaSHong Zhang } 137336032a97SHong Zhang 137466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1375d71ae5a4SJacob Faibussowitsch { 1376fdfbdca6SPierre Jolivet Mat C[2]; 1377fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1378fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1379fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 138036032a97SHong Zhang 138136032a97SHong Zhang PetscFunctionBegin; 13829566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1383fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 138436032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13865f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 138736032a97SHong Zhang } else { 13889566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13899566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1390fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 13918f46ffcaSHong Zhang } 1392fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1393fdfbdca6SPierre Jolivet if (!isequal) { 1394fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1395fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1396fdfbdca6SPierre Jolivet if (!isidentity) { 1397fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1398fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1399fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1400fdfbdca6SPierre Jolivet } else { 1401fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1402fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1403fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1404fdfbdca6SPierre Jolivet } 1405fdfbdca6SPierre Jolivet } 1406fdfbdca6SPierre Jolivet } 14077dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1408fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1409fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14108f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1411fdfbdca6SPierre Jolivet IS intersect; 1412fdfbdca6SPierre Jolivet PetscInt ni; 1413fdfbdca6SPierre Jolivet 1414fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1415fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1416fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1417fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1418fdfbdca6SPierre Jolivet } 1419fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1420fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1421fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1422fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1423fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1424fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1425fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1426fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1427fdfbdca6SPierre Jolivet } 1428fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1429fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1430fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1431fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1432fdfbdca6SPierre Jolivet } 14339566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14358f46ffcaSHong Zhang } 14363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14378f46ffcaSHong Zhang } 14388f46ffcaSHong Zhang 143966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1440d71ae5a4SJacob Faibussowitsch { 1441a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1442a30f8f8cSSatish Balay 1443a30f8f8cSSatish Balay PetscFunctionBegin; 14449566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14459566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1447a30f8f8cSSatish Balay } 1448a30f8f8cSSatish Balay 144966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1450d71ae5a4SJacob Faibussowitsch { 1451a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1452a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14533966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1454a30f8f8cSSatish Balay 1455a30f8f8cSSatish Balay PetscFunctionBegin; 1456d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 145726fbe8dcSKarl Rupp 14589566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 145926fbe8dcSKarl Rupp 14609371c9d4SSatish Balay isend[0] = info->nz_used; 14619371c9d4SSatish Balay isend[1] = info->nz_allocated; 14629371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14639371c9d4SSatish Balay isend[3] = info->memory; 14649371c9d4SSatish Balay isend[4] = info->mallocs; 146526fbe8dcSKarl Rupp 14669566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 146726fbe8dcSKarl Rupp 14689371c9d4SSatish Balay isend[0] += info->nz_used; 14699371c9d4SSatish Balay isend[1] += info->nz_allocated; 14709371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14719371c9d4SSatish Balay isend[3] += info->memory; 14729371c9d4SSatish Balay isend[4] += info->mallocs; 1473a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1474a30f8f8cSSatish Balay info->nz_used = isend[0]; 1475a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1476a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1477a30f8f8cSSatish Balay info->memory = isend[3]; 1478a30f8f8cSSatish Balay info->mallocs = isend[4]; 1479a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1480462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 148126fbe8dcSKarl Rupp 1482a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1483a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1484a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1485a30f8f8cSSatish Balay info->memory = irecv[3]; 1486a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1487a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1488462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 148926fbe8dcSKarl Rupp 1490a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1491a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1492a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1493a30f8f8cSSatish Balay info->memory = irecv[3]; 1494a30f8f8cSSatish Balay info->mallocs = irecv[4]; 149598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1496a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1497a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1498a30f8f8cSSatish Balay info->factor_mallocs = 0; 14993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1500a30f8f8cSSatish Balay } 1501a30f8f8cSSatish Balay 150266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1503d71ae5a4SJacob Faibussowitsch { 1504a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1505d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1506a30f8f8cSSatish Balay 1507a30f8f8cSSatish Balay PetscFunctionBegin; 1508e98b92d7SKris Buschelman switch (op) { 1509512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1510e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 151128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1512a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1513c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1514e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 151543674050SBarry Smith MatCheckPreallocated(A, 1); 15169566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15179566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1518e98b92d7SKris Buschelman break; 1519e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 152043674050SBarry Smith MatCheckPreallocated(A, 1); 15214e0d8c25SBarry Smith a->roworiented = flg; 152226fbe8dcSKarl Rupp 15239566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15249566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1525e98b92d7SKris Buschelman break; 15268c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1527d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1528d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1529d71ae5a4SJacob Faibussowitsch break; 1530d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1531d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1532d71ae5a4SJacob Faibussowitsch break; 1533d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1534d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1535d71ae5a4SJacob Faibussowitsch break; 1536d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 1537d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1538d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15390f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1540eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1541547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1542eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1543eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1544eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1545b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1546eb1ec7c1SStefano Zampini } 15470f2140c7SStefano Zampini #endif 1548eeffb40dSHong Zhang break; 1549ffa07934SHong Zhang case MAT_SPD: 1550d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 1551d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1552d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1553eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1554eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1555eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1556eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1557eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1558eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1559eb1ec7c1SStefano Zampini } 1560eb1ec7c1SStefano Zampini #endif 1561eeffb40dSHong Zhang break; 156277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 156343674050SBarry Smith MatCheckPreallocated(A, 1); 15649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1565eeffb40dSHong Zhang break; 15669a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1567b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15685f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 15699566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 157077e54ba9SKris Buschelman break; 1571d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 1572d71ae5a4SJacob Faibussowitsch break; 1573d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1574d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1575d71ae5a4SJacob Faibussowitsch break; 1576d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1577d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1578d71ae5a4SJacob Faibussowitsch break; 1579d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1580d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1581d71ae5a4SJacob Faibussowitsch break; 1582d71ae5a4SJacob Faibussowitsch default: 1583d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1584a30f8f8cSSatish Balay } 15853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1586a30f8f8cSSatish Balay } 1587a30f8f8cSSatish Balay 158866976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1589d71ae5a4SJacob Faibussowitsch { 1590a30f8f8cSSatish Balay PetscFunctionBegin; 15917fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1592cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15939566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1594cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15959566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1596fc4dec0aSBarry Smith } 15973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1598a30f8f8cSSatish Balay } 1599a30f8f8cSSatish Balay 160066976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1601d71ae5a4SJacob Faibussowitsch { 1602a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1603a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 16045e90f9d9SHong Zhang PetscInt nv, m, n; 1605ace3abfcSBarry Smith PetscBool flg; 1606a30f8f8cSSatish Balay 1607a30f8f8cSSatish Balay PetscFunctionBegin; 1608a30f8f8cSSatish Balay if (ll != rr) { 16099566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 16105f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1611a30f8f8cSSatish Balay } 16123ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1613b3bf805bSHong Zhang 16149566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 16155f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1616b3bf805bSHong Zhang 16179566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 16185f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 16195e90f9d9SHong Zhang 16209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16215e90f9d9SHong Zhang 16225e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1623dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16245e90f9d9SHong Zhang 16255e90f9d9SHong Zhang /* scale the diagonal part */ 1626dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1627a30f8f8cSSatish Balay 16285e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1630dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1632a30f8f8cSSatish Balay } 1633a30f8f8cSSatish Balay 163466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1635d71ae5a4SJacob Faibussowitsch { 1636f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1637a30f8f8cSSatish Balay 1638a30f8f8cSSatish Balay PetscFunctionBegin; 16399566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1641a30f8f8cSSatish Balay } 1642a30f8f8cSSatish Balay 16436849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1644a30f8f8cSSatish Balay 164566976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1646d71ae5a4SJacob Faibussowitsch { 1647a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1648a30f8f8cSSatish Balay Mat a, b, c, d; 1649ace3abfcSBarry Smith PetscBool flg; 1650a30f8f8cSSatish Balay 1651a30f8f8cSSatish Balay PetscFunctionBegin; 16529371c9d4SSatish Balay a = matA->A; 16539371c9d4SSatish Balay b = matA->B; 16549371c9d4SSatish Balay c = matB->A; 16559371c9d4SSatish Balay d = matB->B; 1656a30f8f8cSSatish Balay 16579566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 165848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 1659462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1661a30f8f8cSSatish Balay } 1662a30f8f8cSSatish Balay 166366976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1664d71ae5a4SJacob Faibussowitsch { 16654c7a3774SStefano Zampini PetscBool isbaij; 16663c896bc6SHong Zhang 16673c896bc6SHong Zhang PetscFunctionBegin; 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16695f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16703c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16713c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16729566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16739566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16749566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16753c896bc6SHong Zhang } else { 16764c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16774c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16784c7a3774SStefano Zampini 16799566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16809566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16813c896bc6SHong Zhang } 16829566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16843c896bc6SHong Zhang } 16853c896bc6SHong Zhang 168666976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1687d71ae5a4SJacob Faibussowitsch { 16884fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16894fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16904fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16914fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16924fe895cdSHong Zhang 16934fe895cdSHong Zhang PetscFunctionBegin; 16944fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16954fe895cdSHong Zhang PetscScalar alpha = a; 16964fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16974fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16989566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1699792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 17004fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 17014fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 17029566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1703792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1705ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 17069566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 17079566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 17089566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 17094fe895cdSHong Zhang } else { 17104de5dceeSHong Zhang Mat B; 17114de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 17125f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 17139566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 17149566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 17159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 17169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 17179566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 17189566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 17199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 17209566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 17219566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17229566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17239566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17249566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17259566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17269566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17279566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17289566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17299566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17309566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17314fe895cdSHong Zhang } 17323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17334fe895cdSHong Zhang } 17344fe895cdSHong Zhang 173566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1736d71ae5a4SJacob Faibussowitsch { 17371302d50aSBarry Smith PetscInt i; 1738afebec48SHong Zhang PetscBool flg; 1739a5e6ed63SBarry Smith 17406849ba73SBarry Smith PetscFunctionBegin; 17419566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1742a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17439566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 174448a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17454dcd73b1SHong Zhang } 17463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1747a5e6ed63SBarry Smith } 1748a5e6ed63SBarry Smith 174966976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1750d71ae5a4SJacob Faibussowitsch { 17517d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17526f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17537d68702bSBarry Smith 17547d68702bSBarry Smith PetscFunctionBegin; 17556f33a894SBarry Smith if (!Y->preallocated) { 17569566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17576f33a894SBarry Smith } else if (!aij->nz) { 1758b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17599566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1760b83222d8SBarry Smith aij->nonew = nonew; 17617d68702bSBarry Smith } 17629566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17647d68702bSBarry Smith } 17657d68702bSBarry Smith 176666976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1767d71ae5a4SJacob Faibussowitsch { 17683b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17693b49f96aSBarry Smith 17703b49f96aSBarry Smith PetscFunctionBegin; 17715f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17729566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17733b49f96aSBarry Smith if (d) { 17743b49f96aSBarry Smith PetscInt rstart; 17759566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17763b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17773b49f96aSBarry Smith } 17783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17793b49f96aSBarry Smith } 17803b49f96aSBarry Smith 178166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1782d71ae5a4SJacob Faibussowitsch { 1783a5b7ff6bSBarry Smith PetscFunctionBegin; 1784a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1786a5b7ff6bSBarry Smith } 17873b49f96aSBarry Smith 178817ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 178917ea310bSPierre Jolivet { 179017ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 179117ea310bSPierre Jolivet 179217ea310bSPierre Jolivet PetscFunctionBegin; 179317ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 179417ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 179517ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 179617ea310bSPierre Jolivet } 179717ea310bSPierre Jolivet 17986cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer); 1799789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]); 1800789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 18016cff0a6bSPierre Jolivet 18023964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1803a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1804a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1805a9d4b620SHong Zhang MatMult_MPISBAIJ, 180697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1807431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1808431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin /* 10*/ NULL, 1813f4259b30SLisandro Dalcin NULL, 1814f4259b30SLisandro Dalcin NULL, 181541f059aeSBarry Smith MatSOR_MPISBAIJ, 1816a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 181797304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1818a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1819a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1820a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1821a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 182297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1823a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1824a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1825a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1826f4259b30SLisandro Dalcin /* 24*/ NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin NULL, 183126cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1835f4259b30SLisandro Dalcin NULL, 1836d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18427dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1843d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1844a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18453c896bc6SHong Zhang MatCopy_MPISBAIJ, 1846f4259b30SLisandro Dalcin /* 44*/ NULL, 1847a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18487d68702bSBarry Smith MatShift_MPISBAIJ, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin /* 49*/ NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin /* 54*/ NULL, 1857f4259b30SLisandro Dalcin NULL, 1858a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1859f4259b30SLisandro Dalcin NULL, 1860a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18617dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin /* 64*/ NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1872f4259b30SLisandro Dalcin NULL, 187328d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin /* 74*/ NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin /* 79*/ NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 1884f4259b30SLisandro Dalcin NULL, 18855bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1886f4259b30SLisandro Dalcin /* 84*/ NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin /* 89*/ NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin /* 94*/ NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin /* 99*/ NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin NULL, 19042726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin /*104*/ NULL, 190799cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1908d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1909d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 191095936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1911f4259b30SLisandro Dalcin /*109*/ NULL, 1912f4259b30SLisandro Dalcin NULL, 1913f4259b30SLisandro Dalcin NULL, 1914f4259b30SLisandro Dalcin NULL, 19153b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1916f4259b30SLisandro Dalcin /*114*/ NULL, 1917f4259b30SLisandro Dalcin NULL, 1918f4259b30SLisandro Dalcin NULL, 1919f4259b30SLisandro Dalcin NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin /*119*/ NULL, 1922f4259b30SLisandro Dalcin NULL, 1923f4259b30SLisandro Dalcin NULL, 1924f4259b30SLisandro Dalcin NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin /*124*/ NULL, 1927f4259b30SLisandro Dalcin NULL, 1928f4259b30SLisandro Dalcin NULL, 1929f4259b30SLisandro Dalcin NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin /*129*/ NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin NULL, 1934f4259b30SLisandro Dalcin NULL, 1935f4259b30SLisandro Dalcin NULL, 1936f4259b30SLisandro Dalcin /*134*/ NULL, 1937f4259b30SLisandro Dalcin NULL, 1938f4259b30SLisandro Dalcin NULL, 1939f4259b30SLisandro Dalcin NULL, 1940f4259b30SLisandro Dalcin NULL, 194146533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1942f4259b30SLisandro Dalcin NULL, 1943f4259b30SLisandro Dalcin NULL, 1944f4259b30SLisandro Dalcin NULL, 1945f4259b30SLisandro Dalcin NULL, 1946d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1947d70f29a3SPierre Jolivet NULL, 1948d70f29a3SPierre Jolivet NULL, 194999a7f59eSMark Adams NULL, 195099a7f59eSMark Adams NULL, 19517fb60732SBarry Smith NULL, 1952dec0b466SHong Zhang /*150*/ NULL, 1953eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 19544cc2b5b5SPierre Jolivet NULL, 195542ce410bSJunchao Zhang NULL, 195642ce410bSJunchao Zhang NULL, 1957fe1fc275SAlexander /*155*/ NULL, 1958fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 1959a30f8f8cSSatish Balay 196066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1961d71ae5a4SJacob Faibussowitsch { 1962476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1963535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19645d2a9ed1SStefano Zampini PetscMPIInt size; 1965a23d5eceSKris Buschelman 1966a23d5eceSKris Buschelman PetscFunctionBegin; 1967ad79cf63SBarry Smith if (B->hash_active) { 1968aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1969ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1970ad79cf63SBarry Smith } 1971ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 19729566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 19739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19759566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19765f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19775f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1978899cda47SBarry Smith 1979d0f46423SBarry Smith mbs = B->rmap->n / bs; 1980d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19815f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1982a23d5eceSKris Buschelman 1983d0f46423SBarry Smith B->rmap->bs = bs; 1984a23d5eceSKris Buschelman b->bs2 = bs * bs; 1985a23d5eceSKris Buschelman b->mbs = mbs; 1986a23d5eceSKris Buschelman b->Mbs = Mbs; 1987de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1988de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1989a23d5eceSKris Buschelman 1990ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1991d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1992d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1993a23d5eceSKris Buschelman 1994d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1995d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1996a23d5eceSKris Buschelman 1997cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1998eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 1999cb7b82ddSBarry Smith #else 20009566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2001cb7b82ddSBarry Smith #endif 20029566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 20039566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 20049566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 20059566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 20069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 20079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 20089566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 20099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 20109566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 2011cb7b82ddSBarry Smith 20129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2013c508b908SBarry Smith 2014c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 20159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 20169566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 20179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 20189566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2019c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2020cb7b82ddSBarry Smith 2021c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2022ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 20239566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 20249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 20259566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 2026c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2027a23d5eceSKris Buschelman 20289566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 20299566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 203026fbe8dcSKarl Rupp 2031526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2032cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2033cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 20343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2035a23d5eceSKris Buschelman } 2036a23d5eceSKris Buschelman 203766976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2038d71ae5a4SJacob Faibussowitsch { 203902106b30SBarry Smith PetscInt m, rstart, cend; 2040f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2041f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2042f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2043bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20443bd0feecSPierre Jolivet PetscBool nooffprocentries; 2045dfb205c3SBarry Smith 2046dfb205c3SBarry Smith PetscFunctionBegin; 20475f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20509566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20519566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20529566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2053dfb205c3SBarry Smith m = B->rmap->n / bs; 2054dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2055dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2056dfb205c3SBarry Smith 20575f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20589566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2059dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2060dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20615f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20624cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2063dfb205c3SBarry Smith JJ = jj + ii[i]; 20640cd7f59aSBarry Smith bd = 0; 2065dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20660cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2067dfb205c3SBarry Smith JJ++; 20680cd7f59aSBarry Smith bd++; 2069dfb205c3SBarry Smith } 2070dfb205c3SBarry Smith d = 0; 2071dfb205c3SBarry Smith for (; j < nz; j++) { 2072dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2073dfb205c3SBarry Smith d++; 2074dfb205c3SBarry Smith } 2075dfb205c3SBarry Smith d_nnz[i] = d; 20760cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20770cd7f59aSBarry Smith nz = nz - bd; 20780cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2079dfb205c3SBarry Smith } 20809566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20819566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20829566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2083dfb205c3SBarry Smith 2084dfb205c3SBarry Smith values = (PetscScalar *)V; 208548a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2086dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2087dfb205c3SBarry Smith PetscInt row = i + rstart; 2088dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2089dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2090bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2091dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20929566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2093bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2094bb80cfbbSStefano Zampini PetscInt j; 20950cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20960cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20979566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20980cd7f59aSBarry Smith } 20990cd7f59aSBarry Smith } 2100dfb205c3SBarry Smith } 2101dfb205c3SBarry Smith 21029566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 21033bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 21043bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 21059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21073bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 21083bd0feecSPierre Jolivet 21099566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 21103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2111dfb205c3SBarry Smith } 2112dfb205c3SBarry Smith 21130bad9183SKris Buschelman /*MC 2114fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2115828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2116828413b8SBarry Smith the matrix is stored. 2117828413b8SBarry Smith 2118828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 211911a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 21200bad9183SKris Buschelman 21212ef1f0ffSBarry Smith Options Database Key: 212211a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 21230bad9183SKris Buschelman 21242ef1f0ffSBarry Smith Level: beginner 21252ef1f0ffSBarry Smith 212611a5261eSBarry Smith Note: 2127476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2128476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2129476417e5SBarry Smith 21301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 21310bad9183SKris Buschelman M*/ 21320bad9183SKris Buschelman 2133d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2134d71ae5a4SJacob Faibussowitsch { 2135b5df2d14SHong Zhang Mat_MPISBAIJ *b; 213694ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2137b5df2d14SHong Zhang 2138b5df2d14SHong Zhang PetscFunctionBegin; 21394dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2140b0a32e0cSBarry Smith B->data = (void *)b; 2141aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2142b5df2d14SHong Zhang 2143b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2144b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2145b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2146b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 214726fbe8dcSKarl Rupp 21489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2150b5df2d14SHong Zhang 2151b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2153b5df2d14SHong Zhang 2154b5df2d14SHong Zhang /* build cache for off array entries formed */ 21559566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 215626fbe8dcSKarl Rupp 2157b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21580298fd71SBarry Smith b->colmap = NULL; 21590298fd71SBarry Smith b->garray = NULL; 2160b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2161b5df2d14SHong Zhang 2162b5df2d14SHong Zhang /* stuff used in block assembly */ 2163f4259b30SLisandro Dalcin b->barray = NULL; 2164b5df2d14SHong Zhang 2165b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2166f4259b30SLisandro Dalcin b->lvec = NULL; 2167f4259b30SLisandro Dalcin b->Mvctx = NULL; 2168f4259b30SLisandro Dalcin b->slvec0 = NULL; 2169f4259b30SLisandro Dalcin b->slvec0b = NULL; 2170f4259b30SLisandro Dalcin b->slvec1 = NULL; 2171f4259b30SLisandro Dalcin b->slvec1a = NULL; 2172f4259b30SLisandro Dalcin b->slvec1b = NULL; 2173f4259b30SLisandro Dalcin b->sMvctx = NULL; 2174b5df2d14SHong Zhang 2175b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2176f4259b30SLisandro Dalcin b->rowindices = NULL; 2177f4259b30SLisandro Dalcin b->rowvalues = NULL; 2178b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2179b5df2d14SHong Zhang 2180b5df2d14SHong Zhang /* hash table stuff */ 2181f4259b30SLisandro Dalcin b->ht = NULL; 2182f4259b30SLisandro Dalcin b->hd = NULL; 2183b5df2d14SHong Zhang b->ht_size = 0; 2184b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2185b5df2d14SHong Zhang b->ht_fact = 0; 2186b5df2d14SHong Zhang b->ht_total_ct = 0; 2187b5df2d14SHong Zhang b->ht_insert_ct = 0; 2188b5df2d14SHong Zhang 21897dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21907a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21917a868f3eSHong Zhang 2192f4259b30SLisandro Dalcin b->in_loc = NULL; 2193f4259b30SLisandro Dalcin b->v_loc = NULL; 219459ffdab8SBarry Smith b->n_loc = 0; 219594ae4db5SBarry Smith 21969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 22006214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 22019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 22026214f412SHong Zhang #endif 2203d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 22049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2205d24d4204SJose E. Roman #endif 22069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 22079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2208aa5a9175SDahai Guo 2209b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2210b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2211b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2212b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2213eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2214b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2215eb1ec7c1SStefano Zampini #else 2216b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2217eb1ec7c1SStefano Zampini #endif 221813647f61SHong Zhang 22199566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2220d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 22219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 222294ae4db5SBarry Smith if (flg) { 222394ae4db5SBarry Smith PetscReal fact = 1.39; 22249566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 22259566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 222694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 22279566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 22289566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 222994ae4db5SBarry Smith } 2230d0609cedSBarry Smith PetscOptionsEnd(); 22313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2232b5df2d14SHong Zhang } 2233b5df2d14SHong Zhang 22342920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2235209238afSKris Buschelman /*MC 2236002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2237209238afSKris Buschelman 223811a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 223911a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2240209238afSKris Buschelman 224111a5261eSBarry Smith Options Database Key: 2242c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2243209238afSKris Buschelman 2244209238afSKris Buschelman Level: beginner 2245209238afSKris Buschelman 22461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2247209238afSKris Buschelman M*/ 2248209238afSKris Buschelman 22495d83a8b1SBarry Smith /*@ 2250b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2251b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2252b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2253b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2254b5df2d14SHong Zhang 2255c3339decSBarry Smith Collective 2256b5df2d14SHong Zhang 2257b5df2d14SHong Zhang Input Parameters: 22581c4f3114SJed Brown + B - the matrix 2259bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2260bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2261b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2262b5df2d14SHong Zhang submatrix (same for all local rows) 2263b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22646d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22652ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 226695742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2267b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2268b5df2d14SHong Zhang submatrix (same for all local rows). 2269b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2270c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22712ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2272b5df2d14SHong Zhang 2273b5df2d14SHong Zhang Options Database Keys: 2274a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2275b5df2d14SHong Zhang block calculations (much slower) 2276a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2277b5df2d14SHong Zhang 22782ef1f0ffSBarry Smith Level: intermediate 22792ef1f0ffSBarry Smith 2280b5df2d14SHong Zhang Notes: 2281b5df2d14SHong Zhang 228211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2283b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2284b5df2d14SHong Zhang 228549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 228649a6f317SBarry Smith 2287b5df2d14SHong Zhang Storage Information: 2288b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2289b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2290b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2291b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2292b5df2d14SHong Zhang 2293b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22942ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22952ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2296b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22972ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2298b5df2d14SHong Zhang 229911a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2300aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 23012ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2302aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2303aa95bbe8SBarry Smith 2304b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2305b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2306b5df2d14SHong Zhang 2307b5df2d14SHong Zhang .vb 2308b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2309a4b1a0f6SJed Brown -------------------------- 2310c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2311c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2312c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2313a4b1a0f6SJed Brown -------------------------- 2314b5df2d14SHong Zhang .ve 2315b5df2d14SHong Zhang 2316b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2317b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23186d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 231911a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2320b5df2d14SHong Zhang 23212ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23226d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23232ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2324c2fc9fa9SBarry Smith 2325b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 23262ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2327b5df2d14SHong Zhang 23281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2329b5df2d14SHong Zhang @*/ 2330d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2331d71ae5a4SJacob Faibussowitsch { 2332b5df2d14SHong Zhang PetscFunctionBegin; 23336ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23346ba663aaSJed Brown PetscValidType(B, 1); 23356ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2336cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 23373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2338b5df2d14SHong Zhang } 2339b5df2d14SHong Zhang 23402920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 23415d83a8b1SBarry Smith /*@ 234211a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2343a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2344a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 234520f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2346a30f8f8cSSatish Balay 2347d083f849SBarry Smith Collective 2348a30f8f8cSSatish Balay 2349a30f8f8cSSatish Balay Input Parameters: 2350a30f8f8cSSatish Balay + comm - MPI communicator 235111a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 235220f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 235320f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2354a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2355a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 235620f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2357a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2358a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 235920f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 236020f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2361a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2362a30f8f8cSSatish Balay submatrix (same for all local rows) 2363a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23646d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23652ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 236695742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 236795742e49SBarry Smith set its value even if it is zero. 2368a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2369a30f8f8cSSatish Balay submatrix (same for all local rows). 2370a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2371a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23722ef1f0ffSBarry Smith each block row) or `NULL`. 2373a30f8f8cSSatish Balay 2374a30f8f8cSSatish Balay Output Parameter: 2375a30f8f8cSSatish Balay . A - the matrix 2376a30f8f8cSSatish Balay 2377a30f8f8cSSatish Balay Options Database Keys: 2378a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2379a30f8f8cSSatish Balay block calculations (much slower) 2380a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2381a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2382a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2383a30f8f8cSSatish Balay 23842ef1f0ffSBarry Smith Level: intermediate 23852ef1f0ffSBarry Smith 23862ef1f0ffSBarry Smith Notes: 238777433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2388f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 238911a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2390175b88e8SBarry Smith 2391d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23926d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2393d1be2dadSMatthew Knepley 2394a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2395a30f8f8cSSatish Balay (possibly both). 2396a30f8f8cSSatish Balay 239711a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2398a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2399a30f8f8cSSatish Balay 2400727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by 2401727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 2402727bdf9bSBarry Smith 240349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 240449a6f317SBarry Smith 2405a30f8f8cSSatish Balay Storage Information: 2406a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2407a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2408a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2409a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2410a30f8f8cSSatish Balay 2411a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 24122ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 24132ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2414a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 24152ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2416a30f8f8cSSatish Balay 2417a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2418a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2419a30f8f8cSSatish Balay 2420a30f8f8cSSatish Balay .vb 2421a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2422a4b1a0f6SJed Brown -------------------------- 2423c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2424c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2425c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2426a4b1a0f6SJed Brown -------------------------- 2427a30f8f8cSSatish Balay .ve 2428a30f8f8cSSatish Balay 2429a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2430a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24316d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24322ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2433a30f8f8cSSatish Balay 24342ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 24356d10fdaeSSatish Balay plus the diagonal part of the d matrix, 24362ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2437a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 24382ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2439a30f8f8cSSatish Balay 2440727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, 2441727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 2442a30f8f8cSSatish Balay @*/ 2443d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2444d71ae5a4SJacob Faibussowitsch { 24451302d50aSBarry Smith PetscMPIInt size; 2446a30f8f8cSSatish Balay 2447a30f8f8cSSatish Balay PetscFunctionBegin; 24489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2451273d9f13SBarry Smith if (size > 1) { 24529566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24539566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2454273d9f13SBarry Smith } else { 24559566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24569566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2457273d9f13SBarry Smith } 24583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2459a30f8f8cSSatish Balay } 2460a30f8f8cSSatish Balay 2461d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2462d71ae5a4SJacob Faibussowitsch { 2463a30f8f8cSSatish Balay Mat mat; 2464a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2465d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2466387bc808SHong Zhang PetscScalar *array; 2467a30f8f8cSSatish Balay 2468a30f8f8cSSatish Balay PetscFunctionBegin; 2469f4259b30SLisandro Dalcin *newmat = NULL; 247026fbe8dcSKarl Rupp 24719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24739566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24749566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24759566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2476e1b6402fSHong Zhang 2477420957c1SBarry Smith if (matin->hash_active) { 2478420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2479420957c1SBarry Smith } else { 2480d5f3da31SBarry Smith mat->factortype = matin->factortype; 2481273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 248282327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24837fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24847fff6886SHong Zhang 2485b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2486a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2487a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2488a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2489a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2490a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2491a30f8f8cSSatish Balay 2492a30f8f8cSSatish Balay a->size = oldmat->size; 2493a30f8f8cSSatish Balay a->rank = oldmat->rank; 2494a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2495a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2496f4259b30SLisandro Dalcin a->rowindices = NULL; 2497f4259b30SLisandro Dalcin a->rowvalues = NULL; 2498a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2499f4259b30SLisandro Dalcin a->barray = NULL; 2500899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2501899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2502899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2503899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2504a30f8f8cSSatish Balay 2505a30f8f8cSSatish Balay /* hash table stuff */ 2506f4259b30SLisandro Dalcin a->ht = NULL; 2507f4259b30SLisandro Dalcin a->hd = NULL; 2508a30f8f8cSSatish Balay a->ht_size = 0; 2509a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2510a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2511a30f8f8cSSatish Balay a->ht_total_ct = 0; 2512a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2513a30f8f8cSSatish Balay 25149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2515a30f8f8cSSatish Balay if (oldmat->colmap) { 2516a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2517eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2518a30f8f8cSSatish Balay #else 25199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 25209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2521a30f8f8cSSatish Balay #endif 2522f4259b30SLisandro Dalcin } else a->colmap = NULL; 2523387bc808SHong Zhang 2524f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 25259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 25269566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2527f4259b30SLisandro Dalcin } else a->garray = NULL; 2528a30f8f8cSSatish Balay 25299566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 25309566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 25319566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 253282327fa8SHong Zhang 25339566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 25349566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2535387bc808SHong Zhang 25369566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 25379566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 25389566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 25399566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 25409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 25419566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 25429566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 25439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2544387bc808SHong Zhang 2545387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25469566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2547387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 254882327fa8SHong Zhang 25499566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25509566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2551420957c1SBarry Smith } 25529566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2553a30f8f8cSSatish Balay *newmat = mat; 25543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2555a30f8f8cSSatish Balay } 2556a30f8f8cSSatish Balay 2557618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2558618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2559618cc2edSLisandro Dalcin 25606cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2561d71ae5a4SJacob Faibussowitsch { 25627f489da9SVaclav Hapla PetscBool isbinary; 256395936485SShri Abhyankar 256495936485SShri Abhyankar PetscFunctionBegin; 25659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25665f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25679566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 256995936485SShri Abhyankar } 257095936485SShri Abhyankar 2571789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2572d71ae5a4SJacob Faibussowitsch { 257324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2574f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data; 2575ca54ac64SHong Zhang PetscReal atmp; 257687828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25771302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25781302d50aSBarry Smith PetscMPIInt rank, size; 25796497c311SBarry Smith PetscInt *rowners_bs, count, source; 258087828ca2SBarry Smith PetscScalar *va; 25818a1c53f2SBarry Smith MatScalar *ba; 2582f4c0e9e4SHong Zhang MPI_Status stat; 258324d5174aSHong Zhang 258424d5174aSHong Zhang PetscFunctionBegin; 25855f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25869566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25879566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2588f4c0e9e4SHong Zhang 25899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2591f4c0e9e4SHong Zhang 2592d0f46423SBarry Smith bs = A->rmap->bs; 2593f4c0e9e4SHong Zhang mbs = a->mbs; 2594f4c0e9e4SHong Zhang Mbs = a->Mbs; 2595f4c0e9e4SHong Zhang ba = b->a; 2596f4c0e9e4SHong Zhang bi = b->i; 2597f4c0e9e4SHong Zhang bj = b->j; 2598f4c0e9e4SHong Zhang 2599f4c0e9e4SHong Zhang /* find ownerships */ 2600d0f46423SBarry Smith rowners_bs = A->rmap->range; 2601f4c0e9e4SHong Zhang 2602f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 26039566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2604f4c0e9e4SHong Zhang 2605f4c0e9e4SHong Zhang /* row_max for B */ 2606b8475685SHong Zhang if (rank != size - 1) { 2607f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 26089371c9d4SSatish Balay ncols = bi[1] - bi[0]; 26099371c9d4SSatish Balay bi++; 2610f4c0e9e4SHong Zhang brow = bs * i; 2611f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2612f4c0e9e4SHong Zhang bcol = bs * (*bj); 2613f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2614ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 261504d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2616f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 26179371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 26189371c9d4SSatish Balay ba++; 2619ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2620ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2621f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2622f4c0e9e4SHong Zhang } 2623f4c0e9e4SHong Zhang } 2624f4c0e9e4SHong Zhang bj++; 2625f4c0e9e4SHong Zhang } 2626f4c0e9e4SHong Zhang } 2627f4c0e9e4SHong Zhang 2628f4c0e9e4SHong Zhang /* send values to its owners */ 26296497c311SBarry Smith for (PetscMPIInt dest = rank + 1; dest < size; dest++) { 2630f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2631ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 26326497c311SBarry Smith PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2633ca54ac64SHong Zhang } 2634f4c0e9e4SHong Zhang } 2635f4c0e9e4SHong Zhang 2636f4c0e9e4SHong Zhang /* receive values */ 2637ca54ac64SHong Zhang if (rank) { 2638f4c0e9e4SHong Zhang rvalues = work; 2639ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2640f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 26416497c311SBarry Smith PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2642f4c0e9e4SHong Zhang /* process values */ 2643f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2644ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2645f4c0e9e4SHong Zhang } 2646f4c0e9e4SHong Zhang } 2647ca54ac64SHong Zhang } 2648f4c0e9e4SHong Zhang 26499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26509566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 265224d5174aSHong Zhang } 26532798e883SHong Zhang 2654789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2655d71ae5a4SJacob Faibussowitsch { 26562798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2657d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26583649974fSBarry Smith PetscScalar *x, *ptr, *from; 2659ffe4fb16SHong Zhang Vec bb1; 26603649974fSBarry Smith const PetscScalar *b; 2661ffe4fb16SHong Zhang 2662ffe4fb16SHong Zhang PetscFunctionBegin; 26635f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26645f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2665ffe4fb16SHong Zhang 2666a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2669a2b30743SBarry Smith } 2670a2b30743SBarry Smith 2671ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2672ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26739566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2674ffe4fb16SHong Zhang its--; 2675ffe4fb16SHong Zhang } 2676ffe4fb16SHong Zhang 26779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2678ffe4fb16SHong Zhang while (its--) { 2679ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26809566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2681ffe4fb16SHong Zhang 2682ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26839566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26849566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26869566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2687ffe4fb16SHong Zhang 26889566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2689ffe4fb16SHong Zhang 2690ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26919566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26929566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26939566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26949566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2695ffe4fb16SHong Zhang 2696ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2697629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2698629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2699ffe4fb16SHong Zhang 27009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27029566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2704ffe4fb16SHong Zhang 2705ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 27069566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2707ffe4fb16SHong Zhang 2708ffe4fb16SHong Zhang /* local diagonal sweep */ 27099566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2710ffe4fb16SHong Zhang } 27119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2712fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27139566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2714fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27159566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2716fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2717fa22f6d0SBarry Smith Vec xx1; 2718ace3abfcSBarry Smith PetscBool hasop; 271920f1ed55SBarry Smith const PetscScalar *diag; 2720887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 272120f1ed55SBarry Smith PetscInt i, n; 2722fa22f6d0SBarry Smith 2723fa22f6d0SBarry Smith if (!mat->xx1) { 27249566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 27259566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2726fa22f6d0SBarry Smith } 2727fa22f6d0SBarry Smith xx1 = mat->xx1; 2728fa22f6d0SBarry Smith bb1 = mat->bb1; 2729fa22f6d0SBarry Smith 27309566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2731fa22f6d0SBarry Smith 2732fa22f6d0SBarry Smith if (!mat->diag) { 2733effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27349566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 27359566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2736fa22f6d0SBarry Smith } 27379566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2738fa22f6d0SBarry Smith 2739fa22f6d0SBarry Smith if (hasop) { 27409566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 27419566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 274220f1ed55SBarry Smith } else { 274320f1ed55SBarry Smith /* 274420f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27459566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27469566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 274720f1ed55SBarry Smith */ 27489566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27499566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27509566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27519566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27529566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2753887ee2caSBarry Smith if (omega == 1.0) { 275426fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27559566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2756887ee2caSBarry Smith } else { 275726fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27589566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2759887ee2caSBarry Smith } 27609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 276420f1ed55SBarry Smith } 2765fa22f6d0SBarry Smith 2766fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2767629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2768629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27699566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27709566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27719566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27729566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27739566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27749566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27759566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27769566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27779566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2778fa22f6d0SBarry Smith 2779fa22f6d0SBarry Smith /* local sweep */ 27809566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27819566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2782f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2784ffe4fb16SHong Zhang } 2785ffe4fb16SHong Zhang 2786dfb205c3SBarry Smith /*@ 2787d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2788dfb205c3SBarry Smith 2789d083f849SBarry Smith Collective 2790dfb205c3SBarry Smith 2791dfb205c3SBarry Smith Input Parameters: 2792dfb205c3SBarry Smith + comm - MPI communicator 2793dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 279411a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2795dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2796d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 27972ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27982ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27992ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2800483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2801dfb205c3SBarry Smith . j - column indices 2802dfb205c3SBarry Smith - a - matrix values 2803dfb205c3SBarry Smith 2804dfb205c3SBarry Smith Output Parameter: 2805dfb205c3SBarry Smith . mat - the matrix 2806dfb205c3SBarry Smith 2807dfb205c3SBarry Smith Level: intermediate 2808dfb205c3SBarry Smith 2809dfb205c3SBarry Smith Notes: 28102ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 28112ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 28122ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2813dfb205c3SBarry Smith 28142ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2815dfb205c3SBarry Smith 28161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2817d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2818dfb205c3SBarry Smith @*/ 2819d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2820d71ae5a4SJacob Faibussowitsch { 2821dfb205c3SBarry Smith PetscFunctionBegin; 28225f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 28235f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 28249566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 28259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 28269566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 28279566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 28283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2829dfb205c3SBarry Smith } 2830dfb205c3SBarry Smith 28315d83a8b1SBarry Smith /*@ 283211a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2833dfb205c3SBarry Smith 2834d083f849SBarry Smith Collective 2835dfb205c3SBarry Smith 2836dfb205c3SBarry Smith Input Parameters: 28371c4f3114SJed Brown + B - the matrix 2838dfb205c3SBarry Smith . bs - the block size 2839d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2840d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2841d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2842dfb205c3SBarry Smith 2843664954b6SBarry Smith Level: advanced 2844664954b6SBarry Smith 2845664954b6SBarry Smith Notes: 2846d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2847d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2848d8a51d2aSBarry Smith called this routine. 2849d8a51d2aSBarry Smith 28500cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28510cd7f59aSBarry Smith and usually the numerical values as well 28520cd7f59aSBarry Smith 2853d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2854dfb205c3SBarry Smith 2855d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2856d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2857dfb205c3SBarry Smith @*/ 2858d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2859d71ae5a4SJacob Faibussowitsch { 2860dfb205c3SBarry Smith PetscFunctionBegin; 2861cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2863dfb205c3SBarry Smith } 2864dfb205c3SBarry Smith 2865d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2866d71ae5a4SJacob Faibussowitsch { 286710c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 286810c56fdeSHong Zhang PetscInt *indx; 286910c56fdeSHong Zhang PetscScalar *values; 2870dfb205c3SBarry Smith 28714dcd73b1SHong Zhang PetscFunctionBegin; 28729566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 287310c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 287410c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2875de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 287610c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2877de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28784dcd73b1SHong Zhang 28799566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28809371c9d4SSatish Balay mbs = m / bs; 28819371c9d4SSatish Balay Nbs = N / cbs; 288248a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2883da91a574SPierre Jolivet nbs = n / cbs; 28844dcd73b1SHong Zhang 28859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2886d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2887de25e9cbSPierre Jolivet 28889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2890de25e9cbSPierre Jolivet if (rank == size - 1) { 2891de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28925f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2893de25e9cbSPierre Jolivet } 2894de25e9cbSPierre Jolivet 2895d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28969566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 289710c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28989566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28994dcd73b1SHong Zhang nnz = nnz / bs; 29004dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 29019566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 29029566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 29034dcd73b1SHong Zhang } 29049566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29059566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 29064dcd73b1SHong Zhang 29079566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 29089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 29099566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 29109566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 29119566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 29129566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2913d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 29144dcd73b1SHong Zhang } 29154dcd73b1SHong Zhang 291610c56fdeSHong Zhang /* numeric phase */ 29179566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 29189566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 29194dcd73b1SHong Zhang 29209566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 29214dcd73b1SHong Zhang for (i = 0; i < m; i++) { 29229566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29234dcd73b1SHong Zhang Ii = i + rstart; 29249566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 29259566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29264dcd73b1SHong Zhang } 29279566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 29299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 29303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29314dcd73b1SHong Zhang } 2932