1*e98b92d7SKris Buschelman /*$Id: mpisbaij.c,v 1.53 2001/06/03 02:53:40 bsmith Exp buschelm $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 11a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12a30f8f8cSSatish Balay extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *); 13a30f8f8cSSatish Balay extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15a30f8f8cSSatish Balay extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 16a30f8f8cSSatish Balay extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 18a30f8f8cSSatish Balay extern int MatZeroRows_SeqSBAIJ(Mat,IS,Scalar*); 1900319c27SSatish Balay extern int MatZeroRows_SeqBAIJ(Mat,IS,Scalar *); 20d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 21a30f8f8cSSatish Balay 22a30f8f8cSSatish Balay /* UGLY, ugly, ugly 23a30f8f8cSSatish Balay When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 24a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 25a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 26a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 27a30f8f8cSSatish Balay into the single precision data structures. 28a30f8f8cSSatish Balay */ 29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay #else 36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 41a30f8f8cSSatish Balay #endif 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay EXTERN_C_BEGIN 444a2ae208SSatish Balay #undef __FUNCT__ 454a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 47a30f8f8cSSatish Balay { 48f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 49a30f8f8cSSatish Balay int ierr; 50a30f8f8cSSatish Balay 51a30f8f8cSSatish Balay PetscFunctionBegin; 52a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 54a30f8f8cSSatish Balay PetscFunctionReturn(0); 55a30f8f8cSSatish Balay } 56a30f8f8cSSatish Balay EXTERN_C_END 57a30f8f8cSSatish Balay 58a30f8f8cSSatish Balay EXTERN_C_BEGIN 594a2ae208SSatish Balay #undef __FUNCT__ 604a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 62a30f8f8cSSatish Balay { 63f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 64a30f8f8cSSatish Balay int ierr; 65a30f8f8cSSatish Balay 66a30f8f8cSSatish Balay PetscFunctionBegin; 67a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 69a30f8f8cSSatish Balay PetscFunctionReturn(0); 70a30f8f8cSSatish Balay } 71a30f8f8cSSatish Balay EXTERN_C_END 72a30f8f8cSSatish Balay 73a30f8f8cSSatish Balay /* 74a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 75a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 76a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 77a30f8f8cSSatish Balay length of colmap equals the global matrix length. 78a30f8f8cSSatish Balay */ 794a2ae208SSatish Balay #undef __FUNCT__ 804a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 82a30f8f8cSSatish Balay { 83a30f8f8cSSatish Balay PetscFunctionBegin; 8429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 86a30f8f8cSSatish Balay } 87a30f8f8cSSatish Balay 88a30f8f8cSSatish Balay #define CHUNKSIZE 10 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 91a30f8f8cSSatish Balay { \ 92a30f8f8cSSatish Balay \ 93a30f8f8cSSatish Balay brow = row/bs; \ 94a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 96a30f8f8cSSatish Balay bcol = col/bs; \ 97a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 98a30f8f8cSSatish Balay low = 0; high = nrow; \ 99a30f8f8cSSatish Balay while (high-low > 3) { \ 100a30f8f8cSSatish Balay t = (low+high)/2; \ 101a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 102a30f8f8cSSatish Balay else low = t; \ 103a30f8f8cSSatish Balay } \ 104a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 105a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 106a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 107a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 108a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 109a30f8f8cSSatish Balay else *bap = value; \ 110a30f8f8cSSatish Balay goto a_noinsert; \ 111a30f8f8cSSatish Balay } \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11429bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 115a30f8f8cSSatish Balay if (nrow >= rmax) { \ 116a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 117a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 118a30f8f8cSSatish Balay MatScalar *new_a; \ 119a30f8f8cSSatish Balay \ 12029bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 121a30f8f8cSSatish Balay \ 122a30f8f8cSSatish Balay /* malloc new storage space */ \ 123a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12482502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 126a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 127a30f8f8cSSatish Balay \ 128a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 129a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 130a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 131a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 132a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 135a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 137a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay /* free up old matrix storage */ \ 139a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 143a30f8f8cSSatish Balay } \ 144a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 145a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 146a30f8f8cSSatish Balay \ 147a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 148a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 149b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 150a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 151a30f8f8cSSatish Balay a->reallocs++; \ 152a30f8f8cSSatish Balay a->s_nz++; \ 153a30f8f8cSSatish Balay } \ 154a30f8f8cSSatish Balay N = nrow++ - 1; \ 155a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 156a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 157a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 158a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 159a30f8f8cSSatish Balay } \ 160a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 161a30f8f8cSSatish Balay rp[_i] = bcol; \ 162a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 163a30f8f8cSSatish Balay a_noinsert:; \ 164a30f8f8cSSatish Balay ailen[brow] = nrow; \ 165a30f8f8cSSatish Balay } 166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 167a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 168a30f8f8cSSatish Balay { \ 169a30f8f8cSSatish Balay brow = row/bs; \ 170a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 171a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 172a30f8f8cSSatish Balay bcol = col/bs; \ 173a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 174a30f8f8cSSatish Balay low = 0; high = nrow; \ 175a30f8f8cSSatish Balay while (high-low > 3) { \ 176a30f8f8cSSatish Balay t = (low+high)/2; \ 177a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 178a30f8f8cSSatish Balay else low = t; \ 179a30f8f8cSSatish Balay } \ 180a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 181a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 182a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 183a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 184a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 185a30f8f8cSSatish Balay else *bap = value; \ 186a30f8f8cSSatish Balay goto b_noinsert; \ 187a30f8f8cSSatish Balay } \ 188a30f8f8cSSatish Balay } \ 189a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19029bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 191a30f8f8cSSatish Balay if (nrow >= rmax) { \ 192a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 193a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 194a30f8f8cSSatish Balay MatScalar *new_a; \ 195a30f8f8cSSatish Balay \ 19629bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 197a30f8f8cSSatish Balay \ 198a30f8f8cSSatish Balay /* malloc new storage space */ \ 199a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20082502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 202a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 203a30f8f8cSSatish Balay \ 204a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 205a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 206a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 207a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 208a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 213a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay /* free up old matrix storage */ \ 215a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 219a30f8f8cSSatish Balay } \ 220a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 221a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 222a30f8f8cSSatish Balay \ 223a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 224a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 225b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 226a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 227a30f8f8cSSatish Balay b->reallocs++; \ 228a30f8f8cSSatish Balay b->nz++; \ 229a30f8f8cSSatish Balay } \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 232a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 233a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 234a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 235a30f8f8cSSatish Balay } \ 236a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 237a30f8f8cSSatish Balay rp[_i] = bcol; \ 238a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 239a30f8f8cSSatish Balay b_noinsert:; \ 240a30f8f8cSSatish Balay bilen[brow] = nrow; \ 241a30f8f8cSSatish Balay } 242a30f8f8cSSatish Balay #endif 243a30f8f8cSSatish Balay 244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2454a2ae208SSatish Balay #undef __FUNCT__ 2464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 247a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 248a30f8f8cSSatish Balay { 249a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 250a30f8f8cSSatish Balay int ierr,i,N = m*n; 251a30f8f8cSSatish Balay MatScalar *vsingle; 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay PetscFunctionBegin; 254a30f8f8cSSatish Balay if (N > b->setvalueslen) { 255a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25682502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 257a30f8f8cSSatish Balay b->setvalueslen = N; 258a30f8f8cSSatish Balay } 259a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 260a30f8f8cSSatish Balay 261a30f8f8cSSatish Balay for (i=0; i<N; i++) { 262a30f8f8cSSatish Balay vsingle[i] = v[i]; 263a30f8f8cSSatish Balay } 264a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 265a30f8f8cSSatish Balay PetscFunctionReturn(0); 266a30f8f8cSSatish Balay } 267a30f8f8cSSatish Balay 2684a2ae208SSatish Balay #undef __FUNCT__ 2694a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 270a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 271a30f8f8cSSatish Balay { 272a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 273a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 274a30f8f8cSSatish Balay MatScalar *vsingle; 275a30f8f8cSSatish Balay 276a30f8f8cSSatish Balay PetscFunctionBegin; 277a30f8f8cSSatish Balay if (N > b->setvalueslen) { 278a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 27982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 280a30f8f8cSSatish Balay b->setvalueslen = N; 281a30f8f8cSSatish Balay } 282a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 283a30f8f8cSSatish Balay for (i=0; i<N; i++) { 284a30f8f8cSSatish Balay vsingle[i] = v[i]; 285a30f8f8cSSatish Balay } 286a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 287a30f8f8cSSatish Balay PetscFunctionReturn(0); 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay 2904a2ae208SSatish Balay #undef __FUNCT__ 2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 292a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 293a30f8f8cSSatish Balay { 294a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 295a30f8f8cSSatish Balay int ierr,i,N = m*n; 296a30f8f8cSSatish Balay MatScalar *vsingle; 297a30f8f8cSSatish Balay 298a30f8f8cSSatish Balay PetscFunctionBegin; 29929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3004d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 301a30f8f8cSSatish Balay } 302a30f8f8cSSatish Balay 3034a2ae208SSatish Balay #undef __FUNCT__ 3044a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 305a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 306a30f8f8cSSatish Balay { 307a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 308a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 309a30f8f8cSSatish Balay MatScalar *vsingle; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay PetscFunctionBegin; 31229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3134d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay #endif 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 318a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 319a30f8f8cSSatish Balay */ 3204a2ae208SSatish Balay #undef __FUNCT__ 3214a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 322a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 323a30f8f8cSSatish Balay { 324a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 325a30f8f8cSSatish Balay MatScalar value; 326b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 327a30f8f8cSSatish Balay int ierr,i,j,row,col; 328b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 329a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 330a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 331a30f8f8cSSatish Balay 332a30f8f8cSSatish Balay /* Some Variables required in the macro */ 333a30f8f8cSSatish Balay Mat A = baij->A; 334a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 335a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 336a30f8f8cSSatish Balay MatScalar *aa=a->a; 337a30f8f8cSSatish Balay 338a30f8f8cSSatish Balay Mat B = baij->B; 339a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 340a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 341a30f8f8cSSatish Balay MatScalar *ba=b->a; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 344a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 345a30f8f8cSSatish Balay MatScalar *ap,*bap; 346a30f8f8cSSatish Balay 347a30f8f8cSSatish Balay /* for stash */ 348f65c83cfSHong Zhang int n_loc, *in_loc=0; 349f65c83cfSHong Zhang MatScalar *v_loc=0; 350a30f8f8cSSatish Balay 351a30f8f8cSSatish Balay PetscFunctionBegin; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay if(!baij->donotstash){ 35482502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35582502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 356a30f8f8cSSatish Balay } 357a30f8f8cSSatish Balay 358a30f8f8cSSatish Balay for (i=0; i<m; i++) { 359a30f8f8cSSatish Balay if (im[i] < 0) continue; 360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 361b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 362a30f8f8cSSatish Balay #endif 363a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 364a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 365a30f8f8cSSatish Balay for (j=0; j<n; j++) { 366f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 367a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 368a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 369a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 370a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 371a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 372a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 373a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 374a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 376b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 377a30f8f8cSSatish Balay #endif 378a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 379a30f8f8cSSatish Balay if (mat->was_assembled) { 380a30f8f8cSSatish Balay if (!baij->colmap) { 381a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 384a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 385a30f8f8cSSatish Balay col = col - 1 + in[j]%bs; 386a30f8f8cSSatish Balay #else 387a30f8f8cSSatish Balay col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 388a30f8f8cSSatish Balay #endif 389a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 390a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 391a30f8f8cSSatish Balay col = in[j]; 392a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 393a30f8f8cSSatish Balay B = baij->B; 394a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 395a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 396a30f8f8cSSatish Balay ba=b->a; 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } else col = in[j]; 399a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 400a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 401a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay } else { /* off processor entry */ 405a30f8f8cSSatish Balay if (!baij->donotstash) { 406a30f8f8cSSatish Balay n_loc = 0; 407a30f8f8cSSatish Balay for (j=0; j<n; j++){ 408f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 409a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 410a30f8f8cSSatish Balay if (roworiented) { 411a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 412a30f8f8cSSatish Balay } else { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 414a30f8f8cSSatish Balay } 415a30f8f8cSSatish Balay n_loc++; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay 422a30f8f8cSSatish Balay if(!baij->donotstash){ 423a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 424a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 425a30f8f8cSSatish Balay } 426a30f8f8cSSatish Balay PetscFunctionReturn(0); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay 4294a2ae208SSatish Balay #undef __FUNCT__ 4304a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 431a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 432a30f8f8cSSatish Balay { 433a30f8f8cSSatish Balay PetscFunctionBegin; 43429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 436a30f8f8cSSatish Balay } 437a30f8f8cSSatish Balay 438a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 439a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 440a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 441a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4424a2ae208SSatish Balay #undef __FUNCT__ 4434a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 444a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 445a30f8f8cSSatish Balay { 446a30f8f8cSSatish Balay PetscFunctionBegin; 44729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 44896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 449a30f8f8cSSatish Balay } 450a30f8f8cSSatish Balay 4514a2ae208SSatish Balay #undef __FUNCT__ 4524a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 453a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 454a30f8f8cSSatish Balay { 455a30f8f8cSSatish Balay PetscFunctionBegin; 45629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 458a30f8f8cSSatish Balay } 459a30f8f8cSSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 4614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 462a30f8f8cSSatish Balay int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 463a30f8f8cSSatish Balay { 464f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 465a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 466a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 467a30f8f8cSSatish Balay 468a30f8f8cSSatish Balay PetscFunctionBegin; 469a30f8f8cSSatish Balay for (i=0; i<m; i++) { 47029bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 471b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 472a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 473a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 474a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47529bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 476b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 477a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 478a30f8f8cSSatish Balay col = idxn[j] - bscstart; 479c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 480a30f8f8cSSatish Balay } else { 481a30f8f8cSSatish Balay if (!baij->colmap) { 482a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 483a30f8f8cSSatish Balay } 484a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 485a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 486a30f8f8cSSatish Balay data --; 487a30f8f8cSSatish Balay #else 488a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 489a30f8f8cSSatish Balay #endif 490a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 491a30f8f8cSSatish Balay else { 492a30f8f8cSSatish Balay col = data + idxn[j]%bs; 493c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay } else { 49829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 499a30f8f8cSSatish Balay } 500a30f8f8cSSatish Balay } 501a30f8f8cSSatish Balay PetscFunctionReturn(0); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay 5044a2ae208SSatish Balay #undef __FUNCT__ 5054a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 506a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 507a30f8f8cSSatish Balay { 508a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 509bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 510bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 511a30f8f8cSSatish Balay int ierr; 512a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 513a30f8f8cSSatish Balay 514a30f8f8cSSatish Balay PetscFunctionBegin; 515a30f8f8cSSatish Balay if (baij->size == 1) { 516a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 517a30f8f8cSSatish Balay } else { 518a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 51982502324SSatish Balay ierr = PetscMalloc(2*sizeof(double),&lnorm2);CHKERRQ(ierr); 520a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 521a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 522a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 523a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 524a30f8f8cSSatish Balay /* 525a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 526a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 527a30f8f8cSSatish Balay */ 528a30f8f8cSSatish Balay ierr = MPI_Allreduce(lnorm2,&sum,2,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 529a30f8f8cSSatish Balay /* 530a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 531a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 534a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 535a30f8f8cSSatish Balay } else { 53629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay PetscFunctionReturn(0); 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay 542a30f8f8cSSatish Balay /* 543a30f8f8cSSatish Balay Creates the hash table, and sets the table 544a30f8f8cSSatish Balay This table is created only once. 545a30f8f8cSSatish Balay If new entried need to be added to the matrix 546a30f8f8cSSatish Balay then the hash table has to be destroyed and 547a30f8f8cSSatish Balay recreated. 548a30f8f8cSSatish Balay */ 5494a2ae208SSatish Balay #undef __FUNCT__ 5504a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 551a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 552a30f8f8cSSatish Balay { 553a30f8f8cSSatish Balay PetscFunctionBegin; 55429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 556a30f8f8cSSatish Balay } 557a30f8f8cSSatish Balay 5584a2ae208SSatish Balay #undef __FUNCT__ 5594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 560a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 561a30f8f8cSSatish Balay { 562a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 563a30f8f8cSSatish Balay int ierr,nstash,reallocs; 564a30f8f8cSSatish Balay InsertMode addv; 565a30f8f8cSSatish Balay 566a30f8f8cSSatish Balay PetscFunctionBegin; 567a30f8f8cSSatish Balay if (baij->donotstash) { 568a30f8f8cSSatish Balay PetscFunctionReturn(0); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay 571a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 572a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 573a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 577a30f8f8cSSatish Balay 578a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 579a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 580a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 581b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 582a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 583b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 584a30f8f8cSSatish Balay PetscFunctionReturn(0); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay 5874a2ae208SSatish Balay #undef __FUNCT__ 5884a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 589a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 590a30f8f8cSSatish Balay { 591a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 592a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 593a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 594a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 595a30f8f8cSSatish Balay int *row,*col,other_disassembled; 596a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 597a30f8f8cSSatish Balay MatScalar *val; 598a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 5996f651dedSSatish Balay /* int rank;*/ 600a30f8f8cSSatish Balay 601a30f8f8cSSatish Balay PetscFunctionBegin; 602a30f8f8cSSatish Balay /* remove 2 line below later */ 6036f651dedSSatish Balay /*ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRQ(ierr); */ 604a30f8f8cSSatish Balay 605a30f8f8cSSatish Balay if (!baij->donotstash) { 606a30f8f8cSSatish Balay while (1) { 607a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 608a30f8f8cSSatish Balay /* 609a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 610a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 611a30f8f8cSSatish Balay */ 612a30f8f8cSSatish Balay if (!flg) break; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay for (i=0; i<n;) { 615a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 616a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 617a30f8f8cSSatish Balay if (j < n) ncols = j-i; 618a30f8f8cSSatish Balay else ncols = n-i; 619a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 620a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 621a30f8f8cSSatish Balay i = j; 622a30f8f8cSSatish Balay } 623a30f8f8cSSatish Balay } 624a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 625a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 626a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 627a30f8f8cSSatish Balay restore the original flags */ 628a30f8f8cSSatish Balay r1 = baij->roworiented; 629a30f8f8cSSatish Balay r2 = a->roworiented; 630a30f8f8cSSatish Balay r3 = b->roworiented; 631a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 632a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 633a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 634a30f8f8cSSatish Balay while (1) { 635a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 636a30f8f8cSSatish Balay if (!flg) break; 637a30f8f8cSSatish Balay 638a30f8f8cSSatish Balay for (i=0; i<n;) { 639a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 640a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 641a30f8f8cSSatish Balay if (j < n) ncols = j-i; 642a30f8f8cSSatish Balay else ncols = n-i; 643a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 644a30f8f8cSSatish Balay i = j; 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay } 647a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 648a30f8f8cSSatish Balay baij->roworiented = r1; 649a30f8f8cSSatish Balay a->roworiented = r2; 650a30f8f8cSSatish Balay b->roworiented = r3; 651a30f8f8cSSatish Balay } 652a30f8f8cSSatish Balay 653a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 654a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 657a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 658a30f8f8cSSatish Balay /* 659a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 660a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 661a30f8f8cSSatish Balay */ 662a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 663a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 664a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 665c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay 669a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 670a30f8f8cSSatish Balay ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); 671a30f8f8cSSatish Balay } 672a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 673a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 676a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 677b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 678a30f8f8cSSatish Balay baij->ht_total_ct = 0; 679a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay #endif 682a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 683c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 684a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 685a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay 688a30f8f8cSSatish Balay if (baij->rowvalues) { 689a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 690a30f8f8cSSatish Balay baij->rowvalues = 0; 691a30f8f8cSSatish Balay } 692a30f8f8cSSatish Balay PetscFunctionReturn(0); 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay 6954a2ae208SSatish Balay #undef __FUNCT__ 6964a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 697b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 698a30f8f8cSSatish Balay { 699a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 700fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 701a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 702b0a32e0cSBarry Smith PetscViewer sviewer; 703f3ef73ceSBarry Smith PetscViewerFormat format; 704a30f8f8cSSatish Balay 705a30f8f8cSSatish Balay PetscFunctionBegin; 706b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 707fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 708a30f8f8cSSatish Balay if (isascii) { 709b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 710fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_INFO_LONG) { 711a30f8f8cSSatish Balay MatInfo info; 712a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 713a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 714b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 715b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 716a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 718b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 719a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 720b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 721b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 722a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 723a30f8f8cSSatish Balay PetscFunctionReturn(0); 724fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 725b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 726a30f8f8cSSatish Balay PetscFunctionReturn(0); 727a30f8f8cSSatish Balay } 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay if (isdraw) { 731b0a32e0cSBarry Smith PetscDraw draw; 732a30f8f8cSSatish Balay PetscTruth isnull; 733b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 734b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay if (size == 1) { 738e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 739a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 740a30f8f8cSSatish Balay } else { 741a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 742a30f8f8cSSatish Balay Mat A; 74365d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74465d70643SHong Zhang Mat_SeqBAIJ *Bloc; 745b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 746a30f8f8cSSatish Balay MatScalar *a; 747a30f8f8cSSatish Balay 748a30f8f8cSSatish Balay if (!rank) { 749bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 750a30f8f8cSSatish Balay } else { 751f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 752a30f8f8cSSatish Balay } 753b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay /* copy over the A part */ 75665d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 757a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 75882502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 759a30f8f8cSSatish Balay 760a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 761a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 762a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 763a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 764a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 765a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 766a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 767a30f8f8cSSatish Balay col++; a += bs; 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay /* copy over the B part */ 77265d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77365d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 774a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 775a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 776a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 777a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 778a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 779a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 780a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 781a30f8f8cSSatish Balay col++; a += bs; 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 786a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 787a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 788a30f8f8cSSatish Balay /* 789a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 790b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 791a30f8f8cSSatish Balay */ 792b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79365d70643SHong Zhang if (!rank) { 794e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 795a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 796a30f8f8cSSatish Balay } 797b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 798a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 799a30f8f8cSSatish Balay } 800a30f8f8cSSatish Balay PetscFunctionReturn(0); 801a30f8f8cSSatish Balay } 802a30f8f8cSSatish Balay 8034a2ae208SSatish Balay #undef __FUNCT__ 8044a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 805b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 806a30f8f8cSSatish Balay { 807a30f8f8cSSatish Balay int ierr; 808a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 809a30f8f8cSSatish Balay 810a30f8f8cSSatish Balay PetscFunctionBegin; 811b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 812fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 813b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 814fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 815a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 816a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 817a30f8f8cSSatish Balay } else { 81829bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay PetscFunctionReturn(0); 821a30f8f8cSSatish Balay } 822a30f8f8cSSatish Balay 8234a2ae208SSatish Balay #undef __FUNCT__ 8244a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 825a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 826a30f8f8cSSatish Balay { 827a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 828a30f8f8cSSatish Balay int ierr; 829a30f8f8cSSatish Balay 830a30f8f8cSSatish Balay PetscFunctionBegin; 831a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 832b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 833a30f8f8cSSatish Balay #endif 834a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 835a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 836a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 837a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 838a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 839a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 840a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 841a30f8f8cSSatish Balay #else 842a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 843a30f8f8cSSatish Balay #endif 844a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 845a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 846a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 847a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 848a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 849a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 850a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 851a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 852a30f8f8cSSatish Balay #endif 853a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 854a30f8f8cSSatish Balay PetscFunctionReturn(0); 855a30f8f8cSSatish Balay } 856a30f8f8cSSatish Balay 8574a2ae208SSatish Balay #undef __FUNCT__ 8584a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPISBAIJ" 859a30f8f8cSSatish Balay int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 860a30f8f8cSSatish Balay { 861a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 862a30f8f8cSSatish Balay int ierr,nt; 863a30f8f8cSSatish Balay 864a30f8f8cSSatish Balay PetscFunctionBegin; 865a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 866b5df2d14SHong Zhang if (nt != A->n) { 86729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 868a30f8f8cSSatish Balay } 869a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 870b5df2d14SHong Zhang if (nt != A->m) { 87129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 872a30f8f8cSSatish Balay } 87365d70643SHong Zhang 874b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 875b941877fSHong Zhang /* do diagonal part */ 876b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 877b941877fSHong Zhang /* do supperdiagonal part */ 878b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 879b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 880b941877fSHong Zhang /* do subdiagonal part */ 881b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 882b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 883b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 88465d70643SHong Zhang 885a30f8f8cSSatish Balay PetscFunctionReturn(0); 886a30f8f8cSSatish Balay } 887a30f8f8cSSatish Balay 8884a2ae208SSatish Balay #undef __FUNCT__ 8894a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 890a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 891a30f8f8cSSatish Balay { 892de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 893aa482183SHong Zhang int ierr; 894a30f8f8cSSatish Balay 895a30f8f8cSSatish Balay PetscFunctionBegin; 896b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 897b941877fSHong Zhang /* do diagonal part */ 898b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 899b941877fSHong Zhang /* do supperdiagonal part */ 900b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 901de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 902de8b6608SHong Zhang 903b941877fSHong Zhang /* do subdiagonal part */ 904a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 905a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 906a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 907aa482183SHong Zhang 908a30f8f8cSSatish Balay PetscFunctionReturn(0); 909a30f8f8cSSatish Balay } 910a30f8f8cSSatish Balay 9114a2ae208SSatish Balay #undef __FUNCT__ 9124a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 913a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 914a30f8f8cSSatish Balay { 915a30f8f8cSSatish Balay PetscFunctionBegin; 91629bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 91796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 918a30f8f8cSSatish Balay } 919a30f8f8cSSatish Balay 9204a2ae208SSatish Balay #undef __FUNCT__ 9214a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 922a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 923a30f8f8cSSatish Balay { 924a30f8f8cSSatish Balay PetscFunctionBegin; 92529bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 92696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 927a30f8f8cSSatish Balay } 928a30f8f8cSSatish Balay 929a30f8f8cSSatish Balay /* 930a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 931a30f8f8cSSatish Balay diagonal block 932a30f8f8cSSatish Balay */ 9334a2ae208SSatish Balay #undef __FUNCT__ 9344a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 935a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 936a30f8f8cSSatish Balay { 937a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 938a30f8f8cSSatish Balay int ierr; 939a30f8f8cSSatish Balay 940a30f8f8cSSatish Balay PetscFunctionBegin; 94129bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 942a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 943a30f8f8cSSatish Balay PetscFunctionReturn(0); 944a30f8f8cSSatish Balay } 945a30f8f8cSSatish Balay 9464a2ae208SSatish Balay #undef __FUNCT__ 9474a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 948a30f8f8cSSatish Balay int MatScale_MPISBAIJ(Scalar *aa,Mat A) 949a30f8f8cSSatish Balay { 950a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 951a30f8f8cSSatish Balay int ierr; 952a30f8f8cSSatish Balay 953a30f8f8cSSatish Balay PetscFunctionBegin; 954a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 955a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 956a30f8f8cSSatish Balay PetscFunctionReturn(0); 957a30f8f8cSSatish Balay } 958a30f8f8cSSatish Balay 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatGetOwnershipRange_MPISBAIJ" 961a30f8f8cSSatish Balay int MatGetOwnershipRange_MPISBAIJ(Mat matin,int *m,int *n) 962a30f8f8cSSatish Balay { 963a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 964a30f8f8cSSatish Balay 965a30f8f8cSSatish Balay PetscFunctionBegin; 966a30f8f8cSSatish Balay if (m) *m = mat->rstart*mat->bs; 967a30f8f8cSSatish Balay if (n) *n = mat->rend*mat->bs; 968a30f8f8cSSatish Balay PetscFunctionReturn(0); 969a30f8f8cSSatish Balay } 970a30f8f8cSSatish Balay 9714a2ae208SSatish Balay #undef __FUNCT__ 9724a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 973a30f8f8cSSatish Balay int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 974a30f8f8cSSatish Balay { 975a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 976a30f8f8cSSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 977a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 978a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 979a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 980a30f8f8cSSatish Balay 981a30f8f8cSSatish Balay PetscFunctionBegin; 98229bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 983a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 986a30f8f8cSSatish Balay /* 987a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 988a30f8f8cSSatish Balay */ 989a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 990a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 991a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 992a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 993a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 994a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 995a30f8f8cSSatish Balay } 996b0a32e0cSBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)),&mat->rowvalues);CHKERRQ(ierr); 997a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay 100029bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1001a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1002a30f8f8cSSatish Balay 1003a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1004a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1005a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1006a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1007a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1008a30f8f8cSSatish Balay nztot = nzA + nzB; 1009a30f8f8cSSatish Balay 1010a30f8f8cSSatish Balay cmap = mat->garray; 1011a30f8f8cSSatish Balay if (v || idx) { 1012a30f8f8cSSatish Balay if (nztot) { 1013a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1014a30f8f8cSSatish Balay int imark = -1; 1015a30f8f8cSSatish Balay if (v) { 1016a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1017a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1018a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1019a30f8f8cSSatish Balay else break; 1020a30f8f8cSSatish Balay } 1021a30f8f8cSSatish Balay imark = i; 1022a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1023a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1024a30f8f8cSSatish Balay } 1025a30f8f8cSSatish Balay if (idx) { 1026a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1027a30f8f8cSSatish Balay if (imark > -1) { 1028a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1029a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1030a30f8f8cSSatish Balay } 1031a30f8f8cSSatish Balay } else { 1032a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1033a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1034a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1035a30f8f8cSSatish Balay else break; 1036a30f8f8cSSatish Balay } 1037a30f8f8cSSatish Balay imark = i; 1038a30f8f8cSSatish Balay } 1039a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1040a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1041a30f8f8cSSatish Balay } 1042a30f8f8cSSatish Balay } else { 1043a30f8f8cSSatish Balay if (idx) *idx = 0; 1044a30f8f8cSSatish Balay if (v) *v = 0; 1045a30f8f8cSSatish Balay } 1046a30f8f8cSSatish Balay } 1047a30f8f8cSSatish Balay *nz = nztot; 1048a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1049a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1050a30f8f8cSSatish Balay PetscFunctionReturn(0); 1051a30f8f8cSSatish Balay } 1052a30f8f8cSSatish Balay 10534a2ae208SSatish Balay #undef __FUNCT__ 10544a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 1055a30f8f8cSSatish Balay int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1056a30f8f8cSSatish Balay { 1057a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1058a30f8f8cSSatish Balay 1059a30f8f8cSSatish Balay PetscFunctionBegin; 1060a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 106129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1062a30f8f8cSSatish Balay } 1063a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1064a30f8f8cSSatish Balay PetscFunctionReturn(0); 1065a30f8f8cSSatish Balay } 1066a30f8f8cSSatish Balay 10674a2ae208SSatish Balay #undef __FUNCT__ 10684a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1069a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1070a30f8f8cSSatish Balay { 1071a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1072a30f8f8cSSatish Balay 1073a30f8f8cSSatish Balay PetscFunctionBegin; 1074a30f8f8cSSatish Balay *bs = baij->bs; 1075a30f8f8cSSatish Balay PetscFunctionReturn(0); 1076a30f8f8cSSatish Balay } 1077a30f8f8cSSatish Balay 10784a2ae208SSatish Balay #undef __FUNCT__ 10794a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1080a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1081a30f8f8cSSatish Balay { 1082a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1083a30f8f8cSSatish Balay int ierr; 1084a30f8f8cSSatish Balay 1085a30f8f8cSSatish Balay PetscFunctionBegin; 1086a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1087a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1088a30f8f8cSSatish Balay PetscFunctionReturn(0); 1089a30f8f8cSSatish Balay } 1090a30f8f8cSSatish Balay 10914a2ae208SSatish Balay #undef __FUNCT__ 10924a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1093a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1094a30f8f8cSSatish Balay { 1095a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1096a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1097a30f8f8cSSatish Balay int ierr; 1098a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1099a30f8f8cSSatish Balay 1100a30f8f8cSSatish Balay PetscFunctionBegin; 1101a30f8f8cSSatish Balay info->block_size = (double)a->bs; 1102a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1103a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1104a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1105a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1106a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1107a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1108a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1109a30f8f8cSSatish Balay info->nz_used = isend[0]; 1110a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1111a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1112a30f8f8cSSatish Balay info->memory = isend[3]; 1113a30f8f8cSSatish Balay info->mallocs = isend[4]; 1114a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1115a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 1116a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1117a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1118a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1119a30f8f8cSSatish Balay info->memory = irecv[3]; 1120a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1121a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1122a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 1123a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1124a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1125a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1126a30f8f8cSSatish Balay info->memory = irecv[3]; 1127a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1128a30f8f8cSSatish Balay } else { 112929bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1130a30f8f8cSSatish Balay } 1131b5df2d14SHong Zhang info->rows_global = (double)A->M; 1132b5df2d14SHong Zhang info->columns_global = (double)A->N; 1133b5df2d14SHong Zhang info->rows_local = (double)A->m; 1134b5df2d14SHong Zhang info->columns_local = (double)A->N; 1135a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1136a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1137a30f8f8cSSatish Balay info->factor_mallocs = 0; 1138a30f8f8cSSatish Balay PetscFunctionReturn(0); 1139a30f8f8cSSatish Balay } 1140a30f8f8cSSatish Balay 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1143a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1144a30f8f8cSSatish Balay { 1145a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1146a30f8f8cSSatish Balay int ierr; 1147a30f8f8cSSatish Balay 1148a30f8f8cSSatish Balay PetscFunctionBegin; 1149*e98b92d7SKris Buschelman switch (op) { 1150*e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1151*e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1152*e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1153*e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1154*e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1155*e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1156*e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1157a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1158a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1159*e98b92d7SKris Buschelman break; 1160*e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1161a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1162a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1163a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1164*e98b92d7SKris Buschelman break; 1165*e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1166*e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1167*e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1168*e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1169b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1170*e98b92d7SKris Buschelman break; 1171*e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1172a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1173a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1175*e98b92d7SKris Buschelman break; 1176*e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1177a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1178*e98b92d7SKris Buschelman break; 1179*e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 118029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1181*e98b92d7SKris Buschelman break; 1182*e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1183a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1184*e98b92d7SKris Buschelman break; 1185*e98b92d7SKris Buschelman default: 118629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1187*e98b92d7SKris Buschelman break; 1188a30f8f8cSSatish Balay } 1189a30f8f8cSSatish Balay PetscFunctionReturn(0); 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay 11924a2ae208SSatish Balay #undef __FUNCT__ 11934a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPISBAIJ(" 1194a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1195a30f8f8cSSatish Balay { 1196a30f8f8cSSatish Balay PetscFunctionBegin; 119729bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. MatTranspose() should not be called"); 119896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1199a30f8f8cSSatish Balay } 1200a30f8f8cSSatish Balay 12014a2ae208SSatish Balay #undef __FUNCT__ 12024a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1203a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1204a30f8f8cSSatish Balay { 1205a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1206a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1207a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1208a30f8f8cSSatish Balay 1209a30f8f8cSSatish Balay PetscFunctionBegin; 1210a30f8f8cSSatish Balay if (ll != rr) { 121129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1214a30f8f8cSSatish Balay if (rr) { 1215a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 121629bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1217a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1218a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1219a30f8f8cSSatish Balay /*} if (ll) { */ 1220a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 122129bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1222a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1223a30f8f8cSSatish Balay /* } */ 1224a30f8f8cSSatish Balay /* scale the diagonal block */ 1225a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1226a30f8f8cSSatish Balay 1227a30f8f8cSSatish Balay /* if (rr) { */ 1228a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1229a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1230a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1231a30f8f8cSSatish Balay } 1232a30f8f8cSSatish Balay 1233a30f8f8cSSatish Balay PetscFunctionReturn(0); 1234a30f8f8cSSatish Balay } 1235a30f8f8cSSatish Balay 12364a2ae208SSatish Balay #undef __FUNCT__ 12374a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1238a30f8f8cSSatish Balay int MatZeroRows_MPISBAIJ(Mat A,IS is,Scalar *diag) 1239a30f8f8cSSatish Balay { 1240a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1241a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 124235d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 1243a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1244a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1245a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1246a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1247a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1248a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1249a30f8f8cSSatish Balay IS istmp; 125035d8aa7fSBarry Smith PetscTruth found; 1251a30f8f8cSSatish Balay 1252a30f8f8cSSatish Balay PetscFunctionBegin; 1253a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1254a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1255a30f8f8cSSatish Balay 1256a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 125782502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1258a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1259a30f8f8cSSatish Balay procs = nprocs + size; 1260b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 1261a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1262a30f8f8cSSatish Balay idx = rows[i]; 126335d8aa7fSBarry Smith found = PETSC_FALSE; 1264a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1265a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 126635d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 1267a30f8f8cSSatish Balay } 1268a30f8f8cSSatish Balay } 126929bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1272a30f8f8cSSatish Balay 1273a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 127482502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 1275a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1276a30f8f8cSSatish Balay nmax = work[rank]; 1277a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1278a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1279a30f8f8cSSatish Balay 1280a30f8f8cSSatish Balay /* post receives: */ 1281b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1282b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 1283a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1284a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1285a30f8f8cSSatish Balay } 1286a30f8f8cSSatish Balay 1287a30f8f8cSSatish Balay /* do sends: 1288a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1289a30f8f8cSSatish Balay the ith processor 1290a30f8f8cSSatish Balay */ 1291b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1292b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1293b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 1294a30f8f8cSSatish Balay starts[0] = 0; 1295a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1296a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1297a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1298a30f8f8cSSatish Balay } 1299a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1300a30f8f8cSSatish Balay 1301a30f8f8cSSatish Balay starts[0] = 0; 1302a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1303a30f8f8cSSatish Balay count = 0; 1304a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1305a30f8f8cSSatish Balay if (procs[i]) { 1306a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay } 1308a30f8f8cSSatish Balay } 1309a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1310a30f8f8cSSatish Balay 1311a30f8f8cSSatish Balay base = owners[rank]*bs; 1312a30f8f8cSSatish Balay 1313a30f8f8cSSatish Balay /* wait on receives */ 1314b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 1315a30f8f8cSSatish Balay source = lens + nrecvs; 1316a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1317a30f8f8cSSatish Balay while (count) { 1318a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay /* unpack receives into our local space */ 1320a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1321a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1322a30f8f8cSSatish Balay lens[imdex] = n; 1323a30f8f8cSSatish Balay slen += n; 1324a30f8f8cSSatish Balay count--; 1325a30f8f8cSSatish Balay } 1326a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1327a30f8f8cSSatish Balay 1328a30f8f8cSSatish Balay /* move the data into the send scatter */ 1329b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 1330a30f8f8cSSatish Balay count = 0; 1331a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1332a30f8f8cSSatish Balay values = rvalues + i*nmax; 1333a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1334a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1335a30f8f8cSSatish Balay } 1336a30f8f8cSSatish Balay } 1337a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1339a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay 1342a30f8f8cSSatish Balay /* actually zap the local rows */ 1343a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1344b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1345a30f8f8cSSatish Balay 1346a30f8f8cSSatish Balay /* 1347a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1348a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1349a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1350a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1351a30f8f8cSSatish Balay 1352a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1353a30f8f8cSSatish Balay */ 1354a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1355ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1356a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1357a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1358a30f8f8cSSatish Balay } else if (diag) { 1359a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1360a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 136129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1362a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1365a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1366a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1367a30f8f8cSSatish Balay } 1368a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1369a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1370a30f8f8cSSatish Balay } else { 1371a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1372a30f8f8cSSatish Balay } 1373a30f8f8cSSatish Balay 1374a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1375a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1376a30f8f8cSSatish Balay 1377a30f8f8cSSatish Balay /* wait on sends */ 1378a30f8f8cSSatish Balay if (nsends) { 137982502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1380a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1381a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1382a30f8f8cSSatish Balay } 1383a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1384a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1385a30f8f8cSSatish Balay 1386a30f8f8cSSatish Balay PetscFunctionReturn(0); 1387a30f8f8cSSatish Balay } 1388a30f8f8cSSatish Balay 13894a2ae208SSatish Balay #undef __FUNCT__ 13904a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1391a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1392a30f8f8cSSatish Balay { 1393a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1394a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1395a30f8f8cSSatish Balay static int called = 0; 1396a30f8f8cSSatish Balay int ierr; 1397a30f8f8cSSatish Balay 1398a30f8f8cSSatish Balay PetscFunctionBegin; 1399a30f8f8cSSatish Balay if (!a->rank) { 1400a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1401a30f8f8cSSatish Balay } 1402a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1403a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1404a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1405a30f8f8cSSatish Balay PetscFunctionReturn(0); 1406a30f8f8cSSatish Balay } 1407a30f8f8cSSatish Balay 14084a2ae208SSatish Balay #undef __FUNCT__ 14094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1410a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1411a30f8f8cSSatish Balay { 1412f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1413a30f8f8cSSatish Balay int ierr; 1414a30f8f8cSSatish Balay 1415a30f8f8cSSatish Balay PetscFunctionBegin; 1416a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1417a30f8f8cSSatish Balay PetscFunctionReturn(0); 1418a30f8f8cSSatish Balay } 1419a30f8f8cSSatish Balay 1420a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1421a30f8f8cSSatish Balay 14224a2ae208SSatish Balay #undef __FUNCT__ 14234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1424a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1425a30f8f8cSSatish Balay { 1426a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1427a30f8f8cSSatish Balay Mat a,b,c,d; 1428a30f8f8cSSatish Balay PetscTruth flg; 1429a30f8f8cSSatish Balay int ierr; 1430a30f8f8cSSatish Balay 1431a30f8f8cSSatish Balay PetscFunctionBegin; 1432b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1433b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1434a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1435a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1436a30f8f8cSSatish Balay 1437a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1438a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1439a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1440a30f8f8cSSatish Balay } 1441a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1442a30f8f8cSSatish Balay PetscFunctionReturn(0); 1443a30f8f8cSSatish Balay } 1444a30f8f8cSSatish Balay 14454a2ae208SSatish Balay #undef __FUNCT__ 14464a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1447273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1448273d9f13SBarry Smith { 1449273d9f13SBarry Smith int ierr; 1450273d9f13SBarry Smith 1451273d9f13SBarry Smith PetscFunctionBegin; 1452273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1453273d9f13SBarry Smith PetscFunctionReturn(0); 1454273d9f13SBarry Smith } 1455a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1456a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1457a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1458a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1459a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1460a30f8f8cSSatish Balay MatMult_MPISBAIJ, 1461a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1462a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1463a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1464a30f8f8cSSatish Balay 0, 1465a30f8f8cSSatish Balay 0, 1466a30f8f8cSSatish Balay 0, 1467a30f8f8cSSatish Balay 0, 1468a30f8f8cSSatish Balay 0, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1472a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1473a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1474a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1475a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1476a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1477a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1478a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1481a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1482a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1488b5df2d14SHong Zhang 0, 1489a30f8f8cSSatish Balay MatGetOwnershipRange_MPISBAIJ, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1501a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1502a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1505a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1519a30f8f8cSSatish Balay 0, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay 0, 152224d5174aSHong Zhang MatGetMaps_Petsc, 152324d5174aSHong Zhang 0, 152424d5174aSHong Zhang 0, 152524d5174aSHong Zhang 0, 152624d5174aSHong Zhang 0, 152724d5174aSHong Zhang 0, 152824d5174aSHong Zhang 0, 152924d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1530a30f8f8cSSatish Balay 1531a30f8f8cSSatish Balay 1532a30f8f8cSSatish Balay EXTERN_C_BEGIN 15334a2ae208SSatish Balay #undef __FUNCT__ 15344a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1535a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1536a30f8f8cSSatish Balay { 1537a30f8f8cSSatish Balay PetscFunctionBegin; 1538a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1539a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1540a30f8f8cSSatish Balay PetscFunctionReturn(0); 1541a30f8f8cSSatish Balay } 1542a30f8f8cSSatish Balay EXTERN_C_END 1543a30f8f8cSSatish Balay 1544273d9f13SBarry Smith EXTERN_C_BEGIN 15454a2ae208SSatish Balay #undef __FUNCT__ 15464a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1547b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1548b5df2d14SHong Zhang { 1549b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1550ca54ac64SHong Zhang int ierr; 1551b5df2d14SHong Zhang PetscTruth flg; 1552b5df2d14SHong Zhang 1553b5df2d14SHong Zhang PetscFunctionBegin; 1554b5df2d14SHong Zhang 1555b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1556b0a32e0cSBarry Smith B->data = (void*)b; 1557b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1558b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1559b5df2d14SHong Zhang 1560b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1561b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1562b5df2d14SHong Zhang B->mapping = 0; 1563b5df2d14SHong Zhang B->factor = 0; 1564b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1565b5df2d14SHong Zhang 1566b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1567b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1568b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1569b5df2d14SHong Zhang 1570b5df2d14SHong Zhang /* build local table of row and column ownerships */ 157182502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1572273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1573273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1574b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1575b5df2d14SHong Zhang 1576b5df2d14SHong Zhang /* build cache for off array entries formed */ 1577b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1578b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1579b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1580b5df2d14SHong Zhang b->garray = PETSC_NULL; 1581b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1582b5df2d14SHong Zhang 1583f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1584b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 158564a35ccbSBarry Smith b->setvalueslen = 0; 1586b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1587b5df2d14SHong Zhang #endif 1588b5df2d14SHong Zhang 1589b5df2d14SHong Zhang /* stuff used in block assembly */ 1590b5df2d14SHong Zhang b->barray = 0; 1591b5df2d14SHong Zhang 1592b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1593b5df2d14SHong Zhang b->lvec = 0; 1594b5df2d14SHong Zhang b->Mvctx = 0; 1595b5df2d14SHong Zhang 1596b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1597b5df2d14SHong Zhang b->rowindices = 0; 1598b5df2d14SHong Zhang b->rowvalues = 0; 1599b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1600b5df2d14SHong Zhang 1601b5df2d14SHong Zhang /* hash table stuff */ 1602b5df2d14SHong Zhang b->ht = 0; 1603b5df2d14SHong Zhang b->hd = 0; 1604b5df2d14SHong Zhang b->ht_size = 0; 1605b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1606b5df2d14SHong Zhang b->ht_fact = 0; 1607b5df2d14SHong Zhang b->ht_total_ct = 0; 1608b5df2d14SHong Zhang b->ht_insert_ct = 0; 1609b5df2d14SHong Zhang 1610b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1611b5df2d14SHong Zhang if (flg) { 1612b5df2d14SHong Zhang double fact = 1.39; 1613b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1614b0a32e0cSBarry Smith ierr = PetscOptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1615b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1616b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1617b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1618b5df2d14SHong Zhang } 1619b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1620b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1621b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1622b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1623b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1624b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1625b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1626b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1627b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1628b5df2d14SHong Zhang PetscFunctionReturn(0); 1629b5df2d14SHong Zhang } 1630273d9f13SBarry Smith EXTERN_C_END 1631b5df2d14SHong Zhang 16324a2ae208SSatish Balay #undef __FUNCT__ 16334a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1634b5df2d14SHong Zhang /*@C 1635b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1636b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1637b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1638b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1639b5df2d14SHong Zhang 1640b5df2d14SHong Zhang Collective on Mat 1641b5df2d14SHong Zhang 1642b5df2d14SHong Zhang Input Parameters: 1643b5df2d14SHong Zhang + A - the matrix 1644b5df2d14SHong Zhang . bs - size of blockk 1645b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1646b5df2d14SHong Zhang submatrix (same for all local rows) 1647b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 1648b5df2d14SHong Zhang of the in diagonal portion of the local (possibly different for each block 1649b5df2d14SHong Zhang row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1650b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1651b5df2d14SHong Zhang submatrix (same for all local rows). 1652b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1653b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1654b5df2d14SHong Zhang each block row) or PETSC_NULL. 1655b5df2d14SHong Zhang 1656b5df2d14SHong Zhang 1657b5df2d14SHong Zhang Options Database Keys: 1658b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1659b5df2d14SHong Zhang block calculations (much slower) 1660b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1661b5df2d14SHong Zhang 1662b5df2d14SHong Zhang Notes: 1663b5df2d14SHong Zhang 1664b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1665b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1666b5df2d14SHong Zhang 1667b5df2d14SHong Zhang Storage Information: 1668b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1669b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1670b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1671b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1672b5df2d14SHong Zhang 1673b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1674b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1675b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1676b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1677b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1678b5df2d14SHong Zhang 1679b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1680b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1681b5df2d14SHong Zhang 1682b5df2d14SHong Zhang .vb 1683b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1684b5df2d14SHong Zhang ------------------- 1685b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1686b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1687b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1688b5df2d14SHong Zhang ------------------- 1689b5df2d14SHong Zhang .ve 1690b5df2d14SHong Zhang 1691b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1692b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 1693b5df2d14SHong Zhang o (off-diagonal) submatrix. Note that the d and the o submatrices are 1694b5df2d14SHong Zhang stored simply in the MATSEQBAIJ format for compressed row storage. 1695b5df2d14SHong Zhang 1696b5df2d14SHong Zhang Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1697b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1698b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1699b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1700b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1701b5df2d14SHong Zhang matrices. 1702b5df2d14SHong Zhang 1703b5df2d14SHong Zhang Level: intermediate 1704b5df2d14SHong Zhang 1705b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1706b5df2d14SHong Zhang 1707b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1708b5df2d14SHong Zhang @*/ 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1711b5df2d14SHong Zhang { 1712b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1713eb7adc28SSatish Balay int ierr,i,mbs,Mbs; 1714273d9f13SBarry Smith PetscTruth flg2; 1715b5df2d14SHong Zhang 1716b5df2d14SHong Zhang PetscFunctionBegin; 1717273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr); 1718273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1719273d9f13SBarry Smith 1720b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1721b5df2d14SHong Zhang 1722b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1723435da068SBarry Smith if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1724435da068SBarry Smith if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1725435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1726435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1727b5df2d14SHong Zhang if (d_nnz) { 1728b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1729b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1730b5df2d14SHong Zhang } 1731b5df2d14SHong Zhang } 1732b5df2d14SHong Zhang if (o_nnz) { 1733b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1734b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1735b5df2d14SHong Zhang } 1736b5df2d14SHong Zhang } 173719138431SHong Zhang B->preallocated = PETSC_TRUE; 173819138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 173919138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 174019138431SHong Zhang ierr = MapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 174119138431SHong Zhang ierr = MapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1742b5df2d14SHong Zhang 1743b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1744b5df2d14SHong Zhang mbs = B->m/bs; 1745b5df2d14SHong Zhang Mbs = B->M/bs; 1746b5df2d14SHong Zhang if (mbs*bs != B->m) { 174719138431SHong Zhang SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1748b5df2d14SHong Zhang } 1749b5df2d14SHong Zhang 1750b5df2d14SHong Zhang b->bs = bs; 1751b5df2d14SHong Zhang b->bs2 = bs*bs; 1752b5df2d14SHong Zhang b->mbs = mbs; 1753b5df2d14SHong Zhang b->nbs = mbs; 1754b5df2d14SHong Zhang b->Mbs = Mbs; 1755b5df2d14SHong Zhang b->Nbs = Mbs; 1756b5df2d14SHong Zhang 1757b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1758b5df2d14SHong Zhang b->rowners[0] = 0; 1759b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1760b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1761b5df2d14SHong Zhang } 1762b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1763b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1764b5df2d14SHong Zhang b->cstart = b->rstart; 1765b5df2d14SHong Zhang b->cend = b->rend; 1766b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1767b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1768b5df2d14SHong Zhang } 1769b5df2d14SHong Zhang b->rstart_bs = b-> rstart*bs; 1770b5df2d14SHong Zhang b->rend_bs = b->rend*bs; 1771b5df2d14SHong Zhang 1772b5df2d14SHong Zhang b->cstart_bs = b->cstart*bs; 1773b5df2d14SHong Zhang b->cend_bs = b->cend*bs; 1774b5df2d14SHong Zhang 1775b5df2d14SHong Zhang 1776b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1777b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 1778b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1779b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 1780b5df2d14SHong Zhang 1781b5df2d14SHong Zhang /* build cache for off array entries formed */ 1782b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1783b5df2d14SHong Zhang 1784b5df2d14SHong Zhang PetscFunctionReturn(0); 1785b5df2d14SHong Zhang } 1786b5df2d14SHong Zhang 17874a2ae208SSatish Balay #undef __FUNCT__ 17884a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1789a30f8f8cSSatish Balay /*@C 1790a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1791a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1792a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1793a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1794a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1795a30f8f8cSSatish Balay 1796a30f8f8cSSatish Balay Collective on MPI_Comm 1797a30f8f8cSSatish Balay 1798a30f8f8cSSatish Balay Input Parameters: 1799a30f8f8cSSatish Balay + comm - MPI communicator 1800a30f8f8cSSatish Balay . bs - size of blockk 1801a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1802a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1803a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1804a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1805a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1806a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1807a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1808a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1809a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1810a30f8f8cSSatish Balay submatrix (same for all local rows) 1811a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1812a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1813a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1814a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1815a30f8f8cSSatish Balay submatrix (same for all local rows). 1816a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1817a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1818a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1819a30f8f8cSSatish Balay 1820a30f8f8cSSatish Balay Output Parameter: 1821a30f8f8cSSatish Balay . A - the matrix 1822a30f8f8cSSatish Balay 1823a30f8f8cSSatish Balay Options Database Keys: 1824a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1825a30f8f8cSSatish Balay block calculations (much slower) 1826a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1827a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1828a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1829a30f8f8cSSatish Balay 1830a30f8f8cSSatish Balay Notes: 1831a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1832a30f8f8cSSatish Balay (possibly both). 1833a30f8f8cSSatish Balay 1834a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1835a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1836a30f8f8cSSatish Balay 1837a30f8f8cSSatish Balay Storage Information: 1838a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1839a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1840a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1841a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1842a30f8f8cSSatish Balay 1843a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1844a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1845a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1846a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1847a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1848a30f8f8cSSatish Balay 1849a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1850a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1851a30f8f8cSSatish Balay 1852a30f8f8cSSatish Balay .vb 1853a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1854a30f8f8cSSatish Balay ------------------- 1855a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1856a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1857a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1858a30f8f8cSSatish Balay ------------------- 1859a30f8f8cSSatish Balay .ve 1860a30f8f8cSSatish Balay 1861a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1862a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1863a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1864a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1865a30f8f8cSSatish Balay 1866a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1867a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1868a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1869a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1870a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1871a30f8f8cSSatish Balay matrices. 1872a30f8f8cSSatish Balay 1873a30f8f8cSSatish Balay Level: intermediate 1874a30f8f8cSSatish Balay 1875a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1876a30f8f8cSSatish Balay 1877a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1878a30f8f8cSSatish Balay @*/ 1879a30f8f8cSSatish Balay 1880a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1881a30f8f8cSSatish Balay { 1882273d9f13SBarry Smith int ierr,size; 1883a30f8f8cSSatish Balay 1884a30f8f8cSSatish Balay PetscFunctionBegin; 1885b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1886273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1887273d9f13SBarry Smith if (size > 1) { 1888b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1889b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1890273d9f13SBarry Smith } else { 1891273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1892273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1893273d9f13SBarry Smith } 1894a30f8f8cSSatish Balay PetscFunctionReturn(0); 1895a30f8f8cSSatish Balay } 1896a30f8f8cSSatish Balay 1897a30f8f8cSSatish Balay 18984a2ae208SSatish Balay #undef __FUNCT__ 18994a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 1900a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1901a30f8f8cSSatish Balay { 1902a30f8f8cSSatish Balay Mat mat; 1903a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1904a30f8f8cSSatish Balay int ierr,len=0; 1905a30f8f8cSSatish Balay 1906a30f8f8cSSatish Balay PetscFunctionBegin; 1907a30f8f8cSSatish Balay *newmat = 0; 1908b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1909b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 1910273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1911b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1912a30f8f8cSSatish Balay a->bs = oldmat->bs; 1913a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1914a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1915a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1916a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1917a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1918a30f8f8cSSatish Balay 1919a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1920a30f8f8cSSatish Balay a->rend = oldmat->rend; 1921a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1922a30f8f8cSSatish Balay a->cend = oldmat->cend; 1923a30f8f8cSSatish Balay a->size = oldmat->size; 1924a30f8f8cSSatish Balay a->rank = oldmat->rank; 1925a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1926a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1927a30f8f8cSSatish Balay a->rowindices = 0; 1928a30f8f8cSSatish Balay a->rowvalues = 0; 1929a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1930a30f8f8cSSatish Balay a->barray = 0; 1931a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1932a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1933a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1934a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay /* hash table stuff */ 1937a30f8f8cSSatish Balay a->ht = 0; 1938a30f8f8cSSatish Balay a->hd = 0; 1939a30f8f8cSSatish Balay a->ht_size = 0; 1940a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1941a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1942a30f8f8cSSatish Balay a->ht_total_ct = 0; 1943a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1944a30f8f8cSSatish Balay 194582502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 1946b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1947a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1948a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1949a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1950a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1951a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1952a30f8f8cSSatish Balay if (oldmat->colmap) { 1953a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1954a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1955a30f8f8cSSatish Balay #else 195682502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 1957b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1958a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1959a30f8f8cSSatish Balay #endif 1960a30f8f8cSSatish Balay } else a->colmap = 0; 1961a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 196282502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 1963b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 1964a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1965a30f8f8cSSatish Balay } else a->garray = 0; 1966a30f8f8cSSatish Balay 1967a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1968b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 1969a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1970a30f8f8cSSatish Balay 1971b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 1972a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1973b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 1974a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1975b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 1976b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1977a30f8f8cSSatish Balay *newmat = mat; 1978a30f8f8cSSatish Balay PetscFunctionReturn(0); 1979a30f8f8cSSatish Balay } 1980a30f8f8cSSatish Balay 1981a30f8f8cSSatish Balay #include "petscsys.h" 1982a30f8f8cSSatish Balay 1983273d9f13SBarry Smith EXTERN_C_BEGIN 19844a2ae208SSatish Balay #undef __FUNCT__ 19854a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 1986b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 1987a30f8f8cSSatish Balay { 1988a30f8f8cSSatish Balay Mat A; 1989a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 1990a30f8f8cSSatish Balay Scalar *vals,*buf; 1991a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1992a30f8f8cSSatish Balay MPI_Status status; 1993a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1994a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 1995a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 1996a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 1997a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay PetscFunctionBegin; 2000b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2003a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2004a30f8f8cSSatish Balay if (!rank) { 2005b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2006a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 200729bbc08cSBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2008a30f8f8cSSatish Balay if (header[3] < 0) { 200929bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2010a30f8f8cSSatish Balay } 2011a30f8f8cSSatish Balay } 2012a30f8f8cSSatish Balay 2013a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2014a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2015a30f8f8cSSatish Balay 201629bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay /* 2019a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2020a30f8f8cSSatish Balay divisible by the blocksize 2021a30f8f8cSSatish Balay */ 2022a30f8f8cSSatish Balay Mbs = M/bs; 2023a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2024a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2025a30f8f8cSSatish Balay else Mbs++; 2026a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2027b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2028a30f8f8cSSatish Balay } 2029a30f8f8cSSatish Balay 2030a30f8f8cSSatish Balay /* determine ownership of all rows */ 2031a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2032a30f8f8cSSatish Balay m = mbs*bs; 2033b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2034a30f8f8cSSatish Balay browners = rowners + size + 1; 2035a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2036a30f8f8cSSatish Balay rowners[0] = 0; 2037a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2038a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2039a30f8f8cSSatish Balay rstart = rowners[rank]; 2040a30f8f8cSSatish Balay rend = rowners[rank+1]; 2041a30f8f8cSSatish Balay 2042a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 204382502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2044a30f8f8cSSatish Balay if (!rank) { 2045b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2046a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2047a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 204882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2049a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2050a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2051a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2052a30f8f8cSSatish Balay } else { 2053a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2054a30f8f8cSSatish Balay } 2055a30f8f8cSSatish Balay 20560222edb1SHong Zhang if (!rank) { /* procs[0] */ 2057a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 205882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2059a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2060a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2061a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2062a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2063a30f8f8cSSatish Balay } 2064a30f8f8cSSatish Balay } 2065a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2066a30f8f8cSSatish Balay 2067a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2068a30f8f8cSSatish Balay maxnz = 0; 2069a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2070a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2071a30f8f8cSSatish Balay } 207282502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2073a30f8f8cSSatish Balay 2074a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2075a30f8f8cSSatish Balay nz = procsnz[0]; 207682502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2077a30f8f8cSSatish Balay mycols = ibuf; 2078a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2079a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2080a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2081a30f8f8cSSatish Balay 2082a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2083a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2084a30f8f8cSSatish Balay nz = procsnz[i]; 2085a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2086a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2087a30f8f8cSSatish Balay } 2088a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2089a30f8f8cSSatish Balay if (size != 1) { 2090a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2091a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2092a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2093a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2094a30f8f8cSSatish Balay } 2095a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20960222edb1SHong Zhang } else { /* procs[i], i>0 */ 2097a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2098a30f8f8cSSatish Balay nz = 0; 2099a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2100a30f8f8cSSatish Balay nz += locrowlens[i]; 2101a30f8f8cSSatish Balay } 210282502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay mycols = ibuf; 2104a30f8f8cSSatish Balay /* receive message of column indices*/ 2105a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 210729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2108a30f8f8cSSatish Balay } 2109a30f8f8cSSatish Balay 2110a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 211182502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2112a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 211382502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2114a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2115a30f8f8cSSatish Balay masked1 = mask + Mbs; 2116a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2117a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2118a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2119a30f8f8cSSatish Balay dcount = 0; 2120a30f8f8cSSatish Balay odcount = 0; 2121a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2122a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2123a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21240222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2125a30f8f8cSSatish Balay if (!mask[tmp]) { 2126a30f8f8cSSatish Balay mask[tmp] = 1; 21270222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21280222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2129a30f8f8cSSatish Balay } 2130a30f8f8cSSatish Balay } 2131a30f8f8cSSatish Balay rowcount++; 2132a30f8f8cSSatish Balay } 2133a30f8f8cSSatish Balay 21340222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21350222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2136a30f8f8cSSatish Balay 2137a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2138a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2139a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2140a30f8f8cSSatish Balay } 2141a30f8f8cSSatish Balay 2142a30f8f8cSSatish Balay /* create our matrix */ 21437e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2144bfe19f1aSHong Zhang CHKERRQ(ierr); 2145a30f8f8cSSatish Balay A = *newmat; 2146273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2147a30f8f8cSSatish Balay 2148a30f8f8cSSatish Balay if (!rank) { 214982502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(Scalar),&buf);CHKERRQ(ierr); 2150a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2151a30f8f8cSSatish Balay nz = procsnz[0]; 2152a30f8f8cSSatish Balay vals = buf; 2153a30f8f8cSSatish Balay mycols = ibuf; 2154a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2155a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2157a30f8f8cSSatish Balay 2158a30f8f8cSSatish Balay /* insert into matrix */ 2159a30f8f8cSSatish Balay jj = rstart*bs; 2160a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21617e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2162a30f8f8cSSatish Balay mycols += locrowlens[i]; 2163a30f8f8cSSatish Balay vals += locrowlens[i]; 2164a30f8f8cSSatish Balay jj++; 2165a30f8f8cSSatish Balay } 21667e06b45fSHong Zhang 2167a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2168a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2169a30f8f8cSSatish Balay nz = procsnz[i]; 2170a30f8f8cSSatish Balay vals = buf; 2171a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay } 2174a30f8f8cSSatish Balay /* the last proc */ 2175a30f8f8cSSatish Balay if (size != 1){ 2176a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2177a30f8f8cSSatish Balay vals = buf; 2178a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2180a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2181a30f8f8cSSatish Balay } 2182a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21837e06b45fSHong Zhang 2184a30f8f8cSSatish Balay } else { 2185a30f8f8cSSatish Balay /* receive numeric values */ 218682502324SSatish Balay ierr = PetscMalloc(nz*sizeof(Scalar),&buf);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay 2188a30f8f8cSSatish Balay /* receive message of values*/ 2189a30f8f8cSSatish Balay vals = buf; 2190a30f8f8cSSatish Balay mycols = ibuf; 2191a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 219329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2194a30f8f8cSSatish Balay 2195a30f8f8cSSatish Balay /* insert into matrix */ 2196a30f8f8cSSatish Balay jj = rstart*bs; 2197a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2198a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay mycols += locrowlens[i]; 2200a30f8f8cSSatish Balay vals += locrowlens[i]; 2201a30f8f8cSSatish Balay jj++; 2202a30f8f8cSSatish Balay } 2203a30f8f8cSSatish Balay } 22047e06b45fSHong Zhang 2205a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2206a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay PetscFunctionReturn(0); 2214a30f8f8cSSatish Balay } 2215273d9f13SBarry Smith EXTERN_C_END 2216a30f8f8cSSatish Balay 22174a2ae208SSatish Balay #undef __FUNCT__ 22184a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2219a30f8f8cSSatish Balay /*@ 2220a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2221a30f8f8cSSatish Balay 2222a30f8f8cSSatish Balay Input Parameters: 2223a30f8f8cSSatish Balay . mat - the matrix 2224a30f8f8cSSatish Balay . fact - factor 2225a30f8f8cSSatish Balay 2226a30f8f8cSSatish Balay Collective on Mat 2227a30f8f8cSSatish Balay 2228a30f8f8cSSatish Balay Level: advanced 2229a30f8f8cSSatish Balay 2230a30f8f8cSSatish Balay Notes: 2231a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2232a30f8f8cSSatish Balay 2233a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2234a30f8f8cSSatish Balay 2235a30f8f8cSSatish Balay .seealso: MatSetOption() 2236a30f8f8cSSatish Balay @*/ 2237a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2238a30f8f8cSSatish Balay { 2239a30f8f8cSSatish Balay PetscFunctionBegin; 224029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 224196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2242a30f8f8cSSatish Balay } 224324d5174aSHong Zhang 22444a2ae208SSatish Balay #undef __FUNCT__ 22454a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 224624d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 224724d5174aSHong Zhang { 224824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2249f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2250ca54ac64SHong Zhang PetscReal atmp; 2251ca54ac64SHong Zhang double *work,*svalues,*rvalues; 2252ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2253154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 22548a1c53f2SBarry Smith Scalar *va; 22558a1c53f2SBarry Smith MatScalar *ba; 2256f4c0e9e4SHong Zhang MPI_Status stat; 225724d5174aSHong Zhang 225824d5174aSHong Zhang PetscFunctionBegin; 2259d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2260f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2261f4c0e9e4SHong Zhang 2262ac355199SBarry Smith ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 2263ac355199SBarry Smith ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 2264f4c0e9e4SHong Zhang 2265f4c0e9e4SHong Zhang bs = a->bs; 2266f4c0e9e4SHong Zhang mbs = a->mbs; 2267f4c0e9e4SHong Zhang Mbs = a->Mbs; 2268f4c0e9e4SHong Zhang ba = b->a; 2269f4c0e9e4SHong Zhang bi = b->i; 2270f4c0e9e4SHong Zhang bj = b->j; 2271ca54ac64SHong Zhang /* 2272f4c0e9e4SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 2273f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2274ca54ac64SHong Zhang */ 2275f4c0e9e4SHong Zhang 2276f4c0e9e4SHong Zhang /* find ownerships */ 2277f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2278f4c0e9e4SHong Zhang /* 227904d41228SHong Zhang if (!rank){ 228004d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2281f4c0e9e4SHong Zhang } 2282f4c0e9e4SHong Zhang */ 2283f4c0e9e4SHong Zhang 2284f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 228582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2286ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2287f4c0e9e4SHong Zhang 2288f4c0e9e4SHong Zhang /* row_max for B */ 2289b8475685SHong Zhang if (rank != size-1){ 2290f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2291f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2292f4c0e9e4SHong Zhang brow = bs*i; 2293f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2294f4c0e9e4SHong Zhang bcol = bs*(*bj); 2295f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2296ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 229704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2298ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2299f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2300f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2301ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2302f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2303ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2304f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2305f4c0e9e4SHong Zhang } 2306f4c0e9e4SHong Zhang } 2307f4c0e9e4SHong Zhang bj++; 2308f4c0e9e4SHong Zhang } 2309f4c0e9e4SHong Zhang } 231004d41228SHong Zhang /* 231104d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 231204d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 231304d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 231404d41228SHong Zhang */ 2315f4c0e9e4SHong Zhang 2316f4c0e9e4SHong Zhang /* send values to its owners */ 2317f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2318f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2319ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2320273d9f13SBarry Smith ierr = MPI_Send(svalues,count,MPI_DOUBLE,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr); 2321ca54ac64SHong Zhang /* 232204d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 2323f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2324ca54ac64SHong Zhang */ 2325ca54ac64SHong Zhang } 2326f4c0e9e4SHong Zhang } 2327f4c0e9e4SHong Zhang 2328f4c0e9e4SHong Zhang /* receive values */ 2329ca54ac64SHong Zhang if (rank){ 2330f4c0e9e4SHong Zhang rvalues = work; 2331ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2332f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 2333154bba0bSHong Zhang ierr = MPI_Recv(rvalues,count,MPI_DOUBLE,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr); 2334f4c0e9e4SHong Zhang /* process values */ 2335f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2336ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2337f4c0e9e4SHong Zhang } 2338ca54ac64SHong Zhang /* 233904d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 2340f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2341ca54ac64SHong Zhang */ 2342f4c0e9e4SHong Zhang } 2343ca54ac64SHong Zhang } 2344f4c0e9e4SHong Zhang 2345f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2346ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 234724d5174aSHong Zhang PetscFunctionReturn(0); 234824d5174aSHong Zhang } 2349