xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision e9f7bc9ebdb6b7145bf88dbdd2c0c400f06b4c30)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
51dfbe8321SBarry Smith   PetscErrorCode ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
66dfbe8321SBarry Smith   PetscErrorCode ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay 
76a30f8f8cSSatish Balay #define CHUNKSIZE  10
77a30f8f8cSSatish Balay 
78a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
79a30f8f8cSSatish Balay { \
80a30f8f8cSSatish Balay  \
81a30f8f8cSSatish Balay     brow = row/bs;  \
82a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
83a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
84a30f8f8cSSatish Balay       bcol = col/bs; \
85a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
86a30f8f8cSSatish Balay       low = 0; high = nrow; \
87a30f8f8cSSatish Balay       while (high-low > 3) { \
88a30f8f8cSSatish Balay         t = (low+high)/2; \
89a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
90a30f8f8cSSatish Balay         else              low  = t; \
91a30f8f8cSSatish Balay       } \
92a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
93a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
94a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
95a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
96a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
97a30f8f8cSSatish Balay           else                    *bap  = value;  \
98a30f8f8cSSatish Balay           goto a_noinsert; \
99a30f8f8cSSatish Balay         } \
100a30f8f8cSSatish Balay       } \
101a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
102085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
103e6b907acSBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew); \
104a30f8f8cSSatish Balay       N = nrow++ - 1;  \
105a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
106a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
107a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
108a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
109a30f8f8cSSatish Balay       } \
110a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
111a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
112a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
113a30f8f8cSSatish Balay       a_noinsert:; \
114a30f8f8cSSatish Balay     ailen[brow] = nrow; \
115a30f8f8cSSatish Balay }
116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
117a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
118a30f8f8cSSatish Balay { \
119a30f8f8cSSatish Balay     brow = row/bs;  \
120a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
121a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
122a30f8f8cSSatish Balay       bcol = col/bs; \
123a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
124a30f8f8cSSatish Balay       low = 0; high = nrow; \
125a30f8f8cSSatish Balay       while (high-low > 3) { \
126a30f8f8cSSatish Balay         t = (low+high)/2; \
127a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
128a30f8f8cSSatish Balay         else              low  = t; \
129a30f8f8cSSatish Balay       } \
130a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
131a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
132a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
133a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
134a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
135a30f8f8cSSatish Balay           else                    *bap  = value;  \
136a30f8f8cSSatish Balay           goto b_noinsert; \
137a30f8f8cSSatish Balay         } \
138a30f8f8cSSatish Balay       } \
139a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
140085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
141e6b907acSBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew); \
142a30f8f8cSSatish Balay       N = nrow++ - 1;  \
143a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
144a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
145a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
146a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
149a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
150a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
151a30f8f8cSSatish Balay       b_noinsert:; \
152a30f8f8cSSatish Balay     bilen[brow] = nrow; \
153a30f8f8cSSatish Balay }
154a30f8f8cSSatish Balay #endif
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1574a2ae208SSatish Balay #undef __FUNCT__
1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
160a30f8f8cSSatish Balay {
161a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
162dfbe8321SBarry Smith   PetscErrorCode ierr;
1631302d50aSBarry Smith   PetscInt       i,N = m*n;
164a30f8f8cSSatish Balay   MatScalar      *vsingle;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
16805b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
16982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
170a30f8f8cSSatish Balay     b->setvalueslen  = N;
171a30f8f8cSSatish Balay   }
172a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
173a30f8f8cSSatish Balay 
174a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
175a30f8f8cSSatish Balay     vsingle[i] = v[i];
176a30f8f8cSSatish Balay   }
177a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
178a30f8f8cSSatish Balay   PetscFunctionReturn(0);
179a30f8f8cSSatish Balay }
180a30f8f8cSSatish Balay 
1814a2ae208SSatish Balay #undef __FUNCT__
1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
184a30f8f8cSSatish Balay {
185a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
186dfbe8321SBarry Smith   PetscErrorCode ierr;
1871302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
188a30f8f8cSSatish Balay   MatScalar      *vsingle;
189a30f8f8cSSatish Balay 
190a30f8f8cSSatish Balay   PetscFunctionBegin;
191a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
19205b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
19382502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
194a30f8f8cSSatish Balay     b->setvalueslen  = N;
195a30f8f8cSSatish Balay   }
196a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
197a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
198a30f8f8cSSatish Balay     vsingle[i] = v[i];
199a30f8f8cSSatish Balay   }
200a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
201a30f8f8cSSatish Balay   PetscFunctionReturn(0);
202a30f8f8cSSatish Balay }
203a30f8f8cSSatish Balay #endif
204a30f8f8cSSatish Balay 
205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
206a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
207a30f8f8cSSatish Balay */
2084a2ae208SSatish Balay #undef __FUNCT__
209be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar"
2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
211a30f8f8cSSatish Balay {
212a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
213a30f8f8cSSatish Balay   MatScalar      value;
214b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
215dfbe8321SBarry Smith   PetscErrorCode ierr;
2161302d50aSBarry Smith   PetscInt       i,j,row,col;
217899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
218899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
219899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
220a30f8f8cSSatish Balay 
221a30f8f8cSSatish Balay   /* Some Variables required in the macro */
222a30f8f8cSSatish Balay   Mat            A = baij->A;
223a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2241302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
225a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
226a30f8f8cSSatish Balay 
227a30f8f8cSSatish Balay   Mat            B = baij->B;
228a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2291302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
230a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
231a30f8f8cSSatish Balay 
2321302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2331302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
234a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
235a30f8f8cSSatish Balay 
236a30f8f8cSSatish Balay   /* for stash */
237910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
238910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
239a30f8f8cSSatish Balay 
240a30f8f8cSSatish Balay   PetscFunctionBegin;
241a30f8f8cSSatish Balay 
242a30f8f8cSSatish Balay   if (!baij->donotstash){
24359ffdab8SBarry Smith     if (n > baij->n_loc) {
24459ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24559ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
24659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
24759ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
24859ffdab8SBarry Smith       baij->n_loc = n;
24959ffdab8SBarry Smith     }
25059ffdab8SBarry Smith     in_loc = baij->in_loc;
25159ffdab8SBarry Smith     v_loc  = baij->v_loc;
252a30f8f8cSSatish Balay   }
253a30f8f8cSSatish Balay 
254a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
255a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2562515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
257899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
258a30f8f8cSSatish Balay #endif
259a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
260a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
261a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
26301b2bd88SHong Zhang           if (a->ignore_ltriangular){
26401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26501b2bd88SHong Zhang           } else {
26601b2bd88SHong Zhang             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)");
26701b2bd88SHong Zhang           }
26801b2bd88SHong Zhang         }
269a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
270a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
271a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
272a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
273a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
274a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
275a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
276a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2772515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
278899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
279a30f8f8cSSatish Balay #endif
280a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
281a30f8f8cSSatish Balay           if (mat->was_assembled) {
282a30f8f8cSSatish Balay             if (!baij->colmap) {
283653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
284a30f8f8cSSatish Balay             }
285a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
286a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28771730473SSatish Balay             col  = col - 1;
288a30f8f8cSSatish Balay #else
28971730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
290a30f8f8cSSatish Balay #endif
291a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
292a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
293a30f8f8cSSatish Balay               col =  in[j];
294a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
295a30f8f8cSSatish Balay               B = baij->B;
296a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
297a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
298a30f8f8cSSatish Balay               ba=b->a;
29971730473SSatish Balay             } else col += in[j]%bs;
300a30f8f8cSSatish Balay           } else col = in[j];
301a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
302a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
303a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
304a30f8f8cSSatish Balay         }
305a30f8f8cSSatish Balay       }
306a30f8f8cSSatish Balay     } else {  /* off processor entry */
307a30f8f8cSSatish Balay       if (!baij->donotstash) {
308a30f8f8cSSatish Balay         n_loc = 0;
309a30f8f8cSSatish Balay         for (j=0; j<n; j++){
310f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
311a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
312a30f8f8cSSatish Balay           if (roworiented) {
313a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
314a30f8f8cSSatish Balay           } else {
315a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
316a30f8f8cSSatish Balay           }
317a30f8f8cSSatish Balay           n_loc++;
318a30f8f8cSSatish Balay         }
319a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
320a30f8f8cSSatish Balay       }
321a30f8f8cSSatish Balay     }
322a30f8f8cSSatish Balay   }
323a30f8f8cSSatish Balay   PetscFunctionReturn(0);
324a30f8f8cSSatish Balay }
325a30f8f8cSSatish Balay 
3264a2ae208SSatish Balay #undef __FUNCT__
327e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3281302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
329a30f8f8cSSatish Balay {
3300880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
331f15d580aSBarry Smith   const MatScalar *value;
332f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3330880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
334dfbe8321SBarry Smith   PetscErrorCode  ierr;
335899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
336899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
337899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
3380880e062SHong Zhang 
339a30f8f8cSSatish Balay   PetscFunctionBegin;
3400880e062SHong Zhang   if(!barray) {
3410880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3420880e062SHong Zhang     baij->barray = barray;
3430880e062SHong Zhang   }
3440880e062SHong Zhang 
3450880e062SHong Zhang   if (roworiented) {
3460880e062SHong Zhang     stepval = (n-1)*bs;
3470880e062SHong Zhang   } else {
3480880e062SHong Zhang     stepval = (m-1)*bs;
3490880e062SHong Zhang   }
3500880e062SHong Zhang   for (i=0; i<m; i++) {
3510880e062SHong Zhang     if (im[i] < 0) continue;
3522515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
35377431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3540880e062SHong Zhang #endif
3550880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3560880e062SHong Zhang       row = im[i] - rstart;
3570880e062SHong Zhang       for (j=0; j<n; j++) {
3580880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3590880e062SHong Zhang         if ((roworiented) && (n == 1)) {
360f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3610880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
362f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3630880e062SHong Zhang         } else { /* Here a copy is required */
3640880e062SHong Zhang           if (roworiented) {
3650880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3660880e062SHong Zhang           } else {
3670880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3680880e062SHong Zhang           }
3690880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3700880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3710880e062SHong Zhang               *barray++  = *value++;
3720880e062SHong Zhang             }
3730880e062SHong Zhang           }
3740880e062SHong Zhang           barray -=bs2;
3750880e062SHong Zhang         }
3760880e062SHong Zhang 
3770880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3780880e062SHong Zhang           col  = in[j] - cstart;
3790880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3800880e062SHong Zhang         }
3810880e062SHong Zhang         else if (in[j] < 0) continue;
3822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
38377431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3840880e062SHong Zhang #endif
3850880e062SHong Zhang         else {
3860880e062SHong Zhang           if (mat->was_assembled) {
3870880e062SHong Zhang             if (!baij->colmap) {
388653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3890880e062SHong Zhang             }
3900880e062SHong Zhang 
3912515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3920880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3931302d50aSBarry Smith             { PetscInt data;
3940880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3950880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3960880e062SHong Zhang             }
3970880e062SHong Zhang #else
3980880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3990880e062SHong Zhang #endif
4000880e062SHong Zhang #endif
4010880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4020880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4030880e062SHong Zhang             col  = (col - 1)/bs;
4040880e062SHong Zhang #else
4050880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4060880e062SHong Zhang #endif
4070880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4080880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4090880e062SHong Zhang               col =  in[j];
4100880e062SHong Zhang             }
4110880e062SHong Zhang           }
4120880e062SHong Zhang           else col = in[j];
413e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4140880e062SHong Zhang         }
4150880e062SHong Zhang       }
4160880e062SHong Zhang     } else {
4170880e062SHong Zhang       if (!baij->donotstash) {
4180880e062SHong Zhang         if (roworiented) {
4190880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4200880e062SHong Zhang         } else {
4210880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4220880e062SHong Zhang         }
4230880e062SHong Zhang       }
4240880e062SHong Zhang     }
4250880e062SHong Zhang   }
4260880e062SHong Zhang   PetscFunctionReturn(0);
427a30f8f8cSSatish Balay }
428a30f8f8cSSatish Balay 
4294a2ae208SSatish Balay #undef __FUNCT__
4304a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4311302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
432a30f8f8cSSatish Balay {
433f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4346849ba73SBarry Smith   PetscErrorCode ierr;
435899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
436899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
437a30f8f8cSSatish Balay 
438a30f8f8cSSatish Balay   PetscFunctionBegin;
439a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
44077431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
441899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
442a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
443a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
444a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
44577431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
446899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
447a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
448a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
449c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
450a30f8f8cSSatish Balay         } else {
451a30f8f8cSSatish Balay           if (!baij->colmap) {
452653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
453a30f8f8cSSatish Balay           }
454a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
455a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
456a30f8f8cSSatish Balay           data --;
457a30f8f8cSSatish Balay #else
458a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
459a30f8f8cSSatish Balay #endif
460a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
461a30f8f8cSSatish Balay           else {
462a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
463e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
464a30f8f8cSSatish Balay           }
465a30f8f8cSSatish Balay         }
466a30f8f8cSSatish Balay       }
467a30f8f8cSSatish Balay     } else {
46829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
469a30f8f8cSSatish Balay     }
470a30f8f8cSSatish Balay   }
471a30f8f8cSSatish Balay  PetscFunctionReturn(0);
472a30f8f8cSSatish Balay }
473a30f8f8cSSatish Balay 
4744a2ae208SSatish Balay #undef __FUNCT__
4754a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
476dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
477a30f8f8cSSatish Balay {
478a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
479dfbe8321SBarry Smith   PetscErrorCode ierr;
480a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
481a30f8f8cSSatish Balay 
482a30f8f8cSSatish Balay   PetscFunctionBegin;
483a30f8f8cSSatish Balay   if (baij->size == 1) {
484a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
485a30f8f8cSSatish Balay   } else {
486a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
487f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
488a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
489a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
490a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
491a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
492d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
493a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
494a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4950b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4960b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4970b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4980b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
499899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
500899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
5010b8dc8d2SHong Zhang       MatScalar    *v;
5020b8dc8d2SHong Zhang 
503899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
504899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
505899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
5060b8dc8d2SHong Zhang       /* Amat */
5070b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5080b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5090b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5100b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5110b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5120b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5130b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5140b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5150b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5160b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5170b8dc8d2SHong Zhang               /* non-diagonal block */
5180b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5190b8dc8d2SHong Zhang             }
5200b8dc8d2SHong Zhang           }
5210b8dc8d2SHong Zhang         }
5220b8dc8d2SHong Zhang       }
5230b8dc8d2SHong Zhang       /* Bmat */
5240b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5250b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5260b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5270b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5280b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5290b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5300b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5310b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5320b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5330b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5340b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5350b8dc8d2SHong Zhang             }
5360b8dc8d2SHong Zhang           }
5370b8dc8d2SHong Zhang         }
5380b8dc8d2SHong Zhang       }
539899cda47SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5400b8dc8d2SHong Zhang       *norm = 0.0;
541899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
5420b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5430b8dc8d2SHong Zhang       }
5440b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
545a30f8f8cSSatish Balay     } else {
54629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
547a30f8f8cSSatish Balay     }
548a30f8f8cSSatish Balay   }
549a30f8f8cSSatish Balay   PetscFunctionReturn(0);
550a30f8f8cSSatish Balay }
551a30f8f8cSSatish Balay 
5524a2ae208SSatish Balay #undef __FUNCT__
5534a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
554dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
555a30f8f8cSSatish Balay {
556a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
557dfbe8321SBarry Smith   PetscErrorCode ierr;
5581302d50aSBarry Smith   PetscInt       nstash,reallocs;
559a30f8f8cSSatish Balay   InsertMode     addv;
560a30f8f8cSSatish Balay 
561a30f8f8cSSatish Balay   PetscFunctionBegin;
562a30f8f8cSSatish Balay   if (baij->donotstash) {
563a30f8f8cSSatish Balay     PetscFunctionReturn(0);
564a30f8f8cSSatish Balay   }
565a30f8f8cSSatish Balay 
566a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
567a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
568a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
572a30f8f8cSSatish Balay 
573899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
574899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
575a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
576ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
577a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
578ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
579a30f8f8cSSatish Balay   PetscFunctionReturn(0);
580a30f8f8cSSatish Balay }
581a30f8f8cSSatish Balay 
5824a2ae208SSatish Balay #undef __FUNCT__
5834a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
584dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
585a30f8f8cSSatish Balay {
586a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
587a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5886849ba73SBarry Smith   PetscErrorCode ierr;
58913f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5901302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
59113f74950SBarry Smith   PetscMPIInt    n;
592a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
593a30f8f8cSSatish Balay   MatScalar      *val;
594a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
595a30f8f8cSSatish Balay 
59691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay 
599a30f8f8cSSatish Balay   if (!baij->donotstash) {
600a30f8f8cSSatish Balay     while (1) {
601a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
602a30f8f8cSSatish Balay       if (!flg) break;
603a30f8f8cSSatish Balay 
604a30f8f8cSSatish Balay       for (i=0; i<n;) {
605a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
606a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
607a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
608a30f8f8cSSatish Balay         else       ncols = n-i;
609a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
610a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
611a30f8f8cSSatish Balay         i = j;
612a30f8f8cSSatish Balay       }
613a30f8f8cSSatish Balay     }
614a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
615a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
616a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
617a30f8f8cSSatish Balay        restore the original flags */
618a30f8f8cSSatish Balay     r1 = baij->roworiented;
619a30f8f8cSSatish Balay     r2 = a->roworiented;
62091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
621a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
622a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
62391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
624a30f8f8cSSatish Balay     while (1) {
625a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       if (!flg) break;
627a30f8f8cSSatish Balay 
628a30f8f8cSSatish Balay       for (i=0; i<n;) {
629a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
630a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
631a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
632a30f8f8cSSatish Balay         else       ncols = n-i;
633a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
634a30f8f8cSSatish Balay         i = j;
635a30f8f8cSSatish Balay       }
636a30f8f8cSSatish Balay     }
637a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
638a30f8f8cSSatish Balay     baij->roworiented = r1;
639a30f8f8cSSatish Balay     a->roworiented    = r2;
64091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
641a30f8f8cSSatish Balay   }
642a30f8f8cSSatish Balay 
643a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
644a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
645a30f8f8cSSatish Balay 
646a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
647a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
648a30f8f8cSSatish Balay   /*
649a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
650a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
651a30f8f8cSSatish Balay   */
652a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
653a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
654a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
655c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
656a30f8f8cSSatish Balay     }
657a30f8f8cSSatish Balay   }
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
66040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
661a30f8f8cSSatish Balay   }
66291c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
663a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
664a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
665a30f8f8cSSatish Balay 
666a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
667a30f8f8cSSatish Balay   baij->rowvalues = 0;
6685222a1afSHong Zhang 
669a30f8f8cSSatish Balay   PetscFunctionReturn(0);
670a30f8f8cSSatish Balay }
671a30f8f8cSSatish Balay 
6724a2ae208SSatish Balay #undef __FUNCT__
6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
675a30f8f8cSSatish Balay {
676a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
677dfbe8321SBarry Smith   PetscErrorCode    ierr;
678899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6791302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
68032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
681b0a32e0cSBarry Smith   PetscViewer       sviewer;
682f3ef73ceSBarry Smith   PetscViewerFormat format;
683a30f8f8cSSatish Balay 
684a30f8f8cSSatish Balay   PetscFunctionBegin;
68532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
686fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68732077d6dSBarry Smith   if (iascii) {
688b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
689456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
690a30f8f8cSSatish Balay       MatInfo info;
691a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
694899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
695899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
698a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
700b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
701a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
702a30f8f8cSSatish Balay       PetscFunctionReturn(0);
703fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
70477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
705a30f8f8cSSatish Balay       PetscFunctionReturn(0);
706c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
707c1490034SHong Zhang       PetscFunctionReturn(0);
708a30f8f8cSSatish Balay     }
709a30f8f8cSSatish Balay   }
710a30f8f8cSSatish Balay 
711a30f8f8cSSatish Balay   if (isdraw) {
712b0a32e0cSBarry Smith     PetscDraw  draw;
713a30f8f8cSSatish Balay     PetscTruth isnull;
714b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
715b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay 
718a30f8f8cSSatish Balay   if (size == 1) {
719e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
721a30f8f8cSSatish Balay   } else {
722a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
723a30f8f8cSSatish Balay     Mat          A;
72465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
72565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
726899cda47SBarry Smith     PetscInt     M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
727a30f8f8cSSatish Balay     MatScalar    *a;
728a30f8f8cSSatish Balay 
729f204ca49SKris Buschelman     /* Should this be the same type as mat? */
730f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
731a30f8f8cSSatish Balay     if (!rank) {
732f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
733a30f8f8cSSatish Balay     } else {
734f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
735a30f8f8cSSatish Balay     }
736f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
737899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
739a30f8f8cSSatish Balay 
740a30f8f8cSSatish Balay     /* copy over the A part */
74165d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
742a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7431302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
744a30f8f8cSSatish Balay 
745a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
746*e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
747a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
748a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
749*e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
750a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
751a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
752a30f8f8cSSatish Balay           col++; a += bs;
753a30f8f8cSSatish Balay         }
754a30f8f8cSSatish Balay       }
755a30f8f8cSSatish Balay     }
756a30f8f8cSSatish Balay     /* copy over the B part */
75765d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75865d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
759a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
760*e9f7bc9eSHong Zhang 
761*e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
762a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
763a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
764a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
765a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
766*e9f7bc9eSHong Zhang           ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
767a30f8f8cSSatish Balay           col++; a += bs;
768a30f8f8cSSatish Balay         }
769a30f8f8cSSatish Balay       }
770a30f8f8cSSatish Balay     }
771a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
773a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
774a30f8f8cSSatish Balay     /*
775a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
776b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
777a30f8f8cSSatish Balay     */
778b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
77965d70643SHong Zhang     if (!rank) {
780e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
781a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
782a30f8f8cSSatish Balay     }
783b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
784a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   }
786a30f8f8cSSatish Balay   PetscFunctionReturn(0);
787a30f8f8cSSatish Balay }
788a30f8f8cSSatish Balay 
7894a2ae208SSatish Balay #undef __FUNCT__
7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
791dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
792a30f8f8cSSatish Balay {
793dfbe8321SBarry Smith   PetscErrorCode ierr;
79432077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
795a30f8f8cSSatish Balay 
796a30f8f8cSSatish Balay   PetscFunctionBegin;
79732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
798fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
799b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
800fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
80132077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
802a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
803a30f8f8cSSatish Balay   } else {
8041302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
805a30f8f8cSSatish Balay   }
806a30f8f8cSSatish Balay   PetscFunctionReturn(0);
807a30f8f8cSSatish Balay }
808a30f8f8cSSatish Balay 
8094a2ae208SSatish Balay #undef __FUNCT__
8104a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
811dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
812a30f8f8cSSatish Balay {
813a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
814dfbe8321SBarry Smith   PetscErrorCode ierr;
815a30f8f8cSSatish Balay 
816a30f8f8cSSatish Balay   PetscFunctionBegin;
817a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
818899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
819a30f8f8cSSatish Balay #endif
820a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
821a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
822a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
823a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
824a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
825a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
826a30f8f8cSSatish Balay #else
82705b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
828a30f8f8cSSatish Balay #endif
82905b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
830a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
831a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
83240781036SHong Zhang   if (baij->slvec0) {
83340781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
83440781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
83540781036SHong Zhang   }
83640781036SHong Zhang   if (baij->slvec1) {
83740781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83840781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83940781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
84040781036SHong Zhang   }
84140781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
84205b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
84305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
84405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
845a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
84605b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
847a30f8f8cSSatish Balay #endif
84859ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
84959ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
850899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
851a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
852901853e0SKris Buschelman 
853901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
854901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
855901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
856901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
857a30f8f8cSSatish Balay   PetscFunctionReturn(0);
858a30f8f8cSSatish Balay }
859a30f8f8cSSatish Balay 
8604a2ae208SSatish Balay #undef __FUNCT__
861a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
862dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
863a9d4b620SHong Zhang {
864a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
865dfbe8321SBarry Smith   PetscErrorCode ierr;
866899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
867a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
868a9d4b620SHong Zhang 
869a9d4b620SHong Zhang   PetscFunctionBegin;
870a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
871899cda47SBarry Smith   if (nt != A->cmap.n) {
872a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
873a9d4b620SHong Zhang   }
874a9d4b620SHong Zhang 
875a9d4b620SHong Zhang   /* diagonal part */
876a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8772dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
878a9d4b620SHong Zhang 
879a9d4b620SHong Zhang   /* subdiagonal part */
880a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
881899cda47SBarry Smith   CHKMEMQ;
882a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8831ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8841ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
885899cda47SBarry Smith   CHKMEMQ;
886a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
887899cda47SBarry Smith   CHKMEMQ;
8881ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
889a9d4b620SHong Zhang 
890899cda47SBarry Smith   CHKMEMQ;
891a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
892899cda47SBarry Smith   CHKMEMQ;
8931ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
894899cda47SBarry Smith   CHKMEMQ;
895a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
896899cda47SBarry Smith     CHKMEMQ;
897a9d4b620SHong Zhang   /* supperdiagonal part */
898a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
899899cda47SBarry Smith     CHKMEMQ;
900a9d4b620SHong Zhang   PetscFunctionReturn(0);
901a9d4b620SHong Zhang }
902a9d4b620SHong Zhang 
903a9d4b620SHong Zhang #undef __FUNCT__
90440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
905dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
906a30f8f8cSSatish Balay {
907a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
908dfbe8321SBarry Smith   PetscErrorCode ierr;
9091302d50aSBarry Smith   PetscInt       nt;
910a30f8f8cSSatish Balay 
911a30f8f8cSSatish Balay   PetscFunctionBegin;
912a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
913899cda47SBarry Smith   if (nt != A->cmap.n) {
91429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
915a30f8f8cSSatish Balay   }
916a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
917899cda47SBarry Smith   if (nt != A->rmap.N) {
91829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
919a30f8f8cSSatish Balay   }
92065d70643SHong Zhang 
921b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
922b941877fSHong Zhang   /* do diagonal part */
923b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
924b941877fSHong Zhang   /* do supperdiagonal part */
925b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
926b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
927b941877fSHong Zhang   /* do subdiagonal part */
928b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
929b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
930b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
93165d70643SHong Zhang 
932a30f8f8cSSatish Balay   PetscFunctionReturn(0);
933a30f8f8cSSatish Balay }
934a30f8f8cSSatish Balay 
9354a2ae208SSatish Balay #undef __FUNCT__
9364a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
937dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
938a30f8f8cSSatish Balay {
939de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
940dfbe8321SBarry Smith   PetscErrorCode ierr;
941899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
942a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
943a9d4b620SHong Zhang 
944a9d4b620SHong Zhang   PetscFunctionBegin;
945a9d4b620SHong Zhang   /*
94656faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
94756faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
948a9d4b620SHong Zhang   */
949a9d4b620SHong Zhang   /* diagonal part */
950a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9512dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
952a9d4b620SHong Zhang 
953a9d4b620SHong Zhang   /* subdiagonal part */
954a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
955a9d4b620SHong Zhang 
956a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9571ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9581ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
959a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9601ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
961a9d4b620SHong Zhang 
962a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9631ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
964a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
965a9d4b620SHong Zhang 
966a9d4b620SHong Zhang   /* supperdiagonal part */
967a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
968a9d4b620SHong Zhang 
969a9d4b620SHong Zhang   PetscFunctionReturn(0);
970a9d4b620SHong Zhang }
971a9d4b620SHong Zhang 
972a9d4b620SHong Zhang #undef __FUNCT__
973a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
974dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
975a9d4b620SHong Zhang {
976a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
977dfbe8321SBarry Smith   PetscErrorCode ierr;
978a30f8f8cSSatish Balay 
979a30f8f8cSSatish Balay   PetscFunctionBegin;
980b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
981b941877fSHong Zhang   /* do diagonal part */
982b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
983b941877fSHong Zhang   /* do supperdiagonal part */
984b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
985de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
986de8b6608SHong Zhang 
987b941877fSHong Zhang   /* do subdiagonal part */
988a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
989a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
990a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
991aa482183SHong Zhang 
992a30f8f8cSSatish Balay   PetscFunctionReturn(0);
993a30f8f8cSSatish Balay }
994a30f8f8cSSatish Balay 
995a30f8f8cSSatish Balay /*
996a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
997a30f8f8cSSatish Balay    diagonal block
998a30f8f8cSSatish Balay */
9994a2ae208SSatish Balay #undef __FUNCT__
10004a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1001dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1002a30f8f8cSSatish Balay {
1003a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1004dfbe8321SBarry Smith   PetscErrorCode ierr;
1005a30f8f8cSSatish Balay 
1006a30f8f8cSSatish Balay   PetscFunctionBegin;
1007899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1008a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1009a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1010a30f8f8cSSatish Balay }
1011a30f8f8cSSatish Balay 
10124a2ae208SSatish Balay #undef __FUNCT__
10134a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1014f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1015a30f8f8cSSatish Balay {
1016a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1017dfbe8321SBarry Smith   PetscErrorCode ierr;
1018a30f8f8cSSatish Balay 
1019a30f8f8cSSatish Balay   PetscFunctionBegin;
1020f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1021f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1022a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1023a30f8f8cSSatish Balay }
1024a30f8f8cSSatish Balay 
10254a2ae208SSatish Balay #undef __FUNCT__
10264a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10271302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1028a30f8f8cSSatish Balay {
1029d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1030d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1031d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1032899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1033899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1034899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1035d0d4cfc2SHong Zhang 
1036a30f8f8cSSatish Balay   PetscFunctionBegin;
1037d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1038d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1039d0d4cfc2SHong Zhang 
1040d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1041d0d4cfc2SHong Zhang     /*
1042d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1043d0d4cfc2SHong Zhang     */
1044d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1045d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1046d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1047d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1048d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1049d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1050d0d4cfc2SHong Zhang     }
1051d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1052d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1053d0d4cfc2SHong Zhang   }
1054d0d4cfc2SHong Zhang 
1055d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1056d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1057d0d4cfc2SHong Zhang 
1058d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1059d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1060d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1061d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1062d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1063d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1064d0d4cfc2SHong Zhang 
1065d0d4cfc2SHong Zhang   cmap  = mat->garray;
1066d0d4cfc2SHong Zhang   if (v  || idx) {
1067d0d4cfc2SHong Zhang     if (nztot) {
1068d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1069d0d4cfc2SHong Zhang       PetscInt imark = -1;
1070d0d4cfc2SHong Zhang       if (v) {
1071d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1072d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1073d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1074d0d4cfc2SHong Zhang           else break;
1075d0d4cfc2SHong Zhang         }
1076d0d4cfc2SHong Zhang         imark = i;
1077d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1078d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1079d0d4cfc2SHong Zhang       }
1080d0d4cfc2SHong Zhang       if (idx) {
1081d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1082d0d4cfc2SHong Zhang         if (imark > -1) {
1083d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1084d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1085d0d4cfc2SHong Zhang           }
1086d0d4cfc2SHong Zhang         } else {
1087d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1088d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1089d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1090d0d4cfc2SHong Zhang             else break;
1091d0d4cfc2SHong Zhang           }
1092d0d4cfc2SHong Zhang           imark = i;
1093d0d4cfc2SHong Zhang         }
1094d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1095d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1096d0d4cfc2SHong Zhang       }
1097d0d4cfc2SHong Zhang     } else {
1098d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1099d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1100d0d4cfc2SHong Zhang     }
1101d0d4cfc2SHong Zhang   }
1102d0d4cfc2SHong Zhang   *nz = nztot;
1103d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1104d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1105a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1106a30f8f8cSSatish Balay }
1107a30f8f8cSSatish Balay 
11084a2ae208SSatish Balay #undef __FUNCT__
11094a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11101302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1111a30f8f8cSSatish Balay {
1112a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1113a30f8f8cSSatish Balay 
1114a30f8f8cSSatish Balay   PetscFunctionBegin;
1115abc0a331SBarry Smith   if (!baij->getrowactive) {
1116abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1117a30f8f8cSSatish Balay   }
1118a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1119a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1120a30f8f8cSSatish Balay }
1121a30f8f8cSSatish Balay 
11224a2ae208SSatish Balay #undef __FUNCT__
1123d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1124d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1125d0d4cfc2SHong Zhang {
1126d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1127d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1128d0d4cfc2SHong Zhang 
1129d0d4cfc2SHong Zhang   PetscFunctionBegin;
1130d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1131d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1132d0d4cfc2SHong Zhang }
1133d0d4cfc2SHong Zhang #undef __FUNCT__
1134d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1135d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1136d0d4cfc2SHong Zhang {
1137d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1138d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1139d0d4cfc2SHong Zhang 
1140d0d4cfc2SHong Zhang   PetscFunctionBegin;
1141d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1142d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1143d0d4cfc2SHong Zhang }
1144d0d4cfc2SHong Zhang 
1145d0d4cfc2SHong Zhang #undef __FUNCT__
114699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
114799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
114899cafbc1SBarry Smith {
114999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
115099cafbc1SBarry Smith   PetscErrorCode ierr;
115199cafbc1SBarry Smith 
115299cafbc1SBarry Smith   PetscFunctionBegin;
115399cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
115499cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
115599cafbc1SBarry Smith   PetscFunctionReturn(0);
115699cafbc1SBarry Smith }
115799cafbc1SBarry Smith 
115899cafbc1SBarry Smith #undef __FUNCT__
115999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
116099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
116199cafbc1SBarry Smith {
116299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
116399cafbc1SBarry Smith   PetscErrorCode ierr;
116499cafbc1SBarry Smith 
116599cafbc1SBarry Smith   PetscFunctionBegin;
116699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
116799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
116899cafbc1SBarry Smith   PetscFunctionReturn(0);
116999cafbc1SBarry Smith }
117099cafbc1SBarry Smith 
117199cafbc1SBarry Smith #undef __FUNCT__
11724a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1173dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1174a30f8f8cSSatish Balay {
1175a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1176dfbe8321SBarry Smith   PetscErrorCode ierr;
1177a30f8f8cSSatish Balay 
1178a30f8f8cSSatish Balay   PetscFunctionBegin;
1179a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1180a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1181a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1182a30f8f8cSSatish Balay }
1183a30f8f8cSSatish Balay 
11844a2ae208SSatish Balay #undef __FUNCT__
11854a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1186dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1187a30f8f8cSSatish Balay {
1188a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1189a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1190dfbe8321SBarry Smith   PetscErrorCode ierr;
1191a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1192a30f8f8cSSatish Balay 
1193a30f8f8cSSatish Balay   PetscFunctionBegin;
1194899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1195a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1196a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1197a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1198a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1199a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1200a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1201a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1202a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1203a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1204a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1205a30f8f8cSSatish Balay     info->memory       = isend[3];
1206a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1207a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1208d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1209a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1210a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1211a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1212a30f8f8cSSatish Balay     info->memory       = irecv[3];
1213a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1214a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1215d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1216a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1217a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1218a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1219a30f8f8cSSatish Balay     info->memory       = irecv[3];
1220a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1221a30f8f8cSSatish Balay   } else {
122277431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1223a30f8f8cSSatish Balay   }
1224899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1225899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1226899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1227899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1228a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1229a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1230a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1231a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1232a30f8f8cSSatish Balay }
1233a30f8f8cSSatish Balay 
12344a2ae208SSatish Balay #undef __FUNCT__
12354a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1236dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1237a30f8f8cSSatish Balay {
1238a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1239d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1240dfbe8321SBarry Smith   PetscErrorCode ierr;
1241a30f8f8cSSatish Balay 
1242a30f8f8cSSatish Balay   PetscFunctionBegin;
1243e98b92d7SKris Buschelman   switch (op) {
1244e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1245e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1246e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1247e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1248e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1249e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1250e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1251a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1252a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1253e98b92d7SKris Buschelman     break;
1254e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1255a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1256a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1257a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1258e98b92d7SKris Buschelman     break;
1259e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1260e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1261e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1262ad86a440SBarry Smith     ierr = PetscInfo1(A,"Option %d ignored\n",op);CHKERRQ(ierr);
1263e98b92d7SKris Buschelman     break;
1264e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1265a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1266a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1267a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1268e98b92d7SKris Buschelman     break;
1269e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1270a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1271e98b92d7SKris Buschelman     break;
1272e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
127329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1274e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1275a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1276e98b92d7SKris Buschelman     break;
12779a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12789a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12799a4540c5SBarry Smith   case MAT_HERMITIAN:
12809a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
128177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
128277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12839a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12849a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12859a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
128677e54ba9SKris Buschelman     break;
1287d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
1288d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_TRUE;
1289d0d4cfc2SHong Zhang     break;
1290d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
1291d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_FALSE;
1292d0d4cfc2SHong Zhang     break;
1293d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
1294d0d4cfc2SHong Zhang     aA->getrow_utriangular = PETSC_TRUE;
1295d0d4cfc2SHong Zhang     break;
1296e98b92d7SKris Buschelman   default:
1297ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1298a30f8f8cSSatish Balay   }
1299a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1300a30f8f8cSSatish Balay }
1301a30f8f8cSSatish Balay 
13024a2ae208SSatish Balay #undef __FUNCT__
13038115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1304dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1305a30f8f8cSSatish Balay {
1306dfbe8321SBarry Smith   PetscErrorCode ierr;
1307a30f8f8cSSatish Balay   PetscFunctionBegin;
1308999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13098115998fSBarry Smith   PetscFunctionReturn(0);
1310a30f8f8cSSatish Balay }
1311a30f8f8cSSatish Balay 
13124a2ae208SSatish Balay #undef __FUNCT__
13134a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1314dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1315a30f8f8cSSatish Balay {
1316a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1317a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1318dfbe8321SBarry Smith   PetscErrorCode ierr;
13195e90f9d9SHong Zhang   PetscInt       nv,m,n;
1320b3bf805bSHong Zhang   PetscTruth     flg;
1321a30f8f8cSSatish Balay 
1322a30f8f8cSSatish Balay   PetscFunctionBegin;
1323a30f8f8cSSatish Balay   if (ll != rr){
1324b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1325b3bf805bSHong Zhang     if (!flg)
132629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1327a30f8f8cSSatish Balay   }
1328b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1329b3bf805bSHong Zhang 
13305e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
13315e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1332b3bf805bSHong Zhang 
13335e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
13345e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13355e90f9d9SHong Zhang 
1336a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
13375e90f9d9SHong Zhang 
13385e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1339a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13405e90f9d9SHong Zhang 
13415e90f9d9SHong Zhang   /* scale the diagonal part */
1342a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1343a30f8f8cSSatish Balay 
13445e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1345a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1346a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1347a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1348a30f8f8cSSatish Balay }
1349a30f8f8cSSatish Balay 
13504a2ae208SSatish Balay #undef __FUNCT__
13514a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1352dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1353a30f8f8cSSatish Balay {
1354a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1355a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
13561302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1357dfbe8321SBarry Smith   PetscErrorCode    ierr;
1358a30f8f8cSSatish Balay 
1359a30f8f8cSSatish Balay   PetscFunctionBegin;
1360a30f8f8cSSatish Balay   if (!a->rank) {
1361a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1362a30f8f8cSSatish Balay   }
13631302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1364a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1365a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1366a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1367a30f8f8cSSatish Balay }
1368a30f8f8cSSatish Balay 
13694a2ae208SSatish Balay #undef __FUNCT__
13704a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1371dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1372a30f8f8cSSatish Balay {
1373f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1374dfbe8321SBarry Smith   PetscErrorCode ierr;
1375a30f8f8cSSatish Balay 
1376a30f8f8cSSatish Balay   PetscFunctionBegin;
1377a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1378a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1379a30f8f8cSSatish Balay }
1380a30f8f8cSSatish Balay 
13816849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1382a30f8f8cSSatish Balay 
13834a2ae208SSatish Balay #undef __FUNCT__
13844a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1385dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1386a30f8f8cSSatish Balay {
1387a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1388a30f8f8cSSatish Balay   Mat            a,b,c,d;
1389a30f8f8cSSatish Balay   PetscTruth     flg;
1390dfbe8321SBarry Smith   PetscErrorCode ierr;
1391a30f8f8cSSatish Balay 
1392a30f8f8cSSatish Balay   PetscFunctionBegin;
1393a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1394a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1395a30f8f8cSSatish Balay 
1396a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1397abc0a331SBarry Smith   if (flg) {
1398a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1399a30f8f8cSSatish Balay   }
1400a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1401a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1402a30f8f8cSSatish Balay }
1403a30f8f8cSSatish Balay 
14044a2ae208SSatish Balay #undef __FUNCT__
14053c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
14063c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
14073c896bc6SHong Zhang {
14083c896bc6SHong Zhang   PetscErrorCode ierr;
14093c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
14103c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
14113c896bc6SHong Zhang 
14123c896bc6SHong Zhang   PetscFunctionBegin;
14133c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
14143c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1415d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
14163c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1417d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
14183c896bc6SHong Zhang   } else {
14193c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14203c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14213c896bc6SHong Zhang   }
14223c896bc6SHong Zhang   PetscFunctionReturn(0);
14233c896bc6SHong Zhang }
14243c896bc6SHong Zhang 
14253c896bc6SHong Zhang #undef __FUNCT__
14264a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1427dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1428273d9f13SBarry Smith {
1429dfbe8321SBarry Smith   PetscErrorCode ierr;
1430273d9f13SBarry Smith 
1431273d9f13SBarry Smith   PetscFunctionBegin;
14327edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1433273d9f13SBarry Smith   PetscFunctionReturn(0);
1434273d9f13SBarry Smith }
1435a5e6ed63SBarry Smith 
14364fe895cdSHong Zhang #include "petscblaslapack.h"
14374fe895cdSHong Zhang #undef __FUNCT__
14384fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14394fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14404fe895cdSHong Zhang {
14414fe895cdSHong Zhang   PetscErrorCode ierr;
14424fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
14434fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14444fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14454fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14464fe895cdSHong Zhang 
14474fe895cdSHong Zhang   PetscFunctionBegin;
14484fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14494fe895cdSHong Zhang     PetscScalar alpha = a;
14504fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
14514fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
14524fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
14534fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
14544fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
14554fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
14564fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
14574fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
14584fe895cdSHong Zhang   } else {
1459d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14604fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1461d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14624fe895cdSHong Zhang   }
14634fe895cdSHong Zhang   PetscFunctionReturn(0);
14644fe895cdSHong Zhang }
14654fe895cdSHong Zhang 
1466a5e6ed63SBarry Smith #undef __FUNCT__
1467a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14681302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1469a5e6ed63SBarry Smith {
14706849ba73SBarry Smith   PetscErrorCode ierr;
14711302d50aSBarry Smith   PetscInt       i;
1472a5e6ed63SBarry Smith   PetscTruth     flg;
1473a5e6ed63SBarry Smith 
14746849ba73SBarry Smith   PetscFunctionBegin;
1475a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1476a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1477a5e6ed63SBarry Smith     if (!flg) {
14781302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1479a5e6ed63SBarry Smith     }
1480a5e6ed63SBarry Smith   }
1481a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1482a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1483a5e6ed63SBarry Smith }
1484a5e6ed63SBarry Smith 
1485a5e6ed63SBarry Smith 
1486a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1487a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1488a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1489a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1490a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1491a9d4b620SHong Zhang        MatMult_MPISBAIJ,
149297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1493431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1494431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497a30f8f8cSSatish Balay        0,
149897304618SKris Buschelman /*10*/ 0,
1499a30f8f8cSSatish Balay        0,
1500a30f8f8cSSatish Balay        0,
15012798e883SHong Zhang        MatRelax_MPISBAIJ,
1502a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
150397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1504a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1505a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1506a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1507a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
150897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1509a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1510a30f8f8cSSatish Balay        0,
1511a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1512a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1513dcf5cc72SBarry Smith /*25*/ 0,
1514a30f8f8cSSatish Balay        0,
1515a30f8f8cSSatish Balay        0,
1516a30f8f8cSSatish Balay        0,
1517a30f8f8cSSatish Balay        0,
151897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1519b5df2d14SHong Zhang        0,
1520a30f8f8cSSatish Balay        0,
1521a30f8f8cSSatish Balay        0,
1522a30f8f8cSSatish Balay        0,
152397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1524a30f8f8cSSatish Balay        0,
1525a30f8f8cSSatish Balay        0,
1526a30f8f8cSSatish Balay        0,
1527a30f8f8cSSatish Balay        0,
15284fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1529a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1530d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1531a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
15323c896bc6SHong Zhang        MatCopy_MPISBAIJ,
153397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1534a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1535a30f8f8cSSatish Balay        0,
1536a30f8f8cSSatish Balay        0,
1537a30f8f8cSSatish Balay        0,
1538521d7252SBarry Smith /*50*/ 0,
1539a30f8f8cSSatish Balay        0,
1540a30f8f8cSSatish Balay        0,
1541a30f8f8cSSatish Balay        0,
1542a30f8f8cSSatish Balay        0,
154397304618SKris Buschelman /*55*/ 0,
1544a30f8f8cSSatish Balay        0,
1545a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1546a30f8f8cSSatish Balay        0,
1547a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
154897304618SKris Buschelman /*60*/ 0,
1549a30f8f8cSSatish Balay        0,
1550a30f8f8cSSatish Balay        0,
1551357abbc8SBarry Smith        0,
155224d5174aSHong Zhang        0,
155397304618SKris Buschelman /*65*/ 0,
155424d5174aSHong Zhang        0,
155524d5174aSHong Zhang        0,
155624d5174aSHong Zhang        0,
155724d5174aSHong Zhang        0,
155897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
155924d5174aSHong Zhang        0,
156097304618SKris Buschelman        0,
156197304618SKris Buschelman        0,
156297304618SKris Buschelman        0,
156397304618SKris Buschelman /*75*/ 0,
156497304618SKris Buschelman        0,
156597304618SKris Buschelman        0,
156697304618SKris Buschelman        0,
156797304618SKris Buschelman        0,
156897304618SKris Buschelman /*80*/ 0,
156997304618SKris Buschelman        0,
157097304618SKris Buschelman        0,
157197304618SKris Buschelman        0,
1572865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1573865e5f61SKris Buschelman /*85*/ 0,
1574865e5f61SKris Buschelman        0,
1575865e5f61SKris Buschelman        0,
1576865e5f61SKris Buschelman        0,
1577865e5f61SKris Buschelman        0,
1578865e5f61SKris Buschelman /*90*/ 0,
1579865e5f61SKris Buschelman        0,
1580865e5f61SKris Buschelman        0,
1581865e5f61SKris Buschelman        0,
1582865e5f61SKris Buschelman        0,
1583865e5f61SKris Buschelman /*95*/ 0,
1584865e5f61SKris Buschelman        0,
1585865e5f61SKris Buschelman        0,
158699cafbc1SBarry Smith        0,
158799cafbc1SBarry Smith        0,
158899cafbc1SBarry Smith /*100*/0,
158999cafbc1SBarry Smith        0,
159099cafbc1SBarry Smith        0,
159199cafbc1SBarry Smith        0,
159299cafbc1SBarry Smith        0,
159399cafbc1SBarry Smith /*105*/0,
159499cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1595d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1596d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1597d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
159899cafbc1SBarry Smith };
1599a30f8f8cSSatish Balay 
1600a30f8f8cSSatish Balay 
1601a30f8f8cSSatish Balay EXTERN_C_BEGIN
16024a2ae208SSatish Balay #undef __FUNCT__
16034a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1604be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1605a30f8f8cSSatish Balay {
1606a30f8f8cSSatish Balay   PetscFunctionBegin;
1607a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1608a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1609a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1610a30f8f8cSSatish Balay }
1611a30f8f8cSSatish Balay EXTERN_C_END
1612a30f8f8cSSatish Balay 
1613273d9f13SBarry Smith EXTERN_C_BEGIN
16144a2ae208SSatish Balay #undef __FUNCT__
1615a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1616be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1617a23d5eceSKris Buschelman {
1618a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1619dfbe8321SBarry Smith   PetscErrorCode ierr;
16201302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1621a23d5eceSKris Buschelman 
1622a23d5eceSKris Buschelman   PetscFunctionBegin;
1623a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1624a23d5eceSKris Buschelman 
1625a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1626a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1627a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
162877431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
162977431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1630899cda47SBarry Smith 
1631899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
1632899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
1633899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
1634899cda47SBarry Smith 
1635a23d5eceSKris Buschelman   if (d_nnz) {
1636899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
163777431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1638a23d5eceSKris Buschelman     }
1639a23d5eceSKris Buschelman   }
1640a23d5eceSKris Buschelman   if (o_nnz) {
1641899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
164277431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1643a23d5eceSKris Buschelman     }
1644a23d5eceSKris Buschelman   }
1645a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1646a23d5eceSKris Buschelman 
1647a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1648899cda47SBarry Smith   mbs = B->rmap.n/bs;
1649899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1650899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1651899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1652a23d5eceSKris Buschelman   }
1653a23d5eceSKris Buschelman 
1654899cda47SBarry Smith   B->rmap.bs  = bs;
1655a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1656a23d5eceSKris Buschelman   b->mbs = mbs;
1657a23d5eceSKris Buschelman   b->nbs = mbs;
1658a23d5eceSKris Buschelman   b->Mbs = Mbs;
1659a23d5eceSKris Buschelman   b->Nbs = Mbs;
1660a23d5eceSKris Buschelman 
1661a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1662899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1663a23d5eceSKris Buschelman   }
1664899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1665899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1666a23d5eceSKris Buschelman 
1667899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1668899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1669a23d5eceSKris Buschelman 
1670f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1671899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
16729c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1673c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
167452e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
16759c097c71SKris Buschelman 
1676f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1677899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
16784aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1679589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
168052e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1681a23d5eceSKris Buschelman 
1682a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1683a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1684a23d5eceSKris Buschelman 
1685a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1686a23d5eceSKris Buschelman }
1687a23d5eceSKris Buschelman EXTERN_C_END
1688a23d5eceSKris Buschelman 
16890bad9183SKris Buschelman /*MC
1690fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16910bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16920bad9183SKris Buschelman 
16930bad9183SKris Buschelman    Options Database Keys:
16940bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16950bad9183SKris Buschelman 
16960bad9183SKris Buschelman   Level: beginner
16970bad9183SKris Buschelman 
16980bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16990bad9183SKris Buschelman M*/
17000bad9183SKris Buschelman 
1701a23d5eceSKris Buschelman EXTERN_C_BEGIN
1702a23d5eceSKris Buschelman #undef __FUNCT__
17034a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1704be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1705b5df2d14SHong Zhang {
1706b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1707dfbe8321SBarry Smith   PetscErrorCode ierr;
1708b5df2d14SHong Zhang   PetscTruth     flg;
1709b5df2d14SHong Zhang 
1710b5df2d14SHong Zhang   PetscFunctionBegin;
1711b5df2d14SHong Zhang 
1712b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1713b0a32e0cSBarry Smith   B->data = (void*)b;
1714b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1715b5df2d14SHong Zhang 
1716b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1717b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1718b5df2d14SHong Zhang   B->mapping    = 0;
1719b5df2d14SHong Zhang   B->factor     = 0;
1720b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1721b5df2d14SHong Zhang 
1722b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1723b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1724b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1725b5df2d14SHong Zhang 
1726b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1727899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang   /* build cache for off array entries formed */
1730b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1731b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1732b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1733b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1734b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1735b5df2d14SHong Zhang 
1736f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1737b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
173864a35ccbSBarry Smith   b->setvalueslen     = 0;
1739b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1740b5df2d14SHong Zhang #endif
1741b5df2d14SHong Zhang 
1742b5df2d14SHong Zhang   /* stuff used in block assembly */
1743b5df2d14SHong Zhang   b->barray       = 0;
1744b5df2d14SHong Zhang 
1745b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1746b5df2d14SHong Zhang   b->lvec         = 0;
1747b5df2d14SHong Zhang   b->Mvctx        = 0;
174840781036SHong Zhang   b->slvec0       = 0;
174940781036SHong Zhang   b->slvec0b      = 0;
175040781036SHong Zhang   b->slvec1       = 0;
175140781036SHong Zhang   b->slvec1a      = 0;
175240781036SHong Zhang   b->slvec1b      = 0;
175340781036SHong Zhang   b->sMvctx       = 0;
1754b5df2d14SHong Zhang 
1755b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1756b5df2d14SHong Zhang   b->rowindices   = 0;
1757b5df2d14SHong Zhang   b->rowvalues    = 0;
1758b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1759b5df2d14SHong Zhang 
1760b5df2d14SHong Zhang   /* hash table stuff */
1761b5df2d14SHong Zhang   b->ht           = 0;
1762b5df2d14SHong Zhang   b->hd           = 0;
1763b5df2d14SHong Zhang   b->ht_size      = 0;
1764b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1765b5df2d14SHong Zhang   b->ht_fact      = 0;
1766b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1767b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1768b5df2d14SHong Zhang 
176959ffdab8SBarry Smith   b->in_loc       = 0;
177059ffdab8SBarry Smith   b->v_loc        = 0;
177159ffdab8SBarry Smith   b->n_loc        = 0;
1772e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1773b5df2d14SHong Zhang   if (flg) {
1774f6275e2eSBarry Smith     PetscReal fact = 1.39;
1775b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1776e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1777b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1778b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1779ae15b995SBarry Smith     ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1780b5df2d14SHong Zhang   }
1781b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1782b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1783b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1784b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1785b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1786b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1787b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1788b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1789b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1790a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1791a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1792a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
179323ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
179423ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
179523ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
179623ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1797b5df2d14SHong Zhang   PetscFunctionReturn(0);
1798b5df2d14SHong Zhang }
1799273d9f13SBarry Smith EXTERN_C_END
1800b5df2d14SHong Zhang 
1801209238afSKris Buschelman /*MC
1802002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1803209238afSKris Buschelman 
1804209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1805209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1806209238afSKris Buschelman 
1807209238afSKris Buschelman    Options Database Keys:
1808209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1809209238afSKris Buschelman 
1810209238afSKris Buschelman   Level: beginner
1811209238afSKris Buschelman 
1812209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1813209238afSKris Buschelman M*/
1814209238afSKris Buschelman 
1815209238afSKris Buschelman EXTERN_C_BEGIN
1816209238afSKris Buschelman #undef __FUNCT__
1817209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1818be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1819dfbe8321SBarry Smith {
18206849ba73SBarry Smith   PetscErrorCode ierr;
18211302d50aSBarry Smith   PetscMPIInt    size;
1822209238afSKris Buschelman 
1823209238afSKris Buschelman   PetscFunctionBegin;
1824209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1825209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1826209238afSKris Buschelman   if (size == 1) {
1827209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1828209238afSKris Buschelman   } else {
1829209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1830209238afSKris Buschelman   }
1831209238afSKris Buschelman   PetscFunctionReturn(0);
1832209238afSKris Buschelman }
1833209238afSKris Buschelman EXTERN_C_END
1834209238afSKris Buschelman 
18354a2ae208SSatish Balay #undef __FUNCT__
18364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1837b5df2d14SHong Zhang /*@C
1838b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1839b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1840b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1841b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1842b5df2d14SHong Zhang 
1843b5df2d14SHong Zhang    Collective on Mat
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang    Input Parameters:
1846b5df2d14SHong Zhang +  A - the matrix
1847b5df2d14SHong Zhang .  bs   - size of blockk
1848b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1849b5df2d14SHong Zhang            submatrix  (same for all local rows)
1850b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18516d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18526d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18536d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1854b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1855b5df2d14SHong Zhang            submatrix (same for all local rows).
1856b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1857b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1858b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1859b5df2d14SHong Zhang 
1860b5df2d14SHong Zhang 
1861b5df2d14SHong Zhang    Options Database Keys:
1862b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1863b5df2d14SHong Zhang                      block calculations (much slower)
1864b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1865b5df2d14SHong Zhang 
1866b5df2d14SHong Zhang    Notes:
1867b5df2d14SHong Zhang 
1868b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1869b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1870b5df2d14SHong Zhang 
187149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
187249a6f317SBarry Smith 
1873b5df2d14SHong Zhang    Storage Information:
1874b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1875b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1876b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1877b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1878b5df2d14SHong Zhang 
1879b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1880b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1881b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1882b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1883b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1884b5df2d14SHong Zhang 
1885b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1886b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang .vb
1889b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1890b5df2d14SHong Zhang           -------------------
1891b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1892b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1893b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1894b5df2d14SHong Zhang           -------------------
1895b5df2d14SHong Zhang .ve
1896b5df2d14SHong Zhang 
1897b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1898b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18996d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19006d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1901b5df2d14SHong Zhang 
19026d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19036d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1904b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1905b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1906b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1907b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1908b5df2d14SHong Zhang    matrices.
1909b5df2d14SHong Zhang 
1910b5df2d14SHong Zhang    Level: intermediate
1911b5df2d14SHong Zhang 
1912b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1913b5df2d14SHong Zhang 
1914b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1915b5df2d14SHong Zhang @*/
1916be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1917b5df2d14SHong Zhang {
19181302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1919b5df2d14SHong Zhang 
1920b5df2d14SHong Zhang   PetscFunctionBegin;
1921a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1922a23d5eceSKris Buschelman   if (f) {
1923a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1924b5df2d14SHong Zhang   }
1925b5df2d14SHong Zhang   PetscFunctionReturn(0);
1926b5df2d14SHong Zhang }
1927b5df2d14SHong Zhang 
19284a2ae208SSatish Balay #undef __FUNCT__
19294a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1930a30f8f8cSSatish Balay /*@C
1931a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1932a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1933a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1934a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1935a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1936a30f8f8cSSatish Balay 
1937a30f8f8cSSatish Balay    Collective on MPI_Comm
1938a30f8f8cSSatish Balay 
1939a30f8f8cSSatish Balay    Input Parameters:
1940a30f8f8cSSatish Balay +  comm - MPI communicator
1941a30f8f8cSSatish Balay .  bs   - size of blockk
1942a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1943a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1944a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1945a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1946a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1947a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1948a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1949a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1950a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1951a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1952a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19536d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19546d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19556d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1956a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1957a30f8f8cSSatish Balay            submatrix (same for all local rows).
1958a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1959a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1960a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1961a30f8f8cSSatish Balay 
1962a30f8f8cSSatish Balay    Output Parameter:
1963a30f8f8cSSatish Balay .  A - the matrix
1964a30f8f8cSSatish Balay 
1965a30f8f8cSSatish Balay    Options Database Keys:
1966a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1967a30f8f8cSSatish Balay                      block calculations (much slower)
1968a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1969a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1970a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1971a30f8f8cSSatish Balay 
1972a30f8f8cSSatish Balay    Notes:
1973d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1974d1be2dadSMatthew Knepley 
1975a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1976a30f8f8cSSatish Balay    (possibly both).
1977a30f8f8cSSatish Balay 
1978a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1979a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1980a30f8f8cSSatish Balay 
198149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
198249a6f317SBarry Smith 
1983a30f8f8cSSatish Balay    Storage Information:
1984a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1985a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1986a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1987a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1988a30f8f8cSSatish Balay 
1989a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1990a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1991a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1992a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1993a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1996a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1997a30f8f8cSSatish Balay 
1998a30f8f8cSSatish Balay .vb
1999a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2000a30f8f8cSSatish Balay           -------------------
2001a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2002a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2003a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2004a30f8f8cSSatish Balay           -------------------
2005a30f8f8cSSatish Balay .ve
2006a30f8f8cSSatish Balay 
2007a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2008a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20096d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20106d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2011a30f8f8cSSatish Balay 
20126d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20136d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2014a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2015a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2016a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2017a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2018a30f8f8cSSatish Balay    matrices.
2019a30f8f8cSSatish Balay 
2020a30f8f8cSSatish Balay    Level: intermediate
2021a30f8f8cSSatish Balay 
2022a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2023a30f8f8cSSatish Balay 
2024a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2025a30f8f8cSSatish Balay @*/
2026a30f8f8cSSatish Balay 
2027be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2028a30f8f8cSSatish Balay {
20296849ba73SBarry Smith   PetscErrorCode ierr;
20301302d50aSBarry Smith   PetscMPIInt    size;
2031a30f8f8cSSatish Balay 
2032a30f8f8cSSatish Balay   PetscFunctionBegin;
2033f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2034f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2035273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2036273d9f13SBarry Smith   if (size > 1) {
2037b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2038b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2039273d9f13SBarry Smith   } else {
2040273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2041273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2042273d9f13SBarry Smith   }
2043a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2044a30f8f8cSSatish Balay }
2045a30f8f8cSSatish Balay 
2046a30f8f8cSSatish Balay 
20474a2ae208SSatish Balay #undef __FUNCT__
20484a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20496849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2050a30f8f8cSSatish Balay {
2051a30f8f8cSSatish Balay   Mat            mat;
2052a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2053dfbe8321SBarry Smith   PetscErrorCode ierr;
2054899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
2055387bc808SHong Zhang   PetscScalar    *array;
2056a30f8f8cSSatish Balay 
2057a30f8f8cSSatish Balay   PetscFunctionBegin;
2058a30f8f8cSSatish Balay   *newmat       = 0;
2059f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2060899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2061be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20621d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2063899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2064899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2065e1b6402fSHong Zhang 
206682327fa8SHong Zhang   mat->factor       = matin->factor;
2067273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20697fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20707fff6886SHong Zhang 
2071b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2072a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2073a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2074a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2075a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2076a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2077a30f8f8cSSatish Balay 
2078899cda47SBarry Smith 
2079a30f8f8cSSatish Balay   a->size         = oldmat->size;
2080a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2081a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2082a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2083a30f8f8cSSatish Balay   a->rowindices   = 0;
2084a30f8f8cSSatish Balay   a->rowvalues    = 0;
2085a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2086a30f8f8cSSatish Balay   a->barray       = 0;
2087899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2088899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2089899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2090899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2091a30f8f8cSSatish Balay 
2092a30f8f8cSSatish Balay   /* hash table stuff */
2093a30f8f8cSSatish Balay   a->ht           = 0;
2094a30f8f8cSSatish Balay   a->hd           = 0;
2095a30f8f8cSSatish Balay   a->ht_size      = 0;
2096a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2097a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2098a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2099a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2100a30f8f8cSSatish Balay 
2101899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2102a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2103899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2104a30f8f8cSSatish Balay   if (oldmat->colmap) {
2105a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2106a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2107a30f8f8cSSatish Balay #else
21081302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21101302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2111a30f8f8cSSatish Balay #endif
2112a30f8f8cSSatish Balay   } else a->colmap = 0;
2113387bc808SHong Zhang 
2114a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21151302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
211652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21171302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2118a30f8f8cSSatish Balay   } else a->garray = 0;
2119a30f8f8cSSatish Balay 
2120a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
212152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2122a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
212352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
212482327fa8SHong Zhang 
212582327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
212652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212782327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2129387bc808SHong Zhang 
2130387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21311ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2132387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2133387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21341ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21351ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2136387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21371ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
214052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
214152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
214252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2143387bc808SHong Zhang 
2144387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2145387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2146387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214882327fa8SHong Zhang 
2149a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
215052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
215252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2153b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2154a30f8f8cSSatish Balay   *newmat = mat;
2155a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2156a30f8f8cSSatish Balay }
2157a30f8f8cSSatish Balay 
2158a30f8f8cSSatish Balay #include "petscsys.h"
2159a30f8f8cSSatish Balay 
21604a2ae208SSatish Balay #undef __FUNCT__
21614a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2162f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2163a30f8f8cSSatish Balay {
2164a30f8f8cSSatish Balay   Mat            A;
21656849ba73SBarry Smith   PetscErrorCode ierr;
216613f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216787828ca2SBarry Smith   PetscScalar    *vals,*buf;
2168a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2169a30f8f8cSSatish Balay   MPI_Status     status;
21702fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
217113f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21722fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21731302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21741302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21751302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
217613f74950SBarry Smith   int            fd;
2177a30f8f8cSSatish Balay 
2178a30f8f8cSSatish Balay   PetscFunctionBegin;
2179b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay 
2181a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2183a30f8f8cSSatish Balay   if (!rank) {
2184b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2185a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2186552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2187a30f8f8cSSatish Balay     if (header[3] < 0) {
218829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2189a30f8f8cSSatish Balay     }
2190a30f8f8cSSatish Balay   }
2191a30f8f8cSSatish Balay 
2192a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2193a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2194a30f8f8cSSatish Balay 
219529bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2196a30f8f8cSSatish Balay 
2197a30f8f8cSSatish Balay   /*
2198a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2199a30f8f8cSSatish Balay      divisible by the blocksize
2200a30f8f8cSSatish Balay   */
2201a30f8f8cSSatish Balay   Mbs        = M/bs;
2202a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2203a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2204a30f8f8cSSatish Balay   else                  Mbs++;
2205a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2206ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2207a30f8f8cSSatish Balay   }
2208a30f8f8cSSatish Balay 
2209a30f8f8cSSatish Balay   /* determine ownership of all rows */
2210a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2211a30f8f8cSSatish Balay   m          = mbs*bs;
2212a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2213a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2214a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay   rowners[0] = 0;
2216a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2217a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2218a30f8f8cSSatish Balay   rstart = rowners[rank];
2219a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2220a30f8f8cSSatish Balay 
2221a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22222fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay   if (!rank) {
22241302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2226a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2227a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2229a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay   } else {
2232a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2233a30f8f8cSSatish Balay   }
2234a30f8f8cSSatish Balay 
22350222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2236a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22371302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22381302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2239a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2240a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2241a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2242a30f8f8cSSatish Balay       }
2243a30f8f8cSSatish Balay     }
2244a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2245a30f8f8cSSatish Balay 
2246a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2247a30f8f8cSSatish Balay     maxnz = 0;
2248a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2249a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2250a30f8f8cSSatish Balay     }
22511302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay 
2253a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2254a30f8f8cSSatish Balay     nz     = procsnz[0];
22551302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay     mycols = ibuf;
2257a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2258a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2259a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2260a30f8f8cSSatish Balay 
2261a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2262a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2263a30f8f8cSSatish Balay       nz   = procsnz[i];
2264a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2265a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay     }
2267a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2268a30f8f8cSSatish Balay     if (size != 1) {
2269a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2270a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2271a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2272a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2273a30f8f8cSSatish Balay     }
2274a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22750222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2276a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2277a30f8f8cSSatish Balay     nz = 0;
2278a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2279a30f8f8cSSatish Balay       nz += locrowlens[i];
2280a30f8f8cSSatish Balay     }
22811302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2282a30f8f8cSSatish Balay     mycols = ibuf;
2283a30f8f8cSSatish Balay     /* receive message of column indices*/
2284a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2285a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
228629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2287a30f8f8cSSatish Balay   }
2288a30f8f8cSSatish Balay 
2289a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22901302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2291a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22921302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22931302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2294a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2295a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2296a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2297a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2298a30f8f8cSSatish Balay     dcount  = 0;
2299a30f8f8cSSatish Balay     odcount = 0;
2300a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2301a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2302a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23030222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2304a30f8f8cSSatish Balay         if (!mask[tmp]) {
2305a30f8f8cSSatish Balay           mask[tmp] = 1;
23060222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23070222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2308a30f8f8cSSatish Balay         }
2309a30f8f8cSSatish Balay       }
2310a30f8f8cSSatish Balay       rowcount++;
2311a30f8f8cSSatish Balay     }
2312a30f8f8cSSatish Balay 
23130222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23140222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2315a30f8f8cSSatish Balay 
2316a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2317a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2318a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2319a30f8f8cSSatish Balay   }
2320a30f8f8cSSatish Balay 
2321a30f8f8cSSatish Balay   /* create our matrix */
2322f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2323f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
232422191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232522191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2326273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2327a30f8f8cSSatish Balay 
2328a30f8f8cSSatish Balay   if (!rank) {
232987828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2330a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2331a30f8f8cSSatish Balay     nz = procsnz[0];
2332a30f8f8cSSatish Balay     vals = buf;
2333a30f8f8cSSatish Balay     mycols = ibuf;
2334a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2335a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2336a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2337a30f8f8cSSatish Balay 
2338a30f8f8cSSatish Balay     /* insert into matrix */
2339a30f8f8cSSatish Balay     jj      = rstart*bs;
2340a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23417e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2342a30f8f8cSSatish Balay       mycols += locrowlens[i];
2343a30f8f8cSSatish Balay       vals   += locrowlens[i];
2344a30f8f8cSSatish Balay       jj++;
2345a30f8f8cSSatish Balay     }
23467e06b45fSHong Zhang 
2347a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2348a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2349a30f8f8cSSatish Balay       nz   = procsnz[i];
2350a30f8f8cSSatish Balay       vals = buf;
2351a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2352a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2353a30f8f8cSSatish Balay     }
2354a30f8f8cSSatish Balay     /* the last proc */
2355a30f8f8cSSatish Balay     if (size != 1){
2356a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2357a30f8f8cSSatish Balay       vals = buf;
2358a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2359a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2360a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2361a30f8f8cSSatish Balay     }
2362a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23637e06b45fSHong Zhang 
2364a30f8f8cSSatish Balay   } else {
2365a30f8f8cSSatish Balay     /* receive numeric values */
236687828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2367a30f8f8cSSatish Balay 
2368a30f8f8cSSatish Balay     /* receive message of values*/
2369a30f8f8cSSatish Balay     vals   = buf;
2370a30f8f8cSSatish Balay     mycols = ibuf;
2371a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2372a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
237329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2374a30f8f8cSSatish Balay 
2375a30f8f8cSSatish Balay     /* insert into matrix */
2376a30f8f8cSSatish Balay     jj      = rstart*bs;
2377a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2378a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2379a30f8f8cSSatish Balay       mycols += locrowlens[i];
2380a30f8f8cSSatish Balay       vals   += locrowlens[i];
2381a30f8f8cSSatish Balay       jj++;
2382a30f8f8cSSatish Balay     }
2383a30f8f8cSSatish Balay   }
23847e06b45fSHong Zhang 
2385a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2386a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2387a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2388a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2389a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2390a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2391a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2392a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239322191285SKris Buschelman   *newmat = A;
2394a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2395a30f8f8cSSatish Balay }
2396a30f8f8cSSatish Balay 
23974a2ae208SSatish Balay #undef __FUNCT__
23984a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2399dcf5cc72SBarry Smith /*XXXXX@
2400a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2401a30f8f8cSSatish Balay 
2402a30f8f8cSSatish Balay    Input Parameters:
2403a30f8f8cSSatish Balay .  mat  - the matrix
2404a30f8f8cSSatish Balay .  fact - factor
2405a30f8f8cSSatish Balay 
2406a30f8f8cSSatish Balay    Collective on Mat
2407a30f8f8cSSatish Balay 
2408a30f8f8cSSatish Balay    Level: advanced
2409a30f8f8cSSatish Balay 
2410a30f8f8cSSatish Balay   Notes:
2411a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2412a30f8f8cSSatish Balay 
2413a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2414a30f8f8cSSatish Balay 
2415a30f8f8cSSatish Balay .seealso: MatSetOption()
2416dcf5cc72SBarry Smith @XXXXX*/
2417dcf5cc72SBarry Smith 
241824d5174aSHong Zhang 
24194a2ae208SSatish Balay #undef __FUNCT__
24204a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2421dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
242224d5174aSHong Zhang {
242324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2424f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2425ca54ac64SHong Zhang   PetscReal      atmp;
242687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2427dfbe8321SBarry Smith   PetscErrorCode ierr;
24281302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24291302d50aSBarry Smith   PetscMPIInt    rank,size;
24301302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
243187828ca2SBarry Smith   PetscScalar    *va;
24328a1c53f2SBarry Smith   MatScalar      *ba;
2433f4c0e9e4SHong Zhang   MPI_Status     stat;
243424d5174aSHong Zhang 
243524d5174aSHong Zhang   PetscFunctionBegin;
2436d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24371ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2438f4c0e9e4SHong Zhang 
243956faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
244056faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2441f4c0e9e4SHong Zhang 
2442899cda47SBarry Smith   bs   = A->rmap.bs;
2443f4c0e9e4SHong Zhang   mbs  = a->mbs;
2444f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2445f4c0e9e4SHong Zhang   ba   = b->a;
2446f4c0e9e4SHong Zhang   bi   = b->i;
2447f4c0e9e4SHong Zhang   bj   = b->j;
2448f4c0e9e4SHong Zhang 
2449f4c0e9e4SHong Zhang   /* find ownerships */
2450899cda47SBarry Smith   rowners_bs = A->rmap.range;
2451f4c0e9e4SHong Zhang 
2452f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245382502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2454ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2455f4c0e9e4SHong Zhang 
2456f4c0e9e4SHong Zhang   /* row_max for B */
2457b8475685SHong Zhang   if (rank != size-1){
2458f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2459f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2460f4c0e9e4SHong Zhang       brow  = bs*i;
2461f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2462f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2463f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2464ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2466f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2467f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2468ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2469ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2470f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2471f4c0e9e4SHong Zhang           }
2472f4c0e9e4SHong Zhang         }
2473f4c0e9e4SHong Zhang         bj++;
2474f4c0e9e4SHong Zhang       }
2475f4c0e9e4SHong Zhang     }
2476f4c0e9e4SHong Zhang 
2477f4c0e9e4SHong Zhang     /* send values to its owners */
2478f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2479f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2480ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
248156faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2482ca54ac64SHong Zhang     }
2483f4c0e9e4SHong Zhang   }
2484f4c0e9e4SHong Zhang 
2485f4c0e9e4SHong Zhang   /* receive values */
2486ca54ac64SHong Zhang   if (rank){
2487f4c0e9e4SHong Zhang     rvalues = work;
2488ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2489f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
249056faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2491f4c0e9e4SHong Zhang       /* process values */
2492f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2493ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2494f4c0e9e4SHong Zhang       }
2495f4c0e9e4SHong Zhang     }
2496ca54ac64SHong Zhang   }
2497f4c0e9e4SHong Zhang 
24981ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2499ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
250024d5174aSHong Zhang   PetscFunctionReturn(0);
250124d5174aSHong Zhang }
25022798e883SHong Zhang 
25032798e883SHong Zhang #undef __FUNCT__
25042798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
25051302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25062798e883SHong Zhang {
25072798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2508dfbe8321SBarry Smith   PetscErrorCode ierr;
2509899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2510efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2511ffe4fb16SHong Zhang   Vec            bb1;
2512ffe4fb16SHong Zhang 
2513ffe4fb16SHong Zhang   PetscFunctionBegin;
251477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2515ffe4fb16SHong Zhang   if (bs > 1)
2516ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2517ffe4fb16SHong Zhang 
2518ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2519ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2520ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2521ffe4fb16SHong Zhang       its--;
2522ffe4fb16SHong Zhang     }
2523ffe4fb16SHong Zhang 
2524ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2525ffe4fb16SHong Zhang     while (its--){
2526ffe4fb16SHong Zhang 
2527ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2528ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2529ffe4fb16SHong Zhang 
2530ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25311ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25321ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2533ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25341ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2535ffe4fb16SHong Zhang 
2536efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2537ffe4fb16SHong Zhang 
2538ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25391ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25401ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2541ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25421ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2543ffe4fb16SHong Zhang 
2544ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25452dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2546ffe4fb16SHong Zhang 
2547ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25481ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25491ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2550ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2551ffe4fb16SHong Zhang 
2552ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2553ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2554ffe4fb16SHong Zhang 
2555ffe4fb16SHong Zhang       /* local diagonal sweep */
2556ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2557ffe4fb16SHong Zhang     }
2558ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2559ffe4fb16SHong Zhang   } else {
2560ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2561ffe4fb16SHong Zhang   }
2562ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2563ffe4fb16SHong Zhang }
2564ffe4fb16SHong Zhang 
2565ffe4fb16SHong Zhang #undef __FUNCT__
2566ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25671302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2568ffe4fb16SHong Zhang {
2569ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2570dfbe8321SBarry Smith   PetscErrorCode ierr;
25712798e883SHong Zhang   Vec            lvec1,bb1;
25722798e883SHong Zhang 
25732798e883SHong Zhang   PetscFunctionBegin;
257477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2575899cda47SBarry Smith   if (matin->rmap.bs > 1)
25762798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25772798e883SHong Zhang 
2578c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25792798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2580bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25812798e883SHong Zhang       its--;
25822798e883SHong Zhang     }
25832798e883SHong Zhang 
25842798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25852798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25862798e883SHong Zhang     while (its--){
25872798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25882798e883SHong Zhang 
25892798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25902798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2591efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
25922798e883SHong Zhang 
25932798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25942798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25952798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25962798e883SHong Zhang 
25972798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2598efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25992798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26002798e883SHong Zhang 
26012798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26022798e883SHong Zhang 
2603c14dc6b6SHong Zhang       /* diagonal sweep */
2604bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26052798e883SHong Zhang     }
26062798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26072798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2608c14dc6b6SHong Zhang   } else {
2609c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2610c14dc6b6SHong Zhang   }
26112798e883SHong Zhang   PetscFunctionReturn(0);
26122798e883SHong Zhang }
26132798e883SHong Zhang 
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