1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103e6b907acSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew); \ 104a30f8f8cSSatish Balay N = nrow++ - 1; \ 105a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 106a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 107a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 108a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 111a30f8f8cSSatish Balay rp[_i] = bcol; \ 112a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 113a30f8f8cSSatish Balay a_noinsert:; \ 114a30f8f8cSSatish Balay ailen[brow] = nrow; \ 115a30f8f8cSSatish Balay } 116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 117a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 118a30f8f8cSSatish Balay { \ 119a30f8f8cSSatish Balay brow = row/bs; \ 120a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 121a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 122a30f8f8cSSatish Balay bcol = col/bs; \ 123a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 124a30f8f8cSSatish Balay low = 0; high = nrow; \ 125a30f8f8cSSatish Balay while (high-low > 3) { \ 126a30f8f8cSSatish Balay t = (low+high)/2; \ 127a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 128a30f8f8cSSatish Balay else low = t; \ 129a30f8f8cSSatish Balay } \ 130a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 131a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 132a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 133a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 134a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 135a30f8f8cSSatish Balay else *bap = value; \ 136a30f8f8cSSatish Balay goto b_noinsert; \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay } \ 139a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 140085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 141e6b907acSBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew); \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay b_noinsert:; \ 152a30f8f8cSSatish Balay bilen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #endif 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 160a30f8f8cSSatish Balay { 161a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 162dfbe8321SBarry Smith PetscErrorCode ierr; 1631302d50aSBarry Smith PetscInt i,N = m*n; 164a30f8f8cSSatish Balay MatScalar *vsingle; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16805b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 170a30f8f8cSSatish Balay b->setvalueslen = N; 171a30f8f8cSSatish Balay } 172a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 173a30f8f8cSSatish Balay 174a30f8f8cSSatish Balay for (i=0; i<N; i++) { 175a30f8f8cSSatish Balay vsingle[i] = v[i]; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 178a30f8f8cSSatish Balay PetscFunctionReturn(0); 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 1814a2ae208SSatish Balay #undef __FUNCT__ 1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 184a30f8f8cSSatish Balay { 185a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 186dfbe8321SBarry Smith PetscErrorCode ierr; 1871302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 188a30f8f8cSSatish Balay MatScalar *vsingle; 189a30f8f8cSSatish Balay 190a30f8f8cSSatish Balay PetscFunctionBegin; 191a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19205b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 194a30f8f8cSSatish Balay b->setvalueslen = N; 195a30f8f8cSSatish Balay } 196a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 197a30f8f8cSSatish Balay for (i=0; i<N; i++) { 198a30f8f8cSSatish Balay vsingle[i] = v[i]; 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 201a30f8f8cSSatish Balay PetscFunctionReturn(0); 202a30f8f8cSSatish Balay } 203a30f8f8cSSatish Balay #endif 204a30f8f8cSSatish Balay 205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 206a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 207a30f8f8cSSatish Balay */ 2084a2ae208SSatish Balay #undef __FUNCT__ 209be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar" 2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 211a30f8f8cSSatish Balay { 212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 213a30f8f8cSSatish Balay MatScalar value; 214b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 215dfbe8321SBarry Smith PetscErrorCode ierr; 2161302d50aSBarry Smith PetscInt i,j,row,col; 217899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 218899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 219899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay /* Some Variables required in the macro */ 222a30f8f8cSSatish Balay Mat A = baij->A; 223a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2241302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 225a30f8f8cSSatish Balay MatScalar *aa=a->a; 226a30f8f8cSSatish Balay 227a30f8f8cSSatish Balay Mat B = baij->B; 228a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2291302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 230a30f8f8cSSatish Balay MatScalar *ba=b->a; 231a30f8f8cSSatish Balay 2321302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2331302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 234a30f8f8cSSatish Balay MatScalar *ap,*bap; 235a30f8f8cSSatish Balay 236a30f8f8cSSatish Balay /* for stash */ 237910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 238910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay if (!baij->donotstash){ 24359ffdab8SBarry Smith if (n > baij->n_loc) { 24459ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 24559ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 24659ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 24759ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 24859ffdab8SBarry Smith baij->n_loc = n; 24959ffdab8SBarry Smith } 25059ffdab8SBarry Smith in_loc = baij->in_loc; 25159ffdab8SBarry Smith v_loc = baij->v_loc; 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 254a30f8f8cSSatish Balay for (i=0; i<m; i++) { 255a30f8f8cSSatish Balay if (im[i] < 0) continue; 2562515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 257899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 258a30f8f8cSSatish Balay #endif 259a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 260a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 261a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 26301b2bd88SHong Zhang if (a->ignore_ltriangular){ 26401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26501b2bd88SHong Zhang } else { 26601b2bd88SHong Zhang SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)"); 26701b2bd88SHong Zhang } 26801b2bd88SHong Zhang } 269a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 270a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 271a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 272a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 273a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 274a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 275a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 276a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2772515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 278899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 279a30f8f8cSSatish Balay #endif 280a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 281a30f8f8cSSatish Balay if (mat->was_assembled) { 282a30f8f8cSSatish Balay if (!baij->colmap) { 283653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 284a30f8f8cSSatish Balay } 285a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 286a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28771730473SSatish Balay col = col - 1; 288a30f8f8cSSatish Balay #else 28971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 290a30f8f8cSSatish Balay #endif 291a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 292a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 293a30f8f8cSSatish Balay col = in[j]; 294a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 295a30f8f8cSSatish Balay B = baij->B; 296a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 297a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 298a30f8f8cSSatish Balay ba=b->a; 29971730473SSatish Balay } else col += in[j]%bs; 300a30f8f8cSSatish Balay } else col = in[j]; 301a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 302a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 303a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay } else { /* off processor entry */ 307a30f8f8cSSatish Balay if (!baij->donotstash) { 308a30f8f8cSSatish Balay n_loc = 0; 309a30f8f8cSSatish Balay for (j=0; j<n; j++){ 310f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 311a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 312a30f8f8cSSatish Balay if (roworiented) { 313a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 314a30f8f8cSSatish Balay } else { 315a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay n_loc++; 318a30f8f8cSSatish Balay } 319a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay } 323a30f8f8cSSatish Balay PetscFunctionReturn(0); 324a30f8f8cSSatish Balay } 325a30f8f8cSSatish Balay 3264a2ae208SSatish Balay #undef __FUNCT__ 327e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3281302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 329a30f8f8cSSatish Balay { 3300880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 331f15d580aSBarry Smith const MatScalar *value; 332f15d580aSBarry Smith MatScalar *barray=baij->barray; 3330880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 334dfbe8321SBarry Smith PetscErrorCode ierr; 335899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 336899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 337899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3380880e062SHong Zhang 339a30f8f8cSSatish Balay PetscFunctionBegin; 3400880e062SHong Zhang if(!barray) { 3410880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3420880e062SHong Zhang baij->barray = barray; 3430880e062SHong Zhang } 3440880e062SHong Zhang 3450880e062SHong Zhang if (roworiented) { 3460880e062SHong Zhang stepval = (n-1)*bs; 3470880e062SHong Zhang } else { 3480880e062SHong Zhang stepval = (m-1)*bs; 3490880e062SHong Zhang } 3500880e062SHong Zhang for (i=0; i<m; i++) { 3510880e062SHong Zhang if (im[i] < 0) continue; 3522515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35377431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3540880e062SHong Zhang #endif 3550880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3560880e062SHong Zhang row = im[i] - rstart; 3570880e062SHong Zhang for (j=0; j<n; j++) { 3580880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3590880e062SHong Zhang if ((roworiented) && (n == 1)) { 360f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3610880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 362f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3630880e062SHong Zhang } else { /* Here a copy is required */ 3640880e062SHong Zhang if (roworiented) { 3650880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3660880e062SHong Zhang } else { 3670880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3680880e062SHong Zhang } 3690880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3700880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3710880e062SHong Zhang *barray++ = *value++; 3720880e062SHong Zhang } 3730880e062SHong Zhang } 3740880e062SHong Zhang barray -=bs2; 3750880e062SHong Zhang } 3760880e062SHong Zhang 3770880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3780880e062SHong Zhang col = in[j] - cstart; 3790880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3800880e062SHong Zhang } 3810880e062SHong Zhang else if (in[j] < 0) continue; 3822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38377431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3840880e062SHong Zhang #endif 3850880e062SHong Zhang else { 3860880e062SHong Zhang if (mat->was_assembled) { 3870880e062SHong Zhang if (!baij->colmap) { 388653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3890880e062SHong Zhang } 3900880e062SHong Zhang 3912515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3920880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3931302d50aSBarry Smith { PetscInt data; 3940880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3950880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3960880e062SHong Zhang } 3970880e062SHong Zhang #else 3980880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3990880e062SHong Zhang #endif 4000880e062SHong Zhang #endif 4010880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4020880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4030880e062SHong Zhang col = (col - 1)/bs; 4040880e062SHong Zhang #else 4050880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4060880e062SHong Zhang #endif 4070880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4080880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4090880e062SHong Zhang col = in[j]; 4100880e062SHong Zhang } 4110880e062SHong Zhang } 4120880e062SHong Zhang else col = in[j]; 413e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4140880e062SHong Zhang } 4150880e062SHong Zhang } 4160880e062SHong Zhang } else { 4170880e062SHong Zhang if (!baij->donotstash) { 4180880e062SHong Zhang if (roworiented) { 4190880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4200880e062SHong Zhang } else { 4210880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang } 4250880e062SHong Zhang } 4260880e062SHong Zhang PetscFunctionReturn(0); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay 4294a2ae208SSatish Balay #undef __FUNCT__ 4304a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4311302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 432a30f8f8cSSatish Balay { 433f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4346849ba73SBarry Smith PetscErrorCode ierr; 435899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 436899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 437a30f8f8cSSatish Balay 438a30f8f8cSSatish Balay PetscFunctionBegin; 439a30f8f8cSSatish Balay for (i=0; i<m; i++) { 44077431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 441899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 442a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 443a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 444a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44577431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 446899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 447a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 448a30f8f8cSSatish Balay col = idxn[j] - bscstart; 449c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 450a30f8f8cSSatish Balay } else { 451a30f8f8cSSatish Balay if (!baij->colmap) { 452653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 453a30f8f8cSSatish Balay } 454a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 455a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 456a30f8f8cSSatish Balay data --; 457a30f8f8cSSatish Balay #else 458a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 459a30f8f8cSSatish Balay #endif 460a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 461a30f8f8cSSatish Balay else { 462a30f8f8cSSatish Balay col = data + idxn[j]%bs; 463e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } 466a30f8f8cSSatish Balay } 467a30f8f8cSSatish Balay } else { 46829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 469a30f8f8cSSatish Balay } 470a30f8f8cSSatish Balay } 471a30f8f8cSSatish Balay PetscFunctionReturn(0); 472a30f8f8cSSatish Balay } 473a30f8f8cSSatish Balay 4744a2ae208SSatish Balay #undef __FUNCT__ 4754a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 476dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 477a30f8f8cSSatish Balay { 478a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 479dfbe8321SBarry Smith PetscErrorCode ierr; 480a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 481a30f8f8cSSatish Balay 482a30f8f8cSSatish Balay PetscFunctionBegin; 483a30f8f8cSSatish Balay if (baij->size == 1) { 484a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 485a30f8f8cSSatish Balay } else { 486a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 487f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 488a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 489a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 490a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 491a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 492d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 493a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 494a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4950b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4960b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4970b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4980b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 499899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 500899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 5010b8dc8d2SHong Zhang MatScalar *v; 5020b8dc8d2SHong Zhang 503899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 504899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 505899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5060b8dc8d2SHong Zhang /* Amat */ 5070b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5080b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5090b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5100b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5110b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5120b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5130b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5140b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5150b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5160b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5170b8dc8d2SHong Zhang /* non-diagonal block */ 5180b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang } 5220b8dc8d2SHong Zhang } 5230b8dc8d2SHong Zhang /* Bmat */ 5240b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5250b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5260b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5270b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5280b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5290b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5300b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5310b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5320b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5330b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5340b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang } 5380b8dc8d2SHong Zhang } 539899cda47SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5400b8dc8d2SHong Zhang *norm = 0.0; 541899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5420b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5430b8dc8d2SHong Zhang } 5440b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 545a30f8f8cSSatish Balay } else { 54629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay } 549a30f8f8cSSatish Balay PetscFunctionReturn(0); 550a30f8f8cSSatish Balay } 551a30f8f8cSSatish Balay 5524a2ae208SSatish Balay #undef __FUNCT__ 5534a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 554dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 555a30f8f8cSSatish Balay { 556a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 557dfbe8321SBarry Smith PetscErrorCode ierr; 5581302d50aSBarry Smith PetscInt nstash,reallocs; 559a30f8f8cSSatish Balay InsertMode addv; 560a30f8f8cSSatish Balay 561a30f8f8cSSatish Balay PetscFunctionBegin; 562a30f8f8cSSatish Balay if (baij->donotstash) { 563a30f8f8cSSatish Balay PetscFunctionReturn(0); 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay 566a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 567a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 568a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 572a30f8f8cSSatish Balay 573899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 574899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 575a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 576ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 577a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 578ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 579a30f8f8cSSatish Balay PetscFunctionReturn(0); 580a30f8f8cSSatish Balay } 581a30f8f8cSSatish Balay 5824a2ae208SSatish Balay #undef __FUNCT__ 5834a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 584dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 585a30f8f8cSSatish Balay { 586a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 587a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5886849ba73SBarry Smith PetscErrorCode ierr; 58913f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5901302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 59113f74950SBarry Smith PetscMPIInt n; 592a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 593a30f8f8cSSatish Balay MatScalar *val; 594a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 595a30f8f8cSSatish Balay 59691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay 599a30f8f8cSSatish Balay if (!baij->donotstash) { 600a30f8f8cSSatish Balay while (1) { 601a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 602a30f8f8cSSatish Balay if (!flg) break; 603a30f8f8cSSatish Balay 604a30f8f8cSSatish Balay for (i=0; i<n;) { 605a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 606a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 607a30f8f8cSSatish Balay if (j < n) ncols = j-i; 608a30f8f8cSSatish Balay else ncols = n-i; 609a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 610a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 611a30f8f8cSSatish Balay i = j; 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay } 614a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 615a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 616a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 617a30f8f8cSSatish Balay restore the original flags */ 618a30f8f8cSSatish Balay r1 = baij->roworiented; 619a30f8f8cSSatish Balay r2 = a->roworiented; 62091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 621a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 622a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 62391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 624a30f8f8cSSatish Balay while (1) { 625a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 626a30f8f8cSSatish Balay if (!flg) break; 627a30f8f8cSSatish Balay 628a30f8f8cSSatish Balay for (i=0; i<n;) { 629a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 630a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 631a30f8f8cSSatish Balay if (j < n) ncols = j-i; 632a30f8f8cSSatish Balay else ncols = n-i; 633a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 634a30f8f8cSSatish Balay i = j; 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay } 637a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 638a30f8f8cSSatish Balay baij->roworiented = r1; 639a30f8f8cSSatish Balay a->roworiented = r2; 64091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay 643a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 644a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 645a30f8f8cSSatish Balay 646a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 647a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 648a30f8f8cSSatish Balay /* 649a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 650a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 651a30f8f8cSSatish Balay */ 652a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 653a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 654a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 655c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay } 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 66040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 661a30f8f8cSSatish Balay } 66291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 663a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 664a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 665a30f8f8cSSatish Balay 666a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 667a30f8f8cSSatish Balay baij->rowvalues = 0; 6685222a1afSHong Zhang 669a30f8f8cSSatish Balay PetscFunctionReturn(0); 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay 6724a2ae208SSatish Balay #undef __FUNCT__ 6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6791302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68032077d6dSBarry Smith PetscTruth iascii,isdraw; 681b0a32e0cSBarry Smith PetscViewer sviewer; 682f3ef73ceSBarry Smith PetscViewerFormat format; 683a30f8f8cSSatish Balay 684a30f8f8cSSatish Balay PetscFunctionBegin; 68532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 686fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68732077d6dSBarry Smith if (iascii) { 688b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 690a30f8f8cSSatish Balay MatInfo info; 691a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 694899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 695899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 701a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 702a30f8f8cSSatish Balay PetscFunctionReturn(0); 703fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 705a30f8f8cSSatish Balay PetscFunctionReturn(0); 706c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 707c1490034SHong Zhang PetscFunctionReturn(0); 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay 711a30f8f8cSSatish Balay if (isdraw) { 712b0a32e0cSBarry Smith PetscDraw draw; 713a30f8f8cSSatish Balay PetscTruth isnull; 714b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay 718a30f8f8cSSatish Balay if (size == 1) { 719e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay } else { 722a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 723a30f8f8cSSatish Balay Mat A; 72465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 726899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 727a30f8f8cSSatish Balay MatScalar *a; 728a30f8f8cSSatish Balay 729f204ca49SKris Buschelman /* Should this be the same type as mat? */ 730f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 731a30f8f8cSSatish Balay if (!rank) { 732f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 733a30f8f8cSSatish Balay } else { 734f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 735a30f8f8cSSatish Balay } 736f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 737899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 739a30f8f8cSSatish Balay 740a30f8f8cSSatish Balay /* copy over the A part */ 74165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 742a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7431302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 746*e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 747a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 748a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 749*e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 750a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 751a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 752a30f8f8cSSatish Balay col++; a += bs; 753a30f8f8cSSatish Balay } 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay /* copy over the B part */ 75765d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75865d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 759a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 760*e9f7bc9eSHong Zhang 761*e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 762a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 763a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 764a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 765a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 766*e9f7bc9eSHong Zhang ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 767a30f8f8cSSatish Balay col++; a += bs; 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 773a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 774a30f8f8cSSatish Balay /* 775a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 776b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 777a30f8f8cSSatish Balay */ 778b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77965d70643SHong Zhang if (!rank) { 780e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 781a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 782a30f8f8cSSatish Balay } 783b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 784a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 785a30f8f8cSSatish Balay } 786a30f8f8cSSatish Balay PetscFunctionReturn(0); 787a30f8f8cSSatish Balay } 788a30f8f8cSSatish Balay 7894a2ae208SSatish Balay #undef __FUNCT__ 7904a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 791dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 792a30f8f8cSSatish Balay { 793dfbe8321SBarry Smith PetscErrorCode ierr; 79432077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 795a30f8f8cSSatish Balay 796a30f8f8cSSatish Balay PetscFunctionBegin; 79732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 798fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 799b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 800fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80132077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 802a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 803a30f8f8cSSatish Balay } else { 8041302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 805a30f8f8cSSatish Balay } 806a30f8f8cSSatish Balay PetscFunctionReturn(0); 807a30f8f8cSSatish Balay } 808a30f8f8cSSatish Balay 8094a2ae208SSatish Balay #undef __FUNCT__ 8104a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 811dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 812a30f8f8cSSatish Balay { 813a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 815a30f8f8cSSatish Balay 816a30f8f8cSSatish Balay PetscFunctionBegin; 817a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 818899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 819a30f8f8cSSatish Balay #endif 820a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 822a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 824a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 825a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 826a30f8f8cSSatish Balay #else 82705b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 828a30f8f8cSSatish Balay #endif 82905b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 830a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 831a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83240781036SHong Zhang if (baij->slvec0) { 83340781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83440781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83540781036SHong Zhang } 83640781036SHong Zhang if (baij->slvec1) { 83740781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83840781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83940781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 84040781036SHong Zhang } 84140781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 84205b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 845a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84605b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 847a30f8f8cSSatish Balay #endif 84859ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 84959ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 850899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 851a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 852901853e0SKris Buschelman 853901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 854901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 855901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 856901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 857a30f8f8cSSatish Balay PetscFunctionReturn(0); 858a30f8f8cSSatish Balay } 859a30f8f8cSSatish Balay 8604a2ae208SSatish Balay #undef __FUNCT__ 861a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 862dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 863a9d4b620SHong Zhang { 864a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 865dfbe8321SBarry Smith PetscErrorCode ierr; 866899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 867a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 868a9d4b620SHong Zhang 869a9d4b620SHong Zhang PetscFunctionBegin; 870a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 871899cda47SBarry Smith if (nt != A->cmap.n) { 872a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 873a9d4b620SHong Zhang } 874a9d4b620SHong Zhang 875a9d4b620SHong Zhang /* diagonal part */ 876a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8772dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 878a9d4b620SHong Zhang 879a9d4b620SHong Zhang /* subdiagonal part */ 880a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 881899cda47SBarry Smith CHKMEMQ; 882a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8831ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8841ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 885899cda47SBarry Smith CHKMEMQ; 886a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 887899cda47SBarry Smith CHKMEMQ; 8881ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 889a9d4b620SHong Zhang 890899cda47SBarry Smith CHKMEMQ; 891a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 892899cda47SBarry Smith CHKMEMQ; 8931ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 894899cda47SBarry Smith CHKMEMQ; 895a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 896899cda47SBarry Smith CHKMEMQ; 897a9d4b620SHong Zhang /* supperdiagonal part */ 898a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 899899cda47SBarry Smith CHKMEMQ; 900a9d4b620SHong Zhang PetscFunctionReturn(0); 901a9d4b620SHong Zhang } 902a9d4b620SHong Zhang 903a9d4b620SHong Zhang #undef __FUNCT__ 90440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 905dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 906a30f8f8cSSatish Balay { 907a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 908dfbe8321SBarry Smith PetscErrorCode ierr; 9091302d50aSBarry Smith PetscInt nt; 910a30f8f8cSSatish Balay 911a30f8f8cSSatish Balay PetscFunctionBegin; 912a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 913899cda47SBarry Smith if (nt != A->cmap.n) { 91429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 915a30f8f8cSSatish Balay } 916a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 917899cda47SBarry Smith if (nt != A->rmap.N) { 91829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 919a30f8f8cSSatish Balay } 92065d70643SHong Zhang 921b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 922b941877fSHong Zhang /* do diagonal part */ 923b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 924b941877fSHong Zhang /* do supperdiagonal part */ 925b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 926b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 927b941877fSHong Zhang /* do subdiagonal part */ 928b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 929b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 930b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 93165d70643SHong Zhang 932a30f8f8cSSatish Balay PetscFunctionReturn(0); 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay 9354a2ae208SSatish Balay #undef __FUNCT__ 9364a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 937dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 938a30f8f8cSSatish Balay { 939de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 940dfbe8321SBarry Smith PetscErrorCode ierr; 941899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 942a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 943a9d4b620SHong Zhang 944a9d4b620SHong Zhang PetscFunctionBegin; 945a9d4b620SHong Zhang /* 94656faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 94756faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 948a9d4b620SHong Zhang */ 949a9d4b620SHong Zhang /* diagonal part */ 950a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9512dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 952a9d4b620SHong Zhang 953a9d4b620SHong Zhang /* subdiagonal part */ 954a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 955a9d4b620SHong Zhang 956a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9571ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9581ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 959a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9601ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 961a9d4b620SHong Zhang 962a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9631ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 964a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 965a9d4b620SHong Zhang 966a9d4b620SHong Zhang /* supperdiagonal part */ 967a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 968a9d4b620SHong Zhang 969a9d4b620SHong Zhang PetscFunctionReturn(0); 970a9d4b620SHong Zhang } 971a9d4b620SHong Zhang 972a9d4b620SHong Zhang #undef __FUNCT__ 973a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 974dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 975a9d4b620SHong Zhang { 976a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 977dfbe8321SBarry Smith PetscErrorCode ierr; 978a30f8f8cSSatish Balay 979a30f8f8cSSatish Balay PetscFunctionBegin; 980b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 981b941877fSHong Zhang /* do diagonal part */ 982b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 983b941877fSHong Zhang /* do supperdiagonal part */ 984b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 985de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 986de8b6608SHong Zhang 987b941877fSHong Zhang /* do subdiagonal part */ 988a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 989a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 990a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 991aa482183SHong Zhang 992a30f8f8cSSatish Balay PetscFunctionReturn(0); 993a30f8f8cSSatish Balay } 994a30f8f8cSSatish Balay 995a30f8f8cSSatish Balay /* 996a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 997a30f8f8cSSatish Balay diagonal block 998a30f8f8cSSatish Balay */ 9994a2ae208SSatish Balay #undef __FUNCT__ 10004a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1001dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1002a30f8f8cSSatish Balay { 1003a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1004dfbe8321SBarry Smith PetscErrorCode ierr; 1005a30f8f8cSSatish Balay 1006a30f8f8cSSatish Balay PetscFunctionBegin; 1007899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1008a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1009a30f8f8cSSatish Balay PetscFunctionReturn(0); 1010a30f8f8cSSatish Balay } 1011a30f8f8cSSatish Balay 10124a2ae208SSatish Balay #undef __FUNCT__ 10134a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1014f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1015a30f8f8cSSatish Balay { 1016a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1017dfbe8321SBarry Smith PetscErrorCode ierr; 1018a30f8f8cSSatish Balay 1019a30f8f8cSSatish Balay PetscFunctionBegin; 1020f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1021f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1022a30f8f8cSSatish Balay PetscFunctionReturn(0); 1023a30f8f8cSSatish Balay } 1024a30f8f8cSSatish Balay 10254a2ae208SSatish Balay #undef __FUNCT__ 10264a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10271302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1028a30f8f8cSSatish Balay { 1029d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1030d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1031d0d4cfc2SHong Zhang PetscErrorCode ierr; 1032899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1033899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1034899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1035d0d4cfc2SHong Zhang 1036a30f8f8cSSatish Balay PetscFunctionBegin; 1037d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1038d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1039d0d4cfc2SHong Zhang 1040d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1041d0d4cfc2SHong Zhang /* 1042d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1043d0d4cfc2SHong Zhang */ 1044d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1045d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1046d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1047d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1048d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1049d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1052d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang 1055d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1056d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1057d0d4cfc2SHong Zhang 1058d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1059d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1060d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1061d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1062d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1063d0d4cfc2SHong Zhang nztot = nzA + nzB; 1064d0d4cfc2SHong Zhang 1065d0d4cfc2SHong Zhang cmap = mat->garray; 1066d0d4cfc2SHong Zhang if (v || idx) { 1067d0d4cfc2SHong Zhang if (nztot) { 1068d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1069d0d4cfc2SHong Zhang PetscInt imark = -1; 1070d0d4cfc2SHong Zhang if (v) { 1071d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1072d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1073d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1074d0d4cfc2SHong Zhang else break; 1075d0d4cfc2SHong Zhang } 1076d0d4cfc2SHong Zhang imark = i; 1077d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1078d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1079d0d4cfc2SHong Zhang } 1080d0d4cfc2SHong Zhang if (idx) { 1081d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1082d0d4cfc2SHong Zhang if (imark > -1) { 1083d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1084d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1085d0d4cfc2SHong Zhang } 1086d0d4cfc2SHong Zhang } else { 1087d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1088d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1089d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1090d0d4cfc2SHong Zhang else break; 1091d0d4cfc2SHong Zhang } 1092d0d4cfc2SHong Zhang imark = i; 1093d0d4cfc2SHong Zhang } 1094d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1095d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1096d0d4cfc2SHong Zhang } 1097d0d4cfc2SHong Zhang } else { 1098d0d4cfc2SHong Zhang if (idx) *idx = 0; 1099d0d4cfc2SHong Zhang if (v) *v = 0; 1100d0d4cfc2SHong Zhang } 1101d0d4cfc2SHong Zhang } 1102d0d4cfc2SHong Zhang *nz = nztot; 1103d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1104d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1105a30f8f8cSSatish Balay PetscFunctionReturn(0); 1106a30f8f8cSSatish Balay } 1107a30f8f8cSSatish Balay 11084a2ae208SSatish Balay #undef __FUNCT__ 11094a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11101302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1111a30f8f8cSSatish Balay { 1112a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1113a30f8f8cSSatish Balay 1114a30f8f8cSSatish Balay PetscFunctionBegin; 1115abc0a331SBarry Smith if (!baij->getrowactive) { 1116abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1119a30f8f8cSSatish Balay PetscFunctionReturn(0); 1120a30f8f8cSSatish Balay } 1121a30f8f8cSSatish Balay 11224a2ae208SSatish Balay #undef __FUNCT__ 1123d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1124d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1125d0d4cfc2SHong Zhang { 1126d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1127d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1128d0d4cfc2SHong Zhang 1129d0d4cfc2SHong Zhang PetscFunctionBegin; 1130d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1131d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1132d0d4cfc2SHong Zhang } 1133d0d4cfc2SHong Zhang #undef __FUNCT__ 1134d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1135d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1136d0d4cfc2SHong Zhang { 1137d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1138d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1139d0d4cfc2SHong Zhang 1140d0d4cfc2SHong Zhang PetscFunctionBegin; 1141d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1142d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1143d0d4cfc2SHong Zhang } 1144d0d4cfc2SHong Zhang 1145d0d4cfc2SHong Zhang #undef __FUNCT__ 114699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 114899cafbc1SBarry Smith { 114999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115099cafbc1SBarry Smith PetscErrorCode ierr; 115199cafbc1SBarry Smith 115299cafbc1SBarry Smith PetscFunctionBegin; 115399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115599cafbc1SBarry Smith PetscFunctionReturn(0); 115699cafbc1SBarry Smith } 115799cafbc1SBarry Smith 115899cafbc1SBarry Smith #undef __FUNCT__ 115999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 116099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 116199cafbc1SBarry Smith { 116299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 116399cafbc1SBarry Smith PetscErrorCode ierr; 116499cafbc1SBarry Smith 116599cafbc1SBarry Smith PetscFunctionBegin; 116699cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116799cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 116899cafbc1SBarry Smith PetscFunctionReturn(0); 116999cafbc1SBarry Smith } 117099cafbc1SBarry Smith 117199cafbc1SBarry Smith #undef __FUNCT__ 11724a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1173dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1174a30f8f8cSSatish Balay { 1175a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1176dfbe8321SBarry Smith PetscErrorCode ierr; 1177a30f8f8cSSatish Balay 1178a30f8f8cSSatish Balay PetscFunctionBegin; 1179a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1180a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1181a30f8f8cSSatish Balay PetscFunctionReturn(0); 1182a30f8f8cSSatish Balay } 1183a30f8f8cSSatish Balay 11844a2ae208SSatish Balay #undef __FUNCT__ 11854a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1186dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1187a30f8f8cSSatish Balay { 1188a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1189a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1190dfbe8321SBarry Smith PetscErrorCode ierr; 1191a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1192a30f8f8cSSatish Balay 1193a30f8f8cSSatish Balay PetscFunctionBegin; 1194899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1195a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1196a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1197a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1198a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1199a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1200a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1201a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1202a30f8f8cSSatish Balay info->nz_used = isend[0]; 1203a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1204a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1205a30f8f8cSSatish Balay info->memory = isend[3]; 1206a30f8f8cSSatish Balay info->mallocs = isend[4]; 1207a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1208d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1209a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1210a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1211a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1212a30f8f8cSSatish Balay info->memory = irecv[3]; 1213a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1214a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1215d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1216a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1217a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1218a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1219a30f8f8cSSatish Balay info->memory = irecv[3]; 1220a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1221a30f8f8cSSatish Balay } else { 122277431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1223a30f8f8cSSatish Balay } 1224899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1225899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1226899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1227899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1228a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1229a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1230a30f8f8cSSatish Balay info->factor_mallocs = 0; 1231a30f8f8cSSatish Balay PetscFunctionReturn(0); 1232a30f8f8cSSatish Balay } 1233a30f8f8cSSatish Balay 12344a2ae208SSatish Balay #undef __FUNCT__ 12354a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1236dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1237a30f8f8cSSatish Balay { 1238a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1239d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1240dfbe8321SBarry Smith PetscErrorCode ierr; 1241a30f8f8cSSatish Balay 1242a30f8f8cSSatish Balay PetscFunctionBegin; 1243e98b92d7SKris Buschelman switch (op) { 1244e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1245e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1246e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1247e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1248e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1249e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1250e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1251a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1252a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1253e98b92d7SKris Buschelman break; 1254e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1255a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1256a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1257a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1258e98b92d7SKris Buschelman break; 1259e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1260e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1261e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1262ad86a440SBarry Smith ierr = PetscInfo1(A,"Option %d ignored\n",op);CHKERRQ(ierr); 1263e98b92d7SKris Buschelman break; 1264e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1265a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1266a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1267a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1268e98b92d7SKris Buschelman break; 1269e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1270a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1271e98b92d7SKris Buschelman break; 1272e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 127329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1274e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1275a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1276e98b92d7SKris Buschelman break; 12779a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12789a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12799a4540c5SBarry Smith case MAT_HERMITIAN: 12809a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 128177e54ba9SKris Buschelman case MAT_SYMMETRIC: 128277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12839a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12849a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12859a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 128677e54ba9SKris Buschelman break; 1287d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1288d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_TRUE; 1289d0d4cfc2SHong Zhang break; 1290d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1291d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_FALSE; 1292d0d4cfc2SHong Zhang break; 1293d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1294d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1295d0d4cfc2SHong Zhang break; 1296e98b92d7SKris Buschelman default: 1297ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1298a30f8f8cSSatish Balay } 1299a30f8f8cSSatish Balay PetscFunctionReturn(0); 1300a30f8f8cSSatish Balay } 1301a30f8f8cSSatish Balay 13024a2ae208SSatish Balay #undef __FUNCT__ 13038115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1304dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1305a30f8f8cSSatish Balay { 1306dfbe8321SBarry Smith PetscErrorCode ierr; 1307a30f8f8cSSatish Balay PetscFunctionBegin; 1308999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13098115998fSBarry Smith PetscFunctionReturn(0); 1310a30f8f8cSSatish Balay } 1311a30f8f8cSSatish Balay 13124a2ae208SSatish Balay #undef __FUNCT__ 13134a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1314dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1315a30f8f8cSSatish Balay { 1316a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1317a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1318dfbe8321SBarry Smith PetscErrorCode ierr; 13195e90f9d9SHong Zhang PetscInt nv,m,n; 1320b3bf805bSHong Zhang PetscTruth flg; 1321a30f8f8cSSatish Balay 1322a30f8f8cSSatish Balay PetscFunctionBegin; 1323a30f8f8cSSatish Balay if (ll != rr){ 1324b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1325b3bf805bSHong Zhang if (!flg) 132629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1327a30f8f8cSSatish Balay } 1328b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1329b3bf805bSHong Zhang 13305e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13315e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1332b3bf805bSHong Zhang 13335e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13345e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13355e90f9d9SHong Zhang 1336a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 13375e90f9d9SHong Zhang 13385e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1339a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13405e90f9d9SHong Zhang 13415e90f9d9SHong Zhang /* scale the diagonal part */ 1342a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1343a30f8f8cSSatish Balay 13445e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1345a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1346a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1347a30f8f8cSSatish Balay PetscFunctionReturn(0); 1348a30f8f8cSSatish Balay } 1349a30f8f8cSSatish Balay 13504a2ae208SSatish Balay #undef __FUNCT__ 13514a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1352dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1353a30f8f8cSSatish Balay { 1354a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1355a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 13561302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1357dfbe8321SBarry Smith PetscErrorCode ierr; 1358a30f8f8cSSatish Balay 1359a30f8f8cSSatish Balay PetscFunctionBegin; 1360a30f8f8cSSatish Balay if (!a->rank) { 1361a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay } 13631302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1364a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1365a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1366a30f8f8cSSatish Balay PetscFunctionReturn(0); 1367a30f8f8cSSatish Balay } 1368a30f8f8cSSatish Balay 13694a2ae208SSatish Balay #undef __FUNCT__ 13704a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1371dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1372a30f8f8cSSatish Balay { 1373f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1374dfbe8321SBarry Smith PetscErrorCode ierr; 1375a30f8f8cSSatish Balay 1376a30f8f8cSSatish Balay PetscFunctionBegin; 1377a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1378a30f8f8cSSatish Balay PetscFunctionReturn(0); 1379a30f8f8cSSatish Balay } 1380a30f8f8cSSatish Balay 13816849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1382a30f8f8cSSatish Balay 13834a2ae208SSatish Balay #undef __FUNCT__ 13844a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1385dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1386a30f8f8cSSatish Balay { 1387a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1388a30f8f8cSSatish Balay Mat a,b,c,d; 1389a30f8f8cSSatish Balay PetscTruth flg; 1390dfbe8321SBarry Smith PetscErrorCode ierr; 1391a30f8f8cSSatish Balay 1392a30f8f8cSSatish Balay PetscFunctionBegin; 1393a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1394a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1395a30f8f8cSSatish Balay 1396a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1397abc0a331SBarry Smith if (flg) { 1398a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1401a30f8f8cSSatish Balay PetscFunctionReturn(0); 1402a30f8f8cSSatish Balay } 1403a30f8f8cSSatish Balay 14044a2ae208SSatish Balay #undef __FUNCT__ 14053c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 14063c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 14073c896bc6SHong Zhang { 14083c896bc6SHong Zhang PetscErrorCode ierr; 14093c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 14103c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 14113c896bc6SHong Zhang 14123c896bc6SHong Zhang PetscFunctionBegin; 14133c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14143c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1415d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14163c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1417d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14183c896bc6SHong Zhang } else { 14193c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14203c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14213c896bc6SHong Zhang } 14223c896bc6SHong Zhang PetscFunctionReturn(0); 14233c896bc6SHong Zhang } 14243c896bc6SHong Zhang 14253c896bc6SHong Zhang #undef __FUNCT__ 14264a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1427dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1428273d9f13SBarry Smith { 1429dfbe8321SBarry Smith PetscErrorCode ierr; 1430273d9f13SBarry Smith 1431273d9f13SBarry Smith PetscFunctionBegin; 14327edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1433273d9f13SBarry Smith PetscFunctionReturn(0); 1434273d9f13SBarry Smith } 1435a5e6ed63SBarry Smith 14364fe895cdSHong Zhang #include "petscblaslapack.h" 14374fe895cdSHong Zhang #undef __FUNCT__ 14384fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14394fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14404fe895cdSHong Zhang { 14414fe895cdSHong Zhang PetscErrorCode ierr; 14424fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14434fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14444fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14454fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14464fe895cdSHong Zhang 14474fe895cdSHong Zhang PetscFunctionBegin; 14484fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14494fe895cdSHong Zhang PetscScalar alpha = a; 14504fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14514fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14524fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14534fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14544fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14554fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14564fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14574fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14584fe895cdSHong Zhang } else { 1459d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14604fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1461d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14624fe895cdSHong Zhang } 14634fe895cdSHong Zhang PetscFunctionReturn(0); 14644fe895cdSHong Zhang } 14654fe895cdSHong Zhang 1466a5e6ed63SBarry Smith #undef __FUNCT__ 1467a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14681302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1469a5e6ed63SBarry Smith { 14706849ba73SBarry Smith PetscErrorCode ierr; 14711302d50aSBarry Smith PetscInt i; 1472a5e6ed63SBarry Smith PetscTruth flg; 1473a5e6ed63SBarry Smith 14746849ba73SBarry Smith PetscFunctionBegin; 1475a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1476a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1477a5e6ed63SBarry Smith if (!flg) { 14781302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1479a5e6ed63SBarry Smith } 1480a5e6ed63SBarry Smith } 1481a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1482a5e6ed63SBarry Smith PetscFunctionReturn(0); 1483a5e6ed63SBarry Smith } 1484a5e6ed63SBarry Smith 1485a5e6ed63SBarry Smith 1486a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1487a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1488a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1489a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1490a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1491a9d4b620SHong Zhang MatMult_MPISBAIJ, 149297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1493431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1494431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 149897304618SKris Buschelman /*10*/ 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 15012798e883SHong Zhang MatRelax_MPISBAIJ, 1502a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 150397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1504a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1505a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1506a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1507a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 150897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1509a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1512a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1513dcf5cc72SBarry Smith /*25*/ 0, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 151897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1519b5df2d14SHong Zhang 0, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 152397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 15284fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1529a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1530d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1531a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15323c896bc6SHong Zhang MatCopy_MPISBAIJ, 153397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1534a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 1538521d7252SBarry Smith /*50*/ 0, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay 0, 154397304618SKris Buschelman /*55*/ 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1546a30f8f8cSSatish Balay 0, 1547a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 154897304618SKris Buschelman /*60*/ 0, 1549a30f8f8cSSatish Balay 0, 1550a30f8f8cSSatish Balay 0, 1551357abbc8SBarry Smith 0, 155224d5174aSHong Zhang 0, 155397304618SKris Buschelman /*65*/ 0, 155424d5174aSHong Zhang 0, 155524d5174aSHong Zhang 0, 155624d5174aSHong Zhang 0, 155724d5174aSHong Zhang 0, 155897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 155924d5174aSHong Zhang 0, 156097304618SKris Buschelman 0, 156197304618SKris Buschelman 0, 156297304618SKris Buschelman 0, 156397304618SKris Buschelman /*75*/ 0, 156497304618SKris Buschelman 0, 156597304618SKris Buschelman 0, 156697304618SKris Buschelman 0, 156797304618SKris Buschelman 0, 156897304618SKris Buschelman /*80*/ 0, 156997304618SKris Buschelman 0, 157097304618SKris Buschelman 0, 157197304618SKris Buschelman 0, 1572865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1573865e5f61SKris Buschelman /*85*/ 0, 1574865e5f61SKris Buschelman 0, 1575865e5f61SKris Buschelman 0, 1576865e5f61SKris Buschelman 0, 1577865e5f61SKris Buschelman 0, 1578865e5f61SKris Buschelman /*90*/ 0, 1579865e5f61SKris Buschelman 0, 1580865e5f61SKris Buschelman 0, 1581865e5f61SKris Buschelman 0, 1582865e5f61SKris Buschelman 0, 1583865e5f61SKris Buschelman /*95*/ 0, 1584865e5f61SKris Buschelman 0, 1585865e5f61SKris Buschelman 0, 158699cafbc1SBarry Smith 0, 158799cafbc1SBarry Smith 0, 158899cafbc1SBarry Smith /*100*/0, 158999cafbc1SBarry Smith 0, 159099cafbc1SBarry Smith 0, 159199cafbc1SBarry Smith 0, 159299cafbc1SBarry Smith 0, 159399cafbc1SBarry Smith /*105*/0, 159499cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1595d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1596d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1597d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 159899cafbc1SBarry Smith }; 1599a30f8f8cSSatish Balay 1600a30f8f8cSSatish Balay 1601a30f8f8cSSatish Balay EXTERN_C_BEGIN 16024a2ae208SSatish Balay #undef __FUNCT__ 16034a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1604be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1605a30f8f8cSSatish Balay { 1606a30f8f8cSSatish Balay PetscFunctionBegin; 1607a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1608a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1609a30f8f8cSSatish Balay PetscFunctionReturn(0); 1610a30f8f8cSSatish Balay } 1611a30f8f8cSSatish Balay EXTERN_C_END 1612a30f8f8cSSatish Balay 1613273d9f13SBarry Smith EXTERN_C_BEGIN 16144a2ae208SSatish Balay #undef __FUNCT__ 1615a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1616be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1617a23d5eceSKris Buschelman { 1618a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1619dfbe8321SBarry Smith PetscErrorCode ierr; 16201302d50aSBarry Smith PetscInt i,mbs,Mbs; 1621a23d5eceSKris Buschelman 1622a23d5eceSKris Buschelman PetscFunctionBegin; 1623a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1624a23d5eceSKris Buschelman 1625a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1626a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1627a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 162877431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 162977431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1630899cda47SBarry Smith 1631899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 1632899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr); 1633899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr); 1634899cda47SBarry Smith 1635a23d5eceSKris Buschelman if (d_nnz) { 1636899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 163777431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1638a23d5eceSKris Buschelman } 1639a23d5eceSKris Buschelman } 1640a23d5eceSKris Buschelman if (o_nnz) { 1641899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 164277431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1643a23d5eceSKris Buschelman } 1644a23d5eceSKris Buschelman } 1645a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1646a23d5eceSKris Buschelman 1647a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1648899cda47SBarry Smith mbs = B->rmap.n/bs; 1649899cda47SBarry Smith Mbs = B->rmap.N/bs; 1650899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1651899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1652a23d5eceSKris Buschelman } 1653a23d5eceSKris Buschelman 1654899cda47SBarry Smith B->rmap.bs = bs; 1655a23d5eceSKris Buschelman b->bs2 = bs*bs; 1656a23d5eceSKris Buschelman b->mbs = mbs; 1657a23d5eceSKris Buschelman b->nbs = mbs; 1658a23d5eceSKris Buschelman b->Mbs = Mbs; 1659a23d5eceSKris Buschelman b->Nbs = Mbs; 1660a23d5eceSKris Buschelman 1661a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1662899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1663a23d5eceSKris Buschelman } 1664899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1665899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1666a23d5eceSKris Buschelman 1667899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1668899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1669a23d5eceSKris Buschelman 1670f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1671899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16729c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1673c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 167452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16759c097c71SKris Buschelman 1676f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1677899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16784aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1679589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 168052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1681a23d5eceSKris Buschelman 1682a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1683a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1684a23d5eceSKris Buschelman 1685a23d5eceSKris Buschelman PetscFunctionReturn(0); 1686a23d5eceSKris Buschelman } 1687a23d5eceSKris Buschelman EXTERN_C_END 1688a23d5eceSKris Buschelman 16890bad9183SKris Buschelman /*MC 1690fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16910bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16920bad9183SKris Buschelman 16930bad9183SKris Buschelman Options Database Keys: 16940bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16950bad9183SKris Buschelman 16960bad9183SKris Buschelman Level: beginner 16970bad9183SKris Buschelman 16980bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16990bad9183SKris Buschelman M*/ 17000bad9183SKris Buschelman 1701a23d5eceSKris Buschelman EXTERN_C_BEGIN 1702a23d5eceSKris Buschelman #undef __FUNCT__ 17034a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1704be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1705b5df2d14SHong Zhang { 1706b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1707dfbe8321SBarry Smith PetscErrorCode ierr; 1708b5df2d14SHong Zhang PetscTruth flg; 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang PetscFunctionBegin; 1711b5df2d14SHong Zhang 1712b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1713b0a32e0cSBarry Smith B->data = (void*)b; 1714b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1715b5df2d14SHong Zhang 1716b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1717b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1718b5df2d14SHong Zhang B->mapping = 0; 1719b5df2d14SHong Zhang B->factor = 0; 1720b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1721b5df2d14SHong Zhang 1722b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1723b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1724b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1725b5df2d14SHong Zhang 1726b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1727899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1728b5df2d14SHong Zhang 1729b5df2d14SHong Zhang /* build cache for off array entries formed */ 1730b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1731b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1732b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1733b5df2d14SHong Zhang b->garray = PETSC_NULL; 1734b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1735b5df2d14SHong Zhang 1736f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1737b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 173864a35ccbSBarry Smith b->setvalueslen = 0; 1739b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1740b5df2d14SHong Zhang #endif 1741b5df2d14SHong Zhang 1742b5df2d14SHong Zhang /* stuff used in block assembly */ 1743b5df2d14SHong Zhang b->barray = 0; 1744b5df2d14SHong Zhang 1745b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1746b5df2d14SHong Zhang b->lvec = 0; 1747b5df2d14SHong Zhang b->Mvctx = 0; 174840781036SHong Zhang b->slvec0 = 0; 174940781036SHong Zhang b->slvec0b = 0; 175040781036SHong Zhang b->slvec1 = 0; 175140781036SHong Zhang b->slvec1a = 0; 175240781036SHong Zhang b->slvec1b = 0; 175340781036SHong Zhang b->sMvctx = 0; 1754b5df2d14SHong Zhang 1755b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1756b5df2d14SHong Zhang b->rowindices = 0; 1757b5df2d14SHong Zhang b->rowvalues = 0; 1758b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1759b5df2d14SHong Zhang 1760b5df2d14SHong Zhang /* hash table stuff */ 1761b5df2d14SHong Zhang b->ht = 0; 1762b5df2d14SHong Zhang b->hd = 0; 1763b5df2d14SHong Zhang b->ht_size = 0; 1764b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1765b5df2d14SHong Zhang b->ht_fact = 0; 1766b5df2d14SHong Zhang b->ht_total_ct = 0; 1767b5df2d14SHong Zhang b->ht_insert_ct = 0; 1768b5df2d14SHong Zhang 176959ffdab8SBarry Smith b->in_loc = 0; 177059ffdab8SBarry Smith b->v_loc = 0; 177159ffdab8SBarry Smith b->n_loc = 0; 1772e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1773b5df2d14SHong Zhang if (flg) { 1774f6275e2eSBarry Smith PetscReal fact = 1.39; 1775b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1776e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1777b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1778b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1779ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1780b5df2d14SHong Zhang } 1781b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1782b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1783b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1784b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1785b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1786b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1787b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1788b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1789b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1790a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1791a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1792a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 179323ce1328SBarry Smith B->symmetric = PETSC_TRUE; 179423ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 179523ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 179623ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1797b5df2d14SHong Zhang PetscFunctionReturn(0); 1798b5df2d14SHong Zhang } 1799273d9f13SBarry Smith EXTERN_C_END 1800b5df2d14SHong Zhang 1801209238afSKris Buschelman /*MC 1802002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1803209238afSKris Buschelman 1804209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1805209238afSKris Buschelman and MATMPISBAIJ otherwise. 1806209238afSKris Buschelman 1807209238afSKris Buschelman Options Database Keys: 1808209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1809209238afSKris Buschelman 1810209238afSKris Buschelman Level: beginner 1811209238afSKris Buschelman 1812209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1813209238afSKris Buschelman M*/ 1814209238afSKris Buschelman 1815209238afSKris Buschelman EXTERN_C_BEGIN 1816209238afSKris Buschelman #undef __FUNCT__ 1817209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1818be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1819dfbe8321SBarry Smith { 18206849ba73SBarry Smith PetscErrorCode ierr; 18211302d50aSBarry Smith PetscMPIInt size; 1822209238afSKris Buschelman 1823209238afSKris Buschelman PetscFunctionBegin; 1824209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1825209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1826209238afSKris Buschelman if (size == 1) { 1827209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1828209238afSKris Buschelman } else { 1829209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1830209238afSKris Buschelman } 1831209238afSKris Buschelman PetscFunctionReturn(0); 1832209238afSKris Buschelman } 1833209238afSKris Buschelman EXTERN_C_END 1834209238afSKris Buschelman 18354a2ae208SSatish Balay #undef __FUNCT__ 18364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1837b5df2d14SHong Zhang /*@C 1838b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1839b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1840b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1841b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1842b5df2d14SHong Zhang 1843b5df2d14SHong Zhang Collective on Mat 1844b5df2d14SHong Zhang 1845b5df2d14SHong Zhang Input Parameters: 1846b5df2d14SHong Zhang + A - the matrix 1847b5df2d14SHong Zhang . bs - size of blockk 1848b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1849b5df2d14SHong Zhang submatrix (same for all local rows) 1850b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18516d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18526d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18536d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1854b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1855b5df2d14SHong Zhang submatrix (same for all local rows). 1856b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1857b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1858b5df2d14SHong Zhang each block row) or PETSC_NULL. 1859b5df2d14SHong Zhang 1860b5df2d14SHong Zhang 1861b5df2d14SHong Zhang Options Database Keys: 1862b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1863b5df2d14SHong Zhang block calculations (much slower) 1864b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang Notes: 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1869b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1870b5df2d14SHong Zhang 187149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187249a6f317SBarry Smith 1873b5df2d14SHong Zhang Storage Information: 1874b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1875b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1876b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1877b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1878b5df2d14SHong Zhang 1879b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1880b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1881b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1882b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1883b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1884b5df2d14SHong Zhang 1885b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1886b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1887b5df2d14SHong Zhang 1888b5df2d14SHong Zhang .vb 1889b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1890b5df2d14SHong Zhang ------------------- 1891b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1892b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1893b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1894b5df2d14SHong Zhang ------------------- 1895b5df2d14SHong Zhang .ve 1896b5df2d14SHong Zhang 1897b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1898b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18996d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19006d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1901b5df2d14SHong Zhang 19026d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19036d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1904b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1905b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1906b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1907b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1908b5df2d14SHong Zhang matrices. 1909b5df2d14SHong Zhang 1910b5df2d14SHong Zhang Level: intermediate 1911b5df2d14SHong Zhang 1912b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1913b5df2d14SHong Zhang 1914b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1915b5df2d14SHong Zhang @*/ 1916be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1917b5df2d14SHong Zhang { 19181302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1919b5df2d14SHong Zhang 1920b5df2d14SHong Zhang PetscFunctionBegin; 1921a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1922a23d5eceSKris Buschelman if (f) { 1923a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1924b5df2d14SHong Zhang } 1925b5df2d14SHong Zhang PetscFunctionReturn(0); 1926b5df2d14SHong Zhang } 1927b5df2d14SHong Zhang 19284a2ae208SSatish Balay #undef __FUNCT__ 19294a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1930a30f8f8cSSatish Balay /*@C 1931a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1932a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1933a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1934a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1935a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1936a30f8f8cSSatish Balay 1937a30f8f8cSSatish Balay Collective on MPI_Comm 1938a30f8f8cSSatish Balay 1939a30f8f8cSSatish Balay Input Parameters: 1940a30f8f8cSSatish Balay + comm - MPI communicator 1941a30f8f8cSSatish Balay . bs - size of blockk 1942a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1943a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1944a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1945a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1946a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1947a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1948a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1949a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1950a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1951a30f8f8cSSatish Balay submatrix (same for all local rows) 1952a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19536d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19546d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19556d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1956a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1957a30f8f8cSSatish Balay submatrix (same for all local rows). 1958a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1959a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1960a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1961a30f8f8cSSatish Balay 1962a30f8f8cSSatish Balay Output Parameter: 1963a30f8f8cSSatish Balay . A - the matrix 1964a30f8f8cSSatish Balay 1965a30f8f8cSSatish Balay Options Database Keys: 1966a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1967a30f8f8cSSatish Balay block calculations (much slower) 1968a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1969a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1970a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1971a30f8f8cSSatish Balay 1972a30f8f8cSSatish Balay Notes: 1973d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1974d1be2dadSMatthew Knepley 1975a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1976a30f8f8cSSatish Balay (possibly both). 1977a30f8f8cSSatish Balay 1978a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1979a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1980a30f8f8cSSatish Balay 198149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 198249a6f317SBarry Smith 1983a30f8f8cSSatish Balay Storage Information: 1984a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1985a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1986a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1987a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1988a30f8f8cSSatish Balay 1989a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1990a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1991a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1992a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1993a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1996a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1997a30f8f8cSSatish Balay 1998a30f8f8cSSatish Balay .vb 1999a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2000a30f8f8cSSatish Balay ------------------- 2001a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2002a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2003a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2004a30f8f8cSSatish Balay ------------------- 2005a30f8f8cSSatish Balay .ve 2006a30f8f8cSSatish Balay 2007a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2008a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20096d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20106d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2011a30f8f8cSSatish Balay 20126d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20136d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2014a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2015a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2016a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2017a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2018a30f8f8cSSatish Balay matrices. 2019a30f8f8cSSatish Balay 2020a30f8f8cSSatish Balay Level: intermediate 2021a30f8f8cSSatish Balay 2022a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2023a30f8f8cSSatish Balay 2024a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2025a30f8f8cSSatish Balay @*/ 2026a30f8f8cSSatish Balay 2027be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2028a30f8f8cSSatish Balay { 20296849ba73SBarry Smith PetscErrorCode ierr; 20301302d50aSBarry Smith PetscMPIInt size; 2031a30f8f8cSSatish Balay 2032a30f8f8cSSatish Balay PetscFunctionBegin; 2033f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2034f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2035273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2036273d9f13SBarry Smith if (size > 1) { 2037b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2038b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2039273d9f13SBarry Smith } else { 2040273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2041273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2042273d9f13SBarry Smith } 2043a30f8f8cSSatish Balay PetscFunctionReturn(0); 2044a30f8f8cSSatish Balay } 2045a30f8f8cSSatish Balay 2046a30f8f8cSSatish Balay 20474a2ae208SSatish Balay #undef __FUNCT__ 20484a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20496849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2050a30f8f8cSSatish Balay { 2051a30f8f8cSSatish Balay Mat mat; 2052a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2053dfbe8321SBarry Smith PetscErrorCode ierr; 2054899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2055387bc808SHong Zhang PetscScalar *array; 2056a30f8f8cSSatish Balay 2057a30f8f8cSSatish Balay PetscFunctionBegin; 2058a30f8f8cSSatish Balay *newmat = 0; 2059f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2060899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2061be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20621d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2063899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2064899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2065e1b6402fSHong Zhang 206682327fa8SHong Zhang mat->factor = matin->factor; 2067273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20697fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20707fff6886SHong Zhang 2071b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2072a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2073a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2074a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2075a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2076a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2077a30f8f8cSSatish Balay 2078899cda47SBarry Smith 2079a30f8f8cSSatish Balay a->size = oldmat->size; 2080a30f8f8cSSatish Balay a->rank = oldmat->rank; 2081a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2082a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2083a30f8f8cSSatish Balay a->rowindices = 0; 2084a30f8f8cSSatish Balay a->rowvalues = 0; 2085a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2086a30f8f8cSSatish Balay a->barray = 0; 2087899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2088899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2089899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2090899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2091a30f8f8cSSatish Balay 2092a30f8f8cSSatish Balay /* hash table stuff */ 2093a30f8f8cSSatish Balay a->ht = 0; 2094a30f8f8cSSatish Balay a->hd = 0; 2095a30f8f8cSSatish Balay a->ht_size = 0; 2096a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2097a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2098a30f8f8cSSatish Balay a->ht_total_ct = 0; 2099a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2100a30f8f8cSSatish Balay 2101899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2102a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2103899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2104a30f8f8cSSatish Balay if (oldmat->colmap) { 2105a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2106a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2107a30f8f8cSSatish Balay #else 21081302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21101302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2111a30f8f8cSSatish Balay #endif 2112a30f8f8cSSatish Balay } else a->colmap = 0; 2113387bc808SHong Zhang 2114a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21151302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 211652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21171302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2118a30f8f8cSSatish Balay } else a->garray = 0; 2119a30f8f8cSSatish Balay 2120a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 212152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2122a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 212352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 212482327fa8SHong Zhang 212582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 212652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2129387bc808SHong Zhang 2130387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21311ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2132387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2133387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21341ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21351ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2136387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21371ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 214052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 214152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 214252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2143387bc808SHong Zhang 2144387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2145387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2146387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214882327fa8SHong Zhang 2149a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 215052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 215252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2153b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay *newmat = mat; 2155a30f8f8cSSatish Balay PetscFunctionReturn(0); 2156a30f8f8cSSatish Balay } 2157a30f8f8cSSatish Balay 2158a30f8f8cSSatish Balay #include "petscsys.h" 2159a30f8f8cSSatish Balay 21604a2ae208SSatish Balay #undef __FUNCT__ 21614a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2162f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2163a30f8f8cSSatish Balay { 2164a30f8f8cSSatish Balay Mat A; 21656849ba73SBarry Smith PetscErrorCode ierr; 216613f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 216787828ca2SBarry Smith PetscScalar *vals,*buf; 2168a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2169a30f8f8cSSatish Balay MPI_Status status; 21702fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 217113f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21722fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21731302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21741302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21751302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 217613f74950SBarry Smith int fd; 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay PetscFunctionBegin; 2179b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay 2181a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2183a30f8f8cSSatish Balay if (!rank) { 2184b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2186552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2187a30f8f8cSSatish Balay if (header[3] < 0) { 218829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay } 2191a30f8f8cSSatish Balay 2192a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2194a30f8f8cSSatish Balay 219529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2196a30f8f8cSSatish Balay 2197a30f8f8cSSatish Balay /* 2198a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2199a30f8f8cSSatish Balay divisible by the blocksize 2200a30f8f8cSSatish Balay */ 2201a30f8f8cSSatish Balay Mbs = M/bs; 2202a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2203a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2204a30f8f8cSSatish Balay else Mbs++; 2205a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2206ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2207a30f8f8cSSatish Balay } 2208a30f8f8cSSatish Balay 2209a30f8f8cSSatish Balay /* determine ownership of all rows */ 2210a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2211a30f8f8cSSatish Balay m = mbs*bs; 2212a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay browners = rowners + size + 1; 2214a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay rowners[0] = 0; 2216a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2217a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2218a30f8f8cSSatish Balay rstart = rowners[rank]; 2219a30f8f8cSSatish Balay rend = rowners[rank+1]; 2220a30f8f8cSSatish Balay 2221a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22222fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay if (!rank) { 22241302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2227a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2229a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay } else { 2232a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay } 2234a30f8f8cSSatish Balay 22350222edb1SHong Zhang if (!rank) { /* procs[0] */ 2236a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22371302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22381302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2239a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2240a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2241a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2242a30f8f8cSSatish Balay } 2243a30f8f8cSSatish Balay } 2244a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2245a30f8f8cSSatish Balay 2246a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2247a30f8f8cSSatish Balay maxnz = 0; 2248a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2249a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2250a30f8f8cSSatish Balay } 22511302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay 2253a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2254a30f8f8cSSatish Balay nz = procsnz[0]; 22551302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay mycols = ibuf; 2257a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2258a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2259a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2260a30f8f8cSSatish Balay 2261a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2262a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2263a30f8f8cSSatish Balay nz = procsnz[i]; 2264a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2265a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay } 2267a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2268a30f8f8cSSatish Balay if (size != 1) { 2269a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2270a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2271a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2272a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2273a30f8f8cSSatish Balay } 2274a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22750222edb1SHong Zhang } else { /* procs[i], i>0 */ 2276a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2277a30f8f8cSSatish Balay nz = 0; 2278a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2279a30f8f8cSSatish Balay nz += locrowlens[i]; 2280a30f8f8cSSatish Balay } 22811302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2282a30f8f8cSSatish Balay mycols = ibuf; 2283a30f8f8cSSatish Balay /* receive message of column indices*/ 2284a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2285a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 228629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2287a30f8f8cSSatish Balay } 2288a30f8f8cSSatish Balay 2289a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22901302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2291a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22921302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22931302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2294a30f8f8cSSatish Balay masked1 = mask + Mbs; 2295a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2296a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2297a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2298a30f8f8cSSatish Balay dcount = 0; 2299a30f8f8cSSatish Balay odcount = 0; 2300a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2301a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2302a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23030222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2304a30f8f8cSSatish Balay if (!mask[tmp]) { 2305a30f8f8cSSatish Balay mask[tmp] = 1; 23060222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23070222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay } 2310a30f8f8cSSatish Balay rowcount++; 2311a30f8f8cSSatish Balay } 2312a30f8f8cSSatish Balay 23130222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23140222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2315a30f8f8cSSatish Balay 2316a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2317a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2318a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2319a30f8f8cSSatish Balay } 2320a30f8f8cSSatish Balay 2321a30f8f8cSSatish Balay /* create our matrix */ 2322f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2323f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 232422191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232522191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2326273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2327a30f8f8cSSatish Balay 2328a30f8f8cSSatish Balay if (!rank) { 232987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2330a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2331a30f8f8cSSatish Balay nz = procsnz[0]; 2332a30f8f8cSSatish Balay vals = buf; 2333a30f8f8cSSatish Balay mycols = ibuf; 2334a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2335a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2336a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2337a30f8f8cSSatish Balay 2338a30f8f8cSSatish Balay /* insert into matrix */ 2339a30f8f8cSSatish Balay jj = rstart*bs; 2340a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23417e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2342a30f8f8cSSatish Balay mycols += locrowlens[i]; 2343a30f8f8cSSatish Balay vals += locrowlens[i]; 2344a30f8f8cSSatish Balay jj++; 2345a30f8f8cSSatish Balay } 23467e06b45fSHong Zhang 2347a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2348a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2349a30f8f8cSSatish Balay nz = procsnz[i]; 2350a30f8f8cSSatish Balay vals = buf; 2351a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2352a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2353a30f8f8cSSatish Balay } 2354a30f8f8cSSatish Balay /* the last proc */ 2355a30f8f8cSSatish Balay if (size != 1){ 2356a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2357a30f8f8cSSatish Balay vals = buf; 2358a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2360a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2361a30f8f8cSSatish Balay } 2362a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23637e06b45fSHong Zhang 2364a30f8f8cSSatish Balay } else { 2365a30f8f8cSSatish Balay /* receive numeric values */ 236687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2367a30f8f8cSSatish Balay 2368a30f8f8cSSatish Balay /* receive message of values*/ 2369a30f8f8cSSatish Balay vals = buf; 2370a30f8f8cSSatish Balay mycols = ibuf; 2371a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2372a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 237329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2374a30f8f8cSSatish Balay 2375a30f8f8cSSatish Balay /* insert into matrix */ 2376a30f8f8cSSatish Balay jj = rstart*bs; 2377a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2378a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2379a30f8f8cSSatish Balay mycols += locrowlens[i]; 2380a30f8f8cSSatish Balay vals += locrowlens[i]; 2381a30f8f8cSSatish Balay jj++; 2382a30f8f8cSSatish Balay } 2383a30f8f8cSSatish Balay } 23847e06b45fSHong Zhang 2385a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2386a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2387a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2388a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2389a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2390a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2391a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2392a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239322191285SKris Buschelman *newmat = A; 2394a30f8f8cSSatish Balay PetscFunctionReturn(0); 2395a30f8f8cSSatish Balay } 2396a30f8f8cSSatish Balay 23974a2ae208SSatish Balay #undef __FUNCT__ 23984a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2399dcf5cc72SBarry Smith /*XXXXX@ 2400a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2401a30f8f8cSSatish Balay 2402a30f8f8cSSatish Balay Input Parameters: 2403a30f8f8cSSatish Balay . mat - the matrix 2404a30f8f8cSSatish Balay . fact - factor 2405a30f8f8cSSatish Balay 2406a30f8f8cSSatish Balay Collective on Mat 2407a30f8f8cSSatish Balay 2408a30f8f8cSSatish Balay Level: advanced 2409a30f8f8cSSatish Balay 2410a30f8f8cSSatish Balay Notes: 2411a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2412a30f8f8cSSatish Balay 2413a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2414a30f8f8cSSatish Balay 2415a30f8f8cSSatish Balay .seealso: MatSetOption() 2416dcf5cc72SBarry Smith @XXXXX*/ 2417dcf5cc72SBarry Smith 241824d5174aSHong Zhang 24194a2ae208SSatish Balay #undef __FUNCT__ 24204a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2421dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 242224d5174aSHong Zhang { 242324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2424f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2425ca54ac64SHong Zhang PetscReal atmp; 242687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2427dfbe8321SBarry Smith PetscErrorCode ierr; 24281302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24291302d50aSBarry Smith PetscMPIInt rank,size; 24301302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 243187828ca2SBarry Smith PetscScalar *va; 24328a1c53f2SBarry Smith MatScalar *ba; 2433f4c0e9e4SHong Zhang MPI_Status stat; 243424d5174aSHong Zhang 243524d5174aSHong Zhang PetscFunctionBegin; 2436d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24371ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2438f4c0e9e4SHong Zhang 243956faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 244056faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2441f4c0e9e4SHong Zhang 2442899cda47SBarry Smith bs = A->rmap.bs; 2443f4c0e9e4SHong Zhang mbs = a->mbs; 2444f4c0e9e4SHong Zhang Mbs = a->Mbs; 2445f4c0e9e4SHong Zhang ba = b->a; 2446f4c0e9e4SHong Zhang bi = b->i; 2447f4c0e9e4SHong Zhang bj = b->j; 2448f4c0e9e4SHong Zhang 2449f4c0e9e4SHong Zhang /* find ownerships */ 2450899cda47SBarry Smith rowners_bs = A->rmap.range; 2451f4c0e9e4SHong Zhang 2452f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2454ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2455f4c0e9e4SHong Zhang 2456f4c0e9e4SHong Zhang /* row_max for B */ 2457b8475685SHong Zhang if (rank != size-1){ 2458f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2459f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2460f4c0e9e4SHong Zhang brow = bs*i; 2461f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2462f4c0e9e4SHong Zhang bcol = bs*(*bj); 2463f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2464ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2466f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2467f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2468ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2469ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2470f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2471f4c0e9e4SHong Zhang } 2472f4c0e9e4SHong Zhang } 2473f4c0e9e4SHong Zhang bj++; 2474f4c0e9e4SHong Zhang } 2475f4c0e9e4SHong Zhang } 2476f4c0e9e4SHong Zhang 2477f4c0e9e4SHong Zhang /* send values to its owners */ 2478f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2479f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2480ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 248156faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2482ca54ac64SHong Zhang } 2483f4c0e9e4SHong Zhang } 2484f4c0e9e4SHong Zhang 2485f4c0e9e4SHong Zhang /* receive values */ 2486ca54ac64SHong Zhang if (rank){ 2487f4c0e9e4SHong Zhang rvalues = work; 2488ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2489f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 249056faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2491f4c0e9e4SHong Zhang /* process values */ 2492f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2493ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2494f4c0e9e4SHong Zhang } 2495f4c0e9e4SHong Zhang } 2496ca54ac64SHong Zhang } 2497f4c0e9e4SHong Zhang 24981ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2499ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 250024d5174aSHong Zhang PetscFunctionReturn(0); 250124d5174aSHong Zhang } 25022798e883SHong Zhang 25032798e883SHong Zhang #undef __FUNCT__ 25042798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 25051302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25062798e883SHong Zhang { 25072798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2508dfbe8321SBarry Smith PetscErrorCode ierr; 2509899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2510efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2511ffe4fb16SHong Zhang Vec bb1; 2512ffe4fb16SHong Zhang 2513ffe4fb16SHong Zhang PetscFunctionBegin; 251477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2515ffe4fb16SHong Zhang if (bs > 1) 2516ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2517ffe4fb16SHong Zhang 2518ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2519ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2520ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2521ffe4fb16SHong Zhang its--; 2522ffe4fb16SHong Zhang } 2523ffe4fb16SHong Zhang 2524ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2525ffe4fb16SHong Zhang while (its--){ 2526ffe4fb16SHong Zhang 2527ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2528ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2529ffe4fb16SHong Zhang 2530ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25311ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25321ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2533ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25341ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang 2536efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang 2538ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25391ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25401ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2541ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang 2544ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25452dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2546ffe4fb16SHong Zhang 2547ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25481ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25491ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2551ffe4fb16SHong Zhang 2552ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2553ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2554ffe4fb16SHong Zhang 2555ffe4fb16SHong Zhang /* local diagonal sweep */ 2556ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2557ffe4fb16SHong Zhang } 2558ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2559ffe4fb16SHong Zhang } else { 2560ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2561ffe4fb16SHong Zhang } 2562ffe4fb16SHong Zhang PetscFunctionReturn(0); 2563ffe4fb16SHong Zhang } 2564ffe4fb16SHong Zhang 2565ffe4fb16SHong Zhang #undef __FUNCT__ 2566ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25671302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2568ffe4fb16SHong Zhang { 2569ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2570dfbe8321SBarry Smith PetscErrorCode ierr; 25712798e883SHong Zhang Vec lvec1,bb1; 25722798e883SHong Zhang 25732798e883SHong Zhang PetscFunctionBegin; 257477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2575899cda47SBarry Smith if (matin->rmap.bs > 1) 25762798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25772798e883SHong Zhang 2578c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25792798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2580bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25812798e883SHong Zhang its--; 25822798e883SHong Zhang } 25832798e883SHong Zhang 25842798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25852798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25862798e883SHong Zhang while (its--){ 25872798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25882798e883SHong Zhang 25892798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25902798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2591efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25922798e883SHong Zhang 25932798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25942798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25952798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25962798e883SHong Zhang 25972798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2598efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25992798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26002798e883SHong Zhang 26012798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26022798e883SHong Zhang 2603c14dc6b6SHong Zhang /* diagonal sweep */ 2604bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26052798e883SHong Zhang } 26062798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26072798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2608c14dc6b6SHong Zhang } else { 2609c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2610c14dc6b6SHong Zhang } 26112798e883SHong Zhang PetscFunctionReturn(0); 26122798e883SHong Zhang } 26132798e883SHong Zhang 2614